Query 018064
Match_columns 361
No_of_seqs 119 out of 1111
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 6.1E-49 1.3E-53 381.4 20.5 335 11-351 118-465 (467)
2 KOG1304 Amino acid transporter 100.0 4.4E-48 9.6E-53 360.1 25.1 324 12-350 112-449 (449)
3 KOG1303 Amino acid transporter 100.0 4.8E-46 1E-50 352.1 27.1 341 2-353 93-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 1.6E-47 3.6E-52 368.3 -3.9 339 2-347 55-408 (409)
5 PLN03074 auxin influx permease 100.0 8.5E-41 1.8E-45 323.3 24.5 325 14-361 120-462 (473)
6 KOG4303 Vesicular inhibitory a 100.0 1.1E-39 2.3E-44 287.7 5.2 341 2-359 168-523 (524)
7 KOG1305 Amino acid transporter 100.0 6.7E-37 1.4E-41 288.5 18.9 328 15-353 68-408 (411)
8 COG0814 SdaC Amino acid permea 99.9 1.6E-24 3.5E-29 207.1 24.8 324 14-347 72-412 (415)
9 TIGR00837 araaP aromatic amino 99.8 3.7E-17 7.9E-22 156.0 21.3 288 13-319 58-360 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.8 3.7E-16 8E-21 148.6 24.2 309 13-339 64-391 (394)
11 PRK15132 tyrosine transporter 99.7 9.4E-15 2E-19 138.6 22.6 307 13-341 64-390 (403)
12 PRK10483 tryptophan permease; 99.7 1.8E-14 3.9E-19 136.2 23.3 312 12-341 71-401 (414)
13 PRK09664 tryptophan permease T 99.7 3.9E-14 8.4E-19 133.8 23.6 309 12-341 69-402 (415)
14 PRK13629 threonine/serine tran 99.5 5.4E-12 1.2E-16 119.5 24.3 328 12-344 80-440 (443)
15 TIGR00814 stp serine transport 99.5 4.1E-12 8.8E-17 120.9 19.3 314 13-336 65-396 (397)
16 PRK10655 potE putrescine trans 98.8 3.5E-06 7.6E-11 82.0 26.9 58 140-202 188-245 (438)
17 PRK11021 putative transporter; 98.8 7.3E-06 1.6E-10 79.1 28.7 58 138-200 174-231 (410)
18 PRK10644 arginine:agmatin anti 98.8 2.6E-06 5.6E-11 83.1 25.6 186 3-204 62-249 (445)
19 TIGR00909 2A0306 amino acid tr 98.8 8.7E-07 1.9E-11 86.0 21.3 297 3-319 58-377 (429)
20 PRK10746 putative transport pr 98.8 3.7E-06 8.1E-11 82.3 25.8 298 3-319 65-389 (461)
21 TIGR03810 arg_ornith_anti argi 98.8 2.7E-06 5.9E-11 83.5 24.7 300 3-319 57-381 (468)
22 PF13520 AA_permease_2: Amino 98.8 1.4E-06 2.9E-11 84.5 22.1 288 15-320 63-377 (426)
23 TIGR00905 2A0302 transporter, 98.7 4.6E-06 9.9E-11 82.0 24.3 190 3-204 63-256 (473)
24 PRK10435 cadB lysine/cadaverin 98.7 1.7E-05 3.6E-10 77.2 25.4 188 3-205 59-246 (435)
25 TIGR00908 2A0305 ethanolamine 98.7 5.9E-06 1.3E-10 80.5 22.0 179 3-199 62-244 (442)
26 TIGR03813 put_Glu_GABA_T putat 98.6 2.5E-05 5.5E-10 76.8 24.5 53 149-206 202-254 (474)
27 TIGR01773 GABAperm gamma-amino 98.6 2.9E-05 6.4E-10 75.9 24.3 183 3-202 67-257 (452)
28 PRK10249 phenylalanine transpo 98.6 4.6E-05 1E-09 74.6 25.0 59 138-201 206-264 (458)
29 PRK11357 frlA putative fructos 98.5 2E-05 4.3E-10 76.9 22.2 57 140-201 194-250 (445)
30 TIGR00906 2A0303 cationic amin 98.5 4.1E-05 8.8E-10 76.7 24.4 286 21-318 100-411 (557)
31 PRK11387 S-methylmethionine tr 98.5 2.5E-05 5.5E-10 76.7 22.6 62 140-206 205-266 (471)
32 TIGR00913 2A0310 amino acid pe 98.5 6.8E-05 1.5E-09 73.9 25.2 182 3-200 58-251 (478)
33 PRK10197 gamma-aminobutyrate t 98.5 3.9E-05 8.4E-10 74.9 23.0 172 138-318 178-368 (446)
34 PRK11049 D-alanine/D-serine/gl 98.5 8.1E-05 1.8E-09 73.1 24.5 289 13-318 83-399 (469)
35 PRK10238 aromatic amino acid t 98.5 4.9E-05 1.1E-09 74.4 22.5 295 3-318 67-386 (456)
36 PRK15049 L-asparagine permease 98.4 0.00015 3.3E-09 71.7 25.1 170 140-318 219-406 (499)
37 TIGR00910 2A0307_GadC glutamat 98.4 0.00016 3.5E-09 71.6 24.7 51 144-199 197-247 (507)
38 TIGR00912 2A0309 spore germina 98.4 2E-05 4.4E-10 74.6 17.4 274 15-318 65-354 (359)
39 PRK10580 proY putative proline 98.4 0.00015 3.3E-09 71.0 24.0 59 138-201 196-254 (457)
40 COG1113 AnsP Gamma-aminobutyra 98.3 7.3E-05 1.6E-09 70.8 19.4 288 13-318 76-389 (462)
41 TIGR00930 2a30 K-Cl cotranspor 98.3 0.00033 7.1E-09 74.1 25.8 175 19-200 148-334 (953)
42 TIGR00911 2A0308 L-type amino 98.3 0.00021 4.6E-09 70.8 22.7 60 139-203 233-292 (501)
43 TIGR00907 2A0304 amino acid pe 98.3 0.00061 1.3E-08 67.2 25.8 52 142-198 218-269 (482)
44 COG0531 PotE Amino acid transp 98.3 0.00041 9E-09 67.9 24.2 289 15-318 77-389 (466)
45 PRK10836 lysine transporter; P 98.2 0.00075 1.6E-08 66.7 23.7 61 140-205 204-264 (489)
46 TIGR03428 ureacarb_perm permea 98.2 0.0031 6.6E-08 62.2 27.7 195 3-206 69-273 (475)
47 KOG1287 Amino acid transporter 98.2 0.00037 8.1E-09 67.0 20.0 178 137-323 200-391 (479)
48 PRK15238 inner membrane transp 98.1 0.0025 5.4E-08 63.1 26.4 55 142-201 212-266 (496)
49 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.0016 3.4E-08 63.6 21.2 281 14-306 76-377 (442)
50 TIGR02358 thia_cytX probable h 97.9 0.012 2.7E-07 56.2 24.8 262 14-306 58-322 (386)
51 COG1457 CodB Purine-cytosine p 97.7 0.013 2.9E-07 56.2 22.4 262 17-307 84-351 (442)
52 PF03845 Spore_permease: Spore 97.7 0.0015 3.3E-08 60.8 15.2 225 13-257 61-295 (320)
53 PRK09442 panF sodium/panthothe 97.6 0.08 1.7E-06 52.3 26.1 91 11-110 105-195 (483)
54 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.072 1.6E-06 51.1 23.1 57 262-318 322-378 (416)
55 PF00324 AA_permease: Amino ac 97.5 0.00051 1.1E-08 67.7 8.8 65 139-208 198-262 (478)
56 KOG1289 Amino acid transporter 97.4 0.043 9.3E-07 53.5 20.1 113 93-210 196-316 (550)
57 COG3949 Uncharacterized membra 97.3 0.036 7.9E-07 50.6 17.9 80 12-101 64-143 (349)
58 TIGR00813 sss transporter, SSS 97.3 0.088 1.9E-06 50.7 21.8 89 12-109 64-152 (407)
59 TIGR02119 panF sodium/pantothe 97.3 0.23 5.1E-06 48.8 26.7 92 11-111 104-195 (471)
60 PRK12488 acetate permease; Pro 97.2 0.31 6.7E-06 49.0 27.8 88 13-109 129-216 (549)
61 PRK11375 allantoin permease; P 97.2 0.14 3E-06 50.5 22.4 277 14-306 89-391 (484)
62 COG0833 LysP Amino acid transp 97.2 0.28 6.1E-06 48.0 23.4 240 3-257 100-359 (541)
63 KOG1286 Amino acid transporter 97.1 0.033 7.1E-07 55.5 17.0 171 140-317 231-422 (554)
64 COG0591 PutP Na+/proline sympo 97.0 0.38 8.3E-06 47.6 23.6 92 9-109 100-191 (493)
65 PRK11017 codB cytosine permeas 96.8 0.5 1.1E-05 45.5 21.9 173 14-207 71-244 (404)
66 TIGR02711 symport_actP cation/ 96.7 0.82 1.8E-05 46.0 26.9 89 12-109 128-216 (549)
67 PF00474 SSF: Sodium:solute sy 96.5 0.21 4.5E-06 48.1 17.4 90 11-109 66-156 (406)
68 PRK15419 proline:sodium sympor 95.7 2.5 5.5E-05 42.0 25.7 88 12-109 106-196 (502)
69 PF01566 Nramp: Natural resist 95.3 2.2 4.7E-05 40.4 18.2 84 14-107 42-127 (358)
70 TIGR02121 Na_Pro_sym sodium/pr 94.9 4.3 9.2E-05 40.2 26.2 89 11-109 101-192 (487)
71 PRK00701 manganese transport p 94.7 4.7 0.0001 39.3 24.9 78 14-101 94-173 (439)
72 PF02133 Transp_cyt_pur: Perme 94.4 0.053 1.2E-06 52.8 4.7 48 15-63 72-119 (440)
73 PRK09395 actP acetate permease 94.4 6.4 0.00014 39.6 27.9 89 12-109 130-218 (551)
74 KOG3832 Predicted amino acid t 94.2 0.11 2.5E-06 44.1 5.6 146 14-167 130-299 (319)
75 TIGR03648 Na_symport_lg probab 94.0 7.5 0.00016 39.1 26.3 88 12-108 93-180 (552)
76 PRK10484 putative transporter; 93.2 10 0.00022 38.0 26.3 94 12-109 99-197 (523)
77 COG4147 DhlC Predicted symport 91.8 13 0.00029 36.1 20.6 175 12-203 102-293 (529)
78 COG1953 FUI1 Cytosine/uracil/t 90.3 19 0.00042 35.3 23.4 190 140-342 239-453 (497)
79 TIGR00796 livcs branched-chain 88.0 25 0.00055 33.5 22.5 136 161-315 201-347 (378)
80 PF05525 Branch_AA_trans: Bran 83.5 45 0.00098 32.3 19.6 117 185-315 230-353 (427)
81 TIGR00796 livcs branched-chain 82.9 7 0.00015 37.2 8.5 68 14-90 255-322 (378)
82 PF02554 CstA: Carbon starvati 77.8 11 0.00023 35.6 7.6 124 14-167 114-237 (376)
83 TIGR01197 nramp NRAMP (natural 77.5 69 0.0015 30.7 22.7 80 14-103 64-145 (390)
84 COG4145 PanF Na+/panthothenate 76.6 71 0.0015 30.4 22.1 87 12-107 104-190 (473)
85 PF05525 Branch_AA_trans: Bran 72.8 9.1 0.0002 37.0 6.1 67 15-90 262-328 (427)
86 PF00209 SNF: Sodium:neurotran 72.2 1.1E+02 0.0024 30.6 18.1 83 85-167 191-276 (523)
87 COG0733 Na+-dependent transpor 67.7 1.2E+02 0.0027 29.4 22.0 48 12-64 73-120 (439)
88 COG1114 BrnQ Branched-chain am 66.1 14 0.00031 35.2 5.7 67 15-90 264-330 (431)
89 PF05805 L6_membrane: L6 membr 60.7 30 0.00065 29.5 6.1 65 289-353 44-118 (195)
90 KOG1288 Amino acid transporter 54.6 2.7E+02 0.0058 29.0 16.2 55 141-200 294-348 (945)
91 KOG1291 Mn2+ and Fe2+ transpor 52.8 2.4E+02 0.0051 27.7 17.9 55 262-316 354-410 (503)
92 COG0814 SdaC Amino acid permea 48.2 2.6E+02 0.0057 27.0 16.7 139 181-319 225-377 (415)
93 PF02468 PsbN: Photosystem II 46.7 26 0.00056 21.9 2.6 28 181-208 3-30 (43)
94 PHA02680 ORF090 IMV phosphoryl 43.9 51 0.0011 24.0 4.1 62 144-212 14-76 (91)
95 PRK15433 branched-chain amino 43.4 58 0.0013 31.7 5.8 66 15-90 266-331 (439)
96 PF00689 Cation_ATPase_C: Cati 42.0 27 0.00057 29.1 3.1 28 268-295 128-155 (182)
97 CHL00020 psbN photosystem II p 41.7 22 0.00048 22.1 1.8 28 181-208 3-30 (43)
98 PRK13183 psbN photosystem II r 40.7 25 0.00055 22.2 1.9 29 180-208 5-33 (46)
99 PRK15015 carbon starvation pro 36.6 1.8E+02 0.0039 29.9 8.2 42 14-56 145-186 (701)
100 PF07954 DUF1689: Protein of u 35.9 1.2E+02 0.0026 24.8 5.8 60 294-353 34-94 (152)
101 PRK15433 branched-chain amino 35.5 4.3E+02 0.0094 25.8 14.4 116 185-315 234-356 (439)
102 KOG2083 Na+/K+ symporter [Inor 34.7 1.6E+02 0.0035 29.8 7.3 52 141-197 223-274 (643)
103 CHL00182 tatC Sec-independent 34.7 2.3E+02 0.0049 25.3 7.9 95 220-317 75-191 (249)
104 PRK09928 choline transport pro 31.7 6.1E+02 0.013 26.4 19.0 92 14-107 174-270 (679)
105 PF07086 DUF1352: Protein of u 31.5 2E+02 0.0044 24.4 6.6 50 307-356 83-132 (186)
106 PF05767 Pox_A14: Poxvirus vir 30.4 73 0.0016 23.4 3.2 59 143-209 13-72 (92)
107 KOG1289 Amino acid transporter 30.1 5.3E+02 0.012 25.9 10.1 47 15-62 326-372 (550)
108 PHA02898 virion envelope prote 29.2 52 0.0011 24.0 2.3 62 143-212 13-75 (92)
109 KOG4812 Golgi-associated prote 27.3 1E+02 0.0022 27.1 4.2 76 274-353 162-253 (262)
110 COG1292 BetT Choline-glycine b 27.0 3.3E+02 0.0071 27.3 8.0 49 15-65 176-224 (537)
111 COG4478 Predicted membrane pro 25.9 2.8E+02 0.0062 23.6 6.4 69 287-355 83-153 (210)
112 PRK04949 putative sulfate tran 25.2 4.9E+02 0.011 23.2 11.5 52 179-231 26-78 (251)
113 COG3125 CyoD Heme/copper-type 23.5 3.5E+02 0.0076 20.9 8.8 60 263-322 15-77 (111)
114 cd08765 Cyt_b561_CYBRD1 Verteb 23.3 2.4E+02 0.0052 23.1 5.5 67 177-246 44-111 (153)
115 PF04835 Pox_A9: A9 protein co 23.2 1.2E+02 0.0026 19.9 2.9 28 183-210 25-52 (54)
116 PRK11026 ftsX cell division AB 20.8 5.1E+02 0.011 23.9 7.9 28 327-354 279-306 (309)
117 COG5052 YOP1 Protein involved 20.4 5.3E+02 0.011 21.8 8.0 23 298-320 61-83 (186)
118 KOG2466 Uridine permease/thiam 20.4 2.1E+02 0.0046 28.3 5.3 161 27-198 341-513 (572)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6.1e-49 Score=381.44 Aligned_cols=335 Identities=15% Similarity=0.205 Sum_probs=267.7
Q ss_pred cccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCC--CC-ccchhhHHHHHHHHHHHH
Q 018064 11 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP--CK-EIKLSYFIMIFASVHFVL 87 (361)
Q Consensus 11 ~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~i~~~~~lpl 87 (361)
++.+||+|++++++|| +|++++++++.+.++|+|++|+++++|+++.+++.....+ .. ..++..+.++..++++|+
T Consensus 118 ~~~~sY~~la~~~~G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPL 196 (467)
T PTZ00206 118 TNIRTYEGVARVLLGP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPL 196 (467)
T ss_pred CCCCCHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhc
Confidence 4456999999999997 6779999999999999999999999999998876421100 00 112334455667788999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcc---cccc---ccccccchhhHHHHHHhHHHHccCccchH
Q 018064 88 SHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVA---YGYK---AKTAAGTVFNFFSALGDVAFAYAGHNVVL 161 (361)
Q Consensus 88 ~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~ 161 (361)
+++|++++|+++|.+++.+++..++.+++.++.++.+++.+ .+.+ +........+.+.++|+++|||.||.+.|
T Consensus 197 s~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~ 276 (467)
T PTZ00206 197 VIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAY 276 (467)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhH
Confidence 99999999999999999876665555555555444333211 1110 01111222468899999999999999999
Q ss_pred hhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCC-CCchHHHHHHHHHHHHHHHHhhc
Q 018064 162 EIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQ 240 (361)
Q Consensus 162 ~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~-~~~~~~~~~~~~~~~i~~~~s~p 240 (361)
|+++|| +||+.+++.++...++.++.++|..+|++||+.||++++++++.|+ |.++....++++++.+.++.+||
T Consensus 277 ~i~~~M----~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~syp 352 (467)
T PTZ00206 277 EVYMDM----TNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYA 352 (467)
T ss_pred HHHHhh----cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhh
Confidence 999999 7777777779999999999999999999999999999999999999 55677788899999999999999
Q ss_pred cccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHh---C
Q 018064 241 IYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIY---K 317 (361)
Q Consensus 241 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~---~ 317 (361)
++.+|+|+.+++.+..+.+. .+++++...+..+.+.++++|+.+|+++.+++++||++++.++|++|+++|++.. +
T Consensus 353 L~~~p~r~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~ 431 (467)
T PTZ00206 353 LLGMACRNALYDVIGWDARK-VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTW 431 (467)
T ss_pred hhhhhHHHHHHHHhCCCccc-CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccH
Confidence 99999999999987443222 2345666666777778899999999999999999999999999999999999842 2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018064 318 PRKYSLSWCINWICIVLGLCLMILSPIGGLRQII 351 (361)
Q Consensus 318 ~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li 351 (361)
++...++++.+++++++|++..+.|||.|+.+.+
T Consensus 432 ~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 432 QKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 2223335568999999999999999999999876
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-48 Score=360.11 Aligned_cols=324 Identities=21% Similarity=0.344 Sum_probs=288.0
Q ss_pred ccccHHHHHHHh----------cCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHH
Q 018064 12 RFDRYHELGQHA----------FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA 81 (361)
Q Consensus 12 ~~~sy~~l~~~~----------~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (361)
...+|+|.++.+ +|+ ++|.+++..+.++++|.|++|++++++++.++.+... ..+++.+.|+++..
T Consensus 112 ~~~~y~~~~~~a~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~---~~~~s~~~~i~~~~ 187 (449)
T KOG1304|consen 112 PSLDYAETAESAMEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS---PGVLSVRLYILIQL 187 (449)
T ss_pred ccccHHHHHHHHHcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC---CCCccHHHHHHHHH
Confidence 346888887766 454 5689999999999999999999999999999998422 24688999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchH
Q 018064 82 SVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVL 161 (361)
Q Consensus 82 ~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~ 161 (361)
+..+|+++.||+|.|+++|.++.++.+....+++++.+.+.. + .++......+.+++..+|+.+|||+++.++.
T Consensus 188 ~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~-----~~~~~~~~~~~~~~lf~GtaifafEGig~VL 261 (449)
T KOG1304|consen 188 PPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-P-----TSDLPAVTGWSGLPLFFGTAIFAFEGIGMVL 261 (449)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-C-----ccccccccchhhhHHHHHHHHHHhccceEEE
Confidence 999999999999999999999999988888777777666543 1 1123334557899999999999999999999
Q ss_pred hhhhcCCCCCCCCCCccC-cchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCCchHHHHHHHHHHHHHHHHhhc
Q 018064 162 EIQATIPSTPEKPSKGPM-WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQ 240 (361)
Q Consensus 162 ~i~~~m~~~~~~p~~~~~-~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~p 240 (361)
|++++| |+|+++.. .+++..++.++.++|+.+|.+||+.||+++++.++.|+|+ +++.+.+++++++.+..+||
T Consensus 262 PlEn~M----k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~p 336 (449)
T KOG1304|consen 262 PLENSM----KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYP 336 (449)
T ss_pred ehhhcc----cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCc
Confidence 999999 88988652 2677899999999999999999999999999999999998 89999999999999999999
Q ss_pred cccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHhCCCC
Q 018064 241 IYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK 320 (361)
Q Consensus 241 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~~ 320 (361)
++++|..+++|+.+.++.+.+++++..+..|..+++++..+|..+||++.+++++||++++.+++++|+++++..++.+.
T Consensus 337 LQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~ 416 (449)
T KOG1304|consen 337 LQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEG 416 (449)
T ss_pred hhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccc
Confidence 99999999999999888776667788899999999999999999999999999999999999999999999999998765
Q ss_pred ---chhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018064 321 ---YSLSWCINWICIVLGLCLMILSPIGGLRQI 350 (361)
Q Consensus 321 ---~~~~~~~~~~i~~~g~~~~v~gt~~si~~l 350 (361)
.+|+++.+.+++++|+++++.|||.|++++
T Consensus 417 ~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 417 KGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred cCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 356778999999999999999999999874
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-46 Score=352.15 Aligned_cols=341 Identities=45% Similarity=0.854 Sum_probs=300.7
Q ss_pred ccccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHH
Q 018064 2 VEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA 81 (361)
Q Consensus 2 ~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (361)
.|+|++.+++|.++|.|+|+++||+|. ++++.+++.+.++|+|++|++..+|++..+.+..+.+.. ..+.+.|++++.
T Consensus 93 ~~~~~~~~~~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~l~~~~f~iif~ 170 (437)
T KOG1303|consen 93 WEMHEAVPGKRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-SLDKQYFIIIFG 170 (437)
T ss_pred HHhccCCCCccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cccceehhhhHH
Confidence 578999999999999999999999876 899999999999999999999999999999998774322 345678999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcc-ccccccccccchhhHHHHHHhHHHHccCccch
Q 018064 82 SVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVA-YGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 160 (361)
Q Consensus 82 ~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 160 (361)
++.+|++++||++.++++|..+.+.+..+..+.+..+..+|..++.. .+..+. ......++++|++.|+|++|.++
T Consensus 171 ~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~---~~~~~~f~a~g~iaFaf~gH~v~ 247 (437)
T KOG1303|consen 171 LIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL---GTIPTVFTALGIIAFAYGGHAVL 247 (437)
T ss_pred HHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC---CCCcchhhhhhheeeeecCCeee
Confidence 99999999999999999999999998888888888888777544322 111111 11111179999999999999999
Q ss_pred HhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCCchHHHHHHHHHHHHHHHHhhc
Q 018064 161 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQ 240 (361)
Q Consensus 161 ~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~p 240 (361)
||+|++| |+|.++ +|++.+++.+++.+|...++.||++|||+++|+++.|++++.|....+++++.+|++.++.
T Consensus 248 peIq~tM----k~p~~f--~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~ 321 (437)
T KOG1303|consen 248 PEIQHTM----KSPPKF--KKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQ 321 (437)
T ss_pred eehHhhc----CCchhh--hhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhh
Confidence 9999999 777775 4999999999999999999999999999999999999976789999999999999999999
Q ss_pred cccccHHHHHHHHHhhhcC-CC-cchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHhCC
Q 018064 241 IYAMPVFDMIETLLVKKLN-FS-PTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 318 (361)
Q Consensus 241 l~~~p~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~ 318 (361)
....|..+.+|+....+.+ .. +....|.+.|+.+++.+.++|+.+|.|+++++++||+...++++++|+++|++.+|.
