BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018065
(361 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/360 (55%), Positives = 255/360 (70%), Gaps = 34/360 (9%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEAGR LLSS PSFP+RT +K+SL+SS VL+ EQ+ PAV+S+PT+S A+HFP
Sbjct: 1 MEAGRTLLSSSPSFPTRTHLKNSLTSS--------VLILREQATPAVSSIPTTSTAQHFP 52
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDE+RPL ++FKED+ SQAT D R E E K+S +LDQLV++ E+Q
Sbjct: 53 TSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQL 112
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
HWP WNL T++ +D EP + + LA++ALSASK AA L
Sbjct: 113 HHWPAYWNL----------------------TDKLIDVEPTNVINLAKRALSASKHAAFL 150
Query: 181 AENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 240
A+N + +++ TSS + LEEVK R L R+S R+ K + ETY+S+
Sbjct: 151 ADN----NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKS 206
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A ++K+LS+GFD NDPLRLFLWGPET++LLTA EEFELIAQIQDL+ LE K++L+SQFG
Sbjct: 207 ADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFG 266
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
REPTL+EWA+A+GLSC LK +LHSGN SREKLINANLR+VVH+AK+YQ RG+ L DLLQ
Sbjct: 267 REPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQ 326
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/366 (56%), Positives = 259/366 (70%), Gaps = 20/366 (5%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEAG N+LSS PSFP RT + +SSSSVLM ++Q APAVAS+PT+ +AR FP
Sbjct: 1 MEAGTNILSSTPSFPPRTHFR---------NSSSSVLMLHDQVAPAVASIPTT-IARKFP 50
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDEYRP K+++T QAT + R +E +E+NS D +Q + + E Q
Sbjct: 51 TSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI-VVSADEENSDDHNQYMVNFERQL 109
Query: 121 LHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 179
L P LW P + GE P S M+S++ D E S+D +P D +ALA+KALSASK+A S
Sbjct: 110 LLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVS 169
Query: 180 LAENPKLNGAEFTD-----ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234
L EN KL GA+ D + SS PLEE K R LERRSKKR+ P+V HE
Sbjct: 170 LYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKRR--NPKVAVHE 226
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+ SR+A V++K++EG+D DPLRLFLWGPETRKLLTA EE ELI QIQ+L+RLE+ K +
Sbjct: 227 NHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKR 286
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
LQS REPT++EWA+A+GLSC+ L+S+LHSGN SR+KLI ANLR+VVH+AKQYQGRG++
Sbjct: 287 LQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLN 346
Query: 355 LHDLLQ 360
L DLLQ
Sbjct: 347 LQDLLQ 352
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 259/368 (70%), Gaps = 13/368 (3%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSS--VLMHNEQSAPAVASVPTSSVARH 58
MEAG N+LSS PSFP RT ++S SS + VLM ++Q APAVAS+PT+ +AR
Sbjct: 1 MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARK 59
Query: 59 FPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEH 118
FPTSVLLQEQRDEYRP K+++T QAT + R +E +E+NS D +Q + + E
Sbjct: 60 FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI-VVSADEENSDDHNQYMVNFER 118
Query: 119 QFLHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 177
Q L P LW P + GE P S M+S++ D E S+D +P D +ALA+KALSASK+A
Sbjct: 119 QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 178
Query: 178 ASLAENPKLNGAEFTD-----ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SL EN KL GA+ D + SS PLEE K R LERRSKKR+ P+V
Sbjct: 179 VSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKRR--NPKVAV 235
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
HE + SR+A V++K++EG+D DPLRLFLWGPETRKLLTA EE ELI QIQ+L+RLE+ K
Sbjct: 236 HENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVK 295
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+LQS REPT++EWA+A+GLSC+ L+S+LHSGN SR+KLI ANLR+VVH+AKQYQGRG
Sbjct: 296 KRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRG 355
Query: 353 ISLHDLLQ 360
++L DLLQ
Sbjct: 356 LNLQDLLQ 363
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 201/366 (54%), Positives = 252/366 (68%), Gaps = 33/366 (9%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R LSSPP FPSRT K+SLSSS + + ++H EQ+ PAV S PT+S+AR+FP
Sbjct: 1 METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLH-EQAVPAVTSAPTTSIARNFP 59
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDE+RPLL++FKEDKT QAT D++ ++ E S LDQL+ H
Sbjct: 60 TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQLIL---HSN 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
L W SLTMQS++ +T+E + EP + + LARKALSASKEAA L
Sbjct: 117 LSW------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALL 158
Query: 181 AE------NPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234
A+ + G E TD+S + LEEVK R LER+SK R+V+K + HE
Sbjct: 159 AQKCANLDDTVSTGLEPTDLS-----NFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHE 213
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
Y+SR+A V+KK++EGFD DPLRLFLWGPET++LLTA EE ELI Q+QDL+ LE K K
Sbjct: 214 PYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEK 273
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
+ QFGR+PTL+EWA A+GLS ++S+LHSGN SREKLINANLR+VVH+AKQYQGRG+S
Sbjct: 274 FKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLS 333
Query: 355 LHDLLQ 360
L DLLQ
Sbjct: 334 LQDLLQ 339
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 194/368 (52%), Positives = 251/368 (68%), Gaps = 14/368 (3%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H S+ SSSS+SSVLM +EQ++P VAS ++ A++FP
Sbjct: 1 MEFARTMFCSSPPFPPRTH--HPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFP 58
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLL EQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 59 ASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVH-EENNTENADQVVLDFRKHL 117
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
HWP+L S + GE + S T++ +S D E + F+ V+LA+KALS SK+ +S+
Sbjct: 118 HHWPNLQLTSSQI--GE-VAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSV 174
Query: 181 AENPKLNGAEFTDISLTS-SLGYP-LEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNS 238
E+ K A+ SL S SL P + K R LERRSK+RKV K +V + ETY +
Sbjct: 175 VEDLKSIKADDVPFSLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 234
Query: 239 RKASVKKKL------SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
RK ++KL +E D++DPLRLFLWGPET++LLT ++E +LI+QIQDL+RLE+ K
Sbjct: 235 RKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVK 294
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+ LQSQFGREPT+ EWA+ GL+CR L+S+LHSGN SREKLI ANLR+VVHVAK YQGRG
Sbjct: 295 TNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRG 354
Query: 353 ISLHDLLQ 360
+SL DLLQ
Sbjct: 355 LSLQDLLQ 362
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 186/370 (50%), Positives = 245/370 (66%), Gaps = 15/370 (4%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H ++ SSS+SVLM EQ++P VAS ++ A++FP
Sbjct: 1 MEFSRTMFCSSPPFPPRT---HHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFP 57
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLLQEQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 58 ASVLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VMVHEENNTENADQVVLDFRKHL 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
+WP L NL + GE S S T+Q +S+D + + + V+LA+KALS SK+ +S+
Sbjct: 117 HYWPHLQNLLASSQTGE-ISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSV 175
Query: 181 AENPKLNGAEFTDISL---TSSLGYP-LEEVKQFSQPRFLERRSKKRKVSKPQVTNHETY 236
E+ K A+ I ++ L P + K R LERRSK+RKV K +V + ETY
Sbjct: 176 VEDLKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETY 235
Query: 237 NSRK------ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
+RK V+KK +E D+NDPL FL GPET++LLT ++E +LI+QIQDL+RLE+
Sbjct: 236 LARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEE 295
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
K+KLQSQFGREPT+ EWA+ +GL+CR L ++L SG+ SREKLI ANLR+VVHVAK YQG
Sbjct: 296 VKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQG 355
Query: 351 RGISLHDLLQ 360
RG+SL DLLQ
Sbjct: 356 RGLSLQDLLQ 365
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 235/368 (63%), Gaps = 21/368 (5%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSS-------VLMHNEQSAPAVASVPTS 53
MEAG NLLSS F SR + L+ S SS++S S V M EQ++PA
Sbjct: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPA------- 53
Query: 54 SVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV 113
R+F TS L QEQ E RP + K+D++SQ T + R IE + ++E + D D L+
Sbjct: 54 ---RYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIE-RSVPIDEGSRDDHDHLI 109
Query: 114 QDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
+L+HQ + WP L + PP++ E S+ +S + E V EP + +ALA+KALSA
Sbjct: 110 WELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSA 169
Query: 174 SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNH 233
SK+AA L + +L G SL SL +E + R +RRSKKRKV K T
Sbjct: 170 SKQAALLVDETELVGTSLDYSSLDDSLS---KEGRTVRSTRLQDRRSKKRKVPKHVTTID 226
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E N R ++K SE FD NDPLRLFLWGPET+KLLTA EE ELI QIQDL+ L+ K+
Sbjct: 227 EISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKA 286
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+LQSQF REPTL+EWA+A+G++C+ L+S+LH +SREKLINANLR+VVH+AKQYQGRG+
Sbjct: 287 RLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGL 346
Query: 354 SLHDLLQI 361
SLHDLLQ+
Sbjct: 347 SLHDLLQV 354
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 177/368 (48%), Positives = 225/368 (61%), Gaps = 38/368 (10%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K S SS SS V++H + + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E +PL H +ED+TSQ T + R D+LV +
Sbjct: 56 ASVLSQELREESKPLSHALREDRTSQLTLERRQ---------------FDELVSSREDEK 100
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P+V S DA+ D VALA+KALSA
Sbjct: 101 FEQQLLHSAGLWNLLISPLTTEKQLPAV----------VSPSADADLCDLVALAQKALSA 150
Query: 174 SKEAASLAENPKLNGAEF-TDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SK+AA L EN + + + D TSS E+ R LERR+K R+ K +
Sbjct: 151 SKQAALLVENSEADPPDNPRDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMD 210
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E Y +K + KKK+ +GFD +D L+LFLWGPET++LLTA EE ELIA IQ LI+LEK K
Sbjct: 211 SEGYVPQKINAKKKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVK 270
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+GLS LKSE+H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 271 TKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRG 330
Query: 353 ISLHDLLQ 360
++ DLLQ
Sbjct: 331 LNFQDLLQ 338
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 175/368 (47%), Positives = 229/368 (62%), Gaps = 39/368 (10%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K + SS SS V++H + + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK------SYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFP 54
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E RPL H +ED+TSQ T + R D+LV +
Sbjct: 55 ASVLSQEPREESRPLSHALREDRTSQLTLERRQ---------------FDELVSSREDEK 99
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P V + DAE D VALA+KALSA
Sbjct: 100 FEQQLLHSAGLWNLLISPLTAETKLPPVVPPL----------ADAELCDIVALAQKALSA 149
Query: 174 SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQ-PRFLERRSKKRKVSKPQVTN 232
SK+AA LA++ + N ++ T SL++S L E + R LERR+K R+ K +
Sbjct: 150 SKQAALLADDTEANPSDNTRGSLSTSSSMSLPEKGAIVRSKRQLERRAKNRRAPKSNDVD 209
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
+E Y +K + KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K
Sbjct: 210 NEGYVPQKINAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 269
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+G+S DLKSE+H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 270 TKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRG 329
Query: 353 ISLHDLLQ 360
++ DLLQ
Sbjct: 330 LNFQDLLQ 337
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 172/368 (46%), Positives = 226/368 (61%), Gaps = 38/368 (10%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K S+ SS SS V++H++ + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E RPL H ++D+TSQ T + R D+LV +
Sbjct: 56 ASVLSQEPREESRPLSHALRDDRTSQLTLERRQ---------------FDELVSSREDEK 100
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P+V + DAE D VALA+KALSA
Sbjct: 101 FEQQLLHSTGLWNLLISPLTSETKLPAVVSPL----------ADAELCDVVALAQKALSA 150
Query: 174 SKEAASLAENPKLNGAE-FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SK+AA L ++ + N ++ D TSS E+ R LERR+K R+ K +
Sbjct: 151 SKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVD 210
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E Y +K S KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K
Sbjct: 211 DEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 270
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+G+S LKS++H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 271 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 330
Query: 353 ISLHDLLQ 360
++ DLLQ
Sbjct: 331 LNFQDLLQ 338
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 163/374 (43%), Positives = 233/374 (62%), Gaps = 30/374 (8%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME+ R + S P P RT ++L SS S +SVLM EQ AP V + TS +++FP
Sbjct: 1 MESARTMFCSSPLCPPRTHHWNTLPSS----SYTSVLMLREQVAPTVTAWCTSYSSQNFP 56
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKN-SGDLDQLVQDLEHQ 119
TSVLLQEQ DEYRPLLH+ K+DKT QAT ++R ++ + V+EKN + + DQ+ +D
Sbjct: 57 TSVLLQEQCDEYRPLLHISKKDKTCQATLNTRQMDMVS--VQEKNDTSNTDQVARDFRQH 114
Query: 120 FLHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178
P L NL + GE D S +L + D+ +AV+L+++A S +++
Sbjct: 115 LHLLPRLENLLTSSQTGEMDGSSTL----------QHADSLQCNAVSLSKQAASVAEDLI 164
Query: 179 SL-AENPKLNGAEF-----TDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
S+ A+ N F + ++ +SS L K R ERR+K+RKV K +V +
Sbjct: 165 SIKADEDADNSIPFGLVPPSCLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPKLKVKD 224
Query: 233 HETY------NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
ETY K V+KK+S+G +++DPL FL PE+++LLT+++E +L+ QIQ+L+
Sbjct: 225 KETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELL 284
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
RLE K+ LQSQFGREPT+ EWA+ GL+CR +K++L GN SREKLI ANLRLV ++AK
Sbjct: 285 RLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAK 344
Query: 347 QYQGRGISLHDLLQ 360
YQGRG+S+ DLLQ
Sbjct: 345 SYQGRGLSIEDLLQ 358
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 169/348 (48%), Positives = 222/348 (63%), Gaps = 34/348 (9%)
Query: 33 SSSVLMH-NEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKED-KTSQATSD 90
S SV+M ++Q+APA++S PT+ FPTSVLLQE RDEY+PLLH ED K QAT +
Sbjct: 15 SPSVMMPPHDQAAPALSSWPTT-----FPTSVLLQEHRDEYKPLLHTCNEDNKPPQATLN 69
Query: 91 SR-----NIETEAFFVEEKNSGDLDQLVQDLEHQF---LHWPDLWNLSPPMKRGEDPSVS 142
+R +I + + G +D V + HQ H +L SP E+ VS
Sbjct: 70 TRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRCHLQNLLASSP-----EEDFVS 124
Query: 143 LTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTD---ISLT-S 198
+ S S+ T D +DA+ LA++ALSASK+AA++A+ KL + D + L S
Sbjct: 125 SSSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKLVKIDDDDSLPLGLADS 184
Query: 199 SLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVK------KKLSEGFD 252
SLG + K R ERRSK+RKVS +V + E Y ++K++V+ KKL EG D
Sbjct: 185 SLG----KNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQRRLRLEKKLKEGLD 240
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
N LRLFLW PET++LL+ +EE +LIAQIQDL +L++ K KLQS FGREPTL EWA +
Sbjct: 241 GNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGV 300
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GLSCRDL+ LH GN S++KLI+ANLRLVVH+AK YQGRG+SL DLLQ
Sbjct: 301 GLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQ 348
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 182/303 (60%), Gaps = 33/303 (10%)
Query: 66 QEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QDLEHQF 120
QE R+E RPL H ++D+TSQ T + R D+LV + E Q
Sbjct: 1 QEPREESRPLSHALRDDRTSQLTLERRQ---------------FDELVSSREDEKFEQQL 45
Query: 121 LHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178
LH LWNL SP + P+V + DAE D VALA+KALSASK+AA
Sbjct: 46 LHSTGLWNLLISPLTSETKLPAVVSPL----------ADAELCDVVALAQKALSASKQAA 95
Query: 179 SLAENPKLNGAE-FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYN 237
L ++ + N ++ D TSS E+ R LERR+K R+ K + E Y
Sbjct: 96 LLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYV 155
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+K S KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K+KL+S
Sbjct: 156 PQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 215
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
Q G EPT+ EWA+A+G+S LKS++H G SSREKLI ANLRLVVH+AKQYQ RG++ D
Sbjct: 216 QNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 275
Query: 358 LLQ 360
LLQ
Sbjct: 276 LLQ 278
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 123/153 (80%), Gaps = 6/153 (3%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL------SEGFDRNDPLRLFLWGPETR 267
R LERRSK+RKV K +V + ETY +RK ++KL +E D++DPLRLFLWGPET+
Sbjct: 79 RLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHDQDDPLRLFLWGPETK 138
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E +LI+QIQDL+RLE+ K+ LQSQFGREPT+ EWA+ GL+CR L+S+LHSG
Sbjct: 139 QLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGI 198
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
SREKLI ANLR+VVHVAK YQGRG+SL DLLQ
Sbjct: 199 RSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 231
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 85/102 (83%)
Query: 259 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 318
+FLWGPET+KLLT +EE +LI+QIQ+L RLE+ K +LQSQFGREPT+ EWA +GLSC
Sbjct: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+++L SG S+EKLI+ANLR+VVHVAK Y GRG+S DLLQ
Sbjct: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQ 102
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 97/147 (65%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K D ++P RLFL ET + LTA
Sbjct: 187 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAK 246
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 247 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 306
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+N RLV+HVA++Y+G G+ + DL+Q
Sbjct: 307 ARSNFRLVIHVARKYEGCGLDIQDLVQ 333
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 97/147 (65%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K D ++P RLFL ET + LTA
Sbjct: 186 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAK 245
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 246 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 305
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+N RLV+HVA++Y+G G+ + DL+Q
Sbjct: 306 ARSNFRLVIHVARKYEGCGLDIQDLVQ 332
>gi|255628117|gb|ACU14403.1| unknown [Glycine max]
Length = 196
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 5/185 (2%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H ++ SSS+SVLM EQ++P VAS ++ A++FP
Sbjct: 1 MEFSRTMFCSSPPFPPRT---HHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFP 57
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLLQEQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 58 ASVLLQEQRDEYRPLLHMSKEDKTSQAMFSTRQMDT-VMVHEENNTENADQVVLDFRKHL 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
+WP L NL + GE S S T+Q +S+D + + + V+LA+KALS SK+ +S+
Sbjct: 117 HYWPHLQNLLASSQTGE-ISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSV 175
Query: 181 AENPK 185
E+ K
Sbjct: 176 VEDLK 180
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 123/214 (57%), Gaps = 20/214 (9%)
Query: 166 LARKALSASKEAASLAENPKLNGAEFTDISLTS--SLGYPLEEVKQFSQ-----PRFLER 218
L + + KE A L E + AE D++L L + E++ Q R LER
Sbjct: 141 LGATSATVLKEVAFLPEESGTSAAEL-DVTLLHRLDLNHSYEKLLSKGQVFIRSKRLLER 199
Query: 219 RSKKRKVSKPQVTN------------HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPET 266
RSKKR + T+ +++K KK D ++P +LFL PET
Sbjct: 200 RSKKRDAPRASSTDALCGVVSSTDALCGVVDTKKKEKSKKYGRVLDPDEPFKLFLRDPET 259
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
+ LTA EE +L +++Q+L++LE+ + +L++Q GREP + EWAKA+G+SC+DL+S +H G
Sbjct: 260 TEFLTAKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAKAVGMSCKDLQSSIHIG 319
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
REK+ +N RLV+HVA++YQG G+ + DL+Q
Sbjct: 320 RRCREKMARSNFRLVIHVARKYQGYGLDIEDLVQ 353
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 94/147 (63%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K + RLFL ET + LTA
Sbjct: 186 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAK 245
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 246 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 305
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+N RLV+HVA++Y+G G+ + DL+Q
Sbjct: 306 ARSNFRLVIHVARKYEGCGLDIQDLVQ 332
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 82/116 (70%)
Query: 245 KKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
KK +D DP+R +L KLLT+ EE EL IQDL+R+E K+ L+ Q GREPT
Sbjct: 293 KKSQPAYDPQDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPT 352
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+EWAKA+G L+S + SG + +++++N+NLRLVV +AK+YQGRG+++ DL+Q
Sbjct: 353 LMEWAKAVGTERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQ 408
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 216 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 275
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S ++L+S + +G RE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K+ +N RLV+HVA++Y+G G+ + DL+Q
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQ 364
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + ++ VT+ ++ S +S KK+ S + D +DPLR T +LLTA
Sbjct: 226 RQTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTA 285
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL IQDL++LE+ + +L ++G EPT +WA A G++ R L+ L+ G ++K
Sbjct: 286 TEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDK 345
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 346 MIKSNIRLVISIAKNYQGAGMNLQDLVQ 373
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N RK K+ +++ D NDPLR + KLLT EE EL A IQDL++LE+ +++L
Sbjct: 243 NPRK---KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELT 299
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ GR+PT +WA A G+ + L+ +H G ++K+I +N+RLV+ +AK YQG G++L
Sbjct: 300 ERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 359
Query: 357 DLLQ 360
DL+Q
Sbjct: 360 DLVQ 363
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 18/165 (10%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 165 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 224
Query: 272 ADEEFELIAQIQD----------------LIRLEKEKSKLQSQFGREPTLIEWAKAIGLS 315
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S
Sbjct: 225 AKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMS 284
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++L+S + +G REK+ +N RLV+HVA++Y+G G+ + DL+Q
Sbjct: 285 SKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQ 329
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 18/165 (10%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 125 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 184
Query: 272 ADEEFELIAQIQD----------------LIRLEKEKSKLQSQFGREPTLIEWAKAIGLS 315
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S
Sbjct: 185 AKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMS 244
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++L+S + +G REK+ +N RLV+HVA++Y+G G+ + DL+Q
Sbjct: 245 SKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQ 289
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 76/109 (69%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D +DP+R +L KLLTA EE +L QIQDL++LE KS L+ + GR T+ EW++A
Sbjct: 259 DPSDPVRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRA 318
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G+ ++ L G +++K++N+NLRLVV +AK YQGRG++L DL+Q
Sbjct: 319 VGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQ 367
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++K+ + ++ TN ++ +S +K++S + D +DPLR +LLT
Sbjct: 204 RQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTP 263
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE +L A IQDL++LEK + L +FG +PT +WA G+ + L+ L+ G ++K
Sbjct: 264 TEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDK 323
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 324 MIKSNIRLVISIAKNYQGSGMNLQDLVQ 351
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
NSRK K+ + D +DPLR + +LLT+ EE EL A IQDL++LEK +L+
Sbjct: 248 NSRK---KRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELK 304
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+FG+ P+ ++WA A G+ R L+ L+ G ++K+I +N+RLV+ +AK YQG G++L
Sbjct: 305 VRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQ 364
Query: 357 DLLQ 360
DL+Q
Sbjct: 365 DLVQ 368
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 77/107 (71%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R +L + KLL+A EE L +IQD+++LEK +++LQ GREPTL EW++A+
Sbjct: 268 SDPIRSYLRDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVS 327
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L L+ + G S+++KL+N+NLRLVV + K YQGRG++L DL+Q
Sbjct: 328 LDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQ 374
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 5/127 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFL-WGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
T +SRK KK +S +D +RL W + +LLTA EE EL IQDLI+L++ ++
Sbjct: 263 TRSSRKG--KKAISSKGHISDSIRLLRDWS--SSRLLTASEEVELSRGIQDLIKLDRIRA 318
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + + G+EPTL +WA+ IG+ + LK L G S +K+IN NLRLV+ VAK YQ RG+
Sbjct: 319 KYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGL 378
Query: 354 SLHDLLQ 360
SL DL+Q
Sbjct: 379 SLQDLIQ 385
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 5/127 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFL-WGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
T +SRK KK +S +D +RL W +LLTA EE EL IQDLI+L++ ++
Sbjct: 166 TRSSRKG--KKAISSKGHISDSIRLLRDWSSS--RLLTASEEVELSRGIQDLIKLDRIRA 221
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + + G+EPTL +WA+ IG+ + LK L G S +K+IN NLRLV+ VAK YQ RG+
Sbjct: 222 KYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGL 281
Query: 354 SLHDLLQ 360
SL DL+Q
Sbjct: 282 SLQDLIQ 288
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + + ++ + S KK+ S + D +DPLR T +LLTA
Sbjct: 215 RQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTA 274
