Query 018064
Match_columns 361
No_of_seqs 119 out of 1111
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.1 2E-09 6.8E-14 103.3 17.2 299 3-320 62-380 (445)
2 4djk_A Probable glutamate/gamm 98.9 1.5E-07 5.3E-12 91.7 21.4 227 14-248 73-314 (511)
3 3gia_A Uncharacterized protein 98.8 1.4E-07 4.9E-12 90.3 18.1 296 3-320 61-370 (444)
4 2jln_A MHP1; hydantoin, transp 97.8 0.003 1E-07 61.2 21.2 228 14-254 88-330 (501)
5 3dh4_A Sodium/glucose cotransp 97.0 0.22 7.7E-06 48.3 23.3 89 11-109 80-169 (530)
6 2xq2_A Sodium/glucose cotransp 95.4 2.2 7.5E-05 41.9 24.0 89 11-109 109-198 (593)
7 2wsw_A BCCT family betaine/car 28.4 3.9E+02 0.013 25.4 10.9 95 12-109 177-273 (509)
8 3tx3_A Uncharacterized protein 24.0 3.3E+02 0.011 23.0 9.7 28 179-206 29-56 (249)
9 4b4a_A TATC, SEC-independent p 18.0 4.4E+02 0.015 22.2 11.8 126 214-341 52-202 (249)
10 4ain_A Glycine betaine transpo 17.5 6.6E+02 0.023 24.0 16.6 49 15-65 181-230 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.11 E-value=2e-09 Score=103.34 Aligned_cols=299 Identities=14% Similarity=0.081 Sum_probs=152.4
Q ss_pred cccccCCCcccccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFAS 82 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (361)
|+....|.. .++-+..++.+||.+| ++..+...+.......++....++.+....+... +++....+.++...
T Consensus 62 el~~~~p~~--Gg~y~~~~~~~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 134 (445)
T 3l1l_A 62 KMSFLDPSP--GGSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVVLW 134 (445)
T ss_dssp HHHHHCCCT--TTHHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHHHH
T ss_pred HHHccCCCC--CCchhhHHhHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHHHH
Confidence 333444443 3667778999999888 7888777777666666666666665554332211 11222222222221
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHh
Q 018064 83 VHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 162 (361)
Q Consensus 83 ~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 162 (361)
.+-....+..|....++.+.....+...+++..........+....+.+ .....++.++..++....|+|.+......
T Consensus 135 -~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~ 212 (445)
T 3l1l_A 135 -IFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASV 212 (445)
T ss_dssp -HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHH
T ss_pred -HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2222223455666666555544333322222222222211111100110 11112356788899999999999999999
Q ss_pred hhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcch----hhh---hhCCCCchHHHHHHHHHHHHHH
Q 018064 163 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DNI---LLSLEKPTWLIVMANFFVVVHV 235 (361)
Q Consensus 163 i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~----~~i---l~n~~~~~~~~~~~~~~~~i~~ 235 (361)
..+|+ |||+|. .+|++..+..++.++|...........+.+.. ++. .++.. +++...+..+...+..
T Consensus 213 ~~~e~----k~p~r~-ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~ 286 (445)
T 3l1l_A 213 AAGVV----KNPKRN-VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGC 286 (445)
T ss_dssp GGGGB----SSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHH
T ss_pred HHHHh----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999 788654 56999999999999999988877766654321 111 11111 1234444455555555
Q ss_pred HHhhccccccHHHHHHHHHhhhc-----CC--CcchhhHHHHHHHHHHHHHHHHhh--cC----chhhHHHHhhhhhhhH
Q 018064 236 IGSYQIYAMPVFDMIETLLVKKL-----NF--SPTRLLRFVVRNLYVASTMFIGIT--FP----FFGGLLGFFGGFAFAP 302 (361)
Q Consensus 236 ~~s~pl~~~p~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~iA~~--vp----~~~~v~~l~Ga~~~~~ 302 (361)
+.+.--......+.+...-+.+. .+ +++.+.+-..-... ++.++... .| .++.+.++.+ .+..