T Consensus 322 i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~ 401 (437)
T KOG1303|consen 322 IYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKP 401 (437)
T ss_pred hhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999986644 22 355699999999999999999999999999999999999999999999999999888
Q ss_pred CCchhhHHHHHHH-HHHHHHHHHHHhHHHHHHHHHh
Q 018064 319 RKYSLSWCINWIC-IVLGLCLMILSPIGGLRQIILQ 353 (361)
Q Consensus 319 ~~~~~~~~~~~~i-~~~g~~~~v~gt~~si~~li~~ 353 (361)
++...+|++++.+ +++|+++++....+++++++.+
T Consensus 402 ~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 402 KRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 8888888899888 8999999999999999998753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.6e-47 Score=368.26 Aligned_cols=339 Identities=27% Similarity=0.486 Sum_probs=283.4
Q ss_pred ccccccCC-CcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHH
Q 018064 2 VEMHEMVP-GKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIF 80 (361)
Q Consensus 2 ~~~~~~~~-~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 80 (361)
+|+++..+ +++..+|+|++++++||++ ++++++++.+.++|.|++|++..+|++.++.+...++ ...++..+.++.
T Consensus 55 ~~~~~~~~~~~~~~~y~~l~~~~~G~~~-~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~i~ 131 (409)
T PF01490_consen 55 VRAANAMPNGTGRRSYGDLARRAFGPKG-KWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD--LFISRYVWIIIF 131 (409)
T ss_pred hccccccccccccccccccccccccccc-cccccchheeccccccceeEEEeeeeeeccccccccc--cccccccccccc
Confidence 34544443 5677899999999999865 6999999999999999999999999999998875532 246777888888
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccch
Q 018064 81 ASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 160 (361)
Q Consensus 81 ~~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 160 (361)
.++++|++++|++++++++|.++.++.+..+++.++........++.+...++.....++.+++.++|+++|+|.||+++
T Consensus 132 ~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~ 211 (409)
T PF01490_consen 132 ALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNL 211 (409)
T ss_pred ccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhccccc
Confidence 89999999999999999999999997665322222222222222222212112234456789999999999999999999
Q ss_pred HhhhhcCCCCCCCCCC-ccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCCchHHHHHHHHHHHHHHHHhh
Q 018064 161 LEIQATIPSTPEKPSK-GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSY 239 (361)
Q Consensus 161 ~~i~~~m~~~~~~p~~-~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~ 239 (361)
||+++|| |+|++ ++++++...++.+++++|..+|+.||+.||+++++|+++|++++++...++++++.++++.++
T Consensus 212 ~~i~~~m----~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~ 287 (409)
T PF01490_consen 212 PPIQSEM----KDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSY 287 (409)
T ss_pred ceeeeec----cCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhcc
Confidence 9999999 77877 567799999999999999999999999999999999999999877888999999999999999
Q ss_pred ccccccHHHHHHHHHhhh--------cCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHH
Q 018064 240 QIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCII 311 (361)
Q Consensus 240 pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~ 311 (361)
|++.+|.++.+++.+.++ .+.+.++.+|..+|+.++..+.++|+.+||++++++++||++++.++|++|+++
T Consensus 288 pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~ 367 (409)
T PF01490_consen 288 PLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALL 367 (409)
T ss_pred ccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHH
Confidence 999999999999998763 122345678999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchhhH-----HHHHHHHHHHHHHHHHHhHHHH
Q 018064 312 WLAIYKPRKYSLSW-----CINWICIVLGLCLMILSPIGGL 347 (361)
Q Consensus 312 ~~~~~~~~~~~~~~-----~~~~~i~~~g~~~~v~gt~~si 347 (361)
|++.+++++.+.++ .+++..+++|+++.+.|||.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 368 YLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 99999887644333 3478899999999999999886
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=8.5e-41 Score=323.26 Aligned_cols=325 Identities=17% Similarity=0.281 Sum_probs=267.5
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 93 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l 93 (361)
.+|.|+++..+||+|+ .+..+...+++++.|+.|.+..++++..+- ++++.+.|++++.++.+|++++|++
T Consensus 120 ~~~~e~~~~~~G~~~~-~~~~~~~~v~l~~~~v~~li~~~~~~~~l~--------~~~~~~~~~~i~~~v~~~~~~i~sl 190 (473)
T PLN03074 120 IQWFEVLDGLLGPYWK-NVGLAFNCTFLLFGSVIQLIACASNIYYIN--------DNLDKRTWTYIFGACCATTVFIPSF 190 (473)
T ss_pred HHHHHHHHHhcChhHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhhhC--------CCcCCCeEEeehHHHHHHHHHccCH
Confidence 3789999999998664 788889999999999999998887766541 2467788999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCC
Q 018064 94 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 173 (361)
Q Consensus 94 ~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 173 (361)
|+++++|.+|+.+++...+.++..+...+..++.+.+ .+.+...++.+.++++|+|++|.++||+++|| ||
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~ 261 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WK 261 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-----CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cC
Confidence 9999999999997665444444444444433322211 22345677788889999999999999999999 89
Q ss_pred CCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchh--hhhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHH
Q 018064 174 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 251 (361)
Q Consensus 174 p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 251 (361)
|++++ ++...+...+..+|..+|+.||+.|||++++ +.+.|+|.+.+ ..++++++.++++.+||+++.|..+.+|
T Consensus 262 P~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e 338 (473)
T PLN03074 262 PQKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWE 338 (473)
T ss_pred hhccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99987 8888888889999999999999999998764 66778986444 5789999999999999999999999999
Q ss_pred HHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHhCCC------------
Q 018064 252 TLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR------------ 319 (361)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~------------ 319 (361)
+.+..+ ..+....|...|+.+++.+.++|+.+|+|+.+++++||++++.+++++|+++|++.++++
T Consensus 339 ~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~ 416 (473)
T PLN03074 339 KAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPF 416 (473)
T ss_pred HHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcc
Confidence 987543 223466889999999999999999999999999999999999999999999999877553
Q ss_pred -Cchh--hHHHHHHHHHH-HHHHHHHHhHHHHHHHHHhhhcccCCC
Q 018064 320 -KYSL--SWCINWICIVL-GLCLMILSPIGGLRQIILQAKDYKFYS 361 (361)
Q Consensus 320 -~~~~--~~~~~~~i~~~-g~~~~v~gt~~si~~li~~~~~~~~~~ 361 (361)
.+++ ..+.|+.++++ |+++.+.|||.|+++++++.++++.|.
T Consensus 417 ~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 417 FLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred cCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 1122 23789998875 666579999999999999999988763
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-39 Score=287.74 Aligned_cols=341 Identities=18% Similarity=0.283 Sum_probs=291.7
Q ss_pred ccccccCC--C---cccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhH
Q 018064 2 VEMHEMVP--G---KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYF 76 (361)
Q Consensus 2 ~~~~~~~~--~---~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ 76 (361)
+||..+.. | +.++||-++|..+++|+.|-+.+.+.+.+.+..+|+-|.+..||.+.+.++.. ..+.+-|
T Consensus 168 i~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~------svd~~sW 241 (524)
T KOG4303|consen 168 IECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL------SVDKASW 241 (524)
T ss_pred hhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC------Cccccch
Confidence 45555433 3 24679999999999999887889999999999999999999999999876642 3677889
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccC
Q 018064 77 IMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG 156 (361)
Q Consensus 77 ~~i~~~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~ 156 (361)
+++....++|.+++|++|..+.+|.++.++.+..-.+++.++...-. +++++......+..+++.++|+++|+|..
T Consensus 242 m~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~----dW~wskv~Fsidi~~fPisvG~iVFsYTS 317 (524)
T KOG4303|consen 242 MMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVS----DWSWSKVTFSIDINTFPISVGMIVFSYTS 317 (524)
T ss_pred hhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccceeEEEEEEcccCceEEEEEEEeeec
Confidence 99999999999999999999999999999877665555555554321 23333334455667888999999999999
Q ss_pred ccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCCchHHHHHHHHHHHHHHH
Q 018064 157 HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVI 236 (361)
Q Consensus 157 ~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~ 236 (361)
|..+|++..+| +||+++. ..+.++-+...++-..+|..||++||+++|..|++|+|+.+ ....+++.+++..+
T Consensus 318 qIFLP~LEGNM----~~ps~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs-fk~~VN~fLV~KAL 390 (524)
T KOG4303|consen 318 QIFLPNLEGNM----KNPSQFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS-FKILVNLFLVVKAL 390 (524)
T ss_pred eeecccccccc----CChhHhe--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc-hhhhhhHHHHHHHH
Confidence 99999999999 8999998 77889999999999999999999999999999999999744 66789999999999
Q ss_pred HhhccccccHHHHHHHHHhhhcC---CC-------cchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHH
Q 018064 237 GSYQIYAMPVFDMIETLLVKKLN---FS-------PTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYF 306 (361)
Q Consensus 237 ~s~pl~~~p~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~fi 306 (361)
.|||+-.+.+.+.+|+-+.+..+ ++ .-+.+....|+.+++.+.++|+.+|.+...++++|++.|+.++|+
T Consensus 391 LSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFi 470 (524)
T KOG4303|consen 391 LSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFI 470 (524)
T ss_pred HcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHH
Confidence 99999999999999999876532 11 113345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcccC
Q 018064 307 LPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKF 359 (361)
Q Consensus 307 lP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~~~~~~~ 359 (361)
+|++||+++.++.....++..+..++++|..+++.|.|.|.+++++..+....
T Consensus 471 wP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 471 WPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred HHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 99999999998876667788999999999999999999999999999886543
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-37 Score=288.54 Aligned_cols=328 Identities=21% Similarity=0.298 Sum_probs=273.7
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCC-C-cc-chhh-HHHHHHHHHHHHhcC
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPC-K-EI-KLSY-FIMIFASVHFVLSHL 90 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~-~-~~-~~~~-~~~i~~~~~lpl~~~ 90 (361)
+|++++++++|+ .|+...++.......| |++|++.++|.++.........+. . +| ++.. +.++...+++|+++.
T Consensus 68 ty~~l~~~~~g~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~ 145 (411)
T KOG1305|consen 68 TYSSLGDLIFGK-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLL 145 (411)
T ss_pred CHHHHHHHHcCC-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHH
Confidence 999999999997 5677777777777777 799999999999976655431111 0 12 3334 577788899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhhhccc-CCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCC
Q 018064 91 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 169 (361)
Q Consensus 91 ~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 169 (361)
|++.+|++.|.++..+++.++.++++.....+. .++..+ ......++.+.+.++++++|+|.||++..|+++||
T Consensus 146 k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El-- 220 (411)
T KOG1305|consen 146 KNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSY---LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL-- 220 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccc---ccCCcchhhhhhhhhhhhheeeeccccceeeeeee--
Confidence 999999999999999888777777666655332 111111 12222333689999999999999999999999999
Q ss_pred CCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCCchH------HHHHHHHHHHHHHHHhhcccc
Q 018064 170 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW------LIVMANFFVVVHVIGSYQIYA 243 (361)
Q Consensus 170 ~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~~~~------~~~~~~~~~~i~~~~s~pl~~ 243 (361)
+||++++++++...+...+.++|...|+.||+.||+++.+|++.|++..+. ....++..+.++++.++|+..
T Consensus 221 --~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~ 298 (411)
T KOG1305|consen 221 --KDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVL 298 (411)
T ss_pred --eCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999985332 247899999999999999999
Q ss_pred ccHHHHHHHHHhhhcCC--CcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHhCCCCc
Q 018064 244 MPVFDMIETLLVKKLNF--SPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKY 321 (361)
Q Consensus 244 ~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~~~ 321 (361)
+|+|..+++.+.++... +.++.++.+++..+...+.+.|+.+|+++.+++++||+++..++|++|+++|++.+|+ +
T Consensus 299 fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~ 376 (411)
T KOG1305|consen 299 FPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--K 376 (411)
T ss_pred chHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--c
Confidence 99999999988776442 3567788999999999999999999999999999999999999999999999999887 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018064 322 SLSWCINWICIVLGLCLMILSPIGGLRQIILQ 353 (361)
Q Consensus 322 ~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~ 353 (361)
.+++...+...++|+...+.|+...+.++..+
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 377 SREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567888899999999999999988888765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-24 Score=207.05 Aligned_cols=324 Identities=16% Similarity=0.188 Sum_probs=234.6
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 93 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l 93 (361)
.+|.|++++.+||+|+ ++.++...+.+++.+.+|.+..+|.+++.+++..+.+ +.+|..+.+++..++.++++.++.
T Consensus 72 ~~~~~~~~~~~G~~~~-~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~--~~~r~~~~lif~~~~~~l~~~~~~ 148 (415)
T COG0814 72 ASITSLVEDYLGKKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN--PLPRKLGSLIFALVLAFLSWLGTL 148 (415)
T ss_pred ccHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC--CcchHHHHHHHHHHHHHHHHhchh
Confidence 5999999999999765 9999999999999999999999999999999755321 267888888999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCC
Q 018064 94 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 173 (361)
Q Consensus 94 ~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 173 (361)
..++..|.+....+..++....+.... . .++.....+... +..+.++..++|++.|+|+||+++|++++|| ++
T Consensus 149 ~~lk~ts~l~~~~v~~~~~l~~~~~~~-~-~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~ 221 (415)
T COG0814 149 AVLKITSLLVFGKVIYLVLLVVYLIPH-W-NPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RK 221 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-c-CHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHh----cc
Confidence 999999999988765544444332211 1 111101111111 3667889999999999999999999999999 55
Q ss_pred CCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCCchHH-------------HHHHHHHHHHHHHHhhc
Q 018064 174 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL-------------IVMANFFVVVHVIGSYQ 240 (361)
Q Consensus 174 p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~~~~~-------------~~~~~~~~~i~~~~s~p 240 (361)
+++++.+|+..++..+..++|...+..+|..+|+.+.++++++.++++.. ....++.-.+.+..||-
T Consensus 222 ~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 222 NSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 55545679999999999999999999999999999999999999764432 22333333333334333
Q ss_pred cccccHHHHHHHHHhhhcCC--C-cchh-hHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHh
Q 018064 241 IYAMPVFDMIETLLVKKLNF--S-PTRL-LRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIY 316 (361)
Q Consensus 241 l~~~p~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~ 316 (361)
-.....++..++.+.++++. + ..+. ......+.........+...|..+.+++.+|+.....+.++.|...+.+..
T Consensus 302 gv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~ 381 (415)
T COG0814 302 GVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP 381 (415)
T ss_pred CchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33333344445554431111 1 1111 222333344556677888889999999999999999999999998887766
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhHHHH
Q 018064 317 KPRKYSLSWCINWICIVLGLCLMILSPIGGL 347 (361)
Q Consensus 317 ~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si 347 (361)
..++.+.++....+++++|+.......+...
T Consensus 382 ~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 382 ALKVYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred ceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 5554433225788888999888877666543
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.77 E-value=3.7e-17 Score=156.00 Aligned_cols=288 Identities=12% Similarity=0.082 Sum_probs=204.2
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 92 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~ 92 (361)
..++.+.+++++||.+| +++.+...+.+++.+.+|.+..++.+...++.+... +.++....+++..++.++. .+.
T Consensus 58 ~~~~~~~~~~~~G~~~g-~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~v~~~l~-~~G 132 (381)
T TIGR00837 58 GASFNTIAKDLLGKTGN-IIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF---PWSARAIVLIFTVLFGSFV-WLS 132 (381)
T ss_pred CCCHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHH-Hhc
Confidence 45899999999998554 899999999999999999999999999988764421 2344444444444444444 445
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCCC
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 172 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 172 (361)
.|...+++.+.+...+....+.......+...+ ... +.......+.++..+++...++|++|.+++++.+|+ +
T Consensus 133 ~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~--~~~-~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~ 205 (381)
T TIGR00837 133 TSAVDRITRVLIFGKIIAFALVFSGLLPHVKGD--LLL-DVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----D 205 (381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH--HHh-cCccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----c
Confidence 677777777776655443333333223221111 011 100112345678899999999999999999999998 5
Q ss_pred CCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchh----------h---hhhC-CCCchHHHHHHHHHHHHHHHHh
Q 018064 173 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED----------N---ILLS-LEKPTWLIVMANFFVVVHVIGS 238 (361)
Q Consensus 173 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~----------~---il~n-~~~~~~~~~~~~~~~~i~~~~s 238 (361)
++ +++.+|++..+..++.++|.+.........+.+.-+ + ...+ .+ +.+...+......+++..|
T Consensus 206 ~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~v~~~~~~al~tS 283 (381)
T TIGR00837 206 GN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLK-SSAIELALELFSNFALASS 283 (381)
T ss_pred cC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHH
Confidence 45 445679999999999999998877666665533211 1 1111 22 3456677888888999999
Q ss_pred hccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCchh-hHHHHhhhhhhhHHHHHHHHHHHHHHhC
Q 018064 239 YQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFG-GLLGFFGGFAFAPTTYFLPCIIWLAIYK 317 (361)
Q Consensus 239 ~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~-~v~~l~Ga~~~~~~~filP~l~~~~~~~ 317 (361)
+.-.....++...+.++++++. .+|.....+..+++.++|...|+.. ..++..| +.+..+.+++|++++++.||
T Consensus 284 ~~g~~l~~~d~l~~~~~~~~~~----~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~ 358 (381)
T TIGR00837 284 FLGVTLGLFDYLADLFKFDDSK----KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARK 358 (381)
T ss_pred HHHHHHHHHHHHHHHhCCCccc----CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888764322 2345566677788899999999876 8999999 88999999999999999887
Q ss_pred CC
Q 018064 318 PR 319 (361)
Q Consensus 318 ~~ 319 (361)
++
T Consensus 359 ~~ 360 (381)
T TIGR00837 359 KF 360 (381)
T ss_pred cC
Confidence 63
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.75 E-value=3.7e-16 Score=148.62 Aligned_cols=309 Identities=15% Similarity=0.218 Sum_probs=207.3
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 92 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~ 92 (361)
..+|.+++++.+||++ +++..+...+..++.+++|..-.++.+++.++...+ .+.++..-.+++.++.-.+... .
T Consensus 64 ~~~~~~~a~~~lG~~g-~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~---~~~~~~~~~~~f~~i~~~iv~~-g 138 (394)
T PF03222_consen 64 GSSLTSMAEKYLGKKG-GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG---TDLSPWLSSLLFTIIFGGIVYF-G 138 (394)
T ss_pred CCCHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHh-h
Confidence 5699999999999865 599999999999999999999999999999887653 2344444333333333222222 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCCC
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 172 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 172 (361)
.|.....+.+-+...+............+ .+.+.-.+......++...+.++|+..++|+.|+++|++.+.++ +
T Consensus 139 ~~~v~~~n~~lv~~~i~~~~~l~~~~~p~---~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~ 212 (394)
T PF03222_consen 139 TKAVDRINRVLVFGMIISFIILVVYLIPH---WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---G 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---c
Confidence 23444444444443332222222222211 11110001122346678889999999999999999999999994 3
Q ss_pred CCCCccCcchhhhHHHHHHHHHHhHh--hHHHh---------hccCcchh--hhhhCCCCchHHHHHHHHHHHHHHHHhh
Q 018064 173 KPSKGPMWRGVVVAYIVVALCYFPVA--LIGYW---------MFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSY 239 (361)
Q Consensus 173 ~p~~~~~~~~~~~a~~~~~~~Y~~~g--~~gy~---------~fG~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~~s~ 239 (361)
|++| .+|++.++..+..++|+..- +.|-+ ..|++..+ ..+.+...+.+....+.+.-.+++.+||
T Consensus 213 d~~k--~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSF 290 (394)
T PF03222_consen 213 DPKK--IRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSF 290 (394)
T ss_pred cHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 4444 44999999888888888653 33311 11212111 2334444445677788999999999999
Q ss_pred ccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhhhhhhhHHHHHHHHHHHHHHhCC
Q 018064 240 QIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 318 (361)
Q Consensus 240 pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~ 318 (361)
--.....++.+++.++.+++ ...|.........++.++|...|+ |-..+++.| ...+.+..++|+++.++.|++
T Consensus 291 lGv~lgl~d~l~d~~k~~~~----~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~ 365 (394)
T PF03222_consen 291 LGVYLGLFDFLADLFKLKNN----SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKR 365 (394)
T ss_pred HHHHHHHHHHHHHHHcCCcc----ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999876322 224444556667788999999985 789999999 999999999999999999877
Q ss_pred CCchh-----hHHHHHHHHHHHHHHH
Q 018064 319 RKYSL-----SWCINWICIVLGLCLM 339 (361)
Q Consensus 319 ~~~~~-----~~~~~~~i~~~g~~~~ 339 (361)
++.+. .+.....++++|++..
T Consensus 366 ~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 366 KPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred cCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 64321 3345555555555543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.68 E-value=9.4e-15 Score=138.58 Aligned_cols=307 Identities=12% Similarity=0.118 Sum_probs=204.5
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 92 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~ 92 (361)
..++.+++++.+||+++ ++..+...+..+..+.+|..-.|+.+.+.++++.+.+ .+.....+.+.++.-...+. .
T Consensus 64 ~~~~~~~a~~~LG~~g~-~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~---i~~~~~~l~F~~~~~~iv~~-g 138 (403)
T PRK15132 64 DTGLGTLAKRYLGRYGQ-WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS---MSPTAGVLLFTLVAGGVVCV-G 138 (403)
T ss_pred CCCHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC---CChHHHHHHHHHHHHHHHhc-c
Confidence 45899999999998754 9999999999999999999999999999988754322 23333333333332222222 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcccc-ccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCC
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYG-YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTP 171 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 171 (361)
.|..-+++.+=+...+........... |+.+.+ ..+. +.+....+.++|++.++|+.|+++|++.+.++
T Consensus 139 ~~~v~~~n~~L~~~~ii~~~~~~~~l~-----p~~~~~~L~~~--~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~--- 208 (403)
T PRK15132 139 TSSVDLFNRFLFSAKIIFLVVMLALMM-----PHIHKVNLLTL--PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMG--- 208 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCHHHHhcC--CccccHHHHHHHHHHHHhhCCcccHHHHHHhC---
Confidence 233333333332222221111111111 111111 1001 11112478999999999999999999999983
Q ss_pred CCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcc-----hh-----hhhhCC---CCchHHHHHHHHHHHHHHHHh
Q 018064 172 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-----ED-----NILLSL---EKPTWLIVMANFFVVVHVIGS 238 (361)
Q Consensus 172 ~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~-----~~-----~il~n~---~~~~~~~~~~~~~~~i~~~~s 238 (361)
+|++| .+|++.++..+..++|+..=......-+.+. ++ ++++.+ .++.+...++.+.-.+++.+|
T Consensus 209 ~~~~~--~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TS 286 (403)
T PRK15132 209 GNIRK--LRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATS 286 (403)
T ss_pred cCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 34444 4599999999999988866555544433221 11 222222 234567778888889999999
Q ss_pred hccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhhhhhhhHHHHHHHHHHHHHHhC
Q 018064 239 YQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 317 (361)
Q Consensus 239 ~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~~~filP~l~~~~~~~ 317 (361)
|--.....+|.+.+.++++++. ..|.....+..+++.++|...|+ |...+++.|. ..+.+.+++|+++-++.++
T Consensus 287 FlGv~lgl~d~l~d~~~~~~~~----~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~ 361 (403)
T PRK15132 287 FLGVALGLFDYLADLFQRRNTV----GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRK 361 (403)
T ss_pred HHHHHHHHHHHHHHHHccCccc----cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998765332 23566667788899999999996 7889999886 5789999999999999987
Q ss_pred CC-C--ch--hhHHHHHHHHHHHHHHHHH
Q 018064 318 PR-K--YS--LSWCINWICIVLGLCLMIL 341 (361)
Q Consensus 318 ~~-~--~~--~~~~~~~~i~~~g~~~~v~ 341 (361)
++ . .+ ..+..+++.+++|++..+.
T Consensus 362 ~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 362 QNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred cCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 54 1 11 1446677777777776654
No 12
>PRK10483 tryptophan permease; Provisional
Probab=99.67 E-value=1.8e-14 Score=136.23 Aligned_cols=312 Identities=14% Similarity=0.115 Sum_probs=203.3
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+..++.+++++.+||+ |+.+..++..+..++.+++|+.-.||.+++.+++ .+. +.++..-.+++.++.-.+.+..