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ + +L ++G +PT +WA A G+ R L+ ++ G ++K
Sbjct: 275 SEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDK 334
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 335 MIKSNIRLVISIAKNYQGAGMNLQDLVQ 362
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 78/119 (65%), Gaps = 2/119 (1%)
Query: 244 KKKLSEGFDRNDPLRLFLWGPETRKL--LTADEEFELIAQIQDLIRLEKEKSKLQSQFGR 301
K+ +++ D NDPLR + KL LT EE EL A IQDL++LE+ +++L + GR
Sbjct: 247 KRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHELSAGIQDLLKLERLQTELTERSGR 306
Query: 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ + L+ +H G ++K+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 307 QPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 365
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 2/109 (1%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--DLIRLEKEKSKLQSQFGREPTLIEWAKA 311
DP+R +L KLLTA EE L +IQ DL+ LEK KS LQ + GREP++ EW++A
Sbjct: 273 TDPVRAYLRDIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRA 332
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G+ + + G S++K++N+NLRLVV + K YQGRG++L DL+Q
Sbjct: 333 VGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQ 381
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 65/83 (78%)
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINAN 337
+ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+ +N
Sbjct: 1 MFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSN 60
Query: 338 LRLVVHVAKQYQGRGISLHDLLQ 360
RLV+HVA++Y+G G+ + DL+Q
Sbjct: 61 FRLVIHVARKYEGCGLDIQDLVQ 83
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 242 SVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S +K++S + D +DPLR T +LLTA EE EL IQDL++LEK + L+ +FG
Sbjct: 252 SRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFG 311
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ + L+ + G ++K+I +N+RLV+ +AK YQG G+++ DL+Q
Sbjct: 312 VKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQ 371
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 242 SVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S +K++S + D +DPLR T +LLTA EE EL IQDL++LEK + L+ +FG
Sbjct: 249 SRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFG 308
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ + L+ + G ++K+I +N+RLV+ +AK YQG G+++ DL+Q
Sbjct: 309 VKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQ 368
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 73/117 (62%)
Query: 244 KKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 303
K+ S+ D NDPLR + KLLTA EE +L IQDL++LE+ +++L + G +P
Sbjct: 247 KRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQP 306
Query: 304 TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
T +WA A G+ + L+ + G ++++I +N+RLV+ +AK YQG G+ DL+Q
Sbjct: 307 TFSQWASAAGVDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQ 363
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q REP EWA+A+ L
Sbjct: 82 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVEL 141
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 142 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 187
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q REP EWA+A+ L
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQL 142
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 143 PLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 5/137 (3%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
+ S VT + NS++ S KK +E D +RL+L +LL ADEE EL +I
Sbjct: 57 ETSTKAVTATKEENSKEDSKKKSYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIA 111
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
DL+ LE+++++L++ G EPT EWA+ + + + + L G ++EK++ +NLRLVV
Sbjct: 112 DLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFRRRLMLGRRAKEKMVQSNLRLVVS 171
Query: 344 VAKQYQGRGISLHDLLQ 360
+AK+Y RG+S DL+Q
Sbjct: 172 IAKKYMNRGLSFQDLIQ 188
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 13/155 (8%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDDFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q REP EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q
Sbjct: 70 RTQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQ 124
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 125 LEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 184
Query: 359 LQ 360
+Q
Sbjct: 185 IQ 186
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 66 RRAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEE 121
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ ++ + LH G ++EK++ +NLRLVV +AK+Y RG+S DL
Sbjct: 122 YNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDL 181
Query: 359 LQ 360
+Q
Sbjct: 182 IQ 183
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
RKA KKK D +RL+L +LL ADEE EL +I DL+ LE+ ++ L Q
Sbjct: 59 RKAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQ 114
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REPT EWA+ + ++ + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 115 LEREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 174
Query: 359 LQ 360
+Q
Sbjct: 175 IQ 176
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + KL Q R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 66 RRAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEE 121
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ ++ + LH G ++EK++ +NLRLVV +AK+Y RG+S DL
Sbjct: 122 YNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDL 181
Query: 359 LQ 360
+Q
Sbjct: 182 IQ 183
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 72/109 (66%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D++DPLR F + +LL+A EE EL IQDL++LE+ + +L+ +FG +PT +WA A
Sbjct: 249 DQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAA 308
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L+ L+ ++K+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 309 ARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 357
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 228 PQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR 287
P+ T + R KK +E D +RL+L +LL ADEE EL +I DL+
Sbjct: 55 PKATKARSTRRRAQPKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLE 109
Query: 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347
LE+ + L REP EWA A+ +S + LH G +++K++ +NLRLVV +AK+
Sbjct: 110 LERIREHLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKK 169
Query: 348 YQGRGISLHDLLQ 360
Y RG+S DL+Q
Sbjct: 170 YMNRGLSFQDLIQ 182
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + L Q REP EWA+A+ L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + L Q REP EWA+A+ L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L+ +E+ + +L Q
Sbjct: 68 RRAQTKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQ 123
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ LS + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 124 LDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 183
Query: 359 LQ 360
+Q
Sbjct: 184 IQ 185
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 45 EMDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 91
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q R+P EWA+A+ L + LH
Sbjct: 92 RIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHV 151
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 152 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + LQ Q R P EWA A+ +
Sbjct: 72 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNM 131
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 132 TLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 177
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL Q
Sbjct: 67 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQQ 122
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 123 LDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 182
Query: 359 LQ 360
+Q
Sbjct: 183 IQ 184
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 74/109 (67%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D++DPLR F + +LL+A EE EL IQDL++LE+ + +L+ +FG EP+ +WA A
Sbjct: 252 DQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAA 311
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G+ L+ L+ G ++K+I +N+RLV+ +AK YQG G++L DL+Q
Sbjct: 312 AGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQ 360
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q
Sbjct: 68 RTQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQ 122
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ L + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 123 LDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 182
Query: 359 LQ 360
+Q
Sbjct: 183 IQ 184
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL +
Sbjct: 70 RRAQTKKKQYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDR 125
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 126 LDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 185
Query: 359 LQ 360
+Q
Sbjct: 186 IQ 187
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N R+ KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L
Sbjct: 49 NRRRTQSKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 104
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q REP EWA + + + LH G ++EK++ +NLRLVV +AK+Y RG+S
Sbjct: 105 EQLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQ 164
Query: 357 DLLQ 360
DL+Q
Sbjct: 165 DLIQ 168
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 67/106 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ +L Q R+P EWA+A+ L
Sbjct: 79 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQL 138
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 139 PLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 184
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 69 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLCEE 124
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA A+G+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 125 LERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 184
Query: 359 LQ 360
+Q
Sbjct: 185 IQ 186
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + S TN ++ S + KK++ ++ D +DPLR T +LLT
Sbjct: 218 RQTERKARRVRASGKAATNIVSFRSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTT 277
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE + IQDLI+LEK + L + G +PT +WA G+ + L+ L+ G +EK
Sbjct: 278 SEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 337
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I +N+RLV+ VAK YQG G+SL DL+Q
Sbjct: 338 MIKSNIRLVISVAKNYQGSGMSLQDLVQ 365
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 229 QVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL 288
+ T T R S KK +E D +RL+L +LL ADEE EL +I DL+ L
Sbjct: 40 KTTKARTARRRGQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLEL 94
Query: 289 EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQY 348
E+ L + REP L EWA + + + LH+G +++K++ +NLRLVV +AK+Y
Sbjct: 95 ERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKY 154
Query: 349 QGRGISLHDLLQ 360
RG+S DL+Q
Sbjct: 155 MNRGLSFQDLIQ 166
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
++ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 DIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFRYRLHL 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+R A KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +L
Sbjct: 64 TRTAGKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREELIY 118
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
REP + EWA A+ + K L G ++EK++ +NLRLVV +AK+Y RG+S D
Sbjct: 119 HLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQD 178
Query: 358 LLQ 360
L+Q
Sbjct: 179 LIQ 181
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + K+ GR PT +EW++AI +
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINM 128
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L+ G +++K++++NLRLVV +AK+Y RG+S DL+Q
Sbjct: 129 EWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 174
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 68/106 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + +L+ R PT EWA+A G+
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGM 128
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+D + L G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 129 PLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 174
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q
Sbjct: 51 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQ 106
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA + + + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 107 LEREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 166
Query: 359 LQ 360
+Q
Sbjct: 167 IQ 168
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
++ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 DIDEFLEPQTDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L + R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHI 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R A KK +E D +R++L +LL A+EE EL +I DL+ LE+ + KL+
Sbjct: 56 RDAGKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRN 110
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P+ EWA+ +G+ + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 111 LGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 170
Query: 359 LQ 360
+Q
Sbjct: 171 IQ 172
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q REP EWAK + +
Sbjct: 70 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 130 ELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRN----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T SRKA ++ + D +R++L +LL A+EE EL +I DL+ LE+
Sbjct: 41 TKKSRKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELER 100
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+ +L R PT EWA+A G+ +D + L G +++K++ +NLRLVV +AK+Y
Sbjct: 101 MREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMN 160
Query: 351 RGISLHDLLQ 360
RG+S DL+Q
Sbjct: 161 RGLSFQDLIQ 170
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRN----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T SRKA ++ + D +R++L +LL A+EE EL +I DL+ LE+
Sbjct: 57 TKKSRKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELER 116
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+ +L R PT EWA+A G+ +D + L G +++K++ +NLRLVV +AK+Y
Sbjct: 117 MREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMN 176
Query: 351 RGISLHDLLQ 360
RG+S DL+Q
Sbjct: 177 RGLSFQDLIQ 186
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R A KK +E D +R++L +LL A+EE EL +I DL+ LE+ + KL+
Sbjct: 55 RDAGKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P+ EWA+ +G+ + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 169
Query: 359 LQ 360
+Q
Sbjct: 170 IQ 171
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L+++E+ + +L +
Sbjct: 64 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDR 119
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ L + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 120 LDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 179
Query: 359 LQ 360
+Q
Sbjct: 180 IQ 181
>gi|62701715|gb|AAX92788.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
Length = 368
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 236 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 294
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 295 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
Query: 361 I 361
+
Sbjct: 355 V 355
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +L + REP EWA + +
Sbjct: 68 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDM 127
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 128 PLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 173
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRN-DPLRLFLWGPETRKLLTA 272
R E R+++ + + T T S KKK S+G +PL LW R+LLTA
Sbjct: 208 RQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLG-SLWKMTGRRLLTA 266
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE E IQDL++LE +++L G +PT +WA A G+ R L+ L G + +
Sbjct: 267 KEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNR 326
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 327 MVTSNVRLVISIAREFEGPGMELYDLIQ 354
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 15/130 (11%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ---------DLIRLEK 290
K+ +K +LS DP+ +L + KLLTA EE L +IQ ++LEK
Sbjct: 249 KSLIKHRLS------DPICSYLRDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEK 302
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+++LQ GREPT EW+ A+G++ + + G +++KL+N+NLRLVV + K YQG
Sbjct: 303 VRAELQRDMGREPTRSEWSLAVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQG 362
Query: 351 RGISLHDLLQ 360
RG++L DL+Q
Sbjct: 363 RGMTLPDLIQ 372
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 13/155 (8%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L + R+P EWA + L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 185
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 242 SVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR 301
S KKK S+G +PL LW RKLLTA EE EL IQDL++LE + +L G
Sbjct: 225 SSKKKRSKGPSTMNPLG-SLWKMTGRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGG 283
Query: 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 284 QPTFPQWAAAAGTDENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQ 342
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L++LE+ +L++Q
Sbjct: 61 RRAQTKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQ 116
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA A+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 117 LDREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 176
Query: 359 LQ 360
+Q
Sbjct: 177 IQ 178
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 236 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 294
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 295 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 236 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 294
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 295 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 235 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 293
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 294 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 353
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ + ++ Q EPT +WA A+ +
Sbjct: 94 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDM 153
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L+ G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 154 PLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 199
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW RKLLTA EE EL IQDL++LE +++L G +PT +WA A G + L+
Sbjct: 243 LWKLTGRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKTLR 302
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L G S+ +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 303 KRLAHGIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQ 342
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 14/181 (7%)
Query: 183 NPKLNGAEFTDISLTSSLGYPLE--EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 240
N K N EF I+ Y ++ EVK+ + F +R K K+ +P+V + S
Sbjct: 21 NFKKNWLEFNLINNVEKNFYEVKKNEVKKIIKS-FNTQREFKNKIEEPEVAK---FQSET 76
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
V K +D +R +L KLL +EE +L +I L++ E K L+ + G
Sbjct: 77 KPVHKS-------DDSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLG 129
Query: 301 REPTLIEWAKAIGLS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
REPT +EW+ A +S + K+ L++ ++E++I ANLRLVV +AK+Y RG+SL DL+
Sbjct: 130 REPTALEWSAACKISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLV 189
Query: 360 Q 360
Q
Sbjct: 190 Q 190
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E +++ S KK +E D +RL+L +LL ADEE EL +I DL LE+ ++
Sbjct: 61 EATTTKEDSKKKSYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRT 115
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+L++ G EPT EWA+ +G + + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 116 ELEATIGCEPTDEEWAEEVGQALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGL 175
Query: 354 SLHDLLQ 360
S DL+Q
Sbjct: 176 SFQDLIQ 182
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +R++L +LL A+EE EL QI DL+ LE +S L
Sbjct: 64 RGQSKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRSTLIEH 118
Query: 299 FGREPTLIEWAKAIGL-SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
GR PT EWA A + + R LH G +++K++ +NLRLVV +AK+Y RG+S D
Sbjct: 119 LGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 178
Query: 358 LLQ 360
L+Q
Sbjct: 179 LIQ 181
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G ++D +R +L+ +LL EE EL Q+ L+ LE+ + + Q G+ PT +EWA
Sbjct: 401 GERKDDTIRSYLYEIGRYQLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWA 460
Query: 310 KAIGLS--CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ G L+ + G S++E+++ ANLRLVV +AK+Y RG++L DL+Q
Sbjct: 461 RGCGYGEDVEALRKHIRDGRSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQ 513
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I +L+ LE+ + +L + R+P EWA + L
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSL 140
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 141 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+SQ GREP+ +W++A
Sbjct: 8 TDPVRSYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ +L R+P EWA+A+ +
Sbjct: 62 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDM 121
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 122 PLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + KL EP EWA A+ +
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDM 140
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 141 ALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R + KK+ +E D +RL+L +LL ADEE EL +I DL+ LE+ + KL +
Sbjct: 59 RVQTKKKQFTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLND 113
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 114 LDREPHDREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 173
Query: 359 LQ 360
+Q
Sbjct: 174 IQ 175
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+ S KK +E D +R++L +LL A+EE EL +I DL+ LE+ +L+ +
Sbjct: 53 RETSKKKPYTE-----DSIRVYLQEIGRIRLLRAEEEIELARKIADLLELERIYEQLRKR 107
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P EWA+A+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 108 LGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 167
Query: 359 LQ 360
+Q
Sbjct: 168 IQ 169
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 67/106 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q + LE K L + G+EPT+ +WAKA +
Sbjct: 9 DPVRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKM 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ ++L+S + +G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 TQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 65 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 120
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 121 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 180
Query: 359 LQ 360
+Q
Sbjct: 181 IQ 182
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 65 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 120
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 121 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 180
Query: 359 LQ 360
+Q
Sbjct: 181 IQ 182
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 50 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 105
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 106 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 165
Query: 359 LQ 360
+Q
Sbjct: 166 IQ 167
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LLT +EE ++Q I L K K LQ + G+EPT +WAK
Sbjct: 8 NDLVRSYLKEIGRVDLLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS ++LK+ L +G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSVKELKTTLEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 64/100 (64%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW R+LLTA EE E IQDL++LE +++L G +PT +WA A G+ + L+
Sbjct: 230 LWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLR 289
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ G + +++ +N+RLV+ +A++++G G+ +DL+Q
Sbjct: 290 KRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQ 329
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 64/100 (64%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW R+LLTA EE E IQDL++LE +++L G +PT +WA A G+ + L+
Sbjct: 230 LWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLR 289
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ G + +++ +N+RLV+ +A++++G G+ +DL+Q
Sbjct: 290 KRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQ 329
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 155 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEW 214
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 215 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 266
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+++ KL + R P EWA ++ +
Sbjct: 66 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEM 125
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L+ G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 126 ELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 135 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEW 194
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 195 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 135 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEW 194
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 195 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +RL+L LLT ++E +L ++Q ++RLE K +L G EP++ W KA
Sbjct: 21 SDNVRLYLRDIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAAD 80
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L++ L G+ +++K+I ANLRLVV +AK+Y+ R + L DL+Q
Sbjct: 81 LEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQ 127
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+E ++ +S+ G P++ EW
Sbjct: 102 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEW 161
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 162 AVLADMPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 9/127 (7%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+ VKKK D +RL+L +LL ADEE EL +I DL+ +E+ + +L +
Sbjct: 91 RRTQVKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLCQE 146
Query: 299 FGREPTLIE-----WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
G +E WAK +G++ + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 147 LGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGL 206
Query: 354 SLHDLLQ 360
S DL+Q
Sbjct: 207 SFQDLIQ 213