T Consensus 287 ~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 362 (445)
T 3l1l_A 287 LGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGI--LMTIFQLSSISPNATKEFGLVSSVSV--IFTL 362 (445)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHH--HHHHHHHSTTSHHHHCCCHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHH--HHHHHHHHHHcccHHHHHHHHHHHHH--HHHH
Confidence 44443333444443333222110 00 11112222211111 12222222 23 2455555543 3457
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 018064 303 TTYFLPCIIWLAIYKPRK 320 (361)
Q Consensus 303 ~~filP~l~~~~~~~~~~ 320 (361)
+.|.++++.+++.+|+++
T Consensus 363 ~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 363 VPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHhhcCc
Confidence 899999999999987664
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.90 E-value=1.5e-07 Score=91.75 Aligned_cols=227 Identities=8% Similarity=0.035 Sum_probs=115.1
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 93 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l 93 (361)
...-.-+++.+||++| ++..+...+.......++....++.+...... .+-+...+....+.++...+. -+...+..
T Consensus 73 GG~y~~~~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~-~~in~~g~ 149 (511)
T 4djk_A 73 GGVFAWVSNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKW-PALNEDPITKTIAALIILWAL-ALTQFGGT 149 (511)
T ss_dssp -CHHHHHHHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC-GGGTSCSSHHHHHHHHHHHHH-HHHHHTCS
T ss_pred CChhhhHHhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccccCcHHHHHHHHHHHHHH-HHHHHhCh
Confidence 3666788899999888 77777776666665556655555544322100 000011222222222222222 22233445
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHhhhh---hcccCCCccccccccccccchhhHHHHHHhHHHHccCccchHhhhhcCCC
Q 018064 94 NAIAGVSLAAAVMS-LSYSTIAWSASV---RKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 169 (361)
Q Consensus 94 ~~L~~~s~~~~~~~-~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 169 (361)
|....+..+..... +..+++++...+ ..+.+.+.+.+.+...+.....+...++....|+|.+........+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~-- 227 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM-- 227 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc--
Confidence 55555554433221 111111111111 111111111111111111111234456788899999999999999999
Q ss_pred CCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcch---h-------hhhhCCC-CchHHHHHHHHHHHHHHHHh
Q 018064 170 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE---D-------NILLSLE-KPTWLIVMANFFVVVHVIGS 238 (361)
Q Consensus 170 ~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~---~-------~il~n~~-~~~~~~~~~~~~~~i~~~~s 238 (361)
|||+|. ..|++..+..++.++|.+..+......+++.. + ....+.. ...+...+..+...++.+.+
T Consensus 228 --k~P~k~-ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (511)
T 4djk_A 228 --SNPGRD-YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAE 304 (511)
T ss_dssp --SCCTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHH
T ss_pred --cCcccc-hhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHH
Confidence 888764 56999999999999999988877766664321 1 1122222 02355555666666665555
Q ss_pred hccccccHHH
Q 018064 239 YQIYAMPVFD 248 (361)
Q Consensus 239 ~pl~~~p~~~ 248 (361)
.--......+
T Consensus 305 ~~~~~~~~sR 314 (511)
T 4djk_A 305 IASWIVGPSR 314 (511)
T ss_dssp HHHHTTHHHH
T ss_pred HHHHHHHHHH
Confidence 4333333333
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.83 E-value=1.4e-07 Score=90.31 Aligned_cols=296 Identities=10% Similarity=0.055 Sum_probs=148.6
Q ss_pred cccccCCCcccccHHHHHHHhcCccc-cccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHH
Q 018064 3 EMHEMVPGKRFDRYHELGQHAFGEKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFA 81 (361)
Q Consensus 3 ~~~~~~~~~~~~sy~~l~~~~~G~~~-g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (361)
|+....|.. ...-+.+++.+|+++ + ..+.+...+........+....++.+....+. ..+++....+.++.
T Consensus 61 el~~~~P~~--Gg~y~~~~~~~G~~~~~-g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~- 132 (444)
T 3gia_A 61 KLGAKIVSN--AGPIAFIHKAIGDNIIT-GALSILLWMSYVISIALFAKGFAGYFLPLINA----PINTFNIAITEIGI- 132 (444)
T ss_dssp HHHTTCCCT--TTHHHHHHHHHCSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHH-
T ss_pred HHHhhCCCC--CcHHHhHHHHhCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHH-
Confidence 444444443 356788899999863 2 22344444444445555666666665544321 11111111111111
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCccccccccccccchhhHHHHHHhHHHHccCccchH
Q 018064 82 SVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVL 161 (361)
Q Consensus 82 ~~~lpl~~~~~l~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~ 161 (361)
.+.+-....+..|....+........+...+++.+....... ++ +.. ....+..+.++..++....|+|.+.....