T Consensus 71 ~g~~~~tma~~~LG~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~---~i~~~~~~llF~~~~~~iv~~g 145 (414)
T PRK10483 71 IGSSFDTITKDLLGKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSL---NVPARAAGFGFALLVAFVVWLS 145 (414)
T ss_pred CCCCHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCC---CCcHHHHHHHHHHHHHHHHHhh
Confidence 3458999999999985 5688889999999999999999999999999876 221 2344444444544444444432
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCC
Q 018064 92 NFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTP 171 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 171 (361)
.|...+++..=....+....+.+.....+ ..++.-.+.+ ......+...+.+++++.++|+.|+++|++.+.++
T Consensus 146 -t~~vd~~n~~l~~~~i~~f~~~~~~l~~~-i~~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~--- 219 (414)
T PRK10483 146 -TKAVSRMTAIVLGAKVITFFLTFGSLLGH-VQPATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG--- 219 (414)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---
Confidence 34444444443333322222221111111 1111000100 11112245678999999999999999999999984
Q ss_pred CCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhc-----------cCcchh--hhhhCCCCchHHHHHHHHHHHHHHHHh
Q 018064 172 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMF-----------GNKVED--NILLSLEKPTWLIVMANFFVVVHVIGS 238 (361)
Q Consensus 172 ~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~f-----------G~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~~s 238 (361)
+|++ +.+|++.++..+..++|+..=......- |++.+. +.+.+..++.+......+.-.+++.+|
T Consensus 220 ~d~~--kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TS 297 (414)
T PRK10483 220 KDPK--TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASS 297 (414)
T ss_pred cCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 4454 4559999999999999987433332222 222211 111221223456667888888999999
Q ss_pred hccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhhhhhhhHHHHHHHHHHHHHHhC
Q 018064 239 YQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 317 (361)
Q Consensus 239 ~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~~~filP~l~~~~~~~ 317 (361)
|--.....+|.+.|.++.+++. ..|.....+..+++.++|...|+ |-..++..|.. ...+.-++|+++.++.||
T Consensus 298 FlGv~LGL~d~l~D~~k~~~~~----~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 298 FLGVTLGLFDYLADLFGFDDSA----MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRK 372 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCcc----ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 9999999999999998866432 24455556778899999999996 88899999966 678889999999999997
Q ss_pred C-CCchh----hHHHHHHHHHHHHHHHHH
Q 018064 318 P-RKYSL----SWCINWICIVLGLCLMIL 341 (361)
Q Consensus 318 ~-~~~~~----~~~~~~~i~~~g~~~~v~ 341 (361)
+ .+... .+....+++++|+...+.
T Consensus 373 ~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~ 401 (414)
T PRK10483 373 RFGSPKFRVWGGKPMIVLILLFGVGNALV 401 (414)
T ss_pred cCCCCCceecCCHHHHHHHHHHHHHHHHH
Confidence 6 22111 223445566666655444
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.65 E-value=3.9e-14 Score=133.84 Aligned_cols=309 Identities=14% Similarity=0.101 Sum_probs=203.2
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+..++.+++|+.+||+ |+.+..+...+..++.+++|+.-.|+.+++.++...+. +.++..-.++++.+.-++.+..
T Consensus 69 ~g~~l~tma~~~LG~~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~---~i~~~~~~llF~~~~~~~v~~g 144 (415)
T PRK09664 69 VGSSFNTITKDLIGNT-WNIISGITVAFVLYILTYAYISANGAIISETISMNLGY---HANPRIVGICTAIFVASVLWIS 144 (415)
T ss_pred CCCCHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC---CCcHHHHHHHHHHHHHHHHHhc
Confidence 3458999999999985 56999999999999999999999999999998753221 2344443444555444444433
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcccc-cccccc-c---cchhhHHHHHHhHHHHccCccchHhhhhc
Q 018064 92 NFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYG-YKAKTA-A---GTVFNFFSALGDVAFAYAGHNVVLEIQAT 166 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~-~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 166 (361)
.|...+.+.+=....+....+.+. ... |+.+.+ ..+..+ . .....+..++|++.++|+.|+++|++.+.
T Consensus 145 -t~~vd~~nr~l~~~~ii~f~~~~~-~l~----~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y 218 (415)
T PRK09664 145 -SLAASRITSLFLGLKIISFVIVFG-SFF----FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC 218 (415)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHH-HHh----hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHH
Confidence 244444444333322221111111 111 111111 101111 1 11335778999999999999999999999
Q ss_pred CCCCCCCCCCccCcchhhhHHHHHHHHHHhH--hhHH---------HhhccCcchh---hhhhCCCCchHHHHHHHHHHH
Q 018064 167 IPSTPEKPSKGPMWRGVVVAYIVVALCYFPV--ALIG---------YWMFGNKVED---NILLSLEKPTWLIVMANFFVV 232 (361)
Q Consensus 167 m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~--g~~g---------y~~fG~~~~~---~il~n~~~~~~~~~~~~~~~~ 232 (361)
++ +|+++.+ |++..+..+..++|..- .+.| ....|++.+. ....+ .++.+......+...
T Consensus 219 ~~---~d~~~~~--kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~ 292 (415)
T PRK09664 219 YG---KRKDKLI--KSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSN 292 (415)
T ss_pred hC---ccHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHH
Confidence 83 4555544 88888888888888532 2222 1223333332 12223 234567778888999
Q ss_pred HHHHHhhccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhhhhhhhHHHHHHHHHH
Q 018064 233 VHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFGGFAFAPTTYFLPCII 311 (361)
Q Consensus 233 i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~~~filP~l~ 311 (361)
+++.+||--......+.+.+.++.+++. ..|...-.+..+++.+.|+..|+ |-..++..|.. ..++.-++|+++
T Consensus 293 ~Ai~TSFlGv~LGL~D~l~D~~~~~~~~----~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM 367 (415)
T PRK09664 293 LAVASSFFGVTLGLFDYLADLFKIDNSH----GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVL 367 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcc----ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999998765332 24555556778899999999997 88899999985 678999999999
Q ss_pred HHHHhCC-CCc----hhhHHHHHHHHHHHHHHHHH
Q 018064 312 WLAIYKP-RKY----SLSWCINWICIVLGLCLMIL 341 (361)
Q Consensus 312 ~~~~~~~-~~~----~~~~~~~~~i~~~g~~~~v~ 341 (361)
-++.||+ ... ...+....+.+++|++..+.
T Consensus 368 ~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 368 AIKARKKFPNQMFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred HHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHH
Confidence 9999976 221 12345666666667665544
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.52 E-value=5.4e-12 Score=119.53 Aligned_cols=328 Identities=12% Similarity=0.069 Sum_probs=206.7
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+..+|.|++++.+|+++| .+..+.-++..+..+.+|...+.+.+.+...++.+. ++.++....+++.+++.......
T Consensus 80 ~~~~i~~v~~~~lG~~g~-~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~--~~~~r~l~slifv~~l~~iv~~G 156 (443)
T PRK13629 80 PSGNITETVEEHFGKTGG-VVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGF--APLNRGFVALFLLLLMAFVIWFG 156 (443)
T ss_pred CCCCHHHHHHHHcChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--CCccHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999876 899999999999999999988888888765554421 12355555555555554444433
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCcc-ccc---cccccccchhhHHHHHHhHHHHccCccchHhhhhcC
Q 018064 92 NFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVA-YGY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 167 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 167 (361)
+ |..-+++..=+...+........+.+.+-..+... .+. ++............++|++.++|+.|+++|++.+.+
T Consensus 157 ~-~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~ 235 (443)
T PRK13629 157 K-DLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSK 235 (443)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 2 44444443333322222211211112111100000 000 000000112357889999999999999999999885
Q ss_pred CCCCC---CCC--CccCcchhhhHHHHHHHHHHhHhhHHHhhccCcc-----hh--hhhhC----CCC---c-----hHH
Q 018064 168 PSTPE---KPS--KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-----ED--NILLS----LEK---P-----TWL 223 (361)
Q Consensus 168 ~~~~~---~p~--~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~-----~~--~il~n----~~~---~-----~~~ 223 (361)
|+.-+ +++ +++.+|++.++..+..++|+..-..+...-+++. ++ +++.. +++ . .+.
T Consensus 236 r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i 315 (443)
T PRK13629 236 REEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITL 315 (443)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHH
Confidence 32101 223 4556688999999998888877666666555332 11 21222 222 1 345
Q ss_pred HHHHHHHHHHHHHHhhccccccHHHHHHHHHhh---hc--CCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhh
Q 018064 224 IVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK---KL--NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGF 298 (361)
Q Consensus 224 ~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~ 298 (361)
.....+.-.+++..||--.....+|.++..+.+ +. +..+++..+.....+..+.+.+++..-|++=+++.-.|+-
T Consensus 316 ~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gP 395 (443)
T PRK13629 316 EYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAP 395 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhH
Confidence 666777778899999999999999999988842 11 1122344455666677788899999999988888866777
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhH
Q 018064 299 AFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPI 344 (361)
Q Consensus 299 ~~~~~~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~ 344 (361)
.-..+.|++|...-+|.-.-++.+ .+..|+.+.++|++......|
T Consensus 396 iia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 396 IIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHHH
Confidence 777889999987766654333222 123688999999887655444
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.47 E-value=4.1e-12 Score=120.87 Aligned_cols=314 Identities=11% Similarity=0.095 Sum_probs=200.4
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 92 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~ 92 (361)
..++.|++++.|||++| .+..+.-.+..+..+.+|....++.+.+.+.+....+ ...+....+...+.+-......
T Consensus 65 ~~~i~~~~~~~fGk~~G-~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~---~p~~~i~~lilv~il~~iv~~G 140 (397)
T TIGR00814 65 CEDITEVVEEHFGKNWG-ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA---PPLRGLLSLALILILVAIMSFG 140 (397)
T ss_pred CCCHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999877 7999999999999999999999999998887654221 1223222222222222333345
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccc-cccchhhHHHHHHhHHHHccCccchHhhhhcCCCCC
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTP 171 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 171 (361)
.+.+.+++.+-+...+............+...+. ....+ ....+.++..++++..++|.+|+++|+...+.|.+-
T Consensus 141 ~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~----L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~ 216 (397)
T TIGR00814 141 EKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGAN----LTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEY 216 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----HhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHc
Confidence 6666666666654433323222222222211111 10111 112357789999999999999999999983332110
Q ss_pred CCCC--CccCcchhhhHHHHHHHHHHhHhhHHHhhccCcch-----hh--hhh----CCCCchHHHHHHHHHHHHHHHHh
Q 018064 172 EKPS--KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE-----DN--ILL----SLEKPTWLIVMANFFVVVHVIGS 238 (361)
Q Consensus 172 ~~p~--~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~-----~~--il~----n~~~~~~~~~~~~~~~~i~~~~s 238 (361)
+||+ +++.+|++.++..+..++|+..-.......+.+.- +| .+. ..+ +.+...+..+.-.+++..|
T Consensus 217 ~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tS 295 (397)
T TIGR00814 217 GDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFN-AAWISYAGPIVAIVAISKS 295 (397)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHH
Confidence 3233 44456889999999999888877777776664421 11 122 122 3456667777888899999
Q ss_pred hccccccHHHHHHHHHhhhc----CCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHH
Q 018064 239 YQIYAMPVFDMIETLLVKKL----NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLA 314 (361)
Q Consensus 239 ~pl~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~ 314 (361)
|--.....+|.+++.+.+.. +..+++........+..+.+..+|..-|++=+++.-.|+-.-..+.|++|...-+|
T Consensus 296 FlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~ 375 (397)
T TIGR00814 296 FFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYK 375 (397)
T ss_pred HHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999883221 11223334445556677888899999999888888666666678889999877666
Q ss_pred HhCCCCchhhHHHHHHHHHHHH
Q 018064 315 IYKPRKYSLSWCINWICIVLGL 336 (361)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~~~g~ 336 (361)
.-.-++.+. +..++.+.+.|+
T Consensus 376 v~~l~~~~~-~~~~~fv~~~g~ 396 (397)
T TIGR00814 376 VPALKKYRG-RISNVFVTVIGL 396 (397)
T ss_pred cHHHHHhCC-CcchheeEeeec
Confidence 543332221 134666665554
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=98.84 E-value=3.5e-06 Score=82.00 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=49.1
Q ss_pred hhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHH
Q 018064 140 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 202 (361)
Q Consensus 140 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 202 (361)
+.++..++....|+|.+-.....+-+|+ |||+|. ..|++..+..++.++|.+......
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r~-iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAV----ENPERN-VPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCcccc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888999999999999999999 888764 679999999999999988765544
No 17
>PRK11021 putative transporter; Provisional
Probab=98.84 E-value=7.3e-06 Score=79.09 Aligned_cols=58 Identities=16% Similarity=0.440 Sum_probs=50.9
Q ss_pred cchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhH
Q 018064 138 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 200 (361)
Q Consensus 138 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 200 (361)
.++.++..++....|+|.+-......-+|+ |||+|. .+|++..+..++.++|.+....
T Consensus 174 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k~-iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 174 IEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPERD-FPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred ccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCcccc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999 888764 6799999999999999987654
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.83 E-value=2.6e-06 Score=83.12 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=96.8
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
||....|... ..-+-+++.+||.+| +++.+...+.......+......+......+.. . ++....++...
T Consensus 62 EL~s~~P~aG--G~y~~~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~ 131 (445)
T PRK10644 62 KMSSLDPSPG--GSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----K--DPLVLTITCVV 131 (445)
T ss_pred HHHhhCCCCC--ChhHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----C--CcHHHHHHHHH
Confidence 5555554442 223338889999888 777666555544444444433333333332211 0 11111111122
Q ss_pred HHHHH--hcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccch
Q 018064 83 VHFVL--SHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 160 (361)
Q Consensus 83 ~~lpl--~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~ 160 (361)
+++.+ .-.+..|....+..+.....+..+.+...........+.....++ .........+..++....|+|.+-...
T Consensus 132 ~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T PRK10644 132 VLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 22222 223344555555554444322211111111111111111000110 011123456667788899999999999
Q ss_pred HhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhh
Q 018064 161 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM 204 (361)
Q Consensus 161 ~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 204 (361)
...-+|+ |||+|. ..|++..+..++.++|.+........
T Consensus 211 ~~~aeE~----k~P~r~-iPrai~~s~~i~~v~Y~l~~~~~~~~ 249 (445)
T PRK10644 211 SVAAGVV----KNPKRN-VPIATIGGVLIAAVCYVLSSTAIMGM 249 (445)
T ss_pred HHHHHHh----hCcccc-hhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999 888764 67999999999999999887764433
No 19
>TIGR00909 2A0306 amino acid transporter.
Probab=98.81 E-value=8.7e-07 Score=85.99 Aligned_cols=297 Identities=10% Similarity=0.015 Sum_probs=155.9
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCc------cchhh-
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKE------IKLSY- 75 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~------~~~~~- 75 (361)
|+....++.. ..-+-.++.+||+.| +++.+...+.....+.++....++.+....+... .+-++ ++...
T Consensus 58 el~~~~p~~G--g~y~~~~~~~G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 133 (429)
T TIGR00909 58 ELAAMLPVAG--SPYTYAYEAMGELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVG-LDLPAVLTAKPGNGGVF 133 (429)
T ss_pred HHHhhcCCCC--cceeeHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCchhhhcCCcccccc
Confidence 4444444432 344556778999888 7888877777766777777777777776665311 00000 00111
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHc
Q 018064 76 -FIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAY 154 (361)
Q Consensus 76 -~~~i~~~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf 154 (361)
+..+...+..-....+..|...+++.+.....+..+.++......+...+ +.+ +. .+....++..++....++|
T Consensus 134 ~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~--~~-~~~~~~~~~~~~~~~~~af 208 (429)
T TIGR00909 134 NLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASN--NYT--PF-MPMGFGGVGAATALVFFAF 208 (429)
T ss_pred cHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHH--hcC--CC-CCCcHHHHHHHHHHHHHHH
Confidence 11122222222233445666666666665544433322222222221111 111 11 1234557788899999999
Q ss_pred cCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCc--ch--h---hhhhCCCCchHHHHHH
Q 018064 155 AGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK--VE--D---NILLSLEKPTWLIVMA 227 (361)
Q Consensus 155 ~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~--~~--~---~il~n~~~~~~~~~~~ 227 (361)
.+........+|+ |||+|. .+|++..+..++.++|.+.........+.+ .+ + .+.++.. +++...+.
T Consensus 209 ~G~e~~~~~~~E~----~~p~r~-ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 282 (429)
T TIGR00909 209 IGFEAISTAAEEV----KNPERD-IPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLIL 282 (429)
T ss_pred hhHHHHHhhHHhc----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHH
Confidence 9999999999999 788654 569999999999999998875554332211 00 1 1112222 24444555
Q ss_pred HHHHHHHHHHhhccccccHHHHHHHHHhhh--------cCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhh
Q 018064 228 NFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFA 299 (361)
Q Consensus 228 ~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~ 299 (361)
.+...++.+.+.--......+.+...-+++ .+.+.+.+.+-..-. ...+.+. ....+++.+.++.+ .
T Consensus 283 ~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~--~~i~~~~-~~~~~~~~l~~~~~--~ 357 (429)
T TIGR00909 283 TAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIF--SLTAALL-ASLVPLEGLAELTS--I 357 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHH--HHHHHHH-HHHcCHHHHHHHHH--H
Confidence 666666666665554444444444332111 011112222211111 1111111 22355777766543 3
Q ss_pred hhHHHHHHHHHHHHHHhCCC
Q 018064 300 FAPTTYFLPCIIWLAIYKPR 319 (361)
Q Consensus 300 ~~~~~filP~l~~~~~~~~~ 319 (361)
+..+.|++.++...+++|++
T Consensus 358 ~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 358 GTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34677777777776666543
No 20
>PRK10746 putative transport protein YifK; Provisional
Probab=98.81 E-value=3.7e-06 Score=82.30 Aligned_cols=298 Identities=13% Similarity=0.085 Sum_probs=146.5
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
||....|.+. ++.+-+++.+||++| +++.+...+.....+.+.....+..++.. .+ +.+...+..+...
T Consensus 65 El~~~~P~sG--g~~~y~~~~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~----~p----~~~~~~~~~~~~~ 133 (461)
T PRK10746 65 EMLFLEPVTG--SFAVYAHRYMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFW----FP----EMAQWIPALIAVA 133 (461)
T ss_pred HHHHhcCCCC--CHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cC----CCchHHHHHHHHH
Confidence 4445555443 788889999999998 77777666665555555555444444322 21 1222223222222
Q ss_pred HHHHHhc--CCCCchhHHHHHH-HHHHHHHHHHHHHhhh-hhcccCCCcccccccc-----ccccchhhHHHHHHhHHHH
Q 018064 83 VHFVLSH--LPNFNAIAGVSLA-AAVMSLSYSTIAWSAS-VRKGVQPDVAYGYKAK-----TAAGTVFNFFSALGDVAFA 153 (361)
Q Consensus 83 ~~lpl~~--~~~l~~L~~~s~~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~fa 153 (361)
++.-+.+ .|....++..... -+...+..+++.+... ...+...+ ..+.++. ..+..+.++..++....|+
T Consensus 134 ~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~g~~g~~~~~~~~~fa 212 (461)
T PRK10746 134 LVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQ-SIGFSNLTEHGGFFAGGWKGFLTALCIVVAS 212 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCccccccCCCCcCcccHHHHHHHHHHHHHH
Confidence 2211211 1222233222211 1111111111111111 11111100 0111111 1123466788999999999
Q ss_pred ccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcch----hhh---hhCCCCchHHHHH
Q 018064 154 YAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DNI---LLSLEKPTWLIVM 226 (361)
Q Consensus 154 f~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~----~~i---l~n~~~~~~~~~~ 226 (361)
|.+-..+.....|+ |||+|. .+|++..+.....++|.............+.. ++. ..+... .....+
T Consensus 213 f~G~e~v~~~a~E~----knP~k~-iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i 286 (461)
T PRK10746 213 YQGVELIGITAGEA----KNPQVT-LRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGI 286 (461)
T ss_pred hcCHHHHHHHHHHh----cChhhH-HHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHH
Confidence 99999999999999 888764 77888877777777888754443333332211 111 122221 222334
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHhhh--------cCCCcchhhHHH-HHHHHHHHHHHHHhhcCchhhHHHHhhh
Q 018064 227 ANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFV-VRNLYVASTMFIGITFPFFGGLLGFFGG 297 (361)
Q Consensus 227 ~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~iA~~vp~~~~v~~l~Ga 297 (361)
.+....++.+.+.--.++...+.+...=+++ .+ +++.+.+-+ ................|+-+.+++.+-+
T Consensus 287 ~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~ 365 (461)
T PRK10746 287 INFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYS 365 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4455555555544434444444443332111 01 112222222 2222222233344456766666666554
Q ss_pred hhh--hHHHHHHHHHHHHHHhCCC
Q 018064 298 FAF--APTTYFLPCIIWLAIYKPR 319 (361)
Q Consensus 298 ~~~--~~~~filP~l~~~~~~~~~ 319 (361)
+++ ..+.++++++.|++.+|++
T Consensus 366 ~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 366 ASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333 4789999999999988664
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.80 E-value=2.7e-06 Score=83.52 Aligned_cols=300 Identities=11% Similarity=0.090 Sum_probs=144.0
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHH-H
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIF-A 81 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~-~ 81 (361)
||..+.|... ...-+-+++.+||.+| +++.+...+.......++.....+.+....+... .+.+...+.... .
T Consensus 57 eL~s~~P~~g-GG~y~y~~~~fG~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~ 130 (468)
T TIGR03810 57 NLANKKPELD-GGVYSYAKAGFGPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG----GGNNPPSIIGASVL 130 (468)
T ss_pred HHHhhCCCCC-CChhhhHHhHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcHHHHHHHHHH
Confidence 4444444321 0233348899999888 7777766665554455555554444443332211 011111111111 1
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHh--hhhhcccCCCcc-cc-cc-ccccccchhhHHHHHHhHHHHccC
Q 018064 82 SVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWS--ASVRKGVQPDVA-YG-YK-AKTAAGTVFNFFSALGDVAFAYAG 156 (361)
Q Consensus 82 ~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~--~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~faf~~ 156 (361)
...+-....+..|..+.++.+....-+..+.++++ ....++.....+ .+ .+ ...+...+.++..++....|+|.+
T Consensus 131 ~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G 210 (468)
T TIGR03810 131 LWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIG 210 (468)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHh
Confidence 11222223356666666555544432221111111 111111100000 00 00 011122244566788889999999
Q ss_pred ccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcc----hh----hhhhCCCCchHHHHHHH
Q 018064 157 HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----ED----NILLSLEKPTWLIVMAN 228 (361)
Q Consensus 157 ~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~----~~----~il~n~~~~~~~~~~~~ 228 (361)
-.....+-+|. ||+ ++..|++..+...+.++|.+..+..+...+.+. ++ ...++.. +++...+..
T Consensus 211 ~e~~~~~a~e~----k~~--k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~ 283 (468)
T TIGR03810 211 IEGASMLSARA----EKR--SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLIN 283 (468)
T ss_pred HhHHhhhHhhc----cCc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHH
Confidence 99988888887 553 445699999999999999988876654443211 11 1222222 234445555
Q ss_pred HHHHHHHHHhhccccccHHHHHHHH---------HhhhcCCCcchhhHHHHHHHHHHHHHHHHhhc--CchhhHHHHhhh
Q 018064 229 FFVVVHVIGSYQIYAMPVFDMIETL---------LVKKLNFSPTRLLRFVVRNLYVASTMFIGITF--PFFGGLLGFFGG 297 (361)
Q Consensus 229 ~~~~i~~~~s~pl~~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~v--p~~~~v~~l~Ga 297 (361)
+...++.+.+.--......+..... +.+. + +++.+.+-..-...+.....+.... +.++.+.++.+
T Consensus 284 ~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~-~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~- 360 (468)
T TIGR03810 284 IGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKE-N-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT- 360 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhh-C-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-
Confidence 5556665555544444443333222 1111 1 1222233222221111111111112 23455555433
Q ss_pred hhhhHHHHHHHHHHHHHHhCCC
Q 018064 298 FAFAPTTYFLPCIIWLAIYKPR 319 (361)
Q Consensus 298 ~~~~~~~filP~l~~~~~~~~~ 319 (361)
....+.|+++++.+++.++++
T Consensus 361 -~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 361 -SAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred -HHHHHHHHHHHHHHHHHHHhc
Confidence 345789999999998887554
No 22
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.79 E-value=1.4e-06 Score=84.50 Aligned_cols=288 Identities=12% Similarity=0.105 Sum_probs=153.0
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHH--HHHHHHHhcCCC
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIF--ASVHFVLSHLPN 92 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~--~~~~lpl~~~~~ 92 (361)
..-+-+++.+||++| +++.+...+.....+.++.....+.+...++... .++ +....++. .....-....+.