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q ++ LEK K++L + +EP+L EWA+A L
Sbjct: 9 DPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S R+LK +L G +++K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L L + K L QFG EPT +EW++A G
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +L+ + G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSLVELQQAIEQGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+E ++ +S+ G P++ EW
Sbjct: 102 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEW 161
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 162 AVLADMPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 68/106 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q L+ LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S R+ +S + SG +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 68/107 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+++ GREP+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 142 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEW 201
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 202 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 253
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL QI DL+ LE ++ GR PT EWA A +
Sbjct: 80 DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDI 139
Query: 315 -SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 140 PNMRQFNRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 186
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R++L LL DEE EL Q+Q L++L K LQ+ G E + +WA+A
Sbjct: 48 TDLVRVYLQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAK 107
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +LK ++ +G+ +++K+I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 108 VGLFELKRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQ 154
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 119 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEW 178
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 179 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 230
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 68/106 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q ++ LEK K++L + +EP+L EWA+A L
Sbjct: 9 DPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S R LK +L G +++K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L LE+ K L Q G EPTL EWAKA
Sbjct: 20 TDLVRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASS 79
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +L+S + +G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 80 LSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 126
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + ++ + R P+ EWA+ + +
Sbjct: 62 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVNM 121
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 122 RLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ DL E+ G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 71 NLEDLDREIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 235 TYNSRKASVKKKL--SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
T SR +VK+ + D D +R +L LLT ++E Q+Q ++ + K
Sbjct: 3 TIKSRPTTVKQTYMGARQSDSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAK 62
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
L+ + REPT EWA+A+G S DLK+ + G S++K+I ANLRLVV +AK+YQ R
Sbjct: 63 ETLEKKLKREPTEEEWAEAVGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRN 122
Query: 353 ISLHDLLQ 360
+ DL+Q
Sbjct: 123 LEFLDLIQ 130
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 203 PLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLW 262
PLE+++ + ER ++K E+ +R +V K F + + FL
Sbjct: 205 PLEDIRHLEKQ---EREILSMAITKEDAMLIESIVNRPTTVSTK---QFKKGSSMGAFLK 258
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
+ LL ++ L +I+ L + +L+ Q+GREP +EWAK++ +S +L
Sbjct: 259 EIGSVPLLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSSEELTRN 318
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +RE L+ ANLRLVV VAKQ+ RG+S+ DL+Q
Sbjct: 319 LLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQ 356
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG---REPTLIEWAKA 311
D +RL+L +LL ADEE EL +I DL++LE ++ +L Q + L +WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + K+ LHSG +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 131 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 190
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 191 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 242
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
++ +P VT YN+ A +DP+ LLTA EE EL ++Q
Sbjct: 26 EIDRPTVTPSSAYNNWSA------------DDPVGALFKEMARYPLLTATEEVELARRVQ 73
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
+L+ L++ + +LQ + R PT E A A+G+S L+ H S++ K+I++NLRLVV
Sbjct: 74 ELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQSAKRKMISSNLRLVVS 133
Query: 344 VAKQYQGRGISLHDLLQ 360
+AK+Y RG+ DL+Q
Sbjct: 134 IAKRYLNRGVPFLDLIQ 150
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 67/106 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q L+ LEK + + + G+EPT I+WAK +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++L+S + G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 127 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 186
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 238
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 9/127 (7%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A+ KKK D +RL+L +LL ADEE EL +I DL+ LE+ + ++ Q
Sbjct: 55 RRATAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQ 110
Query: 299 FGREPTLIE-----WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+P +E WA + ++ + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 111 LDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 170
Query: 354 SLHDLLQ 360
S DL+Q
Sbjct: 171 SFQDLIQ 177
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT +EE IQ+L+ LEK+K L + EPTL EWAKA +
Sbjct: 9 DTIRVYLKEIGRIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++L+ ++ G ++ +++ ANLRLVV +AK+Y R + L DL+Q
Sbjct: 69 SEKNLQIKITQGEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQ 114
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ DL ++ G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 71 NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ DL ++ G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 71 NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
++D ++ ++ T +LTA EE L QI+ + +EK L+ GR+PT EW +
Sbjct: 71 QSDTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFV 130
Query: 313 GL-SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GL S D++ L + S+ +INANLRLVV AK YQ RG+S DL+Q
Sbjct: 131 GLKSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQ 179
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 194
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 148 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEW 207
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 208 AALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 259
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 134 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 193
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 194 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 245
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL DEE +L +I L+ E K L+ + REPT EW A
Sbjct: 112 DDSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACK 171
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S R +S LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+Q
Sbjct: 172 VSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 219
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 194
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ GR+P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 179
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 187 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEW 246
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 247 AALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 298
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q +++L + K +L + REPT +EWA +
Sbjct: 24 TDTVRTYLHEIGRVALLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQ 83
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 84 LSEAELKRLMHQGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
+SR+A + + D D +R +L LLT ++E L Q+Q+L+RLE+ + +L+
Sbjct: 19 DSRQAPIAVRTLPPVD-GDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEEAEQELE 77
Query: 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISL 355
+ G ++P+ EWA A GLS LK +L SG ++E+++ ANLRLVV VAK+Y R + L
Sbjct: 78 MRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMEL 137
Query: 356 HDLLQ 360
DL+Q
Sbjct: 138 LDLIQ 142
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA---- 309
D +RL+L LL DEE L ++QD ++L + +LQ + GREPTL EWA
Sbjct: 43 TDLVRLYLQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARAN 102
Query: 310 ---KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 103 QYPEWANLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 156
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++ K KL + GREP+ EWA+ G
Sbjct: 9 TDSVRTYLREIGRVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S ++LK L G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 VSLKELKQALEDGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 227 KPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+P VT YN+ A +DP+ LLTA EE EL ++Q+L+
Sbjct: 29 RPTVTRSSAYNNWSA------------DDPVGALFKEMARYPLLTAAEEVELARRVQELV 76
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
L++ + +LQ + R PT E A A+G+S L+ H S++ K+I++NLRLVV +AK
Sbjct: 77 ALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQSAKRKMISSNLRLVVSIAK 136
Query: 347 QYQGRGISLHDLLQ 360
+Y RG+ DL+Q
Sbjct: 137 RYLNRGVPFLDLIQ 150
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R +L LLT +EE ++Q ++ LEK K++L EPTL EWAKA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++LK + G +++K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQ 114
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q + LEK + + G+EPT +WA+A +
Sbjct: 9 DPVRSYLREIGRVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S R+L S + SG +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SRRELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L+ L + + KL + R PT EWA+
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS DL + + G +++K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 77 LSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|428213655|ref|YP_007086799.1| sigma-70 family RNA polymerase sigma factor [Oscillatoria acuminata
PCC 6304]
gi|428002036|gb|AFY82879.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoria
acuminata PCC 6304]
Length = 619
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E L Q+Q I+LE+ K L S+ REPT EWA A GLS L+ + G
Sbjct: 198 LLKREDEISLAQQVQRWIQLEQGKQSLNSKLHREPTRSEWANATGLSLSQLEDAISKGRK 257
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ L+ +NLRLVV +AK YQ RG+ L DL+Q
Sbjct: 258 AQKSLVYSNLRLVVSIAKIYQHRGLELLDLIQ 289
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 124 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEW 183
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 184 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 235
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 60/92 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE EL Q+Q L+ +++ +L + GR+PT E A+A+ L+ R ++ L+ G
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQI 135
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S+ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 136 SKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+QDLI+L+ + +L Q R+P EW+ A
Sbjct: 8 KDSVRSYLREIGRVPLLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +L+ LH G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE L Q+Q L+ L++ K KL + G + +EW++A G
Sbjct: 17 TDTVRTYLQEIGRVPLLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAG 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S +L +L G ++ K+I ANLRLVV VAK+YQ R + DL+Q
Sbjct: 77 ISETELVHQLRHGERAKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQ 123
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T++ KAS K + D +R +L LLT ++E ++Q L+ + E K
Sbjct: 5 TFSDTKASNTNKAT-----TDTVRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEK 59
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L + R PTL EWA + LS ++L +L+ G ++ K+I ANLRLVV +AKQYQ R +
Sbjct: 60 LTIELKRTPTLSEWANQMQLSEQELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLE 119
Query: 355 LHDLLQ 360
L DL+Q
Sbjct: 120 LMDLIQ 125
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T++ KAS K + D +R +L LLT ++E ++Q L+ + E K
Sbjct: 5 TFSDTKASNTNKAT-----TDTVRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEK 59
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L + R PTL EWA + LS ++L +L+ G ++ K+I ANLRLVV +AKQYQ R +
Sbjct: 60 LTIELKRTPTLSEWANQMQLSEQELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLE 119
Query: 355 LHDLLQ 360
L DL+Q
Sbjct: 120 LMDLIQ 125
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ + +S+ G P+ EWA
Sbjct: 110 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWA 169
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 170 ALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 220
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 67/106 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT +EE L QIQ+L+ LEK++ L+ + REP+ EWA+A +
Sbjct: 9 DTIRVYLKEIGRIPLLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++L ++ G ++ K++ ANLRLVV +AK+Y + L DL+Q
Sbjct: 69 SEKNLDIKISRGEKAKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQ 114
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LLT +EE ++Q I++EK K LQ + G EPT +WA A
Sbjct: 8 NDLVRSYLKEIGRVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +L++ + +G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ITVEELRNIIQAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT++EE ++Q L+RL + L Q R+PT EWA GL
Sbjct: 37 DMVRTYLHEIGKIPLLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGL 96
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L+ + G S+ K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 97 NIEELEQIVRDGTRSKRKMIEANLRLVVSVAKKYQKRNLELLDLVQ 142
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q ++ L + + + GREP+L EWA+
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ LH G +++K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 154 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEW 213
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 214 ATLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 265
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + S G P EW
Sbjct: 145 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEW 204
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 205 ASLVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 256
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG----REPTLIEWAK 310
D +RL+L +LL ADEE EL +I DL+ LE+++ +L ++ G E + +WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 207
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGN 327
LLT ++E L Q+Q+L+RLE+ + +L+ + G ++P+ EWA A GLS LK +L SG
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGR 93
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 9 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 68
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 67/106 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LL+ +EE ++Q LI LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ S + +G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L+ L K+ L +FGREP+L EWA A
Sbjct: 8 TDTVRTYLREIGRVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAAN 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L+ + +G +++ +++ ANLRLVV VAK+Y R I L DL+Q
Sbjct: 68 IDELQLQKTISAGENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQ 114
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+++ +LQ R PT +EWA+A+GL R L++ L+ G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGR 132
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 133 SAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 165
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 15 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 74
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+Q
Sbjct: 75 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 122
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 9 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 68
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL QI+ L +E+ +S+L + GR P+ E A A+GL+ R L+ +LH
Sbjct: 109 LLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRV 168
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 169 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQ 200
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 82 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWA 141
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 142 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 192
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 59/92 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E Q+Q +I L K L Q REPTL EWA+ + LS + L+ +L +G
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K+I ANLRLVV VAK+YQ R + DL+Q
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQ 130
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + S G P EW
Sbjct: 128 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEW 187
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 188 AALVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 239
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKAS-VKKKLSEGFDRNDPLRLF--LWGPETRKLL 270
R ER++++ + + + N+ AS +KK +G PL F + GP +LL
Sbjct: 174 RRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGC--QTPLGCFYKMTGP---RLL 228
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
TA++E E IQDL++LE + ++ G EPT +WA A G L+ L+ G +
Sbjct: 229 TAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNHGVYCK 288
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ +N+RLV+ +AK+++G G+ DL+Q
Sbjct: 289 NRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 318
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 214 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 270
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 271 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 67/106 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LL+ +EE ++Q L+ LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ S + +G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+ + G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 171 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 227
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 228 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 287
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + +++ + RE + EW K + +
Sbjct: 70 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDELDREISDAEWGKEVDM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R + L G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 130 ELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+++ +LQ Q R P+ +EWA+A+GL R L++ L+ G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGR 132
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 133 AAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 165
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL IQ L +E+ +++ + + GR P E A A+GL+ R L+ LH
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 140 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEW 199
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 200 AALVEMPVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 251
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 60/107 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L++ + L SQ GREPTL EWAK
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESK 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L DL + G ++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 LDIADLNDAIADGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
++D +R +L +LL EE EL Q+ L+ LE+ + + + G+ PT EWA+
Sbjct: 274 KDDTIRSYLREIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGC 333
Query: 313 GLS--CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G L+ + G ++E+++ ANLRLVV +AK+Y RG++L DL+Q
Sbjct: 334 GYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQ 383
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 17 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 73
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 74 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 133
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL +Q L++ E+ + +LQ P+ EWAKA+G + + LH G
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL +Q L++ E+ + +LQ P+ EWAKA+G + + LH G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 79 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 138
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 139 ELIDMPLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 79 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 138
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 139 ELIDMPLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D D +R +L LLT ++E +++ L L++ K L Q GREPT EWA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ LKS + G S++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQ 114
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW-AKA- 311
D +RL+L LL DEE L ++QD ++L + +LQ + GR+PTL EW AKA
Sbjct: 45 TDLVRLYLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKAN 104
Query: 312 -----IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 105 QYPEWAQLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 158
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q +++L + K L + GRE +L EW + +GL
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +LK + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 AETELKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 67/107 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q + L+ ++KL++ REP+ +EWA+A G
Sbjct: 8 SDLVRTYLKEIGRVPLLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S +L + +G+ ++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISVDELTQAMDAGDLAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + + G P EW
Sbjct: 144 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEW 203
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + +S + L G ++ K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 204 AALVEMSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 255
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 54/77 (70%)
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
DL++LE+ + +L ++G EPT +WA A G++ R L+ L+ G ++K+I +N+RLV+
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 344 VAKQYQGRGISLHDLLQ 360
+ K YQG G++L DL+Q
Sbjct: 63 IXKNYQGAGMNLQDLVQ 79
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP ++WA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL +EE +L +I L+ E K L+ + REPT EW A
Sbjct: 129 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 188
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S + +S LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+Q
Sbjct: 189 VSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 236
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K+ L + GR+PT EWA+A G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +L+ +H+G ++ ++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 LSETELQRTIHAGERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 66/112 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 163 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEW 222
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 223 AALVEMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 274
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L S+ G EP+L EWA + L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 GEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q LI+L+ + +L Q R+P EW+ A
Sbjct: 8 KDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +L+ LH G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +EK+ L + GR+PT EWA+A+G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ + G ++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE Q+Q L++ + +L +Q GREP++ EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ DL + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 INSADLLGAIADGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE--WAKAI 312
D +R +L + LL A +E EL +IQDL+ LE + L + G L E WA A
Sbjct: 201 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAA 260
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GL+ L+ LH G +++ ++I ANLRLVV +AK+Y +S DL+Q
Sbjct: 261 GLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQ 308
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQTMMNLLEKKEELAQRVG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EP++ EWAK + + + L+ L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPSIQEWAKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D +D + F LL ADEE EL ++Q L+ ++ + L S+ R T E A A
Sbjct: 68 DSDDAVGAFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQESLSSKLNRRATQAETAAA 127
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GL+ R L+ +L+ G ++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 128 FGLTERQLEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQ 176
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 62/115 (53%)
Query: 246 KLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 305
K +G D +R +L LLT +EE Q+Q L+ + L QF R PT
Sbjct: 15 KAKQGTLSADMVRTYLHEIGKIPLLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQ 74
Query: 306 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EWA+A+GL L L G ++ K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 75 EEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQ 129
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE++ ++ ++ G P EW
Sbjct: 116 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEW 175
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 176 AAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQ 227
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A EE EL +Q L++ E+ + +L+ + R PT EW +A+G + + LH G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 162
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S +KK +G +PL F + R+LLTA +E EL IQD ++LE + ++ G
Sbjct: 211 GSSRKKRVKGC--RNPLGCF-YKMSARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNG 267