T Consensus 133 ~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~-~~-~~~--~~~~~~g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 133 VAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIH-PS-YVI--PDLAPSAVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-GG-GTS--CCCSHHHHHHHHHHHHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hh-hcC--CCCCCcchHHHHHHHHHHHHHHHhHHHHH
Confidence 122222333455666666555544333322222222222211 11 111 11223345678888999999999999999
Q ss_pred hhhhcCCCCCCCCCCccCcchhhhHHHHHHHHHHhHhhHHHhhccCcch----h-hhhhCCC--CchHHHHHHHHHHHHH
Q 018064 162 EIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----D-NILLSLE--KPTWLIVMANFFVVVH 234 (361)
Q Consensus 162 ~i~~~m~~~~~~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~----~-~il~n~~--~~~~~~~~~~~~~~i~ 234 (361)
...+|+ |||+|. .+|++..+..++.++|...........+.+.- + +..+... .+++...+..+...+.
T Consensus 209 ~~~~e~----k~P~r~-ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 283 (444)
T 3gia_A 209 NASEHI----ENPKKN-VPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFS 283 (444)
T ss_dssp TTGGGB----SSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc----cCcccc-hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999 788653 56999999999999999887766655543210 1 1110000 0123333444444444
Q ss_pred HHHhhccccccHHHHHHHHHhhhc------CCCcchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHhhhhhhhHHHHHHH
Q 018064 235 VIGSYQIYAMPVFDMIETLLVKKL------NFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLP 308 (361)
Q Consensus 235 ~~~s~pl~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~~~filP 308 (361)
.+.+.--......+.+...-+.+. +.+++.+.+-. .+...++.+++. ..+++.+.++.+ .+..+.|.++
T Consensus 284 ~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~--~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~ 358 (444)
T 3gia_A 284 ISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGL--YITSALGVLFAL-LFNMEGVASITS--AVFMVIYLFV 358 (444)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHH--HHHHHHHHHHHH-HSCHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHH--HHHHHHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHH
Confidence 444444334444444333322110 00111111111 111122222222 346777777744 3457889999
Q ss_pred HHHHHHHhCCCC
Q 018064 309 CIIWLAIYKPRK 320 (361)
Q Consensus 309 ~l~~~~~~~~~~ 320 (361)
.+.+++.+|+++
T Consensus 359 ~~~~~~~r~~~~ 370 (444)
T 3gia_A 359 ILSHYILIDEVG 370 (444)
T ss_dssp HHHHHHTHHHHC
T ss_pred HHHHHHhhhcCC
Confidence 988888776543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.79 E-value=0.003 Score=61.25 Aligned_cols=228 Identities=10% Similarity=0.049 Sum_probs=116.5
Q ss_pred ccHHHHHHHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcCCCC
Q 018064 14 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 93 (361)
Q Consensus 14 ~sy~~l~~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~~~l 93 (361)
.+|.++.|..||++. ..+..+...+.++|....-....++.+..+.+...+. .+.....+++.++.+++.+. .+
T Consensus 88 l~~~v~~R~~FG~~G-s~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~----~~~~v~~~i~~~l~~~~~~~-G~ 161 (501)
T 2jln_A 88 INFTVAARMPFGIRG-SLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF----TNLPLWIVIFGAIQVVTTFY-GI 161 (501)
T ss_dssp CCHHHHTTTTSCTTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHTT-HH
T ss_pred CChhhhhHhhcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHh-CH
Confidence 369999999999854 4788888889999999888888899998887654321 11234555666666777644 56
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhcccCC-CccccccccccccchhhHHHHHHhH-HHHccCccchHhhhhcCCCCC
Q 018064 94 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDV-AFAYAGHNVVLEIQATIPSTP 171 (361)
Q Consensus 94 ~~L~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~~i~~~m~~~~ 171 (361)
+.++++..++....+...+...+..+.+.... +...+. ........+..++... .+.-....+.++..+.+
T Consensus 162 ~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~---~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~---- 234 (501)
T 2jln_A 162 TFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSM---GGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC---- 234 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTC---CCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhcc---CCccchHHHHHHHHHHHHHHHHHHhccCcccccC----
Confidence 77777777665544333332222222221110 000010 0011123344443331 22223336678888888
Q ss_pred CCCCC---ccCc----chhh---hHHHHHHHHHHhHhhHHHhhccCcchhhhhhC-CCCchHHHHHHH-HHHHHHHHHhh
Q 018064 172 EKPSK---GPMW----RGVV---VAYIVVALCYFPVALIGYWMFGNKVEDNILLS-LEKPTWLIVMAN-FFVVVHVIGSY 239 (361)
Q Consensus 172 ~~p~~---~~~~----~~~~---~a~~~~~~~Y~~~g~~gy~~fG~~~~~~il~n-~~~~~~~~~~~~-~~~~i~~~~s~ 239 (361)
|++++ +++. ++.. .+..+...+...+|.......+...+..++.. ++.+.....++- +...++.+.+-
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn 314 (501)
T 2jln_A 235 KVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTN 314 (501)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTH
T ss_pred CCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 44443 0000 1222 34444444555555543333332222233333 222222123343 44555554444
Q ss_pred cc-ccccHHHHHHHHH
Q 018064 240 QI-YAMPVFDMIETLL 254 (361)
Q Consensus 240 pl-~~~p~~~~~~~~~ 254 (361)
-. +.++....+.+..