T Consensus 63 G~y~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~i~~~~~~~~~~l~~~g 136 (426)
T PF13520_consen 63 GIYVWVSRAFGPFWG-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDL----NPS-PWPQFLIAIILILLFTLLNLLG 136 (426)
T ss_dssp THHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG----TCS-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehhhhcccccch-hcccceeEEEeeccccccccchhhhhhhcccccc----ccc-cchheeeeecccccceEeeech
Confidence 666778888999988 7777777777666666666666666655433211 011 11112212 222222333445
Q ss_pred CchhHHHHHHHHHHHH-HHHHHHHhhhhhcccCCCccc-c-ccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCC
Q 018064 93 FNAIAGVSLAAAVMSL-SYSTIAWSASVRKGVQPDVAY-G-YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 169 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 169 (361)
.|..+++........+ ..+.+.....+.....++... + ..+...++.+.....+++..+|+|.+-.....+.+|+
T Consensus 137 ~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~-- 214 (426)
T PF13520_consen 137 IKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN-- 214 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS--
T ss_pred hhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc--
Confidence 6666666555555444 222222222232221111110 0 0011122334457889999999999999999999998
Q ss_pred CCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchh---hh-------hhCCCCchHHHHHHHHHHHHHHHHhh
Q 018064 170 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED---NI-------LLSLEKPTWLIVMANFFVVVHVIGSY 239 (361)
Q Consensus 170 ~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~---~i-------l~n~~~~~~~~~~~~~~~~i~~~~s~ 239 (361)
|| |+.+|++..+..++.++|.+.........+++..+ +. .+... +++...+..++..+..+.+.
T Consensus 215 --k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 288 (426)
T PF13520_consen 215 --KN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSI 288 (426)
T ss_dssp --SS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHH
T ss_pred --cc---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-cccccccccccccccccccc
Confidence 54 34569999999999999999877766665543211 11 11111 23455556666666666666
Q ss_pred ccccccHHHHHHHHHhhhc-----CC--CcchhhHHHHHHHHHHHHHHHHh---hcC--chhhHHHHhhhhhhhHHHHHH
Q 018064 240 QIYAMPVFDMIETLLVKKL-----NF--SPTRLLRFVVRNLYVASTMFIGI---TFP--FFGGLLGFFGGFAFAPTTYFL 307 (361)
Q Consensus 240 pl~~~p~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~iA~---~vp--~~~~v~~l~Ga~~~~~~~fil 307 (361)
........+.+...-+++. .+ +.+.+.+-.. ...+.+.++.. ..| +++.+.+. +.....+.+++
T Consensus 289 ~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~--~~~~i~~i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~ 364 (426)
T PF13520_consen 289 NAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAII--LVAVISSILLLLFLFIPQSSFDILVSL--SSVGYLISYIL 364 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHH--HHHHHHHHHHHHTTTSSSSHHHHHHHH--HHHHTHHHHHH
T ss_pred chhhcchhhcccccccccchhhhhhhccccCCceeeeh--hhhHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 6666666666555544321 01 1111222211 22222222221 234 34445554 23445777777
Q ss_pred HHHHHHHHhCCCC
Q 018064 308 PCIIWLAIYKPRK 320 (361)
Q Consensus 308 P~l~~~~~~~~~~ 320 (361)
+.+.+++.+++++
T Consensus 365 ~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 365 VILAVLFLRRKRP 377 (426)
T ss_dssp HHHHHHHTHHHSC
T ss_pred HHHHHHHHhhhcC
Confidence 8877777765543
No 23
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.74 E-value=4.6e-06 Score=82.02 Aligned_cols=190 Identities=9% Similarity=0.012 Sum_probs=102.6
Q ss_pred cccccCCC-cccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHH
Q 018064 3 EMHEMVPG-KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA 81 (361)
Q Consensus 3 ~~~~~~~~-~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (361)
|+....|. +. ..-+-+++.+||++| +++.+...........++.....+.+..+.+..... ..+....+.++ .
T Consensus 63 El~s~~P~~sG--G~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~--~~~~~~~~~~~-~ 136 (473)
T TIGR00905 63 ILATKKPELDG--GIYAYAREGFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG--NPVPSILGASV-L 136 (473)
T ss_pred HHHhhCCCCCC--ChhhhHHhHcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CcHHHHHHHHH-H
Confidence 44444444 22 344566899999888 777777666555555666555555555554421100 11111111111 1
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhh--hcccCCCcccccccc-ccccchhhHHHHHHhHHHHccCcc
Q 018064 82 SVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASV--RKGVQPDVAYGYKAK-TAAGTVFNFFSALGDVAFAYAGHN 158 (361)
Q Consensus 82 ~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~ 158 (361)
....-..-.+..|....+..+.....+...+++..... .++.....+...+.. .....+..+..++....|+|.+-.
T Consensus 137 ~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e 216 (473)
T TIGR00905 137 LWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIE 216 (473)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHH
Confidence 11222233445666666655555433322222111111 111110001110000 111234567788888999999999
Q ss_pred chHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhh
Q 018064 159 VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM 204 (361)
Q Consensus 159 ~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 204 (361)
......+|+ || +++..|++..+..++.++|.+........
T Consensus 217 ~~~~~a~E~----k~--~r~iPrai~~~~~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 217 GAVVSSGRA----KN--KSDVGKATVLGTLGALVIYILITLLSLGV 256 (473)
T ss_pred HHHHHHHHH----hc--cccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999 67 34567999999999999998887654433
No 24
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.67 E-value=1.7e-05 Score=77.23 Aligned_cols=188 Identities=9% Similarity=0.019 Sum_probs=98.6
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
||....|.+. ..-+-+++ +||++| +.+.+......+....++.+...+.+....+... ++.....+.++ .+
T Consensus 59 EL~s~~P~~G--G~y~y~~~-~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~----~~~~~~~~~~~-i~ 129 (435)
T PRK10435 59 RLATKNPQQG--GPIAYAGE-ISPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN----DPIPAGIACIA-IV 129 (435)
T ss_pred HHHhhCCCCC--ChhHHHHH-HCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC----ChHHHHHHHHH-HH
Confidence 5555555543 33334456 698888 7777655544444444554444455544332210 11111111111 11
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHh
Q 018064 83 VHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 162 (361)
Q Consensus 83 ~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 162 (361)
..+-+...+..|..+.++.+.....+..+............++....+++ ...+....++..++....|+|.+-.....
T Consensus 130 ~~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~ 208 (435)
T PRK10435 130 WVFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWN-TSDTTDGHAIIKSILLCLWAFVGVESAAV 208 (435)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhccccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11122233444555555444443322211111111111111111000110 01123456788899999999999999999
Q ss_pred hhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhc
Q 018064 163 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMF 205 (361)
Q Consensus 163 i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~f 205 (361)
..+|+ |||+|. ..|++..+..++.++|.+.........
T Consensus 209 ~a~E~----knP~r~-iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 209 STGMV----KNPKRT-VPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHh----hCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999 888654 669999999999999998877655444
No 25
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.66 E-value=5.9e-06 Score=80.52 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=97.5
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
|+....|... ..-.-+++.+|+.+| +++.+...+.......++....++.+....+. .....+.++...
T Consensus 62 El~s~~P~~G--g~y~~~~~~~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~--------~~~~~~~~~~~~ 130 (442)
T TIGR00908 62 ELSTMIPTAG--GGYGFARRAFGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPV--------GPGWLAALVFYI 130 (442)
T ss_pred HHHHHcCCCC--CHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CchhHHHHHHHH
Confidence 4445555442 455577889999888 78887777766666667777777766655432 111222221111
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCC--ccccccc--cccccchhhHHHHHHhHHHHccCcc
Q 018064 83 VHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPD--VAYGYKA--KTAAGTVFNFFSALGDVAFAYAGHN 158 (361)
Q Consensus 83 ~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~ 158 (361)
+.. +...+..|..+++........+..+.++.... .....+. ...+..+ ...+..+.++..++....|+|.+..
T Consensus 131 ~~~-~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e 208 (442)
T TIGR00908 131 VFI-GINILGVGEAAKLEFVVTAVAIIALGVFIGAM-VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVE 208 (442)
T ss_pred HHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 111 12223344444444333222222111111111 1111110 0000000 0112234567788888999999999
Q ss_pred chHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhh
Q 018064 159 VVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVAL 199 (361)
Q Consensus 159 ~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~ 199 (361)
.....-+|+ |||+|. ..|++..+..++.++|...-.
T Consensus 209 ~~~~~aeE~----k~P~r~-iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 209 GVAMAAEET----KNPKRD-IPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHh----cCcccc-cCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 888764 568999888888888876643
No 26
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.59 E-value=2.5e-05 Score=76.82 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=42.9
Q ss_pred hHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhcc
Q 018064 149 DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 206 (361)
Q Consensus 149 ~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG 206 (361)
.+.|+|.+-.......+|+ |||+|. ..|++..+..++.++|.+..+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r~-iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDKN-YPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999 888775 6799999999999999876655444433
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.57 E-value=2.9e-05 Score=75.88 Aligned_cols=183 Identities=16% Similarity=0.136 Sum_probs=96.8
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
||....|.+. +..+.+++.+||.+| +++.+...+.....+.+.....++.+....+ +.+...+.++...
T Consensus 67 El~s~~P~~G--g~~~~~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~ 135 (452)
T TIGR01773 67 EMAVANPDTG--SFSTYADDAIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFP--------DIPLWLFSLILTI 135 (452)
T ss_pred HHHHhcCCCC--CHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cCcHHHHHHHHHH
Confidence 5555544443 667788999999888 7877777666666665555555554443321 1222222222211
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHH---HHHHHHHhhhhhcccCCCccccc----c-ccccccchhhHHHHHHhHHHHc
Q 018064 83 VHFVLSHLPNFNAIAGVSLAAAVMSL---SYSTIAWSASVRKGVQPDVAYGY----K-AKTAAGTVFNFFSALGDVAFAY 154 (361)
Q Consensus 83 ~~lpl~~~~~l~~L~~~s~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~faf 154 (361)
+. -..-.+..|....+.......-+ ...++..........+.....+. + +...+..+.++..++....|+|
T Consensus 136 ~~-~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af 214 (452)
T TIGR01773 136 VL-TLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSF 214 (452)
T ss_pred HH-HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHh
Confidence 11 11122233444433333222211 11111111111111111000000 0 0011233456889999999999
Q ss_pred cCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHH
Q 018064 155 AGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 202 (361)
Q Consensus 155 ~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 202 (361)
.+-.......+|+ |||+|. .+|++..+.....++|........
T Consensus 215 ~G~e~~~~~a~E~----k~P~r~-iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 215 MGTEIVTIAAAES----SNPIKS-ITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred ccHHHHhHHHHhh----cChhhH-HHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9999999999999 888764 568887777777888887544433
No 28
>PRK10249 phenylalanine transporter; Provisional
Probab=98.55 E-value=4.6e-05 Score=74.61 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=48.9
Q ss_pred cchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHH
Q 018064 138 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 201 (361)
Q Consensus 138 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~g 201 (361)
..+.++..++....|+|.+-.......+|+ |||+|. ..|++..+.....++|.......
T Consensus 206 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k~-iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 206 TGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEKS-IPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred CcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678899999999999999999999999 888774 67999988888888887654433
No 29
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.55 E-value=2e-05 Score=76.93 Aligned_cols=57 Identities=19% Similarity=0.410 Sum_probs=49.2
Q ss_pred hhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHH
Q 018064 140 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 201 (361)
Q Consensus 140 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~g 201 (361)
+.++..++....|+|.+-.......+|+ |||+|. ..|++..+..++.++|.+.....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r~-iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEI----KNPGKT-MPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCcccc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999 888765 67999999999999998876543
No 30
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.53 E-value=4.1e-05 Score=76.71 Aligned_cols=286 Identities=10% Similarity=0.015 Sum_probs=145.8
Q ss_pred HHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhc----C----CCCccchh-hHHHHHHHHHHHHhcCC
Q 018064 21 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK----E----PCKEIKLS-YFIMIFASVHFVLSHLP 91 (361)
Q Consensus 21 ~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~----~----~~~~~~~~-~~~~i~~~~~lpl~~~~ 91 (361)
++.+|+.+| +++.+...+.....+.+.....++.+..+++...+ . ..+..... .+..+..++++-+...+
T Consensus 100 ~~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence 456888777 78877776665554544444445555555432110 0 00000011 11111111222233446
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccc---cccccccchhhHHHHHHhHHHHccCccchHhhhhcCC
Q 018064 92 NFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 168 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 168 (361)
..|..++++.+.....+..+.++.+.+.......+-.... ++...+..+.++..+.....|+|.+-..+...-+|.
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~- 257 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV- 257 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc-
Confidence 6777777766666544433333333333222111100000 001112235678888999999999999999999999
Q ss_pred CCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCc---chhh---hhhCCCCchHHHHHHHHHHHHHHHHhhccc
Q 018064 169 STPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK---VEDN---ILLSLEKPTWLIVMANFFVVVHVIGSYQIY 242 (361)
Q Consensus 169 ~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~---~~~~---il~n~~~~~~~~~~~~~~~~i~~~~s~pl~ 242 (361)
|||+|. ..|++..++.++.++|.++...-...-+.+ .+++ ..+... .++...+..+........+....
T Consensus 258 ---knP~r~-iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~ 332 (557)
T TIGR00906 258 ---KNPQRA-IPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGG 332 (557)
T ss_pred ---cCcccc-ccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 888774 679999999999999998876544333321 1111 122222 23444445455555555444444
Q ss_pred cccHHHHHHHHHhhh--------cCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHH
Q 018064 243 AMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLA 314 (361)
Q Consensus 243 ~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~ 314 (361)
+....+.+...=+.+ .+.+.+.+.+-. .+..+++.+++.. .+++.+.++.. .+..+.|.+++...+.
T Consensus 333 ~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ai--l~~~iv~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l~ 407 (557)
T TIGR00906 333 MFPLPRVIYAMARDGLLFKWLAQINSKTKTPINAT--VVSGAIAALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVLI 407 (557)
T ss_pred HHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHH--HHHHHHHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 444444433332111 011111222222 1222223333333 35666666542 3457899999888877
Q ss_pred HhCC
Q 018064 315 IYKP 318 (361)
Q Consensus 315 ~~~~ 318 (361)
+|++
T Consensus 408 lR~~ 411 (557)
T TIGR00906 408 LRYQ 411 (557)
T ss_pred hhcc
Confidence 7744
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.53 E-value=2.5e-05 Score=76.74 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=49.8
Q ss_pred hhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhcc
Q 018064 140 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 206 (361)
Q Consensus 140 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG 206 (361)
..++..++....|+|.+-......-+|+ |||+|. ..|++..+..++.++|...........+
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r~-iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGET----ENPAKV-IPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHh----cChhhH-HHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 3457778888999999999999999999 889764 6799998998888889887655444333
No 32
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.51 E-value=6.8e-05 Score=73.86 Aligned_cols=182 Identities=15% Similarity=0.163 Sum_probs=99.3
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
||....|.+ ...|.+-+++.+|+++| +++.+...+.....+.+.....+..+... . + +.....|..+..+
T Consensus 58 El~s~~P~~-gG~~~~~~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~-~---~~~~~~~~~~~~~ 127 (478)
T TIGR00913 58 EMATFYPVV-SGSFATYASRFVDPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYW----T-D---KVNPAVWIAIFYV 127 (478)
T ss_pred HHHHhCCCC-CCCHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-C---CCCHHHHHHHHHH
Confidence 444444422 12678888999999988 78777776666555555555555544322 1 1 1222233322222
Q ss_pred HHHHHhcCCCCchhHHHHHHHHH---HHHHHHHHHHhhhhhcccCCCcccc---c---cccccc---cchhhHHHHHHhH
Q 018064 83 VHFVLSHLPNFNAIAGVSLAAAV---MSLSYSTIAWSASVRKGVQPDVAYG---Y---KAKTAA---GTVFNFFSALGDV 150 (361)
Q Consensus 83 ~~lpl~~~~~l~~L~~~s~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~---~---~~~~~~---~~~~~~~~~~~~~ 150 (361)
+.-+.-.+..|....++..... ..+...++........+...+.... . +...+. ..+.++..++...
T Consensus 128 -~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (478)
T TIGR00913 128 -FIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTA 206 (478)
T ss_pred -HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHH
Confidence 1112233445555444433322 1111111111111111111110000 0 001111 1256788888999
Q ss_pred HHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhH
Q 018064 151 AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 200 (361)
Q Consensus 151 ~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 200 (361)
.|+|.+-......-+|+ |||+|. ..|++..+..++.++|.+....
T Consensus 207 ~~af~G~e~~~~~a~E~----knP~r~-iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 207 AFSFGGTELVALTAGEA----ANPRKS-IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HhhhccHHHHHHHHHhh----cChhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 888764 6799999999999999986543
No 33
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.51 E-value=3.9e-05 Score=74.88 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=97.7
Q ss_pred cchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcc-h----h-
Q 018064 138 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-E----D- 211 (361)
Q Consensus 138 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~-~----~- 211 (361)
+.+.++..++....|+|.+-.......+|+ |||+|. ..|++..+.....++|......-...-..+. + +
T Consensus 178 ~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r~-iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~ 252 (446)
T PRK10197 178 NGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEKH-IVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGS 252 (446)
T ss_pred ccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhhh-HHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCc
Confidence 345688899999999999999999999999 888764 6788888888888888876555332222111 1 1
Q ss_pred --hhhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh--------cCCCcchhhHHHHHH-HHHHHHHH
Q 018064 212 --NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVVRN-LYVASTMF 280 (361)
Q Consensus 212 --~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~ 280 (361)
...++... .+...+......++.+.+.--......+.+...=+++ .+ +++.+.+-+.-. .......+
T Consensus 253 ~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l 330 (446)
T PRK10197 253 YRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVV 330 (446)
T ss_pred HHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHH
Confidence 12333332 3344455555555555555444444444443332111 01 112222222222 11122222
Q ss_pred HHhhcC--chhhHHHHhhhhhhhHHHHHHHHHHHHHHhCC
Q 018064 281 IGITFP--FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 318 (361)
Q Consensus 281 iA~~vp--~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~ 318 (361)
.....| .++.++++.+... .+.|.++++.+++.+|+
T Consensus 331 ~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 331 VNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred HHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 222223 3666777665444 58888999888888763
No 34
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.47 E-value=8.1e-05 Score=73.14 Aligned_cols=289 Identities=12% Similarity=0.086 Sum_probs=134.9
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 92 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~ 92 (361)
..++.+.+++.+|+.+| +++.+.......-...+.....+..+... .+ +.....+.++...+.. +.-.+.
T Consensus 83 ~~~~~~ya~~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~----~p----~~~~~~~~~~~~~~~~-~iN~~g 152 (469)
T PRK11049 83 YKSFSDFASDLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFW----FP----DLSDWVASLAVVLLLL-SLNLAT 152 (469)
T ss_pred CCcHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----CCcHHHHHHHHHHHHH-HHHHHh
Confidence 33677899999999888 88887777665444444444444333322 11 1222222222111111 122233
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhh---hhccc-CC-Cccccc----cc-cccccchhhHHHHHHhHHHHccCccchHh
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSAS---VRKGV-QP-DVAYGY----KA-KTAAGTVFNFFSALGDVAFAYAGHNVVLE 162 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~---~~~~~-~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 162 (361)
.|....+..+....-+..+.++++.+ ...+. .+ +...+. ++ ...+..+.++..++....|+|.+-.....
T Consensus 153 ~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~ 232 (469)
T PRK11049 153 VKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGT 232 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHH
Confidence 44444444333322211111111111 11110 01 100011 11 11123355688999999999999999999
Q ss_pred hhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCc-c---hhhh---hhCCCCchHHHHHHHHHHHHHH
Q 018064 163 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---EDNI---LLSLEKPTWLIVMANFFVVVHV 235 (361)
Q Consensus 163 i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~-~---~~~i---l~n~~~~~~~~~~~~~~~~i~~ 235 (361)
.-+|+ |||+|. ..|++..+.....++|.+........-+.+ . +++. .+... ..+...+..++..++.
T Consensus 233 ~a~E~----knP~r~-iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~ 306 (469)
T PRK11049 233 TAAET----KDPEKS-LPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVG-LPAAASVINFVVLTSA 306 (469)
T ss_pred HHHHh----cCHhhH-HHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcC-ChhHHHHHHHHHHHHH
Confidence 99999 888764 568887666666777776655443222211 1 0111 11111 1233334444444444
Q ss_pred HHhhccccccHHHHHHHHHhh--------hcCCCcchhhHHHHHHHHH-HHHHHHHhhcCchhhHHHHhhh--hhhhHHH
Q 018064 236 IGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFVVRNLYV-ASTMFIGITFPFFGGLLGFFGG--FAFAPTT 304 (361)
Q Consensus 236 ~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~iA~~vp~~~~v~~l~Ga--~~~~~~~ 304 (361)
+.+.--......+.+...-++ +.+ +++.+.+-.+-...+ .+...+....|+..+.++.+-+ .....+.
T Consensus 307 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 385 (469)
T PRK11049 307 ASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFV 385 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 433322222333332222111 101 112223222222211 1222333445665555554333 3334678
Q ss_pred HHHHHHHHHHHhCC
Q 018064 305 YFLPCIIWLAIYKP 318 (361)
Q Consensus 305 filP~l~~~~~~~~ 318 (361)
|+++.+.+++.+|+
T Consensus 386 y~~~~~a~~~lr~~ 399 (469)
T PRK11049 386 WTIILCSYLVYRKQ 399 (469)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999888888765
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.46 E-value=4.9e-05 Score=74.42 Aligned_cols=295 Identities=13% Similarity=0.130 Sum_probs=139.7
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
|+....|... ++.+-+++.+||..| +++.+...+.....+.+.....++.++...+ +.+...+..+...
T Consensus 67 El~s~~P~aG--g~y~~~~~~~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~~~~~~~i~~~ 135 (456)
T PRK10238 67 EMVVEEPVAG--SFSHFAYKYWGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYP--------EIPTWVSAAVFFV 135 (456)
T ss_pred HHHHhcCCCC--CHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cCcHHHHHHHHHH
Confidence 4555555543 566667889999887 8888887777777676666665655543321 1222222222222
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHH---HHH-HHhhhhhcccCCCccc-c-cccc-ccccchhhHHHHHHhHHHHcc
Q 018064 83 VHFVLSHLPNFNAIAGVSLAAAVMSLSY---STI-AWSASVRKGVQPDVAY-G-YKAK-TAAGTVFNFFSALGDVAFAYA 155 (361)
Q Consensus 83 ~~lpl~~~~~l~~L~~~s~~~~~~~~~~---~~i-~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~faf~ 155 (361)
+..-+ -....|.+..++......-+.. +++ .+.........++... + .++. ..+..+.++..+++...|+|.
T Consensus 136 ~~~~l-N~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~ 214 (456)
T PRK10238 136 VINAI-NLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFG 214 (456)
T ss_pred HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhc
Confidence 21111 1123344444443332222111 111 1111111101111110 1 0111 112334567778888999999
Q ss_pred CccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHH--hhccCc--chhhh---hhCCCCchHHHHHHH
Q 018064 156 GHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY--WMFGNK--VEDNI---LLSLEKPTWLIVMAN 228 (361)
Q Consensus 156 ~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy--~~fG~~--~~~~i---l~n~~~~~~~~~~~~ 228 (361)
+-.......+|+ |||+|. .+|++..+.....+.|...-.... ..+.+- ..++. +++... .+...+..
T Consensus 215 G~e~~~~~aeE~----knP~r~-iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~ 288 (456)
T PRK10238 215 GLELVGITAAEA----DNPEQS-IPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALN 288 (456)
T ss_pred CHHHHHHHHHhh----cChhhH-HHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHH
Confidence 999999999999 888764 668887667666666654322211 111111 11111 222222 23334445
Q ss_pred HHHHHHHHHhhccccccHHHHHHHHHhh--------hcCCCcchhhHHHHHHHHHH-HHHHHHhhcCc--hhhHHHHhhh
Q 018064 229 FFVVVHVIGSYQIYAMPVFDMIETLLVK--------KLNFSPTRLLRFVVRNLYVA-STMFIGITFPF--FGGLLGFFGG 297 (361)
Q Consensus 229 ~~~~i~~~~s~pl~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~iA~~vp~--~~~v~~l~Ga 297 (361)
....+..+.+..-......+.+...=+. +.+ +++.+.+-+.-...+. +..+.....|+ ++.+.++.