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA A G L+ L G + ++ +N+RLV+ +AK+++G G DL+Q
Sbjct: 268 GEPTFTQWAAAAGTDENTLRKRLSYGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQ 327
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + G+ P EW
Sbjct: 85 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREW 144
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 145 AVLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 196
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +EK L + GR+PT EWA+A+G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ + G ++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL +EE +L +I L+ E K L+ + REPT EW A
Sbjct: 129 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 188
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S + ++ LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+Q
Sbjct: 189 VSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 236
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L +++ L + GRE T EWA A L+ +L + L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQKRNLELLDLVQ 105
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ + +S+ G PT EWA
Sbjct: 123 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWA 182
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + + L ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 183 ALVNMPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 233
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT + L +I+ L + +L+ ++G+EP EWAKA+ +S +L L
Sbjct: 273 LLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQR 332
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+RE L+ ANLRLVV VAKQ+ RG+S+ DL+Q
Sbjct: 333 ARESLVAANLRLVVSVAKQFTNRGLSMQDLIQ 364
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+L+ LE +S+L+S+ G +P+ + AKA GLS LK +L G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N + + K+ S + D ++ +L + LLT ++E EL +IQDL+ LE + +L+
Sbjct: 236 NVVRKTTKRDPSTSRRQTDSMKTYLKDIGSVSLLTGEQEVELAMRIQDLVYLEGVREQLE 295
Query: 297 SQFGR-----EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
+ R E + +WA A ++ R+LK L +G ++ ++I ANLRLVV +AK+Y +
Sbjct: 296 EEAKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANK 355
Query: 352 GISLHDLLQ 360
+S DL+Q
Sbjct: 356 SMSFQDLIQ 364
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL +EE +L +I L+ E K L+ + REPT EW A
Sbjct: 132 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 191
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S + ++ LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+Q
Sbjct: 192 VSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 239
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R++L LLT+D+E Q+Q +I +E+ K +L Q REPTL E A + S
Sbjct: 2 VRVYLQEIGQFPLLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSE 61
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ L G +++K+I ANLRLVV VAK+YQ R + DL+Q
Sbjct: 62 TEVNQILQQGQRAKQKMITANLRLVVSVAKKYQHRNLEFLDLVQ 105
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL DEE +L ++ L E+ + +LQ Q GR PT EWA +GL + + L S L+ G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLTADEE+ L +IQ +I+ E L S+ R PT+ EWA A G + D + +
Sbjct: 10 ELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTSR 69
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++++++ +N+RLVV +A++Y G+SL DL+Q
Sbjct: 70 EAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQ 102
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%)
Query: 260 FLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDL 319
+L G LLT ++E L +Q L++LE + L REPTL EWA+A LS L
Sbjct: 14 YLKGIGRFPLLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEAL 73
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G +++K++ +NLRLVV +AK+Y+G + + DL+Q
Sbjct: 74 KKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQ 114
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A+EE EL Q+Q L+ +E+ K +L+ + R P+ E A+A+G + + + LH G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L + G+EP L EWA + +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R++L LLT ++E Q+Q I L+ K L Q GREP+L EWAKA G
Sbjct: 12 TDLIRIYLREIGRVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASG 71
Query: 314 -LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L L + G S++ K++ ANLRLVV +AK+Y R + L DL+Q
Sbjct: 72 KLDNTQLTQAIADGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQ 119
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ Q G + E AKA GLS LK +L SG
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++++ANLRLVV VAK+Y R + L DL+Q
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 116
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ Q G + E AKA GLS LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++++ANLRLVV VAK+Y R + L DL+Q
Sbjct: 100 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNSKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EP+ EWAKA+ L +LK + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 67/111 (60%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 81 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 140
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 141 ELTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 191
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L+RL + L ++ GREPTL E A
Sbjct: 15 TDMVRTYLHEIGRVPLLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAE 74
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L L G +++K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 75 MPPEKLNLALRKGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 121
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 67/106 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
+PL ++ + KLL DEE L QIQ ++LE+ + +L++ G P+ EWA + L
Sbjct: 226 NPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLHL 285
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L EL + ++E +I+ANLRLVV +A+ Y+GRG++ DL+Q
Sbjct: 286 TKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQ 331
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ +
Sbjct: 21 TDSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVN 80
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 81 LSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ +
Sbjct: 21 TDSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVN 80
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 81 LSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL--QSQFGREPTLIEWAKAI 312
D +R +L + LL A +E EL +IQDL+ LE + L ++ G E T +WA A
Sbjct: 15 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAA 74
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GL+ + L L G S++ ++I ANLRLVV +AK+Y +S DL+Q
Sbjct: 75 GLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQ 122
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL +EE EL ++ +++ E+ + +L+ Q R+PT EW KA+ L S R L++ L+ G
Sbjct: 69 LLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGR 128
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 129 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE L Q+Q L LEK + L + R PT EWA A+ LS L + + +G++
Sbjct: 22 LLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDT 81
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 113
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 250 GFDRN-----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
G D+ D +R +L LL+ ++E Q+Q ++ L +K +L REPT
Sbjct: 8 GMDKKKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPT 67
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L EWA+A + +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 68 LEEWAQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNTKTKQPTYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EP+L EWAK + L + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPSLQEWAKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE L ++Q + L++ K L REP EWA+A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S +L+ + +G +++EK++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ +
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVN 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 LSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 7/94 (7%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELHS 325
LL DEE EL Q++ ++ ++K LQ E + I EWAK IG+S R+L+ L
Sbjct: 20 LLKPDEEIELGKQVKRMMTCWEKKENLQV----EKSYITEEEWAKEIGISVRELQLILKR 75
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
G ++EK+I ANLRLVV V+K+YQG+G+ DL+
Sbjct: 76 GKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLV 109
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+ + +LQ F R PT EWA+A+ ++ R L++ L+ G
Sbjct: 76 LLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 136 CAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L + K L + GREP+ EWA+A LS L L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT+D+E Q+Q +I +E +K +L Q REP L E A +
Sbjct: 7 DMVRVYLREIGQFPLLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKLAELADFVNK 66
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ L G +++K++ ANLRLVV +AK+YQ R + L DL+Q
Sbjct: 67 SETEVTQILQLGQRAKQKMVTANLRLVVSIAKKYQRRNLELLDLIQ 112
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L Q REP+L EWA + +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D ++ ++ LL +EE L +IQ LI+ E+ + +L+ Q R PT EWA AI
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G++ +K ++ ++ L +NLRLV+ +AK+YQGRG+++ DL Q
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQ 108
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L+ K L + G EPTL EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +L S +++G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSPSELNSHINAGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q +I L+ +K L+ Q EP+ E A+ + L
Sbjct: 18 DIVRNYLQDIVRVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++K G +++K+I ANLRLVV +AK+YQGR + DL+Q
Sbjct: 78 SEMEVKEIFQKGVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQ 123
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L + K L + GREP+ EWA+A LS L L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 140
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LL DEE L +++ ++ E + L Q R P+ EWA+AIGLS R+L+ L+ G
Sbjct: 76 LLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGK 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 136 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + +LLTA +E E IQDL++LE + +L G
Sbjct: 214 SSARKKRLKGC--RSPLGCF-YKMTGWRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 270
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 271 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+PTL EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATK 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 LEPVELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+QDL+ LE +++L+S G +P + +A GLS LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K KL Q R+PT EW + I +
Sbjct: 23 DTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINI 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L +LH G +++K+I ANLRLVV +AK+YQ + DL+Q
Sbjct: 83 GEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQ 128
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q ++ L +++ + GREP+ EWA+ +
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIAETLGREPSQQEWAEGVQ 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS DL L G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 77 LSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQ 123
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 63/92 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+QDL+ +E +++L+S+ G +P+ + AKA GL+ LK +L G
Sbjct: 37 LLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A EE EL +Q L+ E+++ +L + PT +WA+A+G S R ++ L+ G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE Q+Q L++ + +L +Q GREP++ EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ DL + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 LNPADLLEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+QDL+ LE +++L+S G +P + +A G+S LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 61/92 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + + ++ LQ Q G++PT ++ A + L+ + L+S L+ G
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A EE EL +Q L+ E+++ +L + PT +WA+A+G S R ++ L+ G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNSKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EP+ EWAKA+ L +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 60/92 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE +L +Q L+ +++ + +LQ+ GR+P E A+ + ++ R L++ L+ G
Sbjct: 79 LLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EPT+ EW+K + + + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EPT+ EW+K + + + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA +E EL AQ + + + +L + GR+PTL E A +G
Sbjct: 130 SDPVRMYLREIGKVDLLTAKQEIEL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMG 188
Query: 314 LSCRDLKSELHS--------GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L + +K+ + G ++ LI ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 189 LDKKVIKAVEKTSKDWNDKQGEAAERMLIQANLRLVVSIAKKYMGRGLTFLDLIQ 243
>gi|308205502|gb|ADO18992.1| RNA polymerase sigma 70 subunit [Nostoc flagelliforme str.
Sunitezuoqi]
Length = 165
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 60/92 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E +Q ++ +E+++S L Q REPT E A ++G S +++S LH G
Sbjct: 21 LLTPEQEITNARLVQQMMAIEEQRSNLALQLNREPTTRELATSLGQSEAEVESILHQGER 80
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K++ ANLRLVV +AK+YQ R + DL+Q
Sbjct: 81 AKQKMVTANLRLVVAIAKKYQNRNLEFLDLIQ 112
>gi|299115565|emb|CBN75768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ectocarpus
siliculosus]
Length = 244
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
KLLT EE+EL +IQ L+ + +L + GR PT EWA++ ++ +L+ L G
Sbjct: 21 KLLTRAEEYELGTKIQTLMGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVGG 80
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++++ ++ AN+R+V+ +A++YQ G+ L DL+Q
Sbjct: 81 AAKKTMVEANMRMVISIARKYQHLGVPLTDLIQ 113
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 63/92 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ + G + E AKA GLS LK +L SG
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++++ANLRLVV VAK+Y R + L DL+Q
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 116
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E L E AKA GLS LK +L +G
Sbjct: 59 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 118
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 119 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 151
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+YN KK +E D +R +L LLT ++E L Q+Q+LI LEK + +
Sbjct: 3 SYNPLIVPAKKSATE----IDLVRSYLRDIGRVPLLTNEQEITLGRQVQELISLEKLERE 58
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L+S G++P+ + A G+S R+L L G ++E++++ANLRLVV VAK+Y R +
Sbjct: 59 LESTNGKKPSKEDLAIDAGISVRELSKRLKRGVRAKERMVSANLRLVVSVAKKYTKRNME 118
Query: 355 LHDLLQ 360
L DL+Q
Sbjct: 119 LLDLIQ 124
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+L+ LE +++L+S+ G +P+ AKA GLS LK +L G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
++VKK+ G + D +R +L LL ++E Q+Q ++ L + K L +
Sbjct: 2 STVKKESDNGKTKLTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMILVEAKEALAKE 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G EP+L EWA + S DLK ++ +G +++K+I ANLRLVV +AK+YQ R + DL
Sbjct: 62 LGYEPSLSEWAIYVNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 359 LQ 360
+Q
Sbjct: 122 IQ 123
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E L E AKA GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E EWAKA G+S LK +L +G
Sbjct: 22 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGR 81
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 114
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LL+ D+E L +Q+L+ LE + QS G++P L E A A G
Sbjct: 25 NDLIRSYLRDIGRVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAG 84
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ LK + G ++E+++ ANLRLVV +AK+Y R + L DL+Q
Sbjct: 85 LTVGALKKKFRLGERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQ 131
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q ++ L+K+K L+ Q EP+ E AK +
Sbjct: 12 TDIVRNYLQDIVRVPLLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQ 71
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS ++K G +++K++ ANLRLVV +AK+YQ R + L DL+Q
Sbjct: 72 LSEIEVKDIFQQGTQAKQKMMVANLRLVVAIAKKYQRRNLELMDLIQ 118
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L+ +E+ + LQ Q R+P E +G+S + L+ +L+ G
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQ 193
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q ++ L + + GREP+ EWA
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ LH G +++K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q L L K L ++ GR P+ EWA+A
Sbjct: 8 SDLVRTYLREIGRVPLLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +LK + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSSAELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQ 114
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S D+K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SETDVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L +K KL+ + G+E +L EWA + L
Sbjct: 18 DLVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SEAELDRAIKQGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKA 311
D +RL+L +LL ADEE EL +I DL+ LE ++ +L ++ P + EWA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G+ + + LHSG +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q ++ L K +L + EPTL EWA +
Sbjct: 29 DDIVRSYLQEIGRVDLLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVE 88
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L L+ +L G+ +++K+I ANLRLVV VAK+YQ R + DL+Q
Sbjct: 89 LGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQ 135
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q +++ +EK KL + EP+ EWA + L
Sbjct: 24 DTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVEL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L L G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 84 TEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 129
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
++VKK+ G + D +R +L LL ++E Q+Q ++ L + K L +
Sbjct: 2 STVKKESDNGKTKLTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMLLLEVKEALTKE 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G EP+L EWA + S DLK ++ +G +++K+I ANLRLVV +AK+YQ R + DL
Sbjct: 62 LGYEPSLSEWAIYVNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 359 LQ 360
+Q
Sbjct: 122 IQ 123
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ +EE Q+Q L L++ L GREPTL+EWA+A LS +L+ + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++++++L Q EPT +WA+ +
Sbjct: 21 TDSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVN 80
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 81 LSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE L ++Q + L+ K L REP EWA A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +L + +G +++EK++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 ITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE + Q+Q L + + L +Q GREP+L EWA A
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L + G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 LEVAELNDAIADGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q + L K++++ G++P+ EWA A L
Sbjct: 18 DAVRTYLHEIGRVPLLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +LH G ++ ++I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 DTATLTQQLHEGEQAKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 70/121 (57%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
K ++++ + G D +R +L LLT +EE Q+Q L+ L++++ L+
Sbjct: 3 KVNLQQAPNNGKSSADMVRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESL 62
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
RE T EWA+A L+ + L+ +L G ++ K+I ANLRLVV +AK+YQ R + DL+
Sbjct: 63 DREATREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLI 122
Query: 360 Q 360
Q
Sbjct: 123 Q 123
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S D+K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SETDVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L EK+ L + REPT EWA +
Sbjct: 24 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNK 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +LK + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 84 SEAELKKAIDQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 129
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+RL+L LL +EE L RL +E+ +L Q G + L WA G
Sbjct: 19 SDPIRLYLREIGRVDLLRQEEEILLA-------RLVQEREELLRQRG-DGELTAWAGRCG 70
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ DL+ LH G ++E+++ ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 71 VPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQ 117
>gi|297608012|ref|NP_001061065.2| Os08g0163400 [Oryza sativa Japonica Group]
gi|255678168|dbj|BAF22979.2| Os08g0163400 [Oryza sativa Japonica Group]
Length = 520
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 67/103 (65%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 206 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 265
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q
Sbjct: 266 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 308
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+ K K ++ D +R +L +LT ++E Q+Q ++ L+++K L +
Sbjct: 4 ANAKPKAAKSTFTADMVRTYLHEIGRVPMLTHEQEIIYGKQVQQMMALQEKKEALAKKLN 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
REPT E A LS +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 REPTDAELASHTNLSEDELKGIMHRGRRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQ 123
>gi|452819932|gb|EME26982.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 544
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGNS 328
L+ +EE ++ QIQ L E+E+ ++ GR PTL EWA+A+G S + ++
Sbjct: 219 LSFEEEVDICNQIQLLRTWERERDRVSELLGRNPTLAEWAEAVGFSDSVEFARKIKGLRE 278
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S++K+I++NLRLV ++A+ Y G+SL DL+Q
Sbjct: 279 SKDKIIHSNLRLVYYIARFYSKYGLSLQDLMQ 310
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N+ A +K LSE D + F LL A+EE +L Q+Q ++++E+ + +L+
Sbjct: 48 NNGGAKYQKNLSE-----DTVGAFFKEMARYPLLKAEEEVDLANQVQFILQIEEIEERLE 102
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+Q +P+ E A+++G++ + L L+ ++ K+I +NLRLVV +AK+Y RG++
Sbjct: 103 AQLNHKPSKAEIAESLGMNEKQLDHRLYQSRVAKRKMIRSNLRLVVSIAKRYLNRGVAFL 162
Query: 357 DLLQ 360
DL+Q
Sbjct: 163 DLIQ 166
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 67/103 (65%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 205 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 264
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q
Sbjct: 265 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 307
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D ++L+ + L +EE L QI L+ LEK KL+ + R P IEWA +
Sbjct: 187 DSIQLYYKQVNSFARLHPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKM 246
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L L G ++ +++ ANLRLV VAK+YQ RG+ DL+Q
Sbjct: 247 SKWELCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQ 292
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL EE EL IQ+L+ EK KL + GR PT E A A G + L LH +
Sbjct: 84 LLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRT 143
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I++NLRLVV +AK+Y RG+ DL+Q
Sbjct: 144 AKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQ 175
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD-LKSELHSGN 327
LL+ DEE L ++Q L+ L ++S+L++ GREP+ EWA A G + L++ +
Sbjct: 17 LLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGALRTRMGHMK 76
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RE+LI NLRLV+ VAK+Y G++ DL Q
Sbjct: 77 ACREELIQRNLRLVLSVAKRYGDCGLAFTDLCQ 109
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
S+ VK K +E D +R++L LLT ++E Q+Q ++ + K +L
Sbjct: 6 SQPTKVKSKNNEFSSTADAVRIYLHKIGRIPLLTHEQEIFFAKQVQQMMVMLTAKEELSE 65
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
+ REPT EWA + L L +L G +++K+I ANLRLVV +AK+YQ R I D
Sbjct: 66 KLQREPTRQEWADKMQLEEDMLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNIEFLD 125
Query: 358 LLQ 360
L+Q
Sbjct: 126 LIQ 128
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ + L EP +WA A+ +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 59/92 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE EL +++ ++ E+ + +LQ++ R+P E A +G+S R L+ L+ G
Sbjct: 86 LLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRV 145
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 146 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQ 177
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q REPT EWA + +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDI 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 AAAELPETIKRGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REPTL EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L +H G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 PEAELNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSG 326
+LL+A+EE EL QI+DL++LE K +L ++ GREP EWA A G +S + G
Sbjct: 116 ELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPGPAFQSRILKG 175
Query: 327 NSSREKLINANLRLVVHVAKQYQGR-GISLHDLLQ 360
+R +L+ +NLR VV +AK+Y + + L DL+Q
Sbjct: 176 RRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQ 210
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE L Q+Q L+ L S L REPT EWA A G+S +L + + +G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 94
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E E AKA GLS LK +L +G
Sbjct: 59 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 118
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 119 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 151
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L L + ++ L++ GREP+L EWA L
Sbjct: 9 DLVRTYLREIGRVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 69 SPGELNEIIQGGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 59/106 (55%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K KL Q GRE EWA+ + +
Sbjct: 18 DMVRTYLHEIGRVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+ G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 DPEELEKTQQKGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 6/145 (4%)
Query: 219 RSKKRKVSKPQVTNHETYNSRKASVKKKLSE-GFDRNDPLRLFLWGPETRKLLTADEEFE 277
R+ K + +KP +N E +K + E GFD + ++ +LL +EE
Sbjct: 114 RAIKSRATKPGNSNGEPPKPVSRKIKASVRETGFD---SMHYYMKTMGNHELLQKNEEII 170