T Consensus 315 ~~~n~ys~~~~l~~~~ 330 (501)
T 2jln_A 315 PAANLLSPAYTLCSTF 330 (501)
T ss_dssp HHHHTHHHHHHHHHHS
T ss_pred HHhhHHHHHHHHHHhC
Confidence 43 5666666666664
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.96 E-value=0.22 Score=48.35 Aligned_cols=89 Identities=20% Similarity=0.179 Sum_probs=46.0
Q ss_pred cccccHHHHHHHhcCccccccchhhhHHHH-hhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhc
Q 018064 11 KRFDRYHELGQHAFGEKLGLYIVVPQQLIV-EVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH 89 (361)
Q Consensus 11 ~~~~sy~~l~~~~~G~~~g~~~v~~~~~~~-~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~ 89 (361)
.+..|..|.-++-||++. |.+..+...+. .+..+.+-+...+..+ +... .++...-+++..++..--+.
T Consensus 80 ~~~~T~~e~l~~Rfg~~~-~~~~a~~~l~~~~~~~~~~~l~~~~~~~----~~~~-----Gi~~~~~i~i~~~i~~~Yt~ 149 (530)
T 3dh4_A 80 KGIYTIPEFVEKRFNKKL-KTILAVFWISLYIFVNLTSVLYLGGLAL----ETIL-----GIPLMYSILGLALFALVYSI 149 (530)
T ss_dssp TTCCSHHHHHHHHTCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHH----HHHT-----TCCHHHHHHHHHHHHHHTTC
T ss_pred cCCccHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-----CCCHHHHHHHHHHHHHHHHH
Confidence 355699999999999865 35555443322 2211222222222223 2222 24444455556666677778
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q 018064 90 LPNFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 90 ~~~l~~L~~~s~~~~~~~~~ 109 (361)
.--++...++..+-...++.
T Consensus 150 ~GGl~aV~~TD~iQ~~im~~ 169 (530)
T 3dh4_A 150 YGGLSAVVWTDVIQVFFLVL 169 (530)
T ss_dssp ------CCSHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHH
Confidence 88888888888877776544
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=95.45 E-value=2.2 Score=41.93 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=47.1
Q ss_pred cccccHHHHHHHhcCccccccchhhhHHH-HhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhc
Q 018064 11 KRFDRYHELGQHAFGEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH 89 (361)
Q Consensus 11 ~~~~sy~~l~~~~~G~~~g~~~v~~~~~~-~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~ 89 (361)
.+..|..|.-++-||++.+ .+..+...+ ..+.....-+...+..++.+ . .++...-+++..++..-.+.
T Consensus 109 ~~~~T~~e~l~~Rfg~~~~-~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~----~-----Gi~~~~~i~i~~~i~~~Yt~ 178 (593)
T 2xq2_A 109 KGIYTIPEFVEKRFNKKLK-TILAVFWISLYIFVNLTSVLYLGGLALETI----L-----GIPLMYSILGLALFALVYSI 178 (593)
T ss_dssp TTCCSHHHHHHHHTCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----H-----CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-----CccHHHHHHHHHHHHHHHHH
Confidence 3456999999999998653 555443332 22222222222233333333 2 23444445555566667777
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q 018064 90 LPNFNAIAGVSLAAAVMSLS 109 (361)
Q Consensus 90 ~~~l~~L~~~s~~~~~~~~~ 109 (361)
.--++...++-.+-....+.