T Consensus 289 ~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~-- 365 (456)
T PRK10238 289 IVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALV-- 365 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--
Confidence 5555554444433344444433322111 101 1122233222222221 11121112232 34444442
Q ss_pred hhhhHHHHHHHHHHHHHHhCC
Q 018064 298 FAFAPTTYFLPCIIWLAIYKP 318 (361)
Q Consensus 298 ~~~~~~~filP~l~~~~~~~~ 318 (361)
..+..+.|.+|.+.+++.+|+
T Consensus 366 ~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 366 VSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345578999999999998865
No 36
>PRK15049 L-asparagine permease; Provisional
Probab=98.43 E-value=0.00015 Score=71.74 Aligned_cols=170 Identities=11% Similarity=0.122 Sum_probs=92.8
Q ss_pred hhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCc-c---hhhh--
Q 018064 140 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---EDNI-- 213 (361)
Q Consensus 140 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~-~---~~~i-- 213 (361)
+..+..++...+|+|.+-..+...-+|+ |||+|. ..|++..++....++|...........+.+ . .++.
T Consensus 219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~r~-iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~ 293 (499)
T PRK15049 219 LLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQTM-VPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVT 293 (499)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChhhH-HHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHH
Confidence 3445566778999999999999999999 889774 678888888888888887655444333321 1 1111
Q ss_pred -hhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh--------cCCCcchhhHHHH-HHHHHHHHHHHHh
Q 018064 214 -LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK--------LNFSPTRLLRFVV-RNLYVASTMFIGI 283 (361)
Q Consensus 214 -l~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~iA~ 283 (361)
.+.... .+...+..+...+..+.+.--......+.+...=+++ .+ +++.+.+-+. ..++..+..++..
T Consensus 294 ~~~~~g~-~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~ 371 (499)
T PRK15049 294 FFSKLGV-PYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNY 371 (499)
T ss_pred HHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 122221 2333455555555555554444444444433322111 01 1122232222 2222222222222
Q ss_pred hcCc--hhhHHHHhhhhhhhHHHHHHHHHHHHHHhCC
Q 018064 284 TFPF--FGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 318 (361)
Q Consensus 284 ~vp~--~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~ 318 (361)
..|+ ++.++++. ..+..+.|++|.+.+++.||+
T Consensus 372 ~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 372 LVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred cChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 2332 34444443 455688999999999988754
No 37
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.40 E-value=0.00016 Score=71.63 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhh
Q 018064 144 FSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVAL 199 (361)
Q Consensus 144 ~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~ 199 (361)
...+..+.|+|.+-.......+|+ |||+|. ..|++..+..++.++|.+..+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~----knP~r~-~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINEL----ENPGRD-YPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHc----cCCccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 345555689999999999999999 888764 679999988888888876443
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.39 E-value=2e-05 Score=74.58 Aligned_cols=274 Identities=12% Similarity=0.132 Sum_probs=142.6
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCCc
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFN 94 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l~ 94 (361)
+..|..++++||..| .+..+....+.+..+.......+|.++... . + +.+... ..+..++..-....+.++
T Consensus 65 ~~~~~~~~~~Gk~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~---~tp~~~-~~l~~l~~~~~~~~~Gi~ 135 (359)
T TIGR00912 65 NFSEILSKYLGKILG-RLLSILFILYFFLIAAYLIRIFADFIKTYL---L-P---RTPIIV-IIILIIIVSIYIVRKGIE 135 (359)
T ss_pred CHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-C---CCCHHH-HHHHHHHHHHHHHHccHH
Confidence 789999999999777 566665555555444444444444443221 1 1 112111 112222222223345677
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHhhhhhcccCCCccccccccccccchhhHHHHH-HhHHHHccCccchHhhhhcCCCCCC
Q 018064 95 AIAGVSLAAAVMSLSY-STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSAL-GDVAFAYAGHNVVLEIQATIPSTPE 172 (361)
Q Consensus 95 ~L~~~s~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~~~~ 172 (361)
....++.+-....+.. ..++......+ .+.+ +.. ...+.++.+...+. ....++|.+...+.-...++ +
T Consensus 136 ~i~r~~~i~~~~~i~~~~~il~~~~~~~---~~~~-~l~-P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~ 206 (359)
T TIGR00912 136 VLLRTAEILLIIFLILFILVLILLAPKL---GNIK-NLL-PVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----S 206 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---ccHH-Hcc-CccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----C
Confidence 7777666665543332 12222111111 1111 110 11123344444444 36788898888888888887 6
Q ss_pred CCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchh-------hhhhCCCCchH---HHHHHHHHHHHHHHHhhccc
Q 018064 173 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED-------NILLSLEKPTW---LIVMANFFVVVHVIGSYQIY 242 (361)
Q Consensus 173 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~-------~il~n~~~~~~---~~~~~~~~~~i~~~~s~pl~ 242 (361)
||++. +|+...+..++.++|...-......+|.+..+ +..+..+-++. .-.+.-..-......+.-+.
T Consensus 207 ~~~~~--~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~ 284 (359)
T TIGR00912 207 KKKKI--KKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFY 284 (359)
T ss_pred Chhhh--HHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 49999999999999999888888888854322 11122221111 11122233345555666667
Q ss_pred cccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhh---hhhhhHHHHHHHHHHHHHHhCC
Q 018064 243 AMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPF-FGGLLGFFG---GFAFAPTTYFLPCIIWLAIYKP 318 (361)
Q Consensus 243 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~G---a~~~~~~~filP~l~~~~~~~~ 318 (361)
.+.....+++.++.+++ +....-... ....++ ..|| .+. ..... ...+....+++|.++.+...-|
T Consensus 285 ~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 285 LYIAVKGLSKLFKKRKY------SILILPVLM--VIFSIS-FFPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred HHHHHHHHHHHhCCCCc------chhHHHHHH--HHHHHH-HccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778877765522 112222221 222222 3455 332 22222 2344567788999877666533
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.39 E-value=0.00015 Score=71.00 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=46.4
Q ss_pred cchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHH
Q 018064 138 GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 201 (361)
Q Consensus 138 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~g 201 (361)
..+.++..++....|+|.+-.......+|+ |||+|. .+|++..+.....++|.......
T Consensus 196 ~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~k~-iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 196 NGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPEKS-IPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred cchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 335577888999999999999999999999 888774 56887777777777787664443
No 40
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.35 E-value=7.3e-05 Score=70.80 Aligned_cols=288 Identities=13% Similarity=0.135 Sum_probs=159.0
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHH--HHHhcC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHL 90 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~--lpl~~~ 90 (361)
..|+.+.+++.+|+++| ++..+.=...-.-++++-...++..++..+++ .++..+.++...++ +=+.-.
T Consensus 76 ~gSF~~~a~~~lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~--------vP~Wv~al~~~~l~~~~NL~sV 146 (462)
T COG1113 76 SGSFSDYARKYLGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD--------VPQWVFALAAVVLLLAVNLISV 146 (462)
T ss_pred CCcHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999888 88888888888888888888888888766543 23334444433333 334556
Q ss_pred CCCchhHHHHHHHHHHHH-HHHHHHHhhhhhcccCCCc-cccccc-----cccccchhhHHHHHHhHHHHccCccchHhh
Q 018064 91 PNFNAIAGVSLAAAVMSL-SYSTIAWSASVRKGVQPDV-AYGYKA-----KTAAGTVFNFFSALGDVAFAYAGHNVVLEI 163 (361)
Q Consensus 91 ~~l~~L~~~s~~~~~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 163 (361)
|...++.+.=.+--+..+ .++++..+ .+..+...+. ..+.+. --.++.+.++..++-+.+|||++...+=--
T Consensus 147 k~FGE~EfWfAlIKV~aIi~~Iv~G~~-ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGit 225 (462)
T COG1113 147 KVFGELEFWFALIKVAAIIAFIVVGIV-LLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGIT 225 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666653332222222 22211111 1111211111 111111 113556788999999999999999999888
Q ss_pred hhcCCCCCCCCCCccCcchhhhHHHHHHHHH-----HhHhhHHHhhccCcchh--hhhhCCCCchHHHHHHHHHHHHHHH
Q 018064 164 QATIPSTPEKPSKGPMWRGVVVAYIVVALCY-----FPVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVI 236 (361)
Q Consensus 164 ~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y-----~~~g~~gy~~fG~~~~~--~il~n~~~~~~~~~~~~~~~~i~~~ 236 (361)
..|- |||+|. .+|++.--..=..++| .++.+.-+-.++++.++ .+++...- .+...+.+..+..+.+
T Consensus 226 A~Et----~dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi-~~Aa~i~N~VVLtAa~ 299 (462)
T COG1113 226 AAEA----KDPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI-PFAAGIMNFVVLTAAL 299 (462)
T ss_pred HHhh----cChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC-cccccceeEEEeechh
Confidence 8888 788765 5566553332223333 34444455444443222 12222221 1222333333333334
Q ss_pred HhhccccccHHHHHHHHHhhhcC------CCcc--hhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhh--HHHHH
Q 018064 237 GSYQIYAMPVFDMIETLLVKKLN------FSPT--RLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFA--PTTYF 306 (361)
Q Consensus 237 ~s~pl~~~p~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~--~~~fi 306 (361)
.+.-=-.+...+++...-.+++- .+++ ...-.........++.++.+..| +.++.++-+.++. ...+.
T Consensus 300 S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~ 377 (462)
T COG1113 300 SALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWL 377 (462)
T ss_pred hcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHH
Confidence 44333445555665555332210 0111 12334555566677778888889 6666666544433 44455
Q ss_pred HHHHHHHHHhCC
Q 018064 307 LPCIIWLAIYKP 318 (361)
Q Consensus 307 lP~l~~~~~~~~ 318 (361)
+=.+.|++.+|.
T Consensus 378 ~I~~s~l~~rk~ 389 (462)
T COG1113 378 MILLSQLKLRKA 389 (462)
T ss_pred HHHHHHHHHHhc
Confidence 556778888873
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.32 E-value=0.00033 Score=74.08 Aligned_cols=175 Identities=13% Similarity=0.178 Sum_probs=98.0
Q ss_pred HHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcC-CCCcc-chhhHHHHHHHHHHHHhcCCCCchh
Q 018064 19 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE-PCKEI-KLSYFIMIFASVHFVLSHLPNFNAI 96 (361)
Q Consensus 19 l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~lpl~~~~~l~~L 96 (361)
..++++|+.+| ..+.++....+..++..|.+..++.+..++...... ..... +.+.+..+..+++.-+. ....|..
T Consensus 148 yisralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ 225 (953)
T TIGR00930 148 LISRSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWE 225 (953)
T ss_pred HHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHH
Confidence 44667888788 788888888778888888888888888776532100 00011 12233332222222232 2234444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc-CC--C-cccc---cccc--cccc-chhhHHHHHHhHHHHccCccchHhhhhc
Q 018064 97 AGVSLAAAVMSLSYSTIAWSASVRKGV-QP--D-VAYG---YKAK--TAAG-TVFNFFSALGDVAFAYAGHNVVLEIQAT 166 (361)
Q Consensus 97 ~~~s~~~~~~~~~~~~i~~~~~~~~~~-~~--~-~~~~---~~~~--~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~ 166 (361)
+.+..+..+..++.++.+++.++.... .+ + ..++ ..+. +... ...++...++++.+||.+-.....+-.|
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443333333222222222221111110 00 0 0000 0000 0111 1223778889999999999999999999
Q ss_pred CCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhH
Q 018064 167 IPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 200 (361)
Q Consensus 167 m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 200 (361)
+ |||++. ..+++..++.+++++|+++.+.
T Consensus 306 l----KnP~r~-IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 306 L----KDPQKA-IPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred c----cChhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 9 889764 7799999999999999998753
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.29 E-value=0.00021 Score=70.80 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=50.8
Q ss_pred chhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHh
Q 018064 139 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW 203 (361)
Q Consensus 139 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~ 203 (361)
+..++..++....|+|.+-.....+.+|+ |||+|. .+|++..+..++.++|.+....-..
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r~-iPrAi~~s~~~v~~~Y~l~~~a~~~ 292 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYRT-LPIAIIISMPIVTFIYVLTNIAYFT 292 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchhh-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888999999999999999999999 888764 6799999999999999998655443
No 43
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.29 E-value=0.00061 Score=67.20 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=39.5
Q ss_pred hHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHh
Q 018064 142 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA 198 (361)
Q Consensus 142 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g 198 (361)
.+..++....|+|.+-......-+|+ |||+|. ..|++..+..+..+++.+..
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r~-iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEVV-GPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhc----CChhhh-cCHHHHHHHHHHHHHHHHHH
Confidence 45555666779999999999999999 888764 67988888877665544333
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.28 E-value=0.00041 Score=67.85 Aligned_cols=289 Identities=13% Similarity=0.180 Sum_probs=151.0
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH--HHHHHhcCCC
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS--VHFVLSHLPN 92 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~--~~lpl~~~~~ 92 (361)
.+-+-+++.+|+++| +++.+...+.......+.....++.+....+..... ......+..+..+ ..+-+.-.+.
T Consensus 77 G~y~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ln~~G 152 (466)
T COG0531 77 GAYAYAKRALGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL---SIGPLLIILIALALIALLTLLNLRG 152 (466)
T ss_pred CeeeehhhhcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh---cCCchHHHHHHHHHHHHHHHHHHhh
Confidence 566677889998787 777877777777777777777777555554421000 0010112222222 2222233445
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCC-ccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCC
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPD-VAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTP 171 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 171 (361)
.|...++........+...+++............ ..... ..........+..+++...++|.+-....+..+|+
T Consensus 153 ~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~---- 227 (466)
T COG0531 153 IKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAP-FNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV---- 227 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCC-cccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----
Confidence 5666665555555444333333222222221111 11110 00022334468888999999999999999999999
Q ss_pred CCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCc-chhhhhhCCC--------CchHHHHHHHHHHHHHHHHhhccc
Q 018064 172 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-VEDNILLSLE--------KPTWLIVMANFFVVVHVIGSYQIY 242 (361)
Q Consensus 172 ~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~-~~~~il~n~~--------~~~~~~~~~~~~~~i~~~~s~pl~ 242 (361)
|||+|. ..|++..+...+.++|...........+++ .... ..+.| .+++...+..+...+....+..-.
T Consensus 228 knp~r~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 305 (466)
T COG0531 228 KNPKRT-IPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAW 305 (466)
T ss_pred cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 787665 569999999999999998887777766642 1111 11111 113444455555555555554333
Q ss_pred cccHHHHHHHHHhhh--------cCCCcchhhHHHHHHHHHHHHHHHHhhcC----chhhHHHHhhhhhhhHHHHHHHHH
Q 018064 243 AMPVFDMIETLLVKK--------LNFSPTRLLRFVVRNLYVASTMFIGITFP----FFGGLLGFFGGFAFAPTTYFLPCI 310 (361)
Q Consensus 243 ~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iA~~vp----~~~~v~~l~Ga~~~~~~~filP~l 310 (361)
.....+.+...=+.+ .+.+.+.+.+-..-...+.. .+....+ .++.+.++ +.....+.|.++.+
T Consensus 306 ~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~ 381 (466)
T COG0531 306 ILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--ILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVAL 381 (466)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHH
Confidence 222222222211110 01111122222222222222 1222222 23444444 34456789999999
Q ss_pred HHHHHhCC
Q 018064 311 IWLAIYKP 318 (361)
Q Consensus 311 ~~~~~~~~ 318 (361)
..++.+++
T Consensus 382 ~~~~~~~~ 389 (466)
T COG0531 382 ALLVLRRK 389 (466)
T ss_pred HHHHHhhc
Confidence 98888866
No 45
>PRK10836 lysine transporter; Provisional
Probab=98.18 E-value=0.00075 Score=66.73 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=47.7
Q ss_pred hhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhc
Q 018064 140 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMF 205 (361)
Q Consensus 140 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~f 205 (361)
+..+........|+|.+-..+...-+|+ |||+|. ..|++..++..+.++|......-....
T Consensus 204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r~-iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 204 FAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAKN-IPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 3445555666779999999999999999 889764 679999999999999998765544433
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.17 E-value=0.0031 Score=62.16 Aligned_cols=195 Identities=12% Similarity=0.041 Sum_probs=94.7
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhh--cCCCCcc----c-hhh
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC--KEPCKEI----K-LSY 75 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~--~~~~~~~----~-~~~ 75 (361)
||....|... ..-.-+++++||.+| +++.+...+.......+........+..+..... ..+ +++ . ...
T Consensus 69 EL~s~~P~aG--G~Y~~~~~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 144 (475)
T TIGR03428 69 ELAARYPISG--AIYQWSRRMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGED-PTLTSPSGAANA 144 (475)
T ss_pred HHHhhCCCCC--CHHHHHHHHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC-ccccCCCchHHH
Confidence 4555555442 444456788899888 7887776665544443333333333333221110 000 011 0 011
Q ss_pred HHHHH-HHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccC-CCccccccccccccc-hhhHHHHHHhHHH
Q 018064 76 FIMIF-ASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ-PDVAYGYKAKTAAGT-VFNFFSALGDVAF 152 (361)
Q Consensus 76 ~~~i~-~~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~f 152 (361)
+.+.. ...+.-+.-.+..|..+.+..+.....+..+.+++......... +....+.....+... ...+..+.....|
T Consensus 145 ~~~~~~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 224 (475)
T TIGR03428 145 VLLGSVLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAY 224 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHH
Confidence 11111 11122222234455566655554443332222222222221111 111011000001111 2345556667789
Q ss_pred HccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhcc
Q 018064 153 AYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 206 (361)
Q Consensus 153 af~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG 206 (361)
+|.+-.....+-+|+ |||+|. ..|++..+..+..++|.+.-+......+
T Consensus 225 ~f~G~e~~~~~aeE~----knP~r~-iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 225 VMVGFGSAGELSEET----KNPRRV-APRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HhcCcchHHHHHHHh----cCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999 889775 6799998888877666555444443333
No 47
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.16 E-value=0.00037 Score=66.97 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhC
Q 018064 137 AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS 216 (361)
Q Consensus 137 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n 216 (361)
..+..++..++-.-.|+|.+=..+=.+..|+ |||+|. +++++.+++.+++++|+++=+..+..- +.+.++.+
T Consensus 200 ~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP~kt-LP~Ai~isi~lvt~iYil~NvAy~~vl---s~~e~l~S 271 (479)
T KOG1287|consen 200 DTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNPRRT-LPRAILISIPLVTVIYVLVNVAYFTVL---SPDEILSS 271 (479)
T ss_pred cCchHHHHHHHHHhhhcccCchhhccchHhh----cCcccc-chHHHHHhhHHHHHHHHHhHhheeEec---CHHHhccc
Confidence 3455678899999999999999999999999 889765 889999999999999998866554332 33333322
Q ss_pred CC---------CchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhc-CC--CcchhhHHH--HHHHHHHHHHHHH
Q 018064 217 LE---------KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL-NF--SPTRLLRFV--VRNLYVASTMFIG 282 (361)
Q Consensus 217 ~~---------~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-~~--~~~~~~~~~--~~~~~~~~~~~iA 282 (361)
-. -+++. ....++..++.+.+.--.++...+.+...-++.. +. .....++.. ..++......++.
T Consensus 272 ~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~ 350 (479)
T KOG1287|consen 272 DAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVL 350 (479)
T ss_pred chHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHH
Confidence 10 12233 3444555555555554444444444433322211 00 000011111 1222233444455
Q ss_pred hhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHhCCCCchh
Q 018064 283 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSL 323 (361)
Q Consensus 283 ~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~~~~~ 323 (361)
..++|+..+++..+=.-.....+.+=+++++|.++++..++
T Consensus 351 ~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 351 SLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 55678999999988777777788888899999888775544
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.14 E-value=0.0025 Score=63.12 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=46.0
Q ss_pred hHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHH
Q 018064 142 NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG 201 (361)
Q Consensus 142 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~g 201 (361)
++..++....|+|.+-.......+|+ |||+|. ..|++..+...+.++|.+.....
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~----~~p~~~-~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKT----ENPEKN-FPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc----cCCCcc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788899999999999999999 788764 67999999999999998764433
No 49
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.98 E-value=0.0016 Score=63.55 Aligned_cols=281 Identities=14% Similarity=0.053 Sum_probs=145.8
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCC---CCc--cchhhHHHHHHHHHHHHh
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP---CKE--IKLSYFIMIFASVHFVLS 88 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~---~~~--~~~~~~~~i~~~~~lpl~ 88 (361)
.++.-++|..||.+ |-.+..++..+...|-........++.+..+++...+.. ..+ .......+++..+.+++.
T Consensus 76 l~~~v~sR~~FG~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCcchhhhhhhhhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 37888999999986 557889999999999999999999999988887754311 000 012233345555666766
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHH-ccCccchHhhhhcC
Q 018064 89 HLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFA-YAGHNVVLEIQATI 167 (361)
Q Consensus 89 ~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m 167 (361)
...-.|..++....+....+....+........+...+.....+..........+..+++..+-. -..-.+.++..+.+
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~ 234 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG 234 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc
Confidence 66555555555555554433322222221122111111100111111223345566666553322 24446788888888
Q ss_pred CCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhh----ccCcchh--hhhhCCCCchHHHH-----HHHHHHHHHHH
Q 018064 168 PSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM----FGNKVED--NILLSLEKPTWLIV-----MANFFVVVHVI 236 (361)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~----fG~~~~~--~il~n~~~~~~~~~-----~~~~~~~i~~~ 236 (361)
|+|++.. +....++.........+|..+... +|+...+ .....+..+..... ..+++..+..+
T Consensus 235 ----~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~ 308 (442)
T TIGR00800 235 ----KSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQL 308 (442)
T ss_pred ----CCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHH
Confidence 4444443 456667777777777777777765 7754332 33333332111100 11122222222
Q ss_pred -HhhccccccHHHHHHHHHhhhcCCCcchhhHH-HHHHHHHHHHH--HHHhhcCchhhHHHHhhhhhhhHHHHH
Q 018064 237 -GSYQIYAMPVFDMIETLLVKKLNFSPTRLLRF-VVRNLYVASTM--FIGITFPFFGGLLGFFGGFAFAPTTYF 306 (361)
Q Consensus 237 -~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~iA~~vp~~~~v~~l~Ga~~~~~~~fi 306 (361)
...-.+.++....+...+.+..+ .+|. .+..++...+. ...-+.+.+.+++++.|...+......
T Consensus 309 ~t~~~~N~ys~~l~l~~l~~~~~~-----~~r~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~ 377 (442)
T TIGR00800 309 STNISANSYSAGLDIAALLPKYIK-----IKRGSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVM 377 (442)
T ss_pred HHHHHhhccchHHHHHHhCcCccc-----cchHHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666776666666644322 1221 11111111111 111122345667777777666555444
No 50
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.87 E-value=0.012 Score=56.18 Aligned_cols=262 Identities=14% Similarity=0.058 Sum_probs=135.6
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 93 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l 93 (361)
.++.-++|..||++ |..+..+...+...|--.......++.++.+.+...+. .+...+..+..++..+.+.. ..
T Consensus 58 l~~~v~sR~~FG~~-Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~~-G~ 131 (386)
T TIGR02358 58 LSAMGSLKLSLGSK-GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE----ESPMLWILIVGILVTLWLLS-GP 131 (386)
T ss_pred cCHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHHHHHHH-HH
Confidence 47999999999985 55888888889999999999999999999988764321 12233444444445555543 34
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHH-ccCccchHhhhhcCCCCCC
Q 018064 94 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFA-YAGHNVVLEIQATIPSTPE 172 (361)
Q Consensus 94 ~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~~~~ 172 (361)
|.++++..++............+....+...++ ..+. +.+ ..+..+.+...-. -......++..+.. |
T Consensus 132 ~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-----~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k 200 (386)
T TIGR02358 132 LAFVWLNNWSVWLLLIATLWLLVVVFSKADLSE-LWNR-----AGD-MSFAVAVELVIAMPLSWLPLIADYTRFA----R 200 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh-hcCC-----CCC-ccHHHHHHHHHHHHHHHHHHccchhhhc----C
Confidence 566666666655443322222222222211111 1111 111 2222232222111 12223366666665 4
Q ss_pred CCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q 018064 173 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET 252 (361)
Q Consensus 173 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 252 (361)
+|++-- +....+..+...+...+|.......++....+++.... ....+-+...++...+-..+.++....+..