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLKSELHSGNSSREKLIN 335
L +IQ LI E ++ +L+++ R PT EWA +I ++ LK ++ ++ L
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLV+ +AK+YQ RG+++ DL Q
Sbjct: 231 SNLRLVISIAKRYQNRGLNMQDLCQ 255
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT D+E +Q ++ +E+++S L Q R+PT +E A ++G
Sbjct: 7 DSVRSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQ 66
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L+S + G +++K++ ANLRLVV VAK+YQ + DLLQ
Sbjct: 67 NEAELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQ 112
>gi|125602291|gb|EAZ41616.1| hypothetical protein OsJ_26150 [Oryza sativa Japonica Group]
Length = 420
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 67/103 (65%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 106 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 165
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q
Sbjct: 166 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 208
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++ K L +Q REPTL EWA + G
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LESAELSKAIALGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL Q++ L +E K+ + R PT +E A A+ S D + L S
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 184
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ + K L + REPT+ EWA + +
Sbjct: 19 DMVRTYLREIGRVPLLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKM 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S DL + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 79 SEADLHDTVRRGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 124
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 224 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 280
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q
Sbjct: 281 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 318
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE ++Q L+ LEK K +L+ + E + EWAKA ++ L+ ++ +G
Sbjct: 23 LLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDAGEV 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I ANLRLVV VAK+Y R + L DL+Q
Sbjct: 83 AKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L + + + KL ++ REPT EWA A +
Sbjct: 6 DLVRTYLREIGRVPLLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANI 65
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L++ + +G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 66 SEGELETIIENGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 111
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL+A+EE L ++ L E+++ +L Q R P+ +E AKA+GL S R L + L+ G
Sbjct: 64 LLSAEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGR 123
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 124 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 156
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 62/92 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ + G + E AKA GLS LK +L G
Sbjct: 55 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQIGRR 114
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++++ANLRLVV VAK+Y R + L DL+Q
Sbjct: 115 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 146
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 223 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 279
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q
Sbjct: 280 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 317
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E E AKA GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+ L+ K L ++F R+PTL EWA+ L
Sbjct: 13 DLVRTYLREIGRVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKL 72
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+DL+ + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 73 EPQDLEEAIEKGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 118
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L +E ++ +L + G PT E A + LS ++L+ +LH G
Sbjct: 78 LLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRL 137
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 AKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 67/103 (65%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 74 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 133
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q
Sbjct: 134 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 176
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 62/92 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+RLE+ +++ + + G EP+ E A + G+S L+ L +G
Sbjct: 29 LLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELASSFGISPAVLRRRLINGRR 88
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 89 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 120
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GREPTL EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L + ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LELTELNQAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT++EE L Q+Q I L K +L + R+PTL EW+ L+ +L +++ G
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQ 126
>gi|125560253|gb|EAZ05701.1| hypothetical protein OsI_27933 [Oryza sativa Indica Group]
Length = 372
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 67/103 (65%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 58 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 117
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q
Sbjct: 118 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 160
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE Q+Q I L+ K LQ+ REPTL EWA LS L+ EL G+
Sbjct: 23 LLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ K++ +NLRLVV +AK+Y + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + + ++ L + G+EPT +E A + ++ + L+S L+ G
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE +L +++ L+ ++ + LQ + R+PT E A A+ ++ R L+ L+ G
Sbjct: 75 LLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRV 134
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQ 166
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L+ L KS L ++ G EP +WA+A
Sbjct: 8 TDTVRAYLREIGRVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L ++L+ + + ++ K++ ANLRLVV VAK+Y R I L DL+Q
Sbjct: 68 LEEQELQQAIATAELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQ 114
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q L+ +E +++L+S+ G +P + AKA LS LK +L G+
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L REPT+ EWA + L
Sbjct: 43 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDL 102
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LK ++ G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 103 EESALKKIINQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 148
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 61/92 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q L+ +E +++L+S+ G +P + AKA LS LK +L G+
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + G EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SENEVTQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S + D +R +L LLT +EE Q+Q +++L + K L ++ R+ T E
Sbjct: 18 SRPYSSTDTVRTYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQE 77
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA + L+ +L LH G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 WAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 124 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 180
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q
Sbjct: 181 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 218
>gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 67/103 (65%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 28 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 87
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q
Sbjct: 88 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 130
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S + D +R +L LLT +EE Q+Q +++L + K L ++ R+ T E
Sbjct: 18 SRPYSSTDTVRAYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQE 77
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA + L+ +L LH G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 WAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ +EE Q+Q ++ L + + K+ R PT EWA+A+GL
Sbjct: 27 DMVRTYLHEIGKIPLLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGL 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L S + G ++ K+I ANLRLVV VAK+YQ R + L DL+Q
Sbjct: 87 EPEILHSNIRIGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQ 132
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LLTA+EE +L ++ L E+ + KL + R P+ +E A A+GL R L + L+ G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 156
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q+Q L L+ + L ++ REPT EWA+A G+S DL+ + G
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL Q++ L +E+ K+ L GR P L + A A LS ++ L G +
Sbjct: 94 LLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRA 153
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 154 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 185
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R + +K ++ + D ++ +L T LLT EE EL +IQDL+ L +L+ +
Sbjct: 254 RNRRIARKNADTKKQTDSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEE 313
Query: 299 -FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
G+EPT WA ++ ++L+ L G ++ +I ANLRLVV +AK+Y + +S D
Sbjct: 314 NGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQD 373
Query: 358 LLQ 360
L+Q
Sbjct: 374 LIQ 376
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E Q+Q ++ L + K L+ RE TL EWA+
Sbjct: 22 DMVRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADK 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ ++K +H G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 82 TPNEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 127
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+PTL EWA
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LESTELNDIIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 11/117 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF--GREP--------- 303
D ++++L + LL A+EE +L +IQDL+ LE +L ++ G +P
Sbjct: 378 DSMKVYLKEIGSVSLLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPIAQTHGDKV 437
Query: 304 TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
T WA+ +GL+ +L+ L G +++ +I ANLRLVV +AK+Y R +S DL+Q
Sbjct: 438 TKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSFQDLIQ 494
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D D + FL LL EE EL +++ L+ L + K +L Q GR TL E A
Sbjct: 57 GLD--DAVGAFLKDMARYPLLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVA 114
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A+ L+ + L+ ++ G ++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 115 AAMNLTEQQLQIRIYRGQVAKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQ 165
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGN 327
LLT ++E L Q+Q+L+ LE+ + +L + G P+ E AKA GLS LK L +G
Sbjct: 34 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 93
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE Q+Q L++ + L S+ R+PTL EWAKA L +L + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E ++ L+ +E K L G EPTL +W+KA L+ +LK + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +++ ANLRLVV VAK+Y R + + DL+Q
Sbjct: 83 AKRQMVEANLRLVVSVAKKYLKRNVEILDLIQ 114
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT DEE Q+Q ++ L K L + +P+L EWA + L
Sbjct: 18 DMVRTYLREIGRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 PEKEVTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SESEVKQTVQQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL DEE +L ++ L E+++ L + GR P+ EWA + + + R+L S+L+ G
Sbjct: 74 LLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGR 133
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 134 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 166
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +++ + +L + G EP L EWA A
Sbjct: 8 KDLVRAYLREIGRVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS +L+ ++ G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSEAELQGVVNRGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGN 327
LLT ++E L Q+Q+L+ LE+ + +L + G P+ E AKA GLS LK L +G
Sbjct: 18 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 77
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 78 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 110
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+QDL+ LE +S+L+S+ G E E AK GLS LK +L +G
Sbjct: 45 LLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAPEALAKKAGLSGVQLKRKLQAGR 104
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 105 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 137
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 62/112 (55%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + G P EW
Sbjct: 153 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEW 212
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 213 AVLVDMPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 264
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%)
Query: 245 KKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
KK ++ D +R +L LLT ++E Q+Q ++ L K L Q REPT
Sbjct: 8 KKTTKPLFTADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPT 67
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EWA + LS +L + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 68 ASEWAAQVHLSEDELTRIITLGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 43 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQ 102
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 103 SETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 148
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 57/107 (53%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+P L EWA A
Sbjct: 39 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATK 98
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L L + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 99 LETTALNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 145
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT++EE L ++Q + L K +L + R+PTL EW+ L+ +L ++ G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQ 135
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 68/103 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + +L +I+D I L++++SKL+ + G EP+ + A+++ +S
Sbjct: 217 RIYLRGSVSKELLTHKQVVQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTP 276
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S + +RE L +NLRLV+ +A++Y G+ L DL+Q
Sbjct: 277 ELRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLGVELPDLIQ 319
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K L + R+P+L EWAKA
Sbjct: 22 TDIVRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L ++L L G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 82 LDPQELNRLLGQGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|407327705|dbj|BAM45410.1| sigma factor 5 [Marchantia polymorpha]
Length = 635
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
W +R LL+A+EE+ L + ++ +LEK + + GR+P+ EWAKA L LK
Sbjct: 328 WDSLSRDLLSAEEEYSLASLMKPAKKLEKTFKAIGEELGRDPSDEEWAKAAQLDVHTLKR 387
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQ--GRGISLHDLLQ 360
++ G ++R KLI NLRLV+ A +YQ +SL DL Q
Sbjct: 388 QVLLGRAARNKLIQHNLRLVLFQAHKYQKDNSSLSLFDLCQ 428
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q R+P L EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L + G +++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 IELVELNEAIAEGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
D +RL+L LL+ +EE L Q+Q +LI LE ++
Sbjct: 19 TDLVRLYLQDIGRVDLLSHEEELTLARQVQRRERLLRERRRLAATHPALQELIDLEDDQQ 78
Query: 294 KLQSQFGREPTLIE----------------------WAKAIGLSCRDLKSELHSGNSSRE 331
+L SQ G P + + WA+ LS +LK LH G +R+
Sbjct: 79 RLASQLGHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAELKQALHHGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+QDL+ LE +S+L+S+ G + E AK GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 232 NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291
N E N +K K + + D +R +L LLT +EE Q+Q +++ +
Sbjct: 5 NQENKNQKKTQTKFGPT-TYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLEL 63
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
K KL+ + R TL+EWA+ + +S + LK + G +++K+I ANLRLVV +AK+YQ R
Sbjct: 64 KEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKR 123
Query: 352 GISLHDLLQ 360
+ DL+Q
Sbjct: 124 NMEFLDLIQ 132
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 25 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGL 84
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 85 SESEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 130
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 67/103 (65%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A+++ +S
Sbjct: 147 RIYLRGTVSKELLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTP 206
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S + +RE L +N+RLV+ +A++Y G+ L DL+Q
Sbjct: 207 ELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQ 249
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-----REPTLIEW 308
+D +R++L +LL ADEE EL +I DL+ LE+ + + + G E W
Sbjct: 88 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLW 147
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A+ + +S + + LH G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 148 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 199
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LL A++E EL +I+ +LEK K ++ + G EPT EWA+A LS +L+ + G
Sbjct: 126 LLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEELRHMVRVGT 185
Query: 328 SSREKLINANLRLVVHVAKQY-QGRG-ISLHDLLQ 360
+R++L+ ANLR VV VAK+Y + RG +S+ DL+Q
Sbjct: 186 LARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQ 220
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 83 SESEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R FL LL+ +EE +++ L+ L + K L + EP+L WA A+
Sbjct: 20 TDTVRSFLVQIGRVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVE 79
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ L+ L +G +R+K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 80 MTPTQLQETLDNGEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQ 126
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q G +PTL EWA +
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L + + G ++ +++ ANLRLVV VAK+Y R I L DL+Q
Sbjct: 82 VEPVELNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQ 128
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E A A GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q+L+RL E+ L+ + RE T EWA+AI L
Sbjct: 18 DMVRTYLREIGRVPLLTHEEEIVYGKQVQELMRLLAERETLEERLERESTFSEWAEAIKL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++L+ + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SEKELRRAVAVGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG--REPTLIE---W 308
+D +R++L +LL ADEE EL +I DL+ LE+ + + + G +P + W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A+ + +S + + LH G ++EK++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 198
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E AKA G+S LK +L +G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REPT+ EW +
Sbjct: 21 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNT 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 81 SEAELNDLIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 126
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q G EPT+ EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASD 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 IEVSELNQAIAVGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL-EKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE QIQ ++ L E +KS + + G + EWAKA
Sbjct: 8 DSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAAD 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS R+L+ + G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 65/103 (63%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 190 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAP 249
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + +RE L +N+RLV+ +A +Y G+ L DL+Q
Sbjct: 250 ELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQ 292
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 29/135 (21%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF--------------- 299
D +R++L +LL ADEE EL QI DL+ LE+ ++++ +
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRARMGAAGTDMHSDVADLLGDDD 120
Query: 300 ---------GREPT-----LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
G + T L WA+A G++ + + G +++K++ +NLRLVV +A
Sbjct: 121 LLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIA 180
Query: 346 KQYQGRGISLHDLLQ 360
K+Y RG+S DL+Q
Sbjct: 181 KKYMNRGLSFQDLIQ 195
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTA EE+ L +++ +++ E L + GR P++ EWA A S R + + +
Sbjct: 4 LLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAAC--SPRLFREMMLTAKE 61
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++++++ N+RLVV +A++Y G G+++ DL+Q
Sbjct: 62 AKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQ 93
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + +PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E A A GLS LK +L +G
Sbjct: 13 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 72
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 73 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 105
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
DR++ L + LL++DEE L ++Q L E ++ L + GREPT +EW A
Sbjct: 131 DRDEGLHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTELEWGAA 190
Query: 312 IGLS---CRDLKSELHSGNSSREK--LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S C + E + K +INANLRLVV ++K+YQ RG+ D++Q
Sbjct: 191 ARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQ 244
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 PETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
D +R +L LL+ ++E L Q+Q+L+ LE+ + +L+ + G +P+ E A A
Sbjct: 45 GDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAA 104
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GL L+ LH+G ++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 105 GLRPEVLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 152
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D + ++L LL+ ++E Q+Q ++ + K +L + REPTL EWA + L
Sbjct: 23 DAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 83 KEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQ 128
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K L + R+P+L EWAKA
Sbjct: 22 TDIVRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L ++L L G ++ K++ ANLRL+V VAK+Y R + L DL+Q
Sbjct: 82 LDPQELNRLLAQGEIAKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQ 128
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 66/103 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 186 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPP 245
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + +RE L +N+RLV+ +A++Y G+ L DL+Q
Sbjct: 246 ELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQ 288
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 66/103 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 186 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPP 245
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + +RE L +N+RLV+ +A++Y G+ L DL+Q
Sbjct: 246 ELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQ 288
>gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17135717|dbj|BAB78263.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 316
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R++L LLT+D+E +Q +I L++++ +L + REPT +E A +
Sbjct: 6 SDLVRIYLQEIGQFPLLTSDQEITYARLVQQMIALQEQQHELTQKLEREPTTLELANFLN 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + L G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 66 KTEAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQ 112
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE EL +IQ + +++ + + + Q+G++P+ E A A+ + L+S + G ++ KL
Sbjct: 69 EEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKL 128
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
INANLRLVV VAK+Y RG+ DL+Q
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQ 155
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ ++E Q+Q ++ L+ + L+ R PT EWA+A
Sbjct: 16 GDMVRTYLHEIGRVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAAT 75
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S +L L G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 76 ISEAELDRVLRQGRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 122
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + +PT EW+ GL
Sbjct: 85 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 144
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 145 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 190
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL A+EE EL QI+ L+ ++ + +L + GR P E A A GLS +L + G
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K+I++NLRLVV +AK+Y RG+ DL+Q
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQ 124
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP + EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +++ + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N+ +A+ KK R D L +L L+ EE + +I L RLE + L+
Sbjct: 323 NNNEANGKKGKGINSRRVDSLNTYLSEIGQVNRLSLVEEKVICEEIARLTRLEAVREDLR 382
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ GR P EWA LS +L+ +L G ++ +++ ANLRLV+ AK+Y+ RG++
Sbjct: 383 RKMGRLPRENEWAWEANLSVSELRGKLIKGRRAKNRMVAANLRLVICFAKRYRNRGVAFQ 442
Query: 357 DLLQ 360
DL+Q
Sbjct: 443 DLVQ 446
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL +EE L QI+ LI++E++ +L+ + R PT E A+ L S L + L+ G
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 147
>gi|168029696|ref|XP_001767361.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
gi|56603661|dbj|BAD80742.1| plastid sigma factor PpSIG5 [Physcomitrella patens]
gi|162681425|gb|EDQ67852.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
Length = 632
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW R LLTA EE L ++ + +LEK + L Q GR+PT EWA A G+ ++
Sbjct: 326 LWDKLDRGLLTAVEENRLAVFMKPMKKLEKLQKVLMKQLGRDPTDEEWAAAAGVDLLIMR 385
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISL--HDLLQ 360
L G ++R KLI NLRLV+ A +Y +SL DL Q
Sbjct: 386 RRLALGRAARTKLIQRNLRLVLSQAYKYHKDSMSLSIQDLCQ 427
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
+T +S KA KK EG D L +L LTA+EE L +I+ L++E+
Sbjct: 235 KTESSSKADKAKK-PEGV--QDYLSTYLRDITKIDRLTAEEEIMLSKKIRTGYILKEERK 291