T Consensus 179 ~GGl~av~~TD~iQ~iiml~ 198 (593)
T 2xq2_A 179 YGGLSAVVWTDVIQVFFLVL 198 (593)
T ss_dssp TTC---CCHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHH
Confidence 77888887777776665443
No 7
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=28.36 E-value=3.9e+02 Score=25.35 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=50.4
Q ss_pred ccccHHHHH-HHhcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhcC
Q 018064 12 RFDRYHELG-QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 90 (361)
Q Consensus 12 ~~~sy~~l~-~~~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~ 90 (361)
|..=|+-++ ++..|+ .|+ +++++-.+...+....-+-+...+++.-+++..+-+. .......+++...++.-+|-.
T Consensus 177 ss~l~PllG~~r~~G~-~G~-~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~-~~~~qi~ii~vit~~~~~Sa~ 253 (509)
T 2wsw_A 177 SSTLVPLVGEKHVNGL-FGT-VVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPH-TLQLDAIIISCWILLNAICVA 253 (509)
T ss_dssp GGGCHHHHHHHHHHSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhcCCcccCCc-hhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-ccHHHHHHHHHHHHHHHHHHH
Confidence 334577788 788886 784 6666555554444444444444555555555543221 111122222223344555666
Q ss_pred CCC-chhHHHHHHHHHHHHH
Q 018064 91 PNF-NAIAGVSLAAAVMSLS 109 (361)
Q Consensus 91 ~~l-~~L~~~s~~~~~~~~~ 109 (361)
.-+ |-.+++|-......+.
T Consensus 254 sGl~kGIk~LS~~N~~la~~ 273 (509)
T 2wsw_A 254 FGLQKGVKIASDVRTYLSFL 273 (509)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 666 6777777766664443
No 8
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=24.02 E-value=3.3e+02 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=16.9
Q ss_pred CcchhhhHHHHHHHHHHhHhhHHHhhcc
Q 018064 179 MWRGVVVAYIVVALCYFPVALIGYWMFG 206 (361)
Q Consensus 179 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG 206 (361)
+++.+.....+..++|...........+
T Consensus 29 lr~~vl~Pllinl~L~~~~~~~~~~~~~ 56 (249)
T 3tx3_A 29 LRRYVVVPILTNLILFSLAFTWLYGEVD 56 (249)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777887777776655444333333
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=17.99 E-value=4.4e+02 Score=22.20 Aligned_cols=126 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred hhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhhc--------
Q 018064 214 LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITF-------- 285 (361)
Q Consensus 214 l~n~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~v-------- 285 (361)
+.+.+..+....-.++....+++.+.|...+..-..+...+.++.+ +...........+...-...+..+
T Consensus 52 li~t~~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Er--r~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~F 129 (249)
T 4b4a_A 52 LITLSPTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEK--RAFIPLLLGSILLFMLGALFAYFIVLPLALKF 129 (249)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCT--TTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred eeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------C--chhhHHHHhhhhhhhH-HHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHHHHHH
Q 018064 286 ------------P--FFGGLLGFFGGFAFAP-TTYFLPCIIWLAIYKPRKYSL--SWCINWICIVLGLCLMIL 341 (361)
Q Consensus 286 ------------p--~~~~v~~l~Ga~~~~~-~~filP~l~~~~~~~~~~~~~--~~~~~~~i~~~g~~~~v~ 341 (361)
| ++++.++++-.+.-.. ++|-+|.+..+-.+-+--... ++...++++..-++..++
T Consensus 130 l~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAii 202 (249)
T 4b4a_A 130 LLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAII 202 (249)
T ss_dssp TTCSSSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHH
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=17.48 E-value=6.6e+02 Score=23.97 Aligned_cols=49 Identities=16% Similarity=0.023 Sum_probs=31.6
Q ss_pred cHHHHHHH-hcCccccccchhhhHHHHhhhhHHHHHHHhhcchHHHHHhhhc
Q 018064 15 RYHELGQH-AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 65 (361)
Q Consensus 15 sy~~l~~~-~~G~~~g~~~v~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~ 65 (361)
=|+=++++ ..|+ .| .+++++-.+...+....-+-+...+++.-+++..+
T Consensus 181 l~PllG~r~~~G~-~G-~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfG 230 (539)
T 4ain_A 181 FVPLIGEKGAEGW-LG-KLIDILAIIATVFGTACSLGLGALQIGAGLSAANI 230 (539)
T ss_dssp GHHHHHHHHTTSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhcCCCccCCc-ch-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 46777777 6786 78 47777766666555555566666666666666553
Done!