T Consensus 201 ~~~~~~--~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 201 NPRHVF--LGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred CCccee--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 443322 45556777777778888877776666532223332221 112333444555555556666666666666
Q ss_pred HHhhhcCCCcchhhHHHHHHHHHHHHHHHHhh--cCchhhHHHHhhhhhhhHHHHH
Q 018064 253 LLVKKLNFSPTRLLRFVVRNLYVASTMFIGIT--FPFFGGLLGFFGGFAFAPTTYF 306 (361)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~--vp~~~~v~~l~Ga~~~~~~~fi 306 (361)
..++- + +.++..+ ..+...+++.. ...+++++++.|...++.....
T Consensus 275 l~~~~-~----~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~ 322 (386)
T TIGR02358 275 LLPRL-K----VKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVV 322 (386)
T ss_pred HHHhh-c----chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66332 1 1122111 11112222222 3456777777776665444433
No 51
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.75 E-value=0.013 Score=56.21 Aligned_cols=262 Identities=14% Similarity=0.125 Sum_probs=144.8
Q ss_pred HHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCCchh
Q 018064 17 HELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAI 96 (361)
Q Consensus 17 ~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l~~L 96 (361)
-.++|..||.+ |.++..+...+.+.|-.....+..++..... +..+...+.++..+++...+.. -.|.+
T Consensus 84 mi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~---------~~~~~~~~ili~g~l~~l~~if-G~r~l 152 (442)
T COG1457 84 MILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIGSG---------TGLPVWAGILIIGVLMTLVTIF-GYRAL 152 (442)
T ss_pred heeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhccccccC---------CCCcHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 35688899985 5599999999999999999999998872211 1234455555555555555543 13444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHc-cCccchHhhhhcCCCCCCCCC
Q 018064 97 AGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAY-AGHNVVLEIQATIPSTPEKPS 175 (361)
Q Consensus 97 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~~p~ 175 (361)
+.++..+................... ...+.. ....+.++.++..+++...-.+ ..-+...++.+-+ ++|+
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~--~~~~~~--~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~~t 224 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSK--GGLDAL--WVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PSPT 224 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--ccccee--eccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CCCc
Confidence 44444444433322222222222211 111111 1222455566666665543322 4445667777777 3343
Q ss_pred CccCcchhhhHHHHHHHHHHhHhhHHHhhccCcc-hhhhhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Q 018064 176 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-EDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 254 (361)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~-~~~il~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 254 (361)
.++.-.....+.......-.++|......-|+.. ..+....+.. +...+.+...++...+--.+.++..-.+.+..
T Consensus 225 ~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~ 301 (442)
T COG1457 225 PSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANII 301 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Confidence 2111122335556666677788888888887665 3344444432 44566677777777777777777777777776
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHHHHHHh----hcCchhhHHHHhhhhhhhHHHHHH
Q 018064 255 VKKLNFSPTRLLRFVVRNLYVASTMFIGI----TFPFFGGLLGFFGGFAFAPTTYFL 307 (361)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~iA~----~vp~~~~v~~l~Ga~~~~~~~fil 307 (361)
.+- ++..+.++..+. ..+++|+ +..+++.++.++|+.........+
T Consensus 302 ~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i 351 (442)
T COG1457 302 PKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI 351 (442)
T ss_pred hhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 642 223333333332 2222222 456788888888876654444443
No 52
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.69 E-value=0.0015 Score=60.81 Aligned_cols=225 Identities=12% Similarity=0.150 Sum_probs=130.0
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 92 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~ 92 (361)
.+|..|..++.+||..| .+..+......+..........+|.++...-. +.+.. .......+..-..-.+.
T Consensus 61 ~~~l~~~~~~~~Gk~lg-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp-------~TP~~-~i~~~~ll~~~y~a~~G 131 (320)
T PF03845_consen 61 GKTLVEISEKLFGKWLG-KIINLLYILYFLLISALVLREFSEFIKTYLLP-------ETPIW-VIILLFLLVAAYAARKG 131 (320)
T ss_pred CCCHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cCCHH-HHHHHHHHHHHHHHhcC
Confidence 34899999999999787 56666666666666666666666655543221 11212 22222222233344567
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCCCCC
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 172 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 172 (361)
++.+...+.+-....+.....+...... +.+++.-......++.++..+.-...+.|.+-..+.-+...+ +
T Consensus 132 ~e~i~R~~~~~~~~~~i~~~~i~~~~~~-----~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~ 202 (320)
T PF03845_consen 132 IEVIARVAEILFPIFLILLLLILLLSIP-----NIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----K 202 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----C
Confidence 7777775555555433332222222222 112111012234556778888777888888887777777877 5
Q ss_pred CCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchh-------hhhhCCCCch---HHHHHHHHHHHHHHHHhhccc
Q 018064 173 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED-------NILLSLEKPT---WLIVMANFFVVVHVIGSYQIY 242 (361)
Q Consensus 173 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~-------~il~n~~~~~---~~~~~~~~~~~i~~~~s~pl~ 242 (361)
+|++.. |....+.....++|...-......||.+..+ +..+..+-++ ..-.+.-..-......+.-+.
T Consensus 203 ~~~~~~--k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~ 280 (320)
T PF03845_consen 203 DKKKLK--KSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLY 280 (320)
T ss_pred CchHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554 8888999999999998888888888864221 1112222111 111222233444556666677
Q ss_pred cccHHHHHHHHHhhh
Q 018064 243 AMPVFDMIETLLVKK 257 (361)
Q Consensus 243 ~~p~~~~~~~~~~~~ 257 (361)
.+...+.+.+.++.+
T Consensus 281 ~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 281 LYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHhCCC
Confidence 778888888888655
No 53
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.57 E-value=0.08 Score=52.28 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=61.2
Q ss_pred cccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcC
Q 018064 11 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 90 (361)
Q Consensus 11 ~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~ 90 (361)
.+..|..|.-++-||++..+.+..+...+..++...+-+...+..++.+.+ ++...-+++..++..-.+..
T Consensus 105 ~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~ 175 (483)
T PRK09442 105 YNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG---------ISYETGLLIFGITVALYTAF 175 (483)
T ss_pred cCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHh
Confidence 356799999999999766556666656655555556666666666665532 33344445555666777888
Q ss_pred CCCchhHHHHHHHHHHHHHH
Q 018064 91 PNFNAIAGVSLAAAVMSLSY 110 (361)
Q Consensus 91 ~~l~~L~~~s~~~~~~~~~~ 110 (361)
.-++...++..+-.......
T Consensus 176 GGl~av~~TD~iQ~~i~~~~ 195 (483)
T PRK09442 176 GGFRAVVLTDALQGIVMLVG 195 (483)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 88888888888876655443
No 54
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.072 Score=51.07 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHHhCC
Q 018064 262 PTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKP 318 (361)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~ 318 (361)
+.+.+|...|....+++.++.+...+.+.++.+.+.+.+..+-+..+++..+..+|+
T Consensus 322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 356688888877777766666665599999999999999888888888888777765
No 55
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.45 E-value=0.00051 Score=67.71 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=55.4
Q ss_pred chhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCc
Q 018064 139 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK 208 (361)
Q Consensus 139 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~ 208 (361)
++.++..++....++|.+-......-+|. |||+|. .+|+...+.....++|.......-...+.+
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k~-IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRKT-IPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccC----CCchhh-hhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 36789999999999999999999999999 888765 779999999999999998877666666644
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.36 E-value=0.043 Score=53.52 Aligned_cols=113 Identities=10% Similarity=0.161 Sum_probs=66.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhhcccCC-Ccc-----ccc--cccccccchhhHHHHHHhHHHHccCccchHhhh
Q 018064 93 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQP-DVA-----YGY--KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQ 164 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~-----~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 164 (361)
.|.+++++.+++...++..++.++......... +.+ ++. +...+...-+.+..++-.-.+.+.|-..-..+.
T Consensus 196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~a 275 (550)
T KOG1289|consen 196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMA 275 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHH
Confidence 478888888888877665444443222211111 111 111 111122234456666666677788888999999
Q ss_pred hcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcch
Q 018064 165 ATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE 210 (361)
Q Consensus 165 ~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~ 210 (361)
+|- +|+++. -.|++..+..+.+++=..+-+.-.+.-++|.+
T Consensus 276 EE~----~nAsk~-aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 276 EET----KNASKA-APRGIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred HHh----cchhhh-ccHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 998 777765 46777777777766655555555555554433
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.31 E-value=0.036 Score=50.63 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=56.4
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+.++|+|.-++.+||+++ .+.+..+.+.+++.++.=..-.|..+.+..+ .+...-.++....+.-+.+++
T Consensus 64 ~a~~y~~~~~~v~~~~~~-ki~d~~iif~lf~~~vVM~AGags~~~e~~~---------lP~wiGali~i~~v~i~lfl~ 133 (349)
T COG3949 64 NATSYREILKYVSGPKFA-KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG---------LPYWIGALIIILLVLILLFLG 133 (349)
T ss_pred cccchHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccchhHHHHHhC---------ccHHHHHHHHHHHHHHHHHHh
Confidence 456999999999999999 6889999999999998877777766664432 232333355555555666666
Q ss_pred CCchhHHHHH
Q 018064 92 NFNAIAGVSL 101 (361)
Q Consensus 92 ~l~~L~~~s~ 101 (361)
+.+.+--+..
T Consensus 134 ~vegi~tvn~ 143 (349)
T COG3949 134 RVEGIITVNG 143 (349)
T ss_pred cccceeeehe
Confidence 6666554443
No 58
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.27 E-value=0.088 Score=50.73 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=63.5
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+..|.+|.-+.-||++..|.+..+...+..+....+.+...+..++.+.+ ++...-.++..++..-.+..-
T Consensus 64 ~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g---------i~~~~~~ii~~~i~~~Yt~~G 134 (407)
T TIGR00813 64 GAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG---------LDLYLSLLLLGAITILYTVFG 134 (407)
T ss_pred CCCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHHHHHc
Confidence 45699999999999866667777777777788888888888877776643 333444455555566667777
Q ss_pred CCchhHHHHHHHHHHHHH
Q 018064 92 NFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~ 109 (361)
-++...++..+-.+.++.
T Consensus 135 G~~av~~Td~iQ~~i~~~ 152 (407)
T TIGR00813 135 GLKAVVWTDTIQAVIMIL 152 (407)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 888888888777665443
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.25 E-value=0.23 Score=48.82 Aligned_cols=92 Identities=10% Similarity=0.203 Sum_probs=64.6
Q ss_pred cccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcC
Q 018064 11 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 90 (361)
Q Consensus 11 ~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~ 90 (361)
.+..|.+|.-++-||++..+.+..+...+..++...+-+...+..++.+.+ ++...-+++..++..-.+..
T Consensus 104 ~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~ 174 (471)
T TIGR02119 104 YNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG---------LSYLTALFIFSSSVLIYTTF 174 (471)
T ss_pred cCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHh
Confidence 345699999999999766567777777777777777666666666665532 33344455556666777788
Q ss_pred CCCchhHHHHHHHHHHHHHHH
Q 018064 91 PNFNAIAGVSLAAAVMSLSYS 111 (361)
Q Consensus 91 ~~l~~L~~~s~~~~~~~~~~~ 111 (361)
.-++...++..+-....+...
T Consensus 175 GG~~av~~td~iQ~~v~~~~~ 195 (471)
T TIGR02119 175 GGFRAVALTDAIQGIVMFTGT 195 (471)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 888999988888776554433
No 60
>PRK12488 acetate permease; Provisional
Probab=97.19 E-value=0.31 Score=48.97 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=59.4
Q ss_pred cccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCC
Q 018064 13 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 92 (361)
Q Consensus 13 ~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~ 92 (361)
..|.+|.-++-||++..|.+..+...+..+.-..+-+...+..++.+.+ ++...-+++..++..--+..--
T Consensus 129 ~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g---------i~~~~~iii~~~i~~~Yt~~GG 199 (549)
T PRK12488 129 KYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG---------ISYLYAVVIVGALMVLYVTFGG 199 (549)
T ss_pred CcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhccc
Confidence 4689999888888555567777777766666666666666666655532 3334445555566666777888
Q ss_pred CchhHHHHHHHHHHHHH
Q 018064 93 FNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 93 l~~L~~~s~~~~~~~~~ 109 (361)
++...++..+-.+.++.
T Consensus 200 m~av~~td~iQ~~im~~ 216 (549)
T PRK12488 200 MLATTWVQIIKAVLLLS 216 (549)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88888888877665544
No 61
>PRK11375 allantoin permease; Provisional
Probab=97.19 E-value=0.14 Score=50.53 Aligned_cols=277 Identities=12% Similarity=0.056 Sum_probs=135.8
Q ss_pred ccHHHHHHHhcCccccccchhhhHH-HHhhhhHHHHHHHhhcchHHHHHhhhcC----C----CCccc--hhhHHHHHHH
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQL-IVEVGVCIVYMVTGGKSLHKVHELLCKE----P----CKEIK--LSYFIMIFAS 82 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~-~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~----~~~~~--~~~~~~i~~~ 82 (361)
.++.-++|..||.+ |-.+..+... +..+|--.......++.+..+++...+. + ....+ .....+++.+
T Consensus 89 l~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 89 VPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 48999999999986 5467777764 5667777777777888888776554310 0 00111 1122234445
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhc-ccCCCcccccccc-ccccchhhHHHHHHhHHHHcc-Cccc
Q 018064 83 VHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRK-GVQPDVAYGYKAK-TAAGTVFNFFSALGDVAFAYA-GHNV 159 (361)
Q Consensus 83 ~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~-~~~~ 159 (361)
+..|+.+ ..++.+++++..+............+..... +..+-.+..+++. ........+..++...+-++. .-.+
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~ 246 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS 246 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 5566654 4456666665555554332222211112221 2111111111001 111123444444444333443 3447
Q ss_pred hHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHH----HhhccCcchh--hhhhCCCCchHHHHHHHHHHHH
Q 018064 160 VLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG----YWMFGNKVED--NILLSLEKPTWLIVMANFFVVV 233 (361)
Q Consensus 160 ~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~g----y~~fG~~~~~--~il~n~~~~~~~~~~~~~~~~i 233 (361)
.|+.-+.. |++++.. +.-.+++.+...+...+|+.. ...+|+...| +++.++.+ -....++-+...+
T Consensus 247 ~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~ 319 (484)
T PRK11375 247 ASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILM 319 (484)
T ss_pred ccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHH
Confidence 77887776 4444333 344445555555544444333 3456654333 34444322 2333345555566
Q ss_pred HHHHhh-ccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHh--hcCc---hhhHHHHhhhhhhhHHHHH
Q 018064 234 HVIGSY-QIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGI--TFPF---FGGLLGFFGGFAFAPTTYF 306 (361)
Q Consensus 234 ~~~~s~-pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~--~vp~---~~~v~~l~Ga~~~~~~~fi 306 (361)
+...+- ..+.++.-..+.+.+.++.+ .+|...-..+ +..+++. .+.+ +.+++++.|++.++.....
T Consensus 320 a~~~tN~~~N~ys~~~~l~~l~pk~i~-----~~~~~~i~~i--ig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 320 TTISTNATGNIIPAGYQIAALAPTKLT-----YKNGVLIASI--ISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred HHHHHHHHhhcccHHHHHHHhCcCccc-----hhhHHHHHHH--HHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 666654 35778888878777764422 1222111111 1111111 1223 7788888888777665544
No 62
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.16 E-value=0.28 Score=48.03 Aligned_cols=240 Identities=12% Similarity=0.140 Sum_probs=126.4
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
||....| ...+|+.-+.+.-+|.+| ..+.+.=.++-.-++-.-++..+..++ .|.. ++.+...|..++.+
T Consensus 100 Ema~~~P--~sGsF~~ya~rfvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~----yW~p---~~v~~~~w~~iF~~ 169 (541)
T COG0833 100 ELAVFYP--VSGSFSTYATRFVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQ----YWFP---DTVPPWIWIAIFLV 169 (541)
T ss_pred HHHhhcC--CCCchhhhhhhhcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhh----hhcC---CCCChHHHHHHHHH
Confidence 4444445 334799999999998888 454443333333333333333333333 2221 12456778887776
Q ss_pred HHHHH--hcCCCCchhHHHHH-HHHHHHHHHHHHHHh--hhhhcccCC-CccccccccccccchhhHHHHHHhHHHHccC
Q 018064 83 VHFVL--SHLPNFNAIAGVSL-AAAVMSLSYSTIAWS--ASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDVAFAYAG 156 (361)
Q Consensus 83 ~~lpl--~~~~~l~~L~~~s~-~~~~~~~~~~~i~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~ 156 (361)
+++-+ .-.|...+-.+.-. +=++.++.++++.++ .+...+..+ +.++-.+.....+.+.++...+-+..|+|.+
T Consensus 170 ~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~G 249 (541)
T COG0833 170 LIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSG 249 (541)
T ss_pred HHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeec
Confidence 66554 44566666665433 333333333322222 111111000 1111111223345577888888899999999
Q ss_pred ccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHh-hHHHh-hccCc----------chhhhhhCCCC--chH
Q 018064 157 HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVA-LIGYW-MFGNK----------VEDNILLSLEK--PTW 222 (361)
Q Consensus 157 ~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g-~~gy~-~fG~~----------~~~~il~n~~~--~~~ 222 (361)
...+---..|- +||+|. ..|++.-.+-=..++|+..- +.|.+ .|.|. .+++....+.+ -..
T Consensus 250 tElvgiaAgEs----~nP~K~-iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~ 324 (541)
T COG0833 250 TELVGLAAGES----ENPRKS-IPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPV 324 (541)
T ss_pred eeeeeeeeccc----CCchhh-hHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCcc
Confidence 99887777776 788764 67887766655555555322 22222 33331 11222222211 123
Q ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh
Q 018064 223 LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 257 (361)
Q Consensus 223 ~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 257 (361)
+..+.+.....+++.+--=.++...+++..+=+++
T Consensus 325 ~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g 359 (541)
T COG0833 325 AASIMNAVILTSVLSAANSGLYASSRMLYSLAKQG 359 (541)
T ss_pred chHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcC
Confidence 44566666666666665556777777777765543
No 63
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.10 E-value=0.033 Score=55.52 Aligned_cols=171 Identities=12% Similarity=0.148 Sum_probs=104.5
Q ss_pred hhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhh--ccCc-chhhh---
Q 018064 140 VFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM--FGNK-VEDNI--- 213 (361)
Q Consensus 140 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~--fG~~-~~~~i--- 213 (361)
+.++...+-+..|+|.+-..+-..-+|- |||+|. ..+++..++..+.++|....+.--++ |.+. .+++.
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~----kNP~k~-IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~ 305 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEA----KNPRKA-IPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALA 305 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhc----cCCccc-ccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccc
Confidence 6788899999999999999999999998 888754 77999999999999999877554432 2221 11111
Q ss_pred ---h--hCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhcCC-----CcchhhHHHHHHHHHHHHHHHHh
Q 018064 214 ---L--LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNF-----SPTRLLRFVVRNLYVASTMFIGI 283 (361)
Q Consensus 214 ---l--~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~iA~ 283 (361)
. .+.+.-..+..+.+....+.+..+---.+++..+.+..+-+.+.-+ -.++-+-+...+...+...+.++
T Consensus 306 spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~ 385 (554)
T KOG1286|consen 306 SPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAAL 385 (554)
T ss_pred cHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 1 1111112222366777777777776667788888877774332100 01111223333333344444444
Q ss_pred hcCc-----hhhHHHHhhhhhhhHHHHHHHHHHHHHHhC
Q 018064 284 TFPF-----FGGLLGFFGGFAFAPTTYFLPCIIWLAIYK 317 (361)
Q Consensus 284 ~vp~-----~~~v~~l~Ga~~~~~~~filP~l~~~~~~~ 317 (361)
.... ++.++++.|- ++.+++.+=++.|++.|+
T Consensus 386 ~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 386 NFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence 4432 4677777653 346666666777776663
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.00 E-value=0.38 Score=47.62 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHh
Q 018064 9 PGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLS 88 (361)
Q Consensus 9 ~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~ 88 (361)
+.++..|.+|.-++-||+++.|.+..+...+..++-+..-+...++.++...+ .+...-.++...++..-+
T Consensus 100 ~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g---------i~~~~~~~~~~~~v~~Yt 170 (493)
T COG0591 100 KARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG---------ISYVTGILIGALIVALYT 170 (493)
T ss_pred cccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---------CCHHHHHHHHHHHHHHHH
Confidence 33456699999999999556779999999999999999999999888865543 223333444555666667
Q ss_pred cCCCCchhHHHHHHHHHHHHH
Q 018064 89 HLPNFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 89 ~~~~l~~L~~~s~~~~~~~~~ 109 (361)
..--++...++..+-...+..
T Consensus 171 ~~gG~~av~~Td~iqg~im~i 191 (493)
T COG0591 171 FLGGLRAVVWTDFIQGLIMLI 191 (493)
T ss_pred HHcChhHHHHHHHHHHHHHHH
Confidence 777788888887776665443
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=96.77 E-value=0.5 Score=45.50 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=82.7
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 93 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l 93 (361)
.++.-++|..||.+ |..+..+...+...|-........++.++...+ .+...+.+++.++..+.+... .
T Consensus 71 ~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~---------~~~~~~~~i~~~l~~~~~~~G-~ 139 (404)
T PRK11017 71 LSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG---------LDINLLIVLSGLLMTVTAYFG-I 139 (404)
T ss_pred cCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHHH-H
Confidence 47999999999985 557777777777766666655555554444321 112224445555555555432 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHc-cCccchHhhhhcCCCCCC
Q 018064 94 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAY-AGHNVVLEIQATIPSTPE 172 (361)
Q Consensus 94 ~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~ 172 (361)
+.++++...+........+...+....+....+...+. .+.+...+..++...+-.+ ..-.+.++.-+.. |
T Consensus 140 ~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~----k 211 (404)
T PRK11017 140 SALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAI----VPAEPLDFSAALTLVVGSFISGGTLTADFVRFG----R 211 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcC----CCCCcccHHHHHHHHHHHHHHhHhcCCChHhhc----c
Confidence 44444444443322222211111122211001100010 0111234444554433333 3345677777765 3
Q ss_pred CCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccC
Q 018064 173 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 207 (361)
Q Consensus 173 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~ 207 (361)
+|++-. .....++.+...+...+|.......|+
T Consensus 212 ~~~~~~--~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 212 SAKIAV--LATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred Ccccee--ehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 332221 333455555666666667666556654
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.69 E-value=0.82 Score=45.97 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=55.2
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+..|.+|.-++-||+|.-|.+..+...+..+.-..+.+...+..++.+.+ ++...-+++..++..--+..-
T Consensus 128 g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g---------i~~~~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 128 GRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG---------LNYHVAVVLVGILMVMYVLFG 198 (549)
T ss_pred CCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhh
Confidence 34699999998898655556666666665555555555556655554432 233333445555556666777
Q ss_pred CCchhHHHHHHHHHHHHH
Q 018064 92 NFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~ 109 (361)
-++.-.++..+-.+.++.
T Consensus 199 Gm~av~~td~iQ~~im~~ 216 (549)
T TIGR02711 199 GMLATTWVQIIKAVLLLF 216 (549)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 777878777776655433
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.52 E-value=0.21 Score=48.13 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=51.9
Q ss_pred cccccHHHHHHHhcCccc-cccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhc
Q 018064 11 KRFDRYHELGQHAFGEKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH 89 (361)
Q Consensus 11 ~~~~sy~~l~~~~~G~~~-g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~ 89 (361)
.+..|.+|.-++-||++. .+.+..+...+.......+.+...+..++.+.+ ++.....++...+.+-.+.
T Consensus 66 ~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g---------i~~~~~~~i~~~i~~iYt~ 136 (406)
T PF00474_consen 66 SGAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG---------IPYNTAILIVGVIVIIYTF 136 (406)
T ss_dssp TT--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHTTC
T ss_pred cchhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc---------hhhhHHHHHHHHHHHHhhh
Confidence 355699999999999875 345555555556666666666666666665432 3444455556666666788
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q 018064 90 LPNFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 90 ~~~l~~L~~~s~~~~~~~~~ 109 (361)
.--++...++..+-.+.+..