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + G T +WA + ++ DL ++LH +R++++ ANLRLVV V KQY G+
Sbjct: 292 KFERALGHPITKDQWAGHMHMAVGDLDAQLHEAELARDRMVMANLRLVVSVVKQYNCEGL 351
Query: 354 SLHDLLQ 360
+ DL+Q
Sbjct: 352 EVPDLIQ 358
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G + E AKA G+S LK +L +G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 65/103 (63%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL G EP+ + A+++ +S
Sbjct: 192 RIYLRGTVSKELLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTP 251
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S + +RE L +N+RLV+ +A++Y G+ L DL+Q
Sbjct: 252 ELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQ 294
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 65/103 (63%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL G EP+ + A+++ +S
Sbjct: 192 RIYLRGTVSKELLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTP 251
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S + +RE L +N+RLV+ +A++Y G+ L DL+Q
Sbjct: 252 ELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQ 294
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT EE L +++ + L +E+ KL ++ G P+ EWA + LS DL +L
Sbjct: 369 LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEW 428
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+R+K++ ANLRLVV VAKQY G+ + DL+Q
Sbjct: 429 ARDKMVMANLRLVVSVAKQYHSFGLEMADLIQ 460
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL Q++ E ++ +L + G PT + A+A+ + ++L +L+ G
Sbjct: 78 LLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKELDRKLYQGRV 137
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 138 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|323454681|gb|EGB10551.1| hypothetical protein AURANDRAFT_23034 [Aureococcus anophagefferens]
Length = 388
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELH 324
+LL ADEE L ++Q L E ++ L + GR + WA+A+ +S DL++
Sbjct: 69 RLLNADEEVALAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRAARS 128
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +R L +ANLRLVV +AK+Y+ G++ DLLQ
Sbjct: 129 RGVDARSTLTSANLRLVVSIAKRYRFCGLAQEDLLQ 164
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L + +L ++ GREPTL EW++A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAAR 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L + + G ++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 IDKTALSTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|414878913|tpg|DAA56044.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878914|tpg|DAA56045.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878915|tpg|DAA56046.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
Length = 287
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 65/104 (62%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +
Sbjct: 182 RIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAP 241
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQI 361
+L++ + +RE L +N RLV+ +A++Y G+ L DL+Q+
Sbjct: 242 ELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQV 285
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
+SE D D + FL LLTA+EE L Q+Q ++ L +++ +S G
Sbjct: 1 MSESLDLQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMVTLLEQRQPHESVEG------ 54
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W++ +G+ +L+ L G +++++++ NLRLVV +AK+Y+ RG+ DL+Q
Sbjct: 55 -WSQRLGIPLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQ 107
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 65/103 (63%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 35 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAP 94
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + +RE L +N+RLV+ +A +Y G+ L DL+Q
Sbjct: 95 ELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQ 137
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G + E AKA G+S LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL+A EE EL QI+ L+ E + +L Q R P+L EW +A+ R + L+
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVRQFEIWLYQLR 130
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ ++I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 131 AAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 163
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q+Q ++ L +KS+L+ Q RE +L EW+++ +S +L L G
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 124
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 60/92 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L +++ ++ L+ Q G +P+ ++ A + ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 62/92 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+LI +++ + KL+ + G +PT E A ++ LS +K ++ G
Sbjct: 27 LLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLDLSINQVKRKIIHGKR 86
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++++NLRLVV +AK+Y R + L DL+Q
Sbjct: 87 AKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQ 118
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + ++ L+ + G +P+ E A L+ R L++ L+ G
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 180
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE Q+Q + L+ K LQ REPT EWA +S L+ EL G+
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ K++ +NLRLVV +AK+Y + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L+ + L +++G+EPT EWAKA
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASD 67
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ +L + +G ++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LADSEELAKIIAAGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D L +L LL EE L QIQ + E + LQ G EP+ EWA A+G
Sbjct: 48 GDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALG 107
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L EL + ++ ++ ANLRLVV VAK+Y+ + +S DL+Q
Sbjct: 108 MDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQ 154
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL--------------------IAQIQDLIRLEKEKS 293
ND LRL+L LLT++EE L IA I+ L+ LE+ +
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSELHSGNSSRE 331
+ + PT EWA+A GL ++L+ L G +R+
Sbjct: 79 REANHISHWPTRQEWARAAELPLSELNRLLNEGYTLWAKESGLDTKELQQRLREGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
K ++++ + G D +R +L LLT +EE Q+Q L+ L++++ L+
Sbjct: 3 KVNLQQAPNNGKSSADMVRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESL 62
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
RE T EWA+A L+ + L+ +L G ++ K+I ANLRLVV +A+ + R + DL+
Sbjct: 63 DRERTREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIARNIKKRNLEFLDLI 122
Query: 360 Q 360
Q
Sbjct: 123 Q 123
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q L L++ K +LQ REPT EWA+ +S L+ EL G+
Sbjct: 23 LLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ K++ +NLRLVV +AK+Y + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E Q+Q ++ L + K L+ + EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L + G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SETELNHLMVQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q +I L++ K +L Q REP L EWA + L+ EL G +
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ K++ +NLRLVV +AK+Y + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQ 114
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L ++ ++ L+ + G++P+ E A ++ + L+S L+ G
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 47/166 (28%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ------------- 283
+R+AS K++ + D +RL+L LL+ +EE L +Q
Sbjct: 2 TNRQASSKRRST-----ADLVRLYLQDIGRVDLLSHEEELTLARLVQKREQLVVERRGLC 56
Query: 284 ----DLIRLEK-EKSKLQ--SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS------- 329
D+ RLE E+ +L+ S+ G +P+ +WA+A GLS +L++++ +GN +
Sbjct: 57 SKHPDVARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWAELLDM 116
Query: 330 ---------------REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 117 SPGDLQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQ 162
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
LT +E L QD L K++ +L ++ GREPT EW+ +G+S ++++E+ G +
Sbjct: 84 LTDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEEVRNEIERGRRA 143
Query: 330 REKLINANLRLVVHVAKQYQGRGI 353
R +L+ +NLRLV+ +A +Y+ R +
Sbjct: 144 RARLVASNLRLVLAIANRYKSRAV 167
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q L L++ K +LQ REPT EWA+ +S L+ EL G+
Sbjct: 23 LLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ K++ +NLRLVV +AK+Y + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q++ ++ + + L G EP+ WA+ GL L++++ +G +
Sbjct: 22 LLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGLDVETLQAQVAAGEA 81
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I ANLRLVV +AK+Y R + L DL+Q
Sbjct: 82 AKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQ 113
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE EL +IQ + +++ + + + Q G +P+ A+A+ +S L+S + G ++ KL
Sbjct: 69 EEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLRSRIRQGEQAQRKL 128
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
INANLRLVV VAK+Y RG+ DL+Q
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQ 155
>gi|299473209|emb|CBN78785.1| RNA polymerase [Ectocarpus siliculosus]
Length = 627
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL--SCRDLKSELHS 325
+LLT EE EL ++Q+L+R E+ + L+ Q GR T+ EWA + L+ E+
Sbjct: 172 ELLTRTEEIELGRKVQELLRWERVRMFLELQLGRAATMEEWAAELATMDGVEGLEREIGI 231
Query: 326 GNSSREKLINANLRLVVHVAKQ--YQGRG----ISLHDLLQ 360
++R+++I+ NLRLVVH+A++ Y+G +SL D++Q
Sbjct: 232 MKAARDRMISCNLRLVVHIARRKFYKGASGTLKVSLEDMIQ 272
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D +R ++ +LL +EE L ++Q LI+ E + +L+++ R PT EWA I
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ DLK ++ ++ L +N+RLVV +AK+YQ RG+S DL Q
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQ 108
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + ++ LQ Q G+ PT + A + ++ + L++ L+ G
Sbjct: 92 LLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGRV 151
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 152 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 183
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE + Q+Q + L + + L + G EPTL EWA A
Sbjct: 8 TDLVRTYLREIGKVPLLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +L + + ++ +++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 68 LEPLELNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQ 114
>gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor [Cyanidium caldarium]
Length = 589
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
L+ +EE E+ +I LE + L+ + GR P EWA +S +L+ +L G +
Sbjct: 272 LSLEEEKEICQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRRA 331
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +++ ANLRLV+ AK+++ RG++ DL+Q
Sbjct: 332 KNRMVAANLRLVICFAKRFRNRGVAFQDLVQ 362
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND FL +L+ + E E+ QD + LEK K + + R+PT E A A+G
Sbjct: 399 NDGTDHFLHSSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVG 458
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
+ +G ++E L+ +N RLV+ V K+Y G+G+ L DL+
Sbjct: 459 MDVMAYNMRYDAGLKAKELLLKSNYRLVMTVCKRYIGKGMHLQDLV 504
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA+ +GLS ++L S L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 138 WAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 190
>gi|1769598|gb|AAB39998.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA+ +GLS ++L S L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 138 WAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 190
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ QFG T E A L+ + L++ L+ G
Sbjct: 98 LLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRV 157
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 158 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 189
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
++E + D + FL LLTA+EE L Q+Q ++ L +++ + +S L
Sbjct: 1 MAENLELQDAVGRFLKIIGRYSLLTAEEELHLAHQVQRMMALLEQRRQHES-------LE 53
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+W++ +G+ +L+ L G +++++++ NLRLVV +AK+Y+ RG+ DL+Q
Sbjct: 54 DWSRRLGIPLEELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQ 107
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL EE EL Q++ ++ +E K R PT E A A G + L+ +L +
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 260
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
LT +E L QD L K++ +L ++ GREPT EW+ +G+S +++ + G +
Sbjct: 84 LTDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEEVRKRIERGRRA 143
Query: 330 REKLINANLRLVVHVAKQYQGRGI 353
RE+L+ +NLRLV+ +A +Y+ R +
Sbjct: 144 RERLVASNLRLVLAIANRYKLRAV 167
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ + G++P+ E A ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + ++ LQ Q G PT + A + ++ + L++ L+ G
Sbjct: 80 LLKPDEEVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQLENRLYQGRV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 252 DRN--DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
D+N DP+R +L LLT +EE ++Q L+ LE K L+ + G+EPT EWA
Sbjct: 4 DKNFTDPVRAYLREIGRVPLLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWA 63
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A L+ +L++ + +G++++ K++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 64 AAAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
R+L+ A E E+ I+ L LEK ++ L+ + R +L WA+A GL + L+ +L G
Sbjct: 260 RRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFG 319
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R++LI + LV++ A+ Y+G GI+L DLLQ
Sbjct: 320 WYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQ 353
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 64/103 (62%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +
Sbjct: 182 RIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAP 241
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + +RE L +N RLV+ +A++Y G+ L DL+Q
Sbjct: 242 ELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQ 284
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
+G +LT EE E +++ LE + ++ EPT +WA+A+G+ L
Sbjct: 122 FGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDK 181
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +G SRE++ + RLVV +A +YQG+G+SL DL+Q
Sbjct: 182 MLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 220
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
HE + +G +DP+R++L LLTA EE L Q++ R E+
Sbjct: 86 HEQDDDSLDHDLDADVDGIGVDDPVRVYLREIGRVNLLTAQEEIMLAQQVE---RGEQAN 142
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+LQ+ + T +E + L + G ++RE+LI ANLRLVV +AK+Y GRG
Sbjct: 143 ERLQNG---DYTPVERLQ--------LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRG 191
Query: 353 ISLHDLLQ 360
+SL DL+Q
Sbjct: 192 MSLLDLIQ 199
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
LR +L +LT +EE L QI L+ E+++ +L R PT E A+ +G+
Sbjct: 326 LRWYLRMIGRVDMLTPEEEVSLSRQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDP 385
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ L ++++++ ANLRLVV +AK+Y +G+ L DL+Q
Sbjct: 386 ERFRRNLAEARRAKDRMVAANLRLVVSIAKRYMRKGLPLEDLIQ 429
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 49/180 (27%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDR---NDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+ ET +RK S ++ + D +R++L +LL A+EE EL +I DL+
Sbjct: 32 IAETETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLL 91
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAI-----------GLSCRD----------------- 318
+LE+ + L + +EPT +W K I S +D
Sbjct: 92 QLERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADI 151
Query: 319 ------------------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K L+ G +++K++++NLRLVV +AK+Y RG+S DL+Q
Sbjct: 152 ISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 22/97 (22%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL---------------------- 323
+ L +++L +Q G P+L WAKA G+ DLK L
Sbjct: 127 VHLLNTRARLTAQLGHRPSLERWAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQ 186
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 187 NEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 223
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQ--------------------IQDLIRLEKEKS 293
ND LRL+L LLT +EE L Q IQ L+ LE+ +
Sbjct: 7 NDLLRLYLQDIGRVDLLTNEEEVLLARQVQQREVLLAEERALAGEHPTIQRLLELEQLQQ 66
Query: 294 KLQSQFGREPTLIEWAKAIGLS----------------------CRDLKSELHSGNSSRE 331
+ + PT EWA+A GL+ ++L+ L G +R+
Sbjct: 67 REANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKELQKRLREGRRARD 126
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 127 RMIQANLRLVVTVAKKYQQRGLELLDLVQ 155
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ Q + G P AK +G+ + L+ L+ G
Sbjct: 80 LLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKEMGIVQKQLEHRLYQGKV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 171
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
+G +LT EE E +++ LE + ++ EPT +WA+A+G+ L
Sbjct: 15 FGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDK 74
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +G SRE++ + RLVV +A +YQG+G+SL DL+Q
Sbjct: 75 MLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 113
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 64/103 (62%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +
Sbjct: 84 RIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAP 143
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + +RE L +N RLV+ +A++Y G+ L DL+Q
Sbjct: 144 ELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQ 186
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 110 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLQQQRDLATSDAAIGELYRLEELQR 169
Query: 294 KLQSQFGREPTLIEWAKAIGLS----------------------CRDLKSELHSGNSSRE 331
+ +Q PT EWA+A LS R+LK+ L +G +++
Sbjct: 170 REANQHSHWPTKQEWARAAHLSLAELQQRIEAGYGAWAREANLEARELKTALRNGRRAKD 229
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 230 HMIQANLRLVVAVAKKYQQRGMELLDLVQ 258
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R++L LLT+D+E Q+Q +I +++++ +L Q REPT E A +
Sbjct: 6 SDLIRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLN 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + L G +++K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 66 TTQAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQ 112
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +RL+L LL EE EL +I + LE+++SK Q+ W ++
Sbjct: 39 DDLVRLYLQEIGRVALLKPAEEIELARRIATWLSLEEKRSKFQAVAAES-----WLESAN 93
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ + + + G ++ L+ ANLRLVV VAK+YQGRG+ L DL+Q
Sbjct: 94 LTPQQWSTIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQ 140
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ L+ + G +PT A + ++ + L++ L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQLENRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL ++E Q+Q ++ L K KL Q R+PT +E+A+ I L
Sbjct: 23 DLVRTYLHEIGRIPLLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L +L G ++E++I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 83 SESELLQQLQQGYQAKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQ 128
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P+L WAK + +LK+ L +G
Sbjct: 104 AQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|425453974|ref|ZP_18833723.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
gi|389799829|emb|CCI20645.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
Length = 443
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK +S +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQRWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 185 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 95 STSVIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|449017553|dbj|BAM80955.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 591
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 7/109 (6%)
Query: 259 LFLWGPETRK--LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-S 315
LF + E R+ L+ +EE L ++Q L R+E+++ L+ R PT EWA+A+ + S
Sbjct: 270 LFDYLDEIRRYQLIEHEEEVALAREVQHLNRIEEKRQDLEKMLHRPPTSQEWARALNMKS 329
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR----GISLHDLLQ 360
+L+ L G+ +R +L+ +NLRLV + ++ R G+++ DL+Q
Sbjct: 330 AAELQEALARGHQARNRLVTSNLRLVNAIVNRFSRRAEAIGVTMSDLMQ 378
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P+L WAK + +LK+ L +G
Sbjct: 104 AQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK +S +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 185 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q +++L ++K +L+ + GRE T EW + G+
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGI 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 SQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ---DLIRLEKEKSKLQ-------------- 296
ND LRL+L LL+ +EE L Q+Q L+R E+E ++
Sbjct: 19 NDLLRLYLQDIGRVNLLSNEEEVLLARQVQRREQLLRQERELAEAHPVLRRLLELEELQQ 78
Query: 297 ---SQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ PT EWA+A G+S +L K++L G +R+
Sbjct: 79 REANHHCHWPTRQEWARAAGMSVAELQTILNEGYGTWSRLIELEPCTLKAQLRDGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 139 RMIAANLRLVVTVAKKYQQRGLELLDLVQ 167
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ + L+ + G++PT + A ++ + L++ L+ G
Sbjct: 90 LLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRV 149
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 150 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 181
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 65/151 (43%), Gaps = 44/151 (29%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ---DLIRLEKEKS----------------- 293
D +RL+L +LL DEE ++Q L+RL KS
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMKLLRLRNNKSAISEDKVMERFVHLIEI 118
Query: 294 --KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+L SQ G P+L WA A G+ LK + +G +
Sbjct: 119 HDRLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQA 178
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 KEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ L+ + G+ T ++ A + ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS------------- 328
++ + L + +L S G P+L WA+ G+S DLK L SG
Sbjct: 135 LERYVHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASLTVAEL 194
Query: 329 ---------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 195 EEAIREGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 235
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG--------------- 326
I+ + L + +L SQ G P+L WA G+ DLK L +G
Sbjct: 109 IERYVHLIETHDRLVSQLGHRPSLERWAATAGVEVSDLKPILAAGKQRWAELAGLSVKEL 168
Query: 327 -------NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
N ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 169 EQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ + +E+ + +L G +P++ E + + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 84 STSIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|449018705|dbj|BAM82107.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 459
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 272 ADEEFELIAQ-IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
+DEE +++ QD L K++ +L++ GREPT EWA A+ +++ + G +R
Sbjct: 120 SDEEVARLSRATQDYCALLKQRDELRNTLGREPTNAEWAAAVDAPEEEIQQRVERGRRAR 179
Query: 331 EKLINANLRLVVHVAKQYQGRGI 353
E+L+ ANLRLV+ +A +Y+ R +
Sbjct: 180 ERLVAANLRLVLAIANRYKSRAV 202
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K+ L + REPT EW +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKH 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L + G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 DEATLNKIVSQGTWAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+WA+ +G+S ++L G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 173 QWAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 226
>gi|148242803|ref|YP_001227960.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851113|emb|CAK28607.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 309
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ TL+E +
Sbjct: 17 NDPVSWYLSSIGRVPLLTPAEEIELGNQVQTMM-----------------TLVEQGEEAT 59
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R+ K + G S+E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 60 YTARE-KKLIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 105
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query: 201 GYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLF 260
G L E+++ P L++R +R ++ E R +++SE +RL
Sbjct: 33 GTSLNELEELVHPDGLQKRPGRRTTDLVRMYLQEIGRVRLLGRDEEVSEAQQVQRYMRLL 92
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E R E IQ +++ + + L S G P+L WA+A G+ +LK
Sbjct: 93 ----ELRDEAAQAEG----GTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELK 144
Query: 321 SELHSGNS----------------------SREKLINANLRLVVHVAKQYQGRGISLHDL 358
L SG ++E +I ANLRLVV VAK+YQ RG+ L DL
Sbjct: 145 PILASGKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDL 204
Query: 359 LQ 360
+Q
Sbjct: 205 IQ 206
>gi|6682869|dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 66/104 (63%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
L+ ++ G + +LLT E +L +IQ + LE++KS+L+ + G EP+ + A ++ +S
Sbjct: 193 LKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAVSLKMSR 252
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
DL+S L + +RE+L +N+RLV+ +A++Y G + DL+Q
Sbjct: 253 TDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 232 NHETYNSRKASVKKKLS-----EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+H T+ S + ++ KL+ + + D +R +L LL+ ++E L Q+Q+ +
Sbjct: 7 HHLTFMSSETIIENKLASIATLKSSNDVDLVRSYLRDIGRVPLLSHEQEITLGRQVQEYM 66
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
+E+ + + G +P++ E + + LS +K L +G ++E+++ ANLRLVV VAK
Sbjct: 67 EVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRAGQRAKERMVAANLRLVVSVAK 126
Query: 347 QYQGRGISLHDLLQ 360
+Y R + L DL+Q
Sbjct: 127 KYTKRNMELLDLIQ 140
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 60 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRIVLANAAKQGDTVIVPYQRLIEVQ 119
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WAK G+ DLK L G ++
Sbjct: 120 ERLSSELGHRPSLERWAKTAGIDLADLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAK 179
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 180 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 209
>gi|452821943|gb|EME28967.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 540
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%)
Query: 260 FLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDL 319
++ + +LL+ +EE EL ++ RL + ++ +FGR+ +L EWA G+S +DL
Sbjct: 222 YIHAIDKSRLLSQEEEAELANYLKKQTRLIDIQQRMMQKFGRKLSLEEWAIRAGMSVQDL 281
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQY 348
+ GN+++EKLI ANLRLV +A ++