T Consensus 137 ~GGl~av~~td~iQ~~i~~~ 156 (406)
T PF00474_consen 137 FGGLRAVAWTDFIQGVIMII 156 (406)
T ss_dssp TT------SHHHHHHHHHHH
T ss_pred hhhHhhhhHHHHHHHHHHHH
Confidence 88888888888777765443
No 68
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.69 E-value=2.5 Score=41.96 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=50.3
Q ss_pred ccccHHHHHHHhcCccccccc---hhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHh
Q 018064 12 RFDRYHELGQHAFGEKLGLYI---VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLS 88 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~---v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~ 88 (361)
+..|..|.-++-||++ .|.+ ..+.+.+....-+.+-+...+..++.+. +++...-+++...+..--+
T Consensus 106 ~~~T~~e~l~~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~---------gi~~~~~iii~~~iv~iYt 175 (502)
T PRK15419 106 NALTLPDYFTGRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTF---------GMSYETALWAGAAATILYT 175 (502)
T ss_pred CceeHHHHHHHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHH
Confidence 4458889889999864 2232 2333333333333333333444444332 2344444555666677777
Q ss_pred cCCCCchhHHHHHHHHHHHHH
Q 018064 89 HLPNFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 89 ~~~~l~~L~~~s~~~~~~~~~ 109 (361)
..--++...++-.+-.+.++.
T Consensus 176 ~~GGl~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 176 FIGGFLAVSWTDTVQASLMIF 196 (502)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 888888888888887765544
No 69
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.33 E-value=2.2 Score=40.36 Aligned_cols=84 Identities=10% Similarity=0.151 Sum_probs=53.9
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhc--CC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LP 91 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~--~~ 91 (361)
++..|..++-+||+++ +..-+...+......++-+...+.-++-+. ..+...+.++..+..+-+.+ .+
T Consensus 42 ~~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~---------g~~~~~~~~~~~~~~~~ll~~~~~ 111 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF---------GIPLWIWVLLVAVIAILLLWLSSG 111 (358)
T ss_pred CChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------CCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3788888999998776 666666666667776766666655555442 13335555555554444444 77
Q ss_pred CCchhHHHHHHHHHHH
Q 018064 92 NFNAIAGVSLAAAVMS 107 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~ 107 (361)
+.|.+..+...-...+
T Consensus 112 ~y~~~E~~~~~lv~~m 127 (358)
T PF01566_consen 112 GYRRLERILKVLVAVM 127 (358)
T ss_pred cchHHHHHHHHHHHHH
Confidence 8888887766555544
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=94.95 E-value=4.3 Score=40.18 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=48.5
Q ss_pred cccccHHHHHHHhcCccccccc---hhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHH
Q 018064 11 KRFDRYHELGQHAFGEKLGLYI---VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVL 87 (361)
Q Consensus 11 ~~~~sy~~l~~~~~G~~~g~~~---v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl 87 (361)
.+..|-.|.-++-||++. |.+ ..+...+........-+...+..++.+.+ ++...-+++..++..--
T Consensus 101 ~~~~T~~e~l~~Ryg~~~-~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g---------i~~~~~iii~~~i~~~Y 170 (487)
T TIGR02121 101 HNSITLPDFFENRFNDKS-RLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG---------LDYKTGLLIGALIIVIY 170 (487)
T ss_pred cCCccHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHH
Confidence 345688999999999643 233 22223333333333333444444444322 33333444555556666
Q ss_pred hcCCCCchhHHHHHHHHHHHHH
Q 018064 88 SHLPNFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 88 ~~~~~l~~L~~~s~~~~~~~~~ 109 (361)
+..--++...++..+-.+.++.
T Consensus 171 t~~GGl~av~~TD~iQ~~i~~~ 192 (487)
T TIGR02121 171 TFFGGFLAVSWTDFVQGLLMFF 192 (487)
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 6777778888877777665443
No 71
>PRK00701 manganese transport protein MntH; Reviewed
Probab=94.66 E-value=4.7 Score=39.29 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=42.7
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH--HHHHHhcCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS--VHFVLSHLP 91 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~--~~lpl~~~~ 91 (361)
++..|+.++-||+++. ++.-+...+.+.+..++-++-++.-++.+++ ++.....++... ..+.....+
T Consensus 94 ~~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g---------ip~~~~v~i~~~~~~~~l~l~~~ 163 (439)
T PRK00701 94 RDLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIALKLLFG---------IPLLQGALITALDTFLILMLQRR 163 (439)
T ss_pred CCHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999998665 5555555555556665555555444433221 222333333332 222222356
Q ss_pred CCchhHHHHH
Q 018064 92 NFNAIAGVSL 101 (361)
Q Consensus 92 ~l~~L~~~s~ 101 (361)
+.+.+..+..
T Consensus 164 ~y~~~E~i~~ 173 (439)
T PRK00701 164 GFRPLEAIIG 173 (439)
T ss_pred CccHHHHHHH
Confidence 6788877754
No 72
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=94.39 E-value=0.053 Score=52.81 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=40.0
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhh
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELL 63 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~ 63 (361)
++..++|..||. .|..+..+...+...|-......+.++.+..+.+..
T Consensus 72 ~~~v~sR~~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 72 PTMVLSRASFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp -HHHHTTTTS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CchhcchhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 688899999997 577888888889999999999999999999988764
No 73
>PRK09395 actP acetate permease; Provisional
Probab=94.36 E-value=6.4 Score=39.60 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=55.9
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
...|+.|.-+.-||+|.-|.+..+...+..+....+-+.-.+..++.+.+ ++...-+++..++..--+..-
T Consensus 130 g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g---------i~~~~~ili~~~i~~iYt~~G 200 (551)
T PRK09395 130 GKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG---------LNYHVAVVLVGVLMMVYVLFG 200 (551)
T ss_pred CCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhhc
Confidence 44699999999998654456666665555555555555555555554422 344444555556666667777
Q ss_pred CCchhHHHHHHHHHHHHH
Q 018064 92 NFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~ 109 (361)
-++...++..+-.+.++.
T Consensus 201 Gm~av~~TD~iQ~iim~~ 218 (551)
T PRK09395 201 GMLATTWVQIIKAVLLLS 218 (551)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 788888877766554443
No 74
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=94.24 E-value=0.11 Score=44.09 Aligned_cols=146 Identities=15% Similarity=0.216 Sum_probs=93.7
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhc--------CCCC-c----c--------c
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK--------EPCK-E----I--------K 72 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~--------~~~~-~----~--------~ 72 (361)
.+.+|++...|.| .|-.+..++++++++|-+..|-..+....-++.....+ ++|. + | .
T Consensus 130 vemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmda 208 (319)
T KOG3832|consen 130 VEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDA 208 (319)
T ss_pred hhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhhcCCccccccCCcccccccccchHHHhhhHH
Confidence 4788999999986 67789999999999999999999888877777654321 1121 1 2 2
Q ss_pred hhhHHHHHHH-HHHHHhcC--CCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHh
Q 018064 73 LSYFIMIFAS-VHFVLSHL--PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGD 149 (361)
Q Consensus 73 ~~~~~~i~~~-~~lpl~~~--~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (361)
++++..++.+ +.+|+.+. .+-|.++.+..+.-+.... ..+.+. ..+. .++. . +..+.....-++...++.
T Consensus 209 yr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~~-~g~~l~-tmqa--eeda--a-~a~p~arc~cgfgkl~~~ 281 (319)
T KOG3832|consen 209 YRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAFI-LGISLA-TMQA--EEDA--A-AAHPPARCFCGFGKLFGC 281 (319)
T ss_pred HHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhcc-chhhhh-hhhh--cccc--c-ccCCccccccccccccch
Confidence 3445555554 44788774 4677777777666664322 111111 0111 1111 1 112223334566677899
Q ss_pred HHHHccCccchHhhhhcC
Q 018064 150 VAFAYAGHNVVLEIQATI 167 (361)
Q Consensus 150 ~~faf~~~~~~~~i~~~m 167 (361)
..|+|.+|.+.|.....+
T Consensus 282 aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 282 ALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhHHHHhhccCCCCCCCC
Confidence 999999999999998877
No 75
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=94.04 E-value=7.5 Score=39.15 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=56.0
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+..|-.|.-++-||+|..|.+..+...+..+....+.+...+..++.+.+ ++...-+++..++..--+..-
T Consensus 93 ~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g---------i~~~~~iii~~~i~~iYt~~G 163 (552)
T TIGR03648 93 GKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE---------VDFETGVFIGMAIVFFYAVLG 163 (552)
T ss_pred CCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhh
Confidence 44588888888888666567766666666666666666666666555432 333333445555566666777
Q ss_pred CCchhHHHHHHHHHHHH
Q 018064 92 NFNAIAGVSLAAAVMSL 108 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~ 108 (361)
-+|...++-.+-.+.++
T Consensus 164 G~~aV~~TD~iQ~iim~ 180 (552)
T TIGR03648 164 GMKGVTWTQVAQYIVLI 180 (552)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78888887777755443
No 76
>PRK10484 putative transporter; Provisional
Probab=93.22 E-value=10 Score=37.97 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=46.6
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHH-HhhcchHHHHHhhhcCCCCccchh--hHH--HHHHHHHHH
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMV-TGGKSLHKVHELLCKEPCKEIKLS--YFI--MIFASVHFV 86 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i-~~~~~l~~~~~~~~~~~~~~~~~~--~~~--~i~~~~~lp 86 (361)
+..|..|.-++-||++.. .+......+......++... ..+..+..+.+.. ...+.+.. .+. ++..++..-
T Consensus 99 ~~~T~~e~l~~Ryg~~~~-~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~---~~~gi~~~~~~~~~~~~~~~i~~~ 174 (523)
T PRK10484 99 GITTIPDFLEERYDKTTR-RIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS---ELLGISYGAAIWLLVWLIGIIGAI 174 (523)
T ss_pred CCccHHHHHHHhcCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hhcCCcHHHHHHHHHHHHHHHHhh
Confidence 456999999999998754 44444433332222222222 2222222222110 00112222 221 222334455
Q ss_pred HhcCCCCchhHHHHHHHHHHHHH
Q 018064 87 LSHLPNFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 87 l~~~~~l~~L~~~s~~~~~~~~~ 109 (361)
-+..--++...++-.+-.+.++.
T Consensus 175 Yt~~GGl~aV~~TD~iQ~vim~i 197 (523)
T PRK10484 175 YAVFGGLKAVAVSDTINGIGLLI 197 (523)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 66777888888888887765544
No 77
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=91.81 E-value=13 Score=36.10 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=98.0
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
...|++|....-|+.+..|++..+...+-.+.-.++.++-.|..+..+++- +...-.++..++++--....
T Consensus 102 GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv---------~~~vgv~ig~ilm~~Yvv~G 172 (529)
T COG4147 102 GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV---------PYHVGVVIGGILMMVYVVLG 172 (529)
T ss_pred CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC---------CceeehhhHhHHHHHHHHhc
Confidence 456999988888877666777777777666777777777777777766542 22233344445555556677
Q ss_pred CCchhHHHHHHHHHHHHH-HHHHHHhhhhhcccCCC-----------c----cccccccccccchhhHHHHHHhHHHHcc
Q 018064 92 NFNAIAGVSLAAAVMSLS-YSTIAWSASVRKGVQPD-----------V----AYGYKAKTAAGTVFNFFSALGDVAFAYA 155 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~~~-~~~i~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~faf~ 155 (361)
-|+.-.|+-..--...+. +++..+.-...-+-.+. . +...+.. ...++.++..-.=..++...
T Consensus 173 GM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl-~~~~~i~~isl~~aLm~GTA 251 (529)
T COG4147 173 GMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGL-LYKDPIDFISLGFALMVGTA 251 (529)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCC-cccCHHHHHHHHHHHHHccC
Confidence 788888877665543222 22221111111111110 0 0000111 12333444443334455554
Q ss_pred Cc-cchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHh
Q 018064 156 GH-NVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYW 203 (361)
Q Consensus 156 ~~-~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~ 203 (361)
+- +.+...+.-+ +-+.-|+.+.++......+|+..-..|+.
T Consensus 252 gLPHil~RFfTvp-------~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 252 GLPHILMRFFTVP-------DAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred CCCeEEEEEEecC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3445555543 33333489999999999999988777765
No 78
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=90.30 E-value=19 Score=35.27 Aligned_cols=190 Identities=12% Similarity=0.089 Sum_probs=89.9
Q ss_pred hhhHHHHHHhHHHHc-cCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHH----HhHhhHHHhhccCcc--hhh
Q 018064 140 VFNFFSALGDVAFAY-AGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCY----FPVALIGYWMFGNKV--EDN 212 (361)
Q Consensus 140 ~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y----~~~g~~gy~~fG~~~--~~~ 212 (361)
++.+...+...+-.| ....|+|+.-+.- |+|++-. +--.+++-+.+.+. ...+..++..||++. +.+
T Consensus 239 ~w~~~~~~~~~v~~~Atl~lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~d 312 (497)
T COG1953 239 SWAFLAGIAAWVGFWATLALNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLD 312 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHH
Confidence 344444443333333 3345788887776 3433332 22224444444444 444456788999884 447
Q ss_pred hhhCCCCchHHHHHHHHHHHHHHHH-hhccccccHHHHHHHHHhhhcCCCcchhhHHH---HHHHHHHHHHHHHhhcCch
Q 018064 213 ILLSLEKPTWLIVMANFFVVVHVIG-SYQIYAMPVFDMIETLLVKKLNFSPTRLLRFV---VRNLYVASTMFIGITFPFF 288 (361)
Q Consensus 213 il~n~~~~~~~~~~~~~~~~i~~~~-s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iA~~vp~~ 288 (361)
+..++.++.....++.+.+++..+. ...-+..+.-..+...+.+.-+ .||-. ..+.+.++..-+=..-..+
T Consensus 313 i~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~Pk~in-----~krg~liaA~ial~~~PW~l~~s~s~f 387 (497)
T COG1953 313 IVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYDLSALFPKYIN-----IKRGGLIAAIIALLICPWNLLESSSSF 387 (497)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHHHHHhcccccc-----hhhhHHHHHHHHHHHcChHHHcCccHH
Confidence 8888876444331344444443332 2223344444445555554422 22222 1112222222221223346
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHHhCCCCchh-------h----H---HHHHHHHHHHHHHHHHH
Q 018064 289 GGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSL-------S----W---CINWICIVLGLCLMILS 342 (361)
Q Consensus 289 ~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~~~~~-------~----~---~~~~~i~~~g~~~~v~g 342 (361)
..+++..|++.+++....+- =|+..+|+|.... + + +-+.+-.+.|.+..+.|
T Consensus 388 ~~~L~~yg~~LgpiaGVmia--Dyflirk~~~~v~~ly~~~G~y~y~~G~N~rA~~A~~~G~~~~l~G 453 (497)
T COG1953 388 TTFLGSYGVFLGPIAGVMIA--DYFLVRKGRLNLDELYTEPGEYYYYGGWNWRAFAAYLCGVAPSLPG 453 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhhcCccChHHhcCCCCCeEEecCcCHHHHHHHHHhhhccccc
Confidence 66666666777766655432 2445555542110 0 0 34455556666666655
No 79
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.95 E-value=25 Score=33.50 Aligned_cols=136 Identities=11% Similarity=0.109 Sum_probs=64.6
Q ss_pred Hhhhh-cCCCCCCCCCCccCcchhhh---HHHHHHHHHHhHhhHHHhhccC---c-chhhhhhCCC---CchHHHHHHHH
Q 018064 161 LEIQA-TIPSTPEKPSKGPMWRGVVV---AYIVVALCYFPVALIGYWMFGN---K-VEDNILLSLE---KPTWLIVMANF 229 (361)
Q Consensus 161 ~~i~~-~m~~~~~~p~~~~~~~~~~~---a~~~~~~~Y~~~g~~gy~~fG~---~-~~~~il~n~~---~~~~~~~~~~~ 229 (361)
-.+.+ |+ +||++.. +++... +......+|.-.+..|...-+. . ..+.++.+.. -++....+..+
T Consensus 201 ~~i~~~g~----~~~~~~~-~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i 275 (378)
T TIGR00796 201 NAIRSRGV----TKPKKIT-KYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGL 275 (378)
T ss_pred HHHHHhCC----CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHH
Confidence 33344 77 5555542 234433 4444556677777777654331 1 1223333321 12333445555
Q ss_pred HHHHHHHHhhccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHH
Q 018064 230 FVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPC 309 (361)
Q Consensus 230 ~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~ 309 (361)
.+.++.+++---....+.+.+++...+ . ....+-....+.+.+++. -.++.++++ +...+.++.|.
T Consensus 276 ~v~lACLtT~iGli~~~a~~f~~~~~k---~-----~y~~~v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~ 341 (378)
T TIGR00796 276 IITLACLTTAVGLTTACSEYFHKLVPK---L-----SYKTWVIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPL 341 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---C-----CHHHHHHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHH
Confidence 566665555444444455555554321 1 111122222233333333 267777774 56777888887
Q ss_pred HHHHHH
Q 018064 310 IIWLAI 315 (361)
Q Consensus 310 l~~~~~ 315 (361)
..-+..
T Consensus 342 ~i~lil 347 (378)
T TIGR00796 342 AIVLIL 347 (378)
T ss_pred HHHHHH
Confidence 654433
No 80
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=83.51 E-value=45 Score=32.34 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhHhhHHHhhccC---cch-hhhhhCCCC---chHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh
Q 018064 185 VAYIVVALCYFPVALIGYWMFGN---KVE-DNILLSLEK---PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 257 (361)
Q Consensus 185 ~a~~~~~~~Y~~~g~~gy~~fG~---~~~-~~il~n~~~---~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 257 (361)
++...-.++|...+..|...-+. +.+ +.++.+..+ ++....+..+.+.++.+++---+...+.+.+++..+ +
T Consensus 230 ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-k 308 (427)
T PF05525_consen 230 IAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-K 308 (427)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 55555567788888877765543 222 234433321 233445566666777666666666777777777765 2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHH
Q 018064 258 LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAI 315 (361)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~ 315 (361)
.+. ++++ .+..+.++++| .=.++.++++ +...+.++.|...-+.+
T Consensus 309 --isY---~~~v--~i~~i~S~~ia--n~Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 309 --ISY---KVWV--IIFTIFSFIIA--NLGLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred --cCh---HHHH--HHHHHHHHHHH--HhCHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 111 1111 11112222222 2245566665 45788899998765544
No 81
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=82.92 E-value=7 Score=37.25 Aligned_cols=68 Identities=16% Similarity=0.368 Sum_probs=52.8
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 90 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~ 90 (361)
.-..+++++.+|+ .|+.+..+.+.+.|++++++.....+|.++++.+ ..+++.|.++..+...-++..
T Consensus 255 ~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~--------k~~y~~~v~~~~l~s~~ia~~ 322 (378)
T TIGR00796 255 QILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP--------KLSYKTWVIVFTLFSFIVANL 322 (378)
T ss_pred HHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHh
Confidence 4678999999997 6779999999999999999999998888877633 255666766666555544443
No 82
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=77.83 E-value=11 Score=35.59 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=73.3
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 93 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l 93 (361)
+|.+|++++..||+. |.+..+...+.+.-...++.....+.+.+.-+ .....++.+...+.+-+..-|+=
T Consensus 114 ~Si~~i~~~~lG~~~-~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~---------~~~~~~~~I~~Ai~~G~~~y~~~ 183 (376)
T PF02554_consen 114 KSIGEIAGKYLGKRA-KKLFLIFIFFLLILVIAVFADVVANTFVNSPW---------AATSSLLFIPIAILFGLLVYKRG 183 (376)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccChh---------HHHHHHHHHHHHHHHhHhheecC
Confidence 499999999999864 58888888888888888887777666654211 12233444555555555554444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcC
Q 018064 94 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 167 (361)
Q Consensus 94 ~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 167 (361)
-++...+.+++...+..+ +.+... |- + ...... --.+.+.|..-..+.|+-.=+
T Consensus 184 ~~~~~~t~i~vvll~~~v----~~G~~~---p~---~---~~~~~~-------W~~ii~~Y~~iAs~lPVw~Ll 237 (376)
T PF02554_consen 184 GNLGPATIIGVVLLLLAV----WLGMYF---PI---S---LLSVTT-------WIIIIFIYYFIASVLPVWKLL 237 (376)
T ss_pred CchHhhHHHHHHHHHHHH----Hhhhhc---cc---c---cCcHHH-------HHHHHHHHHHHHHHhhHHHHh
Confidence 456666666666432211 111111 10 0 001111 223677788888899998876
No 83
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=77.47 E-value=69 Score=30.71 Aligned_cols=80 Identities=9% Similarity=0.075 Sum_probs=40.9
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHH--HHHHHHHHhcCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMI--FASVHFVLSHLP 91 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i--~~~~~lpl~~~~ 91 (361)
++..|++++-+|+ ++++..-+...+...+..++...-.+.-++-+++ .+.....++ ...+.+.+...+
T Consensus 64 ~~l~~~~r~~~~~-~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g---------~p~~~~v~~~~~~~~~~~~~~~~ 133 (390)
T TIGR01197 64 LDLAEVCREHYPK-VPRITLWILAELAIIATDMAEVIGTAIALNLLSH---------IPLWGGVLITIVDVFLFLFLDKP 133 (390)
T ss_pred CCHHHHHHHHCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHHHhC
Confidence 4799999999986 5545444444444444444444433333333221 222223333 223334444567
Q ss_pred CCchhHHHHHHH
Q 018064 92 NFNAIAGVSLAA 103 (361)
Q Consensus 92 ~l~~L~~~s~~~ 103 (361)
+.+.+..+-..-
T Consensus 134 ~yr~~E~~~~~l 145 (390)
T TIGR01197 134 GLRILEAFVALL 145 (390)
T ss_pred CceeHHHHHHHH
Confidence 777777764333
No 84
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=76.58 E-value=71 Score=30.37 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=56.0
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCC
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLP 91 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~ 91 (361)
+..|..|+-++-|-.+.-.++.++.+.+...+..++..+-.+..+....+ .++.+-.++++..+.--....
T Consensus 104 nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g---------idY~tgL~ifa~~V~iYt~fG 174 (473)
T COG4145 104 NALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG---------IDYTTGLLIFAVSVAIYTAFG 174 (473)
T ss_pred CCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC---------CCchhhHHHHHHHHHHHHhhc
Confidence 34578888888875445557777788888888888888877777765533 344555666666665555555
Q ss_pred CCchhHHHHHHHHHHH
Q 018064 92 NFNAIAGVSLAAAVMS 107 (361)
Q Consensus 92 ~l~~L~~~s~~~~~~~ 107 (361)
-.|.....-.+--..+
T Consensus 175 GFRAvvltD~IQG~vm 190 (473)
T COG4145 175 GFRAVVLTDTIQGLVM 190 (473)
T ss_pred ceeeeehHHHHHHHHH
Confidence 5555555444444433
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=72.82 E-value=9.1 Score=37.04 Aligned_cols=67 Identities=15% Similarity=0.353 Sum_probs=55.2
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcC
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 90 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~ 90 (361)
=..+++++.+|+ .|+.+..+++.+.|+-++++-....+|..++..+ ..+++.|..++.++-.-++..
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~--------kisY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP--------KISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccChHHHHHHHHHHHHHHHHh
Confidence 578899999997 6889999999999999999999999999998865 256677777777666665444
No 86
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=72.23 E-value=1.1e+02 Score=30.56 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhh-cccCCCccccc-cccccccchhhHHHHHHhHHHHccCc-cchH
Q 018064 85 FVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVR-KGVQPDVAYGY-KAKTAAGTVFNFFSALGDVAFAYAGH-NVVL 161 (361)
Q Consensus 85 lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~-~~~~ 161 (361)
.-++..|-++....+..+....-....++..+++.. .|..++.++-. ++.....+..-...+++=..|+++.- ..+.
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~i 270 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMI 270 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEE
Confidence 444556777776666555543222222233333332 22222211100 12222222233467888888888654 4444
Q ss_pred hhhhcC
Q 018064 162 EIQATI 167 (361)
Q Consensus 162 ~i~~~m 167 (361)
..-+-+
T Consensus 271 t~~Sy~ 276 (523)
T PF00209_consen 271 TYGSYN 276 (523)
T ss_dssp HHHTTS
T ss_pred EEcCcC
Confidence 444443
No 87
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=67.67 E-value=1.2e+02 Score=29.38 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhh
Q 018064 12 RFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC 64 (361)
Q Consensus 12 ~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~ 64 (361)
...+|++++. +|+| ..+........+..+.-|.++.|-.+..+.....