Sbjct: 282 HDAIILGNNAKEKLITANLRLVHSIASRF 310
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE ++Q IRL + ++K
Sbjct: 56 TDLVRLYLQEIGRVHLLGRDEEVSEAQKVQRYIRLVELRAKAAKNGDEIMVPYEQLMAVQ 115
Query: 295 --LQSQFGREPTL--------IE--------------WAKAIGLSCRDLKSELHSGNSSR 330
L S+ G P+L IE WA+ GL+ ++L+ GN ++
Sbjct: 116 ERLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQSEGNRAK 175
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 176 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 205
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P L WAK +S +LK+ L +G
Sbjct: 104 AQLQQFVKLMEVRDQLIAQLAHCPPLERWAKTAQISVPELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------ 327
A I+ +RL + + +L S+ G P+L WA G+ DLK L +G
Sbjct: 106 AVIEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLSDLKPTLANGKRRWAEIAKLTVE 165
Query: 328 ----------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 166 ELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 95 SIPIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ Q G + E A L+ + L+S L+ G
Sbjct: 101 LLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRV 160
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 161 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 192
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R++L LLTA+EE EL +++ E L E KA G
Sbjct: 70 NDLVRIYLREIGKVPLLTAEEEVEL-------------AKAIEAGLFAEDKLCE-KKAAG 115
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ C +L+ + G ++++LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 116 IECPELEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQ 162
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA + LS DL+ L G +R+++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 137 WAACLDLSLSDLQQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQ 189
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 251 FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
F +DP+R++L LLT DEE +L ++ E++ +L Q RE + A
Sbjct: 167 FAIDDPVRMYLKEIGKVPLLTPDEEVDLAQRMASGAEAERKLKELTGQ--REAG--DPAA 222
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
A LK LHSG ++++KL ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 223 ATKEEEAALKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQ 272
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA EE L Q++ R E+ +LQ ++A +
Sbjct: 103 DDPVRVYLREIGRVNLLTAQEEIMLAQQVE---RGEQASERLQKG--------DYAPSER 151
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L L + G ++RE+LI ANLRLVV +AK+Y GRG+SL DL+Q
Sbjct: 152 LQ---LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQ 195
>gi|124024644|ref|YP_001018951.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
gi|123964930|gb|ABM79686.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9303]
Length = 376
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
DP+RL+L +LLT +EE L +Q +L RLE+ +
Sbjct: 19 TDPVRLYLQDIGRVELLTHEEEVTLARLVQRREALLKQERQLASSQEAIKELQRLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ + PT EWA A GL+ +L K L +G +++
Sbjct: 79 REANHSCHWPTKQEWAMAAGLTLAELQDKIETGYKTWGALTGLDPLELKRSLRAGRRAKD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RGI L DL+Q
Sbjct: 139 QMIQANLRLVVAVAKKYQQRGIELLDLVQ 167
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
DP+RL+L +LLT +EE L +Q +L RLE+ +
Sbjct: 19 TDPVRLYLQDIGRVELLTNEEEVTLARLVQRREALLKQERKLASNQEAIKELQRLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ + PT EWA A GL+ +L K L +G +++
Sbjct: 79 REANHSCHWPTKQEWAMAAGLTLAELQEKIETGYKTWGALTGLDPLELKRSLRAGRRAKD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RGI L DL+Q
Sbjct: 139 QMIQANLRLVVAVAKKYQQRGIELLDLVQ 167
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 59/96 (61%)
Query: 265 ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 324
+ +++L A E E+ ++ L LEK ++ ++ R +L WA+A G+ + L+ LH
Sbjct: 249 KNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLH 308
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++LI + LV+++A++Y+G GI+L DLLQ
Sbjct: 309 RGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQ 344
>gi|302793696|ref|XP_002978613.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
gi|300153962|gb|EFJ20599.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
Length = 458
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
WG + LT+ EE EL+ + + L + +S+L+ REP+ EWA A R L+
Sbjct: 152 WGNLHHRYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATAANTDFRTLRR 211
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQ--GRGISLHDLLQ 360
L G +++ KLI N RLV+ +A++Y+ SL DL Q
Sbjct: 212 RLQLGEAAQNKLIEHNCRLVLFLARRYERDAGSFSLEDLCQ 252
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 25/112 (22%)
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK---------- 320
TAD+E IQ ++L + +L + G P+L WA G++ DLK
Sbjct: 98 TADKE---AGAIQQYVKLIEAHDRLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREW 154
Query: 321 --------SELHS----GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EL + G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 155 AKVAKLSVEELETIQMEGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 50/167 (29%)
Query: 239 RKASVKKK-LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
RK +VKKK +E D +R++L +LL A+EE EL QI DL+ LE + L
Sbjct: 59 RKDAVKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTL 113
Query: 298 QFGREPTLIEWAKAI----------------GLSCRDLKSELHSGNS------------- 328
Q R+P+ +EW K + +D+ S L + ++
Sbjct: 114 QLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPN 173
Query: 329 ---------------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K++ +NLRLVV +AK+Y RG+S DL+Q
Sbjct: 174 KNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 220
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 25/111 (22%)
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN---- 327
A E E++A +L+++++ +L S+ G P+L WA G+ DLK L +G
Sbjct: 127 AKEGDEIVAPFLNLVQVQE---RLTSELGHRPSLERWANTAGIELVDLKPTLANGKRRWA 183
Query: 328 ------------------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 184 EIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 234
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ + L ++ G+ + ++ A + ++ + L+S L+ G
Sbjct: 79 LLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 46/152 (30%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D +R++L +LL A+EE EL +I DL++LE+ + L + +EPT +W K I
Sbjct: 60 DSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQ 119
Query: 313 ---------GLSCRD-----------------------------------LKSELHSGNS 328
S ++ K L+ G
Sbjct: 120 WENIEQMLRAQSSKEKEPKWSEVTDMLQKAEIISDLEKTWKLESKAYLPKFKRRLYLGRK 179
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++K++++NLRLVV +AK+Y RG+S DL+Q
Sbjct: 180 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 13/92 (14%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTA+EE EL +I+ R ++ + +L ++ + G R+L+ E+ GN
Sbjct: 62 LLTANEEVELSERIE---RGDEAEERLATE----------DQLSGTQRRNLEHEVERGND 108
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+R LI ANLRLVV +AK+Y GRG+SL DL+Q
Sbjct: 109 ARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQ 140
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ + +E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 95 TTSTIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|113953359|ref|YP_732042.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
gi|113880710|gb|ABI45668.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
Length = 376
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 66/149 (44%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ----------------- 296
ND LRL+L LLTA++E L +Q RL++E+ +
Sbjct: 19 NDLLRLYLQDIGRVDLLTAEDEVVLSRLVQQYERLKREERQFAEDHPAIERLLCLEELQL 78
Query: 297 ---SQFGREPTLIEWAKA----------------------IGLSCRDLKSELHSGNSSRE 331
+ PT EWA+A I R+L+ L G +R+
Sbjct: 79 REANHLSHWPTRQEWARAAEMPLQELNKGLTQGYETWANLISTDSRELQLRLRRGRKARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 139 RMIQANLRLVVAVAKKYQHRGMELLDLVQ 167
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ +P++ E A + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 84 SSSQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE + Q+Q +RL + +++
Sbjct: 48 TDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHD 107
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSRE 331
L Q G P+ WAK +G + LK L SG +++
Sbjct: 108 QLLVQLGHRPSYERWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKA 167
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 168 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 196
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------ 327
A + +RL + + +L S+ G P+L WA G+ DLK L G
Sbjct: 106 AVVSPYLRLIEVQERLASELGHRPSLERWAATAGVQLSDLKPTLSEGKRRWAEIAKITVE 165
Query: 328 ----------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S+E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 166 ELEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+ +++E+ + ++ +P+ E A+ + LS +K L +G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNLSTSQIKKRLRAGQR 97
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 64/149 (42%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE + Q+Q +RL + +++
Sbjct: 29 TDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHD 88
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSRE 331
L Q G P+ WAK +G + LK L SG +++
Sbjct: 89 QLLVQLGHRPSYERWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKA 148
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 149 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 177
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|325283594|ref|YP_004256135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
gi|324315403|gb|ADY26518.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
Length = 487
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 18/110 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQD--LIRLE-KEKSKLQSQFGREPTLIEWAK 310
NDP+R +L LLT +EE L +I+D R+E +EK + GR
Sbjct: 184 NDPVRQYLHEIGRVPLLTLEEEIALARRIEDGEFARVELEEKGEELDDRGR--------- 234
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L+ + G ++R+ LI ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 235 ------RALQRRMEDGAAARQGLIEANLRLVVSIAKKYTGRGLNFLDLIQ 278
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA LS +LK LH G +R+++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 115 WATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK ++ +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARSAHRPSLERWAKTAQITVSELKNALKAGKQRWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 185 ELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LLTA EE L +Q LI +E ++++ + GR T EWA G S + + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
+R +++ +N RLV HVA++Y RG+ DLL
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLL 100
>gi|260436706|ref|ZP_05790676.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260414580|gb|EEX07876.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 377
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 20 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLLQQRELAESDAAIGELHRLEELQR 79
Query: 294 KLQSQFGREPTLIEWAKAIGL----------------------SCRDLKSELHSGNSSRE 331
+ +Q PT EWA+A GL +D+K L +G +++
Sbjct: 80 REANQHSHWPTKQEWARAAGLPLPDLQQRIELGYQAWAEQAQLEAKDVKLALRNGRRAKD 139
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ + DL+Q
Sbjct: 140 HMIQANLRLVVAVAKKYQQRGMEILDLVQ 168
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +G
Sbjct: 25 DLVRVYLNGIGKTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 70
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +DL + GN++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 ARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|427412602|ref|ZP_18902794.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
gi|425716409|gb|EKU79393.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
Length = 394
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 28/129 (21%)
Query: 232 NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291
++E +++ S+ + EG + +DP+R++L LL+ADEE L QI+
Sbjct: 89 SNEVREAKEVSLDLSIPEGVNIDDPVRMYLKEIGRVPLLSADEEILLAQQIE-------A 141
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
+K + + E+ +G +++KLI+ANLRLVV +AK+Y GR
Sbjct: 142 GAKDDASY---------------------KEMKAGEKAKQKLIDANLRLVVSIAKRYVGR 180
Query: 352 GISLHDLLQ 360
G+ DL+Q
Sbjct: 181 GMLFLDLIQ 189
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
LQS F + WA+ LS +L+ L G +++++INANLRLVV +AK+YQ RG+
Sbjct: 122 LQSGFQK------WAELADLSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRGLD 175
Query: 355 LHDLLQ 360
L DL+Q
Sbjct: 176 LLDLIQ 181
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +G
Sbjct: 25 DLVRVYLNGIGKTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 70
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +DL + GN++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 ARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|94984583|ref|YP_603947.1| RNA polymerase subunit sigma 28 [Deinococcus geothermalis DSM
11300]
gi|94554864|gb|ABF44778.1| RNA polymerase, sigma 28 subunit [Deinococcus geothermalis DSM
11300]
Length = 532
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 12/107 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT +EE L +I++ +E K+ + G E L + A+
Sbjct: 229 NDPVRQYLHEIGRVPLLTLEEEIALARRIEE----GEEARKMLEEAGDE--LDDRAR--- 279
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L ++ G ++R+ LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 280 ---RRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQ 323
>gi|383763158|ref|YP_005442140.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383426|dbj|BAM00243.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 441
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG--REPTLIEWAKAI 312
DP+R++L LLTA+EE EL +I+ + +E EK KLQ FG E L +
Sbjct: 105 DPVRMYLRDIGRHPLLTAEEEMELAEKIR--LGVEAEK-KLQELFGGRSEDELTDEE--- 158
Query: 313 GLSCRD-LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +D L+ +H G + +L +NLRLVV VAK+Y GRG++ DL+Q
Sbjct: 159 -LDQKDELEMLVHQGRMAHSRLAQSNLRLVVSVAKRYIGRGLNFLDLIQ 206
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGR------------------EPTLI----EWAKAIGLSCRDL 319
+Q IRL + +L SQ G +PTL+ WA+ GL+ DL
Sbjct: 114 LQLYIRLIEAHDRLASQLGHRPSLERWAAEAHIALSELKPTLVAGKRSWAEVAGLTVPDL 173
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 174 EQIQKEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 214
>gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 64/101 (63%)
Query: 260 FLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDL 319
++ G ++LLT E +L +I+ + LE++KS+L+ + G EP+ + A ++ +S DL
Sbjct: 190 YINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQLAISLKISRADL 249
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 250 RSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQ 290
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 63/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRTVLAGAAKQGDAVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G+ DLK L G ++
Sbjct: 119 ERLASELGHRPSLERWANTAGVQVSDLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 22/102 (21%)
Query: 281 QIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------- 327
++Q +RL + +L S G P+L WA G DLK L +G
Sbjct: 109 ELQRYVRLVDTRDRLASLLGHRPSLERWAAEAGEQVSDLKPILAAGKRQWAALASLTVEE 168
Query: 328 ---------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 169 LERTQAEGIGAKEHMIEANLRLVVSVAKKYQNRGLELLDLVQ 210
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEE----------FELIAQ-----------IQDLIRLEKEK 292
D +RL+L +LL DEE +L+A ++D + L++ +
Sbjct: 41 TDLIRLYLQDIGRVRLLGRDEEVSEARWVQRYMQLLAVRNCVAVEEGGVLKDYVDLQEGR 100
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELH----------------------SGNSSR 330
+L +Q G P+ WAK + S +L+ L G ++
Sbjct: 101 DRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEELKQVCKEGQRAK 160
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 161 DHMIKANLRLVVSVAKKYQNRGLELLDLVQ 190
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 57/94 (60%)
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
++L+ A E E+ ++ + LE+ ++ L+ + G +L WA+A G+ + L+ +L G
Sbjct: 261 KRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFG 320
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R++L+ + LV+++A+ Y+G G++ D+LQ
Sbjct: 321 WYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQ 354
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL------------------ 323
I+ I L + + +L S+ G P+L WA + G+S +LK L
Sbjct: 108 IKTYITLIEAQERLTSELGHRPSLERWAASAGISVMELKPALAVGKRRWAEIAKITVEEL 167
Query: 324 ----HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 168 EQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEE----------FELIAQ-----------IQDLIRLEKEK 292
D +RL+L +LL DEE +L+A ++D + L++ +
Sbjct: 41 TDLIRLYLQDIGRVRLLGRDEEVSEARWVQRYMQLLAVRNCVAVEEGGVLKDYVDLQEGR 100
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELH----------------------SGNSSR 330
+L +Q G P+ WAK + S +L+ L G ++
Sbjct: 101 DRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEELKQVCKEGQRAK 160
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 161 DHMIKANLRLVVSVAKKYQNRGLELLDLVQ 190
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 22/97 (22%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------ 327
+RL + + +L S+ G P+L WA G+ DLK L +G
Sbjct: 108 LRLIEVQERLSSELGHRPSLERWATTAGIELPDLKPTLANGKRRWAETAKLTVEELDQVQ 167
Query: 328 ----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 168 SQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 204
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA + L +++++ L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 136 WAACVDLDIKEIEAVLKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 188
>gi|159901184|ref|YP_001547431.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159894223|gb|ABX07303.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 375
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 34/124 (27%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD----LIRLEK------EKSKLQ 296
+ EG +DP+R++L LLTA EE L Q++ +IRL + EK++LQ
Sbjct: 69 IREGVSLDDPVRMYLREIGQVHLLTAHEETMLAKQLERGERAMIRLARHEYLLEEKARLQ 128
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q L+SE ++R+ LI ANLRLVV +AK+Y GRG+S
Sbjct: 129 QQV-------------------LESE-----AARQHLIQANLRLVVSIAKKYVGRGMSFL 164
Query: 357 DLLQ 360
DL+Q
Sbjct: 165 DLIQ 168
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 50/78 (64%)
Query: 283 QDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342
Q+ I++E + + Q GREPT EWA+A+ + ++L+ +L R ++++NL LV+
Sbjct: 1 QEHIKMEALFTSMSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVI 60
Query: 343 HVAKQYQGRGISLHDLLQ 360
VA+++ +G ++ DL+Q
Sbjct: 61 KVARKFGLKGTTIEDLIQ 78
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 57/94 (60%)
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
++L+ A E E+ ++ + LE+ ++ L+ + G +L WA+A G+ + L+ +L G
Sbjct: 311 KRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFG 370
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R++L+ + LV+++A+ Y+G G++ D+LQ
Sbjct: 371 WYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQ 404
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 47/190 (24%)
Query: 176 EAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHET 235
E A LAE+ L+ EF ++ L P +E+ V + E
Sbjct: 90 EIADLAEDEVLDEDEFDEVDALGDLDEPEDEL----------------------VRDREE 127
Query: 236 YNSR-KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD----LIRLEK 290
+R +A +LS NDP+R +L LLT +EE L +I++ RL++
Sbjct: 128 IEARAEAMAGSRLST----NDPVRQYLHEIGRVSLLTLEEEISLARRIEEGEAAQKRLDE 183
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
E L + R LK + G +R+ LI ANLRLVV +AK+Y G
Sbjct: 184 EGDSLPER----------------EQRALKRIVEDGEMARQHLIEANLRLVVSIAKKYTG 227
Query: 351 RGISLHDLLQ 360
RG+S DL+Q
Sbjct: 228 RGLSFLDLIQ 237
>gi|87125501|ref|ZP_01081346.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86166801|gb|EAQ68063.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 312
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 16/122 (13%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
AS+ L+E R +DP+ +L LLT EE EL Q+Q+++RL ++ +
Sbjct: 2 ASLAAGLAESQRRRSSDPISWYLATIGRIPLLTPAEEIELGNQVQEMMRLTEDGTLAPDH 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G S D + + G ++E+++ ANLRLVV VAK+YQG+G+ L DL
Sbjct: 62 DG-------------FSSHD-RRMIRVGKRAKERMMKANLRLVVSVAKKYQGKGLELLDL 107
Query: 359 LQ 360
+Q
Sbjct: 108 IQ 109
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 85 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRVVLANAAKQGDEIIAPYLRIIEAQ 144
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSEL----------------------HSGNSSR 330
+L S+ G P++ WA G+ +LK L SG S+
Sbjct: 145 ERLASELGHRPSMERWASTAGVDVFELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSK 204
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 205 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 234
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRVVLANAAKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 15/108 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + A+ +
Sbjct: 93 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFAAEK--LSEARRVT 138
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ R DL++ GN ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 139 VALRVDLEAVERDGNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|67925817|ref|ZP_00519113.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
gi|67852341|gb|EAM47804.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
Length = 386
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
K IG+S R+L+ L G ++EK+I ANLRLVV V+K+YQG+G+ DL+
Sbjct: 2 LGKEIGISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLV 53
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 62/150 (41%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L +LL DEE ++Q +RL ++K
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMRLLDLRAKFATPEEPVIEHFVHLIETH 118
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
L SQ G P+L WA G+ LK L G ++
Sbjct: 119 DRLASQLGHRPSLERWATTAGVDVATLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLIQ 208
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 39/145 (26%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQ 360
+NLRLVV +AK+Y RG+S DL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 27/135 (20%)
Query: 237 NSRKASVKKKLSEG----FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ-------DL 285
+SR + V+++ S+G DP+R++L LLTA EE +L +I+ +L
Sbjct: 58 SSRASKVRRRSSDGSSAVMLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATAEL 117
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
R E E +L + R T +E A+GL + ++LI ANLRLVV +A
Sbjct: 118 ERAEDEGIELNRRDKRRLTRVE---AVGLDAK-------------QQLIEANLRLVVSIA 161
Query: 346 KQYQGRGISLHDLLQ 360
K+Y GRG+ DL+Q
Sbjct: 162 KRYVGRGMLFLDLIQ 176
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +R+ + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRMRIVLSNAAKQGDEILIPYLRVIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P++ WA A G+ +LK L G S+
Sbjct: 119 ERLASELGHRPSIERWASAAGVEVLELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|78214100|ref|YP_382879.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78198559|gb|ABB36324.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 377
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 66/149 (44%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 20 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLSQQQKLAESDAAIGELHRLEELQR 79
Query: 294 KLQSQFGREPTLIEWAKAIGL----------------------SCRDLKSELHSGNSSRE 331
+ +Q PT EWA+A L +DLK L +G +++
Sbjct: 80 REANQHSHWPTKQEWARAADLPLPELQQRIDRGYQAWAEQAQLEAKDLKLALRNGRRAKD 139
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ + DL+Q
Sbjct: 140 HMIQANLRLVVAVAKKYQQRGMEILDLVQ 168
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR---------------------LEKEK 292
D +RL+L +LL DEE ++Q +R L + +
Sbjct: 54 TDLVRLYLQEIGRVRLLGRDEEVAEAQKVQRYLRMRLMLSAAAAEGDAVIIPYSRLMEVQ 113
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L+++ G P+L WA G+S DLK L +G ++
Sbjct: 114 ERLKAELGHRPSLERWATTAGISLPDLKPTLANGKRRWAEIANLTVEELEQVQTQGLQAK 173
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 174 SHMIKANLRLVVSVAKKYQNRGLELLDLVQ 203
>gi|392946711|ref|ZP_10312353.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392290005|gb|EIV96029.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 422
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 37/45 (82%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRDL + G++++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 172 CRDLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRIVLANAAKQGDEVIVPYQRLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G+ +LK L G ++
Sbjct: 119 ERLSSELGHRPSLERWATTAGIELSNLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +
Sbjct: 32 DLVRVYLNGIGRTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLSA 77
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S RDL + G ++R+ L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 78 SKKRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 124
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 269 LLTADEEF-ELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
LL EEF E I + RL + +L + G P+ WAK + DLK L G
Sbjct: 101 LLETREEFLESHPVIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGK 160
Query: 328 SS----------------------REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 161 TAWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 215
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 269 LLTADEEFELIAQIQD--LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
LLTADEE L +Q+ L+ E+ KL++ G P+L WA ++ LS R L+ +L
Sbjct: 27 LLTADEEISLGRAVQNGRLLLEAAEELKLRA-GGEAPSLEAWASSVNLSPRQLQRQLRLA 85
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ E+++ ANLRLVV +A++ R + L DL+Q
Sbjct: 86 ERASEQMVTANLRLVVSLARRISHRRLDLDDLIQ 119
>gi|395236960|ref|ZP_10415090.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|394487844|emb|CCI83178.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 339
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTAD+E EL QI+ + E + R AK
Sbjct: 40 DLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHDEPLTR-------AKK--- 89
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 90 --RDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 133
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 42/146 (28%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL--------------------Q 296