T Consensus 73 ~~~a~~~l~~---~~~~--~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~t 120 (439)
T COG0733 73 AVGAFRKLAP---KKKW--EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLT 120 (439)
T ss_pred hhHHHHHhcc---Cccc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446777766 5543 3556666777788888888888888877765543
No 88
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=66.09 E-value=14 Score=35.25 Aligned_cols=67 Identities=16% Similarity=0.333 Sum_probs=55.3
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcC
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 90 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~ 90 (361)
=.++..++.||+ .|+.+..+++.+.|+-++++-+..++|..++.++. .++..|..++.++-+-++..
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~--------~SY~~~v~if~i~sflvan~ 330 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK--------LSYKTWVIIFTLISFLVANL 330 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHHHHHHHHHHHHHHHh
Confidence 467788999997 78899999999999999999999999999988652 56777888777766665443
No 89
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=60.72 E-value=30 Score=29.53 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.0
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHHhCCC----------CchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018064 289 GGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR----------KYSLSWCINWICIVLGLCLMILSPIGGLRQIILQ 353 (361)
Q Consensus 289 ~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~----------~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~ 353 (361)
+.-.-+.|++.+.-+..++|+...+...++. ..+.+.....+.-.+|+++.+.+...|...|.+.
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3455677889999999999999999988763 1233446777888888888888888888887763
No 90
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=54.64 E-value=2.7e+02 Score=28.96 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=40.0
Q ss_pred hhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhH
Q 018064 141 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALI 200 (361)
Q Consensus 141 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 200 (361)
.++...||++.-+-.+...=-..-.|+ |+|++. ..|-...+...++++|.+....
T Consensus 294 ~~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSkS-IP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMAGANMSGEL----KAPSKS-IPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred eehhhhheeeeccchhhhcCCCcCccc----cCcccc-CCccchHHHHHHHHHHHHHHHH
Confidence 356667777776666665556667777 889886 5677778888999999887544
No 91
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=52.76 E-value=2.4e+02 Score=27.75 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhc--CchhhHHHHhhhhhhhHHHHHHHHHHHHHHh
Q 018064 262 PTRLLRFVVRNLYVASTMFIGITF--PFFGGLLGFFGGFAFAPTTYFLPCIIWLAIY 316 (361)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~iA~~v--p~~~~v~~l~Ga~~~~~~~filP~l~~~~~~ 316 (361)
++|.+|.+.|.+-+++++++++.. .+++...++.--+-+..+=|..=++++....
T Consensus 354 ~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~ 410 (503)
T KOG1291|consen 354 PPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSS 410 (503)
T ss_pred hHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhcc
Confidence 467889999999999999999875 4566666665443333333333334444443
No 92
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=48.22 E-value=2.6e+02 Score=26.97 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=86.4
Q ss_pred chhhhHHHHHHHH-HHhHhhHHHhhccCcchhhhhhCCCCchHHHHHHHHHHHHHH--HHhhccccccHHHHHHHHHhh-
Q 018064 181 RGVVVAYIVVALC-YFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHV--IGSYQIYAMPVFDMIETLLVK- 256 (361)
Q Consensus 181 ~~~~~a~~~~~~~-Y~~~g~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~~i~~--~~s~pl~~~p~~~~~~~~~~~- 256 (361)
+++..+..+.... .++....++..|+.--++..-+-+.+.+-............. ..++|...++.+......+.-
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~ 304 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVY 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCch
Confidence 3355555555444 556677777777753332222223343334444444443333 378888888888765543321
Q ss_pred ---------hcCCCcchhhHHHHHHHHHHHHHHHHhhcC-chhhHHHHhhhhhhhHHHHHHHHHHHHHHhCCC
Q 018064 257 ---------KLNFSPTRLLRFVVRNLYVASTMFIGITFP-FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPR 319 (361)
Q Consensus 257 ---------~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp-~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~ 319 (361)
..+....+..|..........+.+.++..| .+....+.+|++...+.+-++|.+++++-++..
T Consensus 305 lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 305 LGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred hhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111122333466666677777888888877 577888888989999999999999998886544
No 93
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=46.72 E-value=26 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=20.4
Q ss_pred chhhhHHHHHHHHHHhHhhHHHhhccCc
Q 018064 181 RGVVVAYIVVALCYFPVALIGYWMFGNK 208 (361)
Q Consensus 181 ~~~~~a~~~~~~~Y~~~g~~gy~~fG~~ 208 (361)
.+...++.+..++-.+.|..-|.+||..
T Consensus 3 ~a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 3 TATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred ceeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 3455667777777778888888899854
No 94
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=43.85 E-value=51 Score=23.99 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=40.5
Q ss_pred HHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhh-hHHHHHHHHHHhHhhHHHhhccCcchhh
Q 018064 144 FSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV-VAYIVVALCYFPVALIGYWMFGNKVEDN 212 (361)
Q Consensus 144 ~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~-~a~~~~~~~Y~~~g~~gy~~fG~~~~~~ 212 (361)
....|++..+-.|...+.+..+.- .+|+++.+ |+++ +++++ .+-+++|++.|-+||...++.
T Consensus 14 vli~GIiLL~~ACIFAfidFSK~~----s~~~~~~w-RalSii~FIl--G~vl~lGilifs~y~~C~~~~ 76 (91)
T PHA02680 14 VLICGVLLLTAACVFAFVDFSKNT----SNVTDYVW-RALSVTCFIV--GAVLLLGLFVFSMYRKCSGSM 76 (91)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccC----CCCcchhH-HHHHHHHHHH--HHHHHHHHHHHHHhcccCCCc
Confidence 345677777777888888888763 46777754 4444 33333 345677899999999555443
No 95
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=43.36 E-value=58 Score=31.72 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=52.9
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcC
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 90 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~ 90 (361)
=.....++.+|+ +|+.+..+.+...|+-++++-....+|.+++..+ .+++.|..+..++.++++..
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcHHHHHHHHHHHHHHHHHh
Confidence 345668889997 7889999999999999999999999998876632 56677777777777876554
No 96
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=42.03 E-value=27 Score=29.14 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhHHHHh
Q 018064 268 FVVRNLYVASTMFIGITFPFFGGLLGFF 295 (361)
Q Consensus 268 ~~~~~~~~~~~~~iA~~vp~~~~v~~l~ 295 (361)
.....+......++...+|.++.+++..
T Consensus 128 l~~~~~~~~~l~~~i~~~P~~~~~f~~~ 155 (182)
T PF00689_consen 128 LLIAILISIALQILIVYVPGLNRIFGTA 155 (182)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHST--
T ss_pred HHHHHHHHHHHHHHHhcchhhHhhhccc
Confidence 3444444444555556688877777665
No 97
>CHL00020 psbN photosystem II protein N
Probab=41.72 E-value=22 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=20.1
Q ss_pred chhhhHHHHHHHHHHhHhhHHHhhccCc
Q 018064 181 RGVVVAYIVVALCYFPVALIGYWMFGNK 208 (361)
Q Consensus 181 ~~~~~a~~~~~~~Y~~~g~~gy~~fG~~ 208 (361)
.+...++.+..++..+.|..-|.+||..
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 4556667777777777777778888864
No 98
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=40.67 E-value=25 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=21.1
Q ss_pred cchhhhHHHHHHHHHHhHhhHHHhhccCc
Q 018064 180 WRGVVVAYIVVALCYFPVALIGYWMFGNK 208 (361)
Q Consensus 180 ~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~ 208 (361)
..+..+++.+..++..+.|..-|.+||..
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 35666677777777777777778888864
No 99
>PRK15015 carbon starvation protein A; Provisional
Probab=36.63 E-value=1.8e+02 Score=29.90 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=27.6
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcch
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSL 56 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l 56 (361)
+|..|++++-.|++.| .+..+.+++.+.-...++...+.+.+
T Consensus 145 rSig~ia~~~iG~~~~-~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 145 RSLGELVKEEMGPTAG-VIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred ccHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999998755 66655555555555555544444443
No 100
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=35.86 E-value=1.2e+02 Score=24.80 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=36.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHhCCCCc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 018064 294 FFGGFAFAPTTYFLPCIIWLAIYKPRKY-SLSWCINWICIVLGLCLMILSPIGGLRQIILQ 353 (361)
Q Consensus 294 l~Ga~~~~~~~filP~l~~~~~~~~~~~-~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~ 353 (361)
..|+..+...+|..|...+..-.+..+. +..+---.+-+++|+..+++|+..+-+...++
T Consensus 34 ~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~k 94 (152)
T PF07954_consen 34 NLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNK 94 (152)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788899999876541111111 11112235567888888888888877766554
No 101
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=35.49 E-value=4.3e+02 Score=25.81 Aligned_cols=116 Identities=10% Similarity=0.021 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhHhhHHHhhcc---Cc-chhhhhhCCC---CchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhh
Q 018064 185 VAYIVVALCYFPVALIGYWMFG---NK-VEDNILLSLE---KPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 257 (361)
Q Consensus 185 ~a~~~~~~~Y~~~g~~gy~~fG---~~-~~~~il~n~~---~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 257 (361)
+|...-.++|...+..|...-+ +. ..+.++...- -+++...+..+.+.+..+++-.-....+.+.+++...
T Consensus 234 ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-- 311 (439)
T PRK15433 234 MAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-- 311 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Confidence 5555567778888888875432 11 1223333221 1244445555666666666655555666666555542
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHHHHHHHHH
Q 018064 258 LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAI 315 (361)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~ 315 (361)
. .+-.+.....+.++.+|. =.+++++++ ....+.++.|...-+.+
T Consensus 312 --i-----sY~~~v~i~~l~S~~lSn--~G~~~II~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 312 --L-----SYRTLVFILGGFSMVVSN--LGLSQLIQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred --C-----cHHHHHHHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 1 111111122222222221 134455544 55788888888664443
No 102
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=34.69 E-value=1.6e+02 Score=29.82 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=39.7
Q ss_pred hhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhH
Q 018064 141 FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPV 197 (361)
Q Consensus 141 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~ 197 (361)
..++..|+++.-+..+.-.=..+-.++ ++|++. .++....|..+...+|..+
T Consensus 223 ~tfF~vf~vfFpaatgilaG~nisGdL----~~Pq~~-IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 223 YTFFSVFAVFFPAATGILAGANISGDL----KDPQKA-IPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred CceEeeeeeecchhhhhhccccccCCC----CCchhh-cccchhhhhhhhhhhhhhh
Confidence 467788888888888877777888888 777765 4566777888888888543
No 103
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=34.65 E-value=2.3e+02 Score=25.31 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhcCCCcchhhHHH-HHHHHH----------H----HHHHHH--
Q 018064 220 PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFV-VRNLYV----------A----STMFIG-- 282 (361)
Q Consensus 220 ~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~----~~~~iA-- 282 (361)
.+....-.++...+++..+.|...+..-..+...+.++.|. ...+.. ....+. + ...+..
T Consensus 75 ~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~Er~---~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~ 151 (249)
T CHL00182 75 GEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKERK---IILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYG 151 (249)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667778999999999999998876666666665554221 111111 111110 0 011111
Q ss_pred ----hhcCchhhHHHHhhh-hhhhHHHHHHHHHHHHHHhC
Q 018064 283 ----ITFPFFGGLLGFFGG-FAFAPTTYFLPCIIWLAIYK 317 (361)
Q Consensus 283 ----~~vp~~~~v~~l~Ga-~~~~~~~filP~l~~~~~~~ 317 (361)
...+++++.++++-. .....++|-+|.+...-.+-
T Consensus 152 ~~~~~~~~~i~~Yl~f~~~~~l~fGl~FelPvi~~~L~~~ 191 (249)
T CHL00182 152 SDVVEPLWSFDQYFDFILVLFFSTGLAFQIPIIQIVLGLL 191 (249)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 122355665555433 34556788899998877663
No 104
>PRK09928 choline transport protein BetT; Provisional
Probab=31.70 E-value=6.1e+02 Score=26.39 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=43.2
Q ss_pred ccHHHHHHHhcCcc----ccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhc
Q 018064 14 DRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH 89 (361)
Q Consensus 14 ~sy~~l~~~~~G~~----~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~ 89 (361)
.+.++..+-.+|++ +| -+++++..+...+....-+-+...+++.-++...+.+.+ ......+++...++.-+|.
T Consensus 174 l~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~-~~~q~~ii~vi~~i~~~S~ 251 (679)
T PRK09928 174 LTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPES-LAAQAALIALSVIIATISV 251 (679)
T ss_pred CchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 34555444444432 66 466766666655555555555556666666665532211 1112222222223333333
Q ss_pred CCCC-chhHHHHHHHHHHH
Q 018064 90 LPNF-NAIAGVSLAAAVMS 107 (361)
Q Consensus 90 ~~~l-~~L~~~s~~~~~~~ 107 (361)
..-+ |-.+++|-+.....
T Consensus 252 ~sGl~KGIk~LS~lN~~La 270 (679)
T PRK09928 252 TSGVNKGIRVLSELNVLLA 270 (679)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333 44555555555543
No 105
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=31.48 E-value=2e+02 Score=24.38 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhc
Q 018064 307 LPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKD 356 (361)
Q Consensus 307 lP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~~~~ 356 (361)
+|.++-+...++++.+..+...+...++|+.-.+.|......+..+-.+|
T Consensus 83 ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~ 132 (186)
T PF07086_consen 83 IPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRH 132 (186)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455444444444333333445555555555555555555555444433
No 106
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=30.40 E-value=73 Score=23.41 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhh-hHHHHHHHHHHhHhhHHHhhccCcc
Q 018064 143 FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV-VAYIVVALCYFPVALIGYWMFGNKV 209 (361)
Q Consensus 143 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~-~a~~~~~~~Y~~~g~~gy~~fG~~~ 209 (361)
-....|++..+..|...+.+..+. ++|++..+ |+++ ++++ ..+-+.+|..-|-+||...
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~-----~~~~~~~w-RalSii~FI--~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKN-----TKPTDYTW-RALSIICFI--LGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccC-----CCCchhHH-HHHHHHHHH--HHHHHHHHHHHHHHHhhhc
Confidence 345678888888898888999887 66777653 4444 3332 3345678888888898665
No 107
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=30.12 E-value=5.3e+02 Score=25.94 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=38.9
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHh
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 62 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~ 62 (361)
...++=..+.|+|+. ......+++..+..+++-++..+....+..++
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 577778888999877 88888888889999999998888887777654
No 108
>PHA02898 virion envelope protein; Provisional
Probab=29.18 E-value=52 Score=24.00 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=40.8
Q ss_pred HHHHHHhHHHHccCccchHhhhhcCCCCCCCCCCccCcchhh-hHHHHHHHHHHhHhhHHHhhccCcchhh
Q 018064 143 FFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV-VAYIVVALCYFPVALIGYWMFGNKVEDN 212 (361)
Q Consensus 143 ~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~-~a~~~~~~~Y~~~g~~gy~~fG~~~~~~ 212 (361)
-....|++..+-.|...+.+..++ ++|+++.+ |+++ ++++ ..+-+++|++-|-+||....++
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~-----~~~~~~~w-RalSii~FI--lgivl~lG~~ifs~y~r~C~~~ 75 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKS-----EKPADSAL-RSISIISFI--LAIILILGIIFFKGYNMFCGGN 75 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcC-----CCcchhHH-HHHHHHHHH--HHHHHHHHHHHHHHHhhhcCCC
Confidence 345677888888888888888886 56766653 4444 3332 2345678888888888654443
No 109
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=27.32 E-value=1e+02 Score=27.14 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCchhhHHHHh---------hhhhhhHHHHHHHHHHHHHHhCCCC---c--hhhHHHHHHHHHHHHHHH
Q 018064 274 YVASTMFIGITFPFFGGLLGFF---------GGFAFAPTTYFLPCIIWLAIYKPRK---Y--SLSWCINWICIVLGLCLM 339 (361)
Q Consensus 274 ~~~~~~~iA~~vp~~~~v~~l~---------Ga~~~~~~~filP~l~~~~~~~~~~---~--~~~~~~~~~i~~~g~~~~ 339 (361)
..+.++++|...+.+|..+... ||.+|.-+.++= |..+-+... . ....|+.|+++++|+++.
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHH
Confidence 3444556666666666555543 677776666654 333333321 1 124578889999999998
Q ss_pred HHHhHH--HHHHHHHh
Q 018064 340 ILSPIG--GLRQIILQ 353 (361)
Q Consensus 340 v~gt~~--si~~li~~ 353 (361)
.-|++. .||..-+.
T Consensus 238 lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 238 LRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHhHHHHhhHHHH
Confidence 887755 55555444
No 110
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=27.04 E-value=3.3e+02 Score=27.29 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=35.6
Q ss_pred cHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhc
Q 018064 15 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 65 (361)
Q Consensus 15 sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~ 65 (361)
=|+-++++.-|+ +| ..++++-.+...+....-+-+...+++.-.+...+
T Consensus 176 l~Pllg~~~~G~-~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~g 224 (537)
T COG1292 176 LYPLLGERIKGP-IG-HAVDILAIIATLFGIATSLGLGALQLTAGLSYLFG 224 (537)
T ss_pred hhhhhcccccCc-cc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 456677776676 78 68888888877777777777777777777776654
No 111
>COG4478 Predicted membrane protein [Function unknown]
Probab=25.94 E-value=2.8e+02 Score=23.57 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=38.0
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHH--HHHhCCCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 018064 287 FFGGLLGFFGGFAFAPTTYFLPCIIW--LAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAK 355 (361)
Q Consensus 287 ~~~~v~~l~Ga~~~~~~~filP~l~~--~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~~~ 355 (361)
.+.+|=++.=-+.-..+.+.+|.+-- .+..++|.....+....++.++++..++.+......+....++
T Consensus 83 HFadVk~Lf~lv~~v~i~i~lp~l~~fi~r~ik~~~~s~lk~sli~l~v~pliIGv~~~ligF~~fF~~FH 153 (210)
T COG4478 83 HFADVKNLFHLVQIVAIFILLPFLPLFIYRFIKKRFLSYLKKSLILLLVLPLIIGVAASLIGFDIFFTLFH 153 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34444444444444445555664432 2222333233334556778888888888887777777666544
No 112
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=25.22 E-value=4.9e+02 Score=23.21 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=27.9
Q ss_pred CcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCCCC-chHHHHHHHHHH
Q 018064 179 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEK-PTWLIVMANFFV 231 (361)
Q Consensus 179 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~~~-~~~~~~~~~~~~ 231 (361)
+++.+.+-+.+..++|...-..+...+++.. +.++...|+ -+|+..+.....
T Consensus 26 lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p~wl~wl~~ll~~l~ 78 (251)
T PRK04949 26 LRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLPDWLSWLSYLLWPLA 78 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHHHHH
Confidence 4477888888887777766444444444322 445555553 234434433333
No 113
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=23.50 E-value=3.5e+02 Score=20.85 Aligned_cols=60 Identities=7% Similarity=0.037 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHHHHHHhh---cCchhhHHHHhhhhhhhHHHHHHHHHHHHHHhCCCCch
Q 018064 263 TRLLRFVVRNLYVASTMFIGIT---FPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYS 322 (361)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~iA~~---vp~~~~v~~l~Ga~~~~~~~filP~l~~~~~~~~~~~~ 322 (361)
.+.+++.+.+++.+.-++++.. -..++.=..+..-+..+.+..++=.++++.+..+++.+
T Consensus 15 ~s~k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~ 77 (111)
T COG3125 15 GSLKSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGR 77 (111)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhcccCCcccc
Confidence 3467777777665554444432 13344444444545566777777777777776655444
No 114
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=23.26 E-value=2.4e+02 Score=23.11 Aligned_cols=67 Identities=13% Similarity=0.325 Sum_probs=49.0
Q ss_pred ccCcchhhhHHHHHHHHHHhHhhHHHhhccCcchhhhhhCC-CCchHHHHHHHHHHHHHHHHhhccccccH
Q 018064 177 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQIYAMPV 246 (361)
Q Consensus 177 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 246 (361)
++.+|.+-..+-...++..++|+..-..+.++.+ + .|+ +-.+|+..+.-+++.++-+..+....+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~--~-~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN--I-PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--C-CccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3344677788888888888888888777765532 2 233 33578888888888999999988888886
No 115
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.15 E-value=1.2e+02 Score=19.91 Aligned_cols=28 Identities=11% Similarity=0.322 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHhHhhHHHhhccCcch
Q 018064 183 VVVAYIVVALCYFPVALIGYWMFGNKVE 210 (361)
Q Consensus 183 ~~~a~~~~~~~Y~~~g~~gy~~fG~~~~ 210 (361)
+.+-..+..++|++.|+.=+..+.++..
T Consensus 25 Viik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 25 VIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 4445668889999999988777766543
No 116
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=20.75 E-value=5.1e+02 Score=23.86 Aligned_cols=28 Identities=4% Similarity=-0.122 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 018064 327 INWICIVLGLCLMILSPIGGLRQIILQA 354 (361)
Q Consensus 327 ~~~~i~~~g~~~~v~gt~~si~~li~~~ 354 (361)
....+++.|++.+.+|++.+++...+..
T Consensus 279 ~~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 279 ECLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446678888888888888888877654
No 117
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=20.37 E-value=5.3e+02 Score=21.75 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCC
Q 018064 298 FAFAPTTYFLPCIIWLAIYKPRK 320 (361)
Q Consensus 298 ~~~~~~~filP~l~~~~~~~~~~ 320 (361)
+-.....+.+|+-+.++..+...
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n 83 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLN 83 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCC
Confidence 56677888899877777665543
No 118
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=20.37 E-value=2.1e+02 Score=28.26 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=84.9
Q ss_pred cccccchhhhHHHHhhhhHHHHHH-HhhcchHHHHHhhhcCCCCccch-hhHHHHHHHHHHHHhcCC-CCchhHHHHHHH
Q 018064 27 KLGLYIVVPQQLIVEVGVCIVYMV-TGGKSLHKVHELLCKEPCKEIKL-SYFIMIFASVHFVLSHLP-NFNAIAGVSLAA 103 (361)
Q Consensus 27 ~~g~~~v~~~~~~~~~g~~v~y~i-~~~~~l~~~~~~~~~~~~~~~~~-~~~~~i~~~~~lpl~~~~-~l~~L~~~s~~~ 103 (361)
+.|-.++.+...+.++|..++--. ..|.-+..+.+.+. +.+| .+...+.+.++.|=-+++ +=+.+..+|..+
T Consensus 341 RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi-----nIrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lssys 415 (572)
T KOG2466|consen 341 RAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI-----NIRRGALICAIIAWAICPWNLLSSSSKFLTALSSYS 415 (572)
T ss_pred chhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE-----EecccHHHHHHHHHHhCchHHhccccHHHHHHHHHH
Confidence 466677777777778887766443 33444555544443 2333 345555677788876665 557777777777
Q ss_pred HHHHHHHHHHHHhhh-hhcccCC-Cccccc-cc-cc---cccchhhHHHHHHhHHHHccCccchHhhhhcCCCCCCCCCC
Q 018064 104 AVMSLSYSTIAWSAS-VRKGVQP-DVAYGY-KA-KT---AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 176 (361)
Q Consensus 104 ~~~~~~~~~i~~~~~-~~~~~~~-~~~~~~-~~-~~---~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~ 176 (361)
++..-..-+++.-+. +.++... +.-+.. +. .. ..-+| =.+..+-.++.+++|-+..|..+..+.|+-
T Consensus 416 vfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~Nw------RA~vA~vcG~~P~lpG~a~~V~~~~~v~~G 489 (572)
T KOG2466|consen 416 VFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGINW------RAFVAYVCGMAPNLPGFAGSVGADIKVPDG 489 (572)
T ss_pred HHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecCccH------HHHHHHHhccccCCcchhhhcCcccccccc
Confidence 775433222222222 2233211 000111 01 01 11122 234667778899999999887322233332
Q ss_pred cc--CcchhhhHHHHHHHHHHhHh
Q 018064 177 GP--MWRGVVVAYIVVALCYFPVA 198 (361)
Q Consensus 177 ~~--~~~~~~~a~~~~~~~Y~~~g 198 (361)
.- .......++.+.+..|..+.
T Consensus 490 ~~~~yy~~yf~sf~isf~vYwiLc 513 (572)
T KOG2466|consen 490 AVKLYYLDYFFSFLISFLVYWILC 513 (572)
T ss_pred eEEEEechHHHHHHHHHHHHHHHH
Confidence 21 11224467777777777663
Done!