+RL+L LLTA++E L +Q RL++E+ +
Sbjct: 1 MRLYLQDIGRVDLLTAEDEVVLSRLVQQYERLKREERQFAEDHPAIERLLCLEELQLREA 60
Query: 297 SQFGREPTLIEWAKA----------------------IGLSCRDLKSELHSGNSSREKLI 334
+ PT EWA+A I RDL+ L G +R+++I
Sbjct: 61 NHLSHWPTRQEWARAAEMPLQELNLALTEGYQTWADLITSDSRDLQRRLREGRKARDRMI 120
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQ 360
ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 121 QANLRLVVAVAKKYQHRGMELLDLVQ 146
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L +LLTA+EE +L +I+ + KL + P L
Sbjct: 101 SDPVRMYLKAIGRVRLLTAEEEVDLAKRIEAGL---FASEKLAAIRRTSPRL-------- 149
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 150 --RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQ 194
>gi|423350097|ref|ZP_17327750.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|404387959|gb|EJZ83050.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 329
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTAD+E EL QI+ + E + R AK
Sbjct: 30 DLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHDEPLTR-------AKK--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 80 --RDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 ARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 ARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|15807631|ref|NP_294640.1| RNA polymerase sigma-A factor [Deinococcus radiodurans R1]
Length = 360
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT +EE L +I+ E + + Q + +L + ++
Sbjct: 58 NDPVRQYLHEIGRVSLLTLEEEIALARRIE-------EGEEARKQLEEDESLDDRSR--- 107
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L ++ G ++R+ LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 108 ---RRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQ 151
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ----------------- 296
D +RL+L +LL DEE ++Q +RL + + ++Q
Sbjct: 99 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYMRLVELRDQVQADHQPIQQYVHLIDIHD 158
Query: 297 ---SQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
+Q G P L WA+ G+ LK+ L G ++E
Sbjct: 159 RLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAIGMMVGELDQIQKEGVRAKE 218
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 219 HMIQANLRLVVSVAKKYQNRGLELLDLIQ 247
>gi|307152083|ref|YP_003887467.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982311|gb|ADN14192.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 418
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS------------- 328
I++ + L +++ +L SQ G P+L A A ++ +LK L+ G
Sbjct: 110 IKNFVSLIEKRDQLTSQLGHRPSLERLADAAEITVFELKKTLYEGKRHWAELANLEVQEL 169
Query: 329 ---------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 170 ERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQ 210
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+ K +G
Sbjct: 31 DLVRVYLNGIGKTALLTAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 76
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 77 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 58/97 (59%)
Query: 265 ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 324
+ ++ + A E E+ ++ L LEK ++ ++ + +L WA+ G+ + L+ +L+
Sbjct: 252 KNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLY 311
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQI 361
G R++LI + LV++ A++Y+G GI+L DLLQ+
Sbjct: 312 HGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQV 348
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
+EG ND +RL+L LL ++E EL ++D + ++E LIE
Sbjct: 94 NEGISVNDTVRLYLREIGLVPLLKGEQEVELARAMEDGDKAQQE-------------LIE 140
Query: 308 WAKAIGLSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R L+ + G +RE L ANLRLVV VAK+Y GRG+SL DL+Q
Sbjct: 141 NDHTLSDVERLALRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQ 194
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEF---ELIAQIQDLIRLE------------------KEK 292
D +R++L +LL DEE + + + Q LI+L + +
Sbjct: 47 TDLVRVYLQEIGRVRLLGRDEEVAEAQKVQRYQRLIQLRDKAAAEEKGILETFAMLLQTR 106
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
S+L +Q G P+L WA G+ DLK + +G ++
Sbjct: 107 SRLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKAK 166
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 167 DHMIKANLRLVVSVAKKYQNRGLELLDLIQ 196
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL +EE Q+Q ++L ++K
Sbjct: 50 TDLVRLYLQDIGRVPLLGKEEEVAKAQQVQRYVQLINLRTKAAKNGNAAIARFVEIVDTH 109
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSEL----------------------HSGNSSR 330
L SQ G P+L WA A+ ++ +LK L +G ++
Sbjct: 110 DRLVSQLGLRPSLERWAAAVKMNVFELKQALTEGKRHWAEIAGMDVQELDRIQKAGIRAK 169
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 170 EHMIEANLRLVVSVAKKYQNRGLELLDLIQ 199
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS------------ 329
I + RL + +L + G P+ WAK + DLK L G ++
Sbjct: 115 IAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKTAWAEKAELSNAEL 174
Query: 330 ----------REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 175 DQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 215
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLTAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|317969130|ref|ZP_07970520.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CB0205]
Length = 309
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 18/106 (16%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+ +L LLT EE EL Q+Q ++RL +E G T E
Sbjct: 18 DPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLAEEDK------GEAYTTHE------- 64
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G S+E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 65 -----KKIMRVGKRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 105
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 306 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ WAK GL+ ++L+ G +R ++I+ NLRLVV +AK+YQ RG+ L DL+Q
Sbjct: 148 LRWAKLTGLNVKELEQIQTEGIEARHQMISTNLRLVVSIAKKYQNRGVELLDLIQ 202
>gi|116071891|ref|ZP_01469159.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
gi|116065514|gb|EAU71272.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
Length = 355
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 42/146 (28%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKSKLQ 296
+RL+L LLT++EE L +Q +L RLE+ + +
Sbjct: 1 MRLYLQDIGRVDLLTSEEEVTLARLVQRRETLLKQQRELSDTNPAIGELHRLEELQRREA 60
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSE----------------------LHSGNSSREKLI 334
+ PT EWA+A GLS ++L+S L +G +++ +I
Sbjct: 61 NHHSHWPTKQEWARAAGLSLQELQSRIDAGYVAWAEQAAIEAKELKLSLRNGRRAKDHMI 120
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQ 360
ANLRLVV VAK+YQ RG+ + DL+Q
Sbjct: 121 QANLRLVVAVAKKYQQRGMEILDLVQ 146
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 47/178 (26%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDR---NDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+ ET +RK S ++ + D +R++L +LL A+EE EL +I DL+
Sbjct: 32 IVEPETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLL 91
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAI----GLSCR------------------------- 317
+LE+ + L + +EP +W I + R
Sbjct: 92 QLERIREALWEELDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIIS 151
Query: 318 DL---------------KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
DL K L+ G +++K++++NLRLVV +AK+Y RG+S DL+Q
Sbjct: 152 DLEKTWKQQSKAYLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 209
>gi|342213895|ref|ZP_08706614.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
gi|341597483|gb|EGS40042.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
Length = 410
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 28/135 (20%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S + E ++ ++ + EG + +DP+R++L LL+ DEE L QI
Sbjct: 99 SDIDIATEEDDEEKEINLDLSIPEGMNIDDPVRMYLKEIGRVPLLSGDEEIILAQQI--- 155
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
E G + + E+ G+S+++KLI+ANLRLVV +A
Sbjct: 156 ---------------------EAGNQEGATYK----EVRLGSSAKQKLIDANLRLVVSIA 190
Query: 346 KQYQGRGISLHDLLQ 360
K+Y GRG+ DL+Q
Sbjct: 191 KRYVGRGMLFLDLIQ 205
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETGKRLSA 69
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 70 ARKRDLAVIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|300781025|ref|ZP_07090879.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
gi|300532732|gb|EFK53793.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
Length = 330
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A+EE EL QI+ L +Q + E +A
Sbjct: 31 DLVRVYLNGIGKTALLNAEEEVELAQQIE---------VGLYAQHLLDDPDTELTRA--- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 KSRDLKILAKQGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 124
>gi|21466008|pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
gi|21466014|pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 21/125 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQD---LIRLEKEKSKLQSQFGREPTLIEWAK 310
+DP+R +L LLT +EE +L ++++ I+ E + L + RE + AK
Sbjct: 2 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIRE---VVRAK 58
Query: 311 AIGLSC------------RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISL 355
+G + ++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S
Sbjct: 59 ILGTARVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSF 118
Query: 356 HDLLQ 360
DL+Q
Sbjct: 119 LDLIQ 123
>gi|417749572|ref|ZP_12397964.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 319
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G + LL A E EL +I+ + E L+E K +G
Sbjct: 21 DLVRVYLNGIGKKALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 17/109 (15%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--DLIRLEKEKSKLQSQFGREPTLIEWAKA 311
+DP+R++L LLTA++E EL ++ D+ R ++ + S GRE +E A A
Sbjct: 92 DDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYTS--GRERMELERAYA 149
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G C SR+ LI ANLRLVV +AK+Y G+++ DL+Q
Sbjct: 150 LG--C-----------ESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQ 185
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 319
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLNTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 SRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|297737220|emb|CBI26421.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 219 RSKKRKVSKPQVTNHETYNSRKASV-----KKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R K+R+V+ + + S + V K ++ + L+ ++ G + +LLT
Sbjct: 197 RQKRREVTCSGTSARQRRISGRKRVMNEKSKSRVRAALGVENRLKGYVKGVVSEELLTHA 256
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
+ L +I+ + LE KS+L+ + G EPT + A ++ +S +L+S+L + +REKL
Sbjct: 257 QVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKL 316
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+N+RLV+ +A++Y G + DL+Q
Sbjct: 317 AMSNVRLVMSIAQRYDNMGAEMADLVQ 343
>gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [Corynebacterium jeikeium K411]
gi|260578869|ref|ZP_05846775.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
gi|68263770|emb|CAI37258.1| RNA polymerase sigma factor B [Corynebacterium jeikeium K411]
gi|258603016|gb|EEW16287.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
Length = 343
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ L S++ L K
Sbjct: 45 DLVRVYLNGIGKTALLTAEDEVELSKRIE---------VGLYSEY----LLSNAEKLTRA 91
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 92 KKRDLKVLAREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 137
>gi|312195044|ref|YP_004015105.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226380|gb|ADP79235.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 424
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LL A +E EL +++ + E KL + EP L
Sbjct: 126 DLVRMYLREIGRVPLLNAAQEVELSKRVEAGLFAEH---KLATAADLEPEL--------- 173
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 174 -HRDLKLLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 218
>gi|318042101|ref|ZP_07974057.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 309
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 18/107 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++RL +E EP G
Sbjct: 17 SDPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLTEE----------EP-------ENG 59
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + K+ + G S+E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 60 YTDQQKKT-IRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 105
>gi|429218921|ref|YP_007180565.1| sigma-70 family RNA polymerase sigma factor [Deinococcus
peraridilitoris DSM 19664]
gi|429129784|gb|AFZ66799.1| RNA polymerase sigma factor, sigma-70 family [Deinococcus
peraridilitoris DSM 19664]
Length = 489
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT EE L +I++ E+ ++KL++ L + A+
Sbjct: 186 NDPVRQYLHEIGRVPLLTLAEEISLARRIEEG---EEARAKLEADL----DLDDRAR--- 235
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L+ ++ G ++R+ LI ANLRLVV +AK+Y RG+ DL+Q
Sbjct: 236 ---RSLQRQVEDGQAARQGLIEANLRLVVSIAKKYSNRGMGFLDLIQ 279
>gi|428769135|ref|YP_007160925.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
gi|428683414|gb|AFZ52881.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
Length = 399
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA + +L++ L +G +++K+INANLRLVV +AK+YQ RG+ L DL+Q
Sbjct: 139 WANLAQVKLSELETILANGIKAKQKMINANLRLVVSIAKKYQNRGLELLDLIQ 191
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+ +L S+ G P+L WA G+ DLK L G +
Sbjct: 131 QERLVSELGHRPSLERWASTAGIKLMDLKPTLSEGKRRWGEIAQLTVEELDEIQSQGIQA 190
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 191 KEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 221
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP--T 304
+ + F +DP+R++L LL++DEE EL + +++ ++LQ P
Sbjct: 136 MVDSFGTDDPVRMYLKEIGKVNLLSSDEEIELAQAMGAGAEAKEQLAELQESGEEIPAEV 195
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L E KAI G ++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 196 LAELNKAI-----------KRGERAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQ 240
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 58/94 (61%)
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
R+ + A E E+ I+ + +LEK K L+ + G+ +L WA+A G+ + L+ +LH G
Sbjct: 249 RRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFG 308
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R++L+ + LV+++++ Y+G G++ DL+Q
Sbjct: 309 WYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQ 342
>gi|254527154|ref|ZP_05139206.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538578|gb|EEE41031.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 313
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKINEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|378717650|ref|YP_005282539.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
gi|375752353|gb|AFA73173.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
Length = 339
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T ++R A ++ L D +R++L G LL A++E EL QI+ +
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---------AG 71
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L ++ L + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+
Sbjct: 72 LYAKH----VLATRKRLSAAKKRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 127
Query: 355 LHDLLQ 360
L DL+Q
Sbjct: 128 LLDLIQ 133
>gi|359767854|ref|ZP_09271636.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
gi|359314770|dbj|GAB24469.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
Length = 339
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T ++R A ++ L D +R++L G LL A++E EL QI+ +
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---------AG 71
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L ++ L + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+
Sbjct: 72 LYAKH----VLATRKRLSAAKKRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 127
Query: 355 LHDLLQ 360
L DL+Q
Sbjct: 128 LLDLIQ 133
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETGKRLSA 69
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 70 TRKRDLALIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q+ L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQY-----LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R+L + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRELAMVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|319948428|ref|ZP_08022566.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
gi|319437910|gb|EFV92892.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
Length = 322
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL +I+ + L ++ L+E K +G
Sbjct: 24 DLVRVYLNGIGKTALLNAEDEVELSKRIE---------AGLYAKH-----LLETKKRLGP 69
Query: 315 SCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + DLK+ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 70 AKKADLKTIVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A EE EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLDAAEEVELAKRIE---------AGLYAQH-----LLKTKKRLGQ 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLEAIVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|123969020|ref|YP_001009878.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199130|gb|ABM70771.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 313
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKVNEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 62 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRILLSEAASKGDELLAHYLKIIEAQ 121
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P++ WA G+ +LK L G ++
Sbjct: 122 ERLTSELGHRPSMKRWANTAGIEESELKGALSQGKRRWAETAKLTVQELEQIQTQGLQAK 181
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 182 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 211
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +++ ++ +++ L+ + E +
Sbjct: 302 DDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSEEDMMNLE 361
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LK++ G +++KL ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 362 AQIKILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQ 408
>gi|269956779|ref|YP_003326568.1| RpoD subfamily RNA polymerase sigma-70 subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269305460|gb|ACZ31010.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Xylanimonas
cellulosilytica DSM 15894]
Length = 549
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LL A++E EL +I+ + E++ SK + F R + + +
Sbjct: 242 DPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEEKLSKDFADFDRTKADADTRRLV-- 299
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ H G ++ L+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 300 --RDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 343
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 22/98 (22%)
Query: 285 LIRLEKEKSKLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSE 322
+ L +++ +L SQ G P+L +WA A GL ++L+
Sbjct: 113 FVNLVEKRDQLTSQLGHRPSLEKWADAAEVSVFEVKQILNEGKRHWANLAGLKVQELEQI 172
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G ++ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 173 QKAGIEAKNHMIKANLRLVVSVAKRYQNRGLELLDLIQ 210
>gi|224110206|ref|XP_002333134.1| predicted protein [Populus trichocarpa]
gi|222834948|gb|EEE73397.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
+LT+ E L +Q + L + K LQ G EPT +E AKAI + ++ ++ G +
Sbjct: 216 VLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTDVELAKAINMDVLQVRKQIAVGRA 275
Query: 329 SREKLINANLRLVVHVAKQY 348
+R KLI NLRLV+ V K+Y
Sbjct: 276 ARNKLIKHNLRLVLFVIKKY 295
>gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [Mycobacterium vanbaalenii PYR-1]
gi|119956259|gb|ABM13264.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 329
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 31 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTRKRLGE 76
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 77 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|385678070|ref|ZP_10051998.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 306
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 251 FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
F+ DP+R +L G LLT +EE L +I+ + L +Q L+ +
Sbjct: 6 FEPADPVRAYLTGISRAGLLTIEEEVTLAKRIE---------AGLYAQH-----LLATTR 51
Query: 311 AIGLSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R DL + G ++ +L+ ANLRLVV +AK+Y GRG+SL DL+Q
Sbjct: 52 VLDPQRRADLLTIAEEGREAKNRLLEANLRLVVSIAKRYTGRGMSLLDLIQ 102
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELHS 325
LLT ++E Q+Q + L K +L+ PT I +WA+A+ L+ +L+ L
Sbjct: 29 LLTHEQEVLYGKQVQQMKMLLARKVELEE---INPTSISQADWAQAVELTESELEQALVQ 85
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++ K+I ANLRLVV VAKQY R + L DL+Q
Sbjct: 86 GQRAKNKMIQANLRLVVSVAKQYLRRNMELLDLIQ 120
>gi|226356403|ref|YP_002786143.1| sigma-70 family RNA polymerase sigma factor [Deinococcus deserti
VCD115]
gi|226318393|gb|ACO46389.1| putative RNA polymerase sigma factor, sigma-70 family [Deinococcus
deserti VCD115]
Length = 547
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT +EE L +I++ +E KL L E +
Sbjct: 245 NDPVRQYLHEIGRVSLLTLEEEIALARRIEE----GEEARKL---------LEEDVELDD 291
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L ++ G ++R+ LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 292 RGRRRLMRQMEDGANARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQ 338
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+ +L S+ G P+L WA G+ DLK L G +
Sbjct: 134 QERLVSELGHRPSLERWASTAGIKLVDLKPTLSEGKRRWAEIAKLTVEELDQIQSQGIQA 193
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 194 KEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 224
>gi|218248849|ref|YP_002374220.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257061911|ref|YP_003139799.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218169327|gb|ACK68064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256592077|gb|ACV02964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 417
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS------------- 328
IQ LI + + +L G P+ WAKA +S +LK+ L G
Sbjct: 109 IQQLIEMAEIHDRLFISLGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQL 168
Query: 329 ---------SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 169 ETIEKVGIRAKEQMIKANLRLVVSVAKKYQHRGLELLDLIQ 209
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|302810520|ref|XP_002986951.1| hypothetical protein SELMODRAFT_43614 [Selaginella moellendorffii]
gi|300145356|gb|EFJ12033.1| hypothetical protein SELMODRAFT_43614 [Selaginella moellendorffii]
Length = 326
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
W R LT EE L + RL++ + K REP+ EWAK +S + L+
Sbjct: 21 WDKLPRLRLTGPEEVRLAWFMAPAKRLQQVRLKFFEHLKREPSEEEWAKVAEMSVQTLRR 80
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQY 348
L SG ++R K+I NLRLV H A++Y
Sbjct: 81 LLQSGQAARNKMIKHNLRLVAHQARKY 107
>gi|157413850|ref|YP_001484716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388425|gb|ABV51130.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 313
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKIKEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|409358553|ref|ZP_11236916.1| RNA polymerase sigma factor SigB [Dietzia alimentaria 72]
Length = 322
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LL A++E EL +I+ + L +Q ++ K IG
Sbjct: 24 DLVRVYLNGIGKTALLKAEDEVELSKRIE---------AGLYAQH-----ILATKKRIGP 69
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ DLK+ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 70 VRKSDLKAVVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|407960226|dbj|BAM53466.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BEST7613]
Length = 228
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 50/164 (30%)
Query: 239 RKASVKKK-LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
RK +VKKK +E D +R++L +LL A+EE EL QI DL+ LE + L
Sbjct: 59 RKDAVKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTL 113
Query: 298 QFGREPTLIEWAKAI----------------GLSCRDLKSELHSGNS------------- 328
Q R+P+ +EW K + +D+ S L + ++
Sbjct: 114 QLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPN 173
Query: 329 ---------------SREKLINANLRLVVHVAKQYQGRGISLHD 357
+++K++ +NLRLVV +AK+Y RG+S D
Sbjct: 174 KNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 217
>gi|225377779|ref|ZP_03755000.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
gi|225210363|gb|EEG92717.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
Length = 426
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G DP+R++L LL+A+EE EL ++ +++ + L+S+ E E
Sbjct: 111 DGVSIEDPVRMYLKEIGKVPLLSAEEEIELAKNMEAGAVAKEKIAILKSR--EEKATEEE 168
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
I ++L+ +L +G+ ++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 169 LAEIKEEIKNLQKDLDAGDEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 220
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL ++++ E L K
Sbjct: 123 DLVRVYLNGIGRTPLLTAADEVEL-------------SQRIEAGLYAEHLLDSGEKLTRA 169
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 170 RKRDLKVLVREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 215
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL----------------------SCRDL 319
+Q+ + L +L SQ P+L WA+ +G+ S ++L
Sbjct: 108 LQEFVELIDAHDRLVSQLSHRPSLRRWAQTVGMEIPLLKERLSVGKHRWAEVVNCSVKEL 167
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 168 ERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 208
>gi|78185087|ref|YP_377522.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|116072338|ref|ZP_01469605.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|78169381|gb|ABB26478.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
gi|116064860|gb|EAU70619.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 313
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 22/111 (19%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLTA EE EL Q+Q ++ ++ SK
Sbjct: 17 SDPVSWYLSTIGRIPLLTAAEEIELGNQVQAMMAFTEDGSK------------------D 58
Query: 314 LSCRDLKSE----LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
DL ++ L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 59 FKVEDLTTKQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|359489968|ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
vinifera]
Length = 497
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 219 RSKKRKVSKPQVTNHETYNSRKASV-----KKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R K+R+V+ + + S + V K ++ + L+ ++ G + +LLT
Sbjct: 139 RQKRREVTCSGTSARQRRISGRKRVMNEKSKSRVRAALGVENRLKGYVKGVVSEELLTHA 198
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
+ L +I+ + LE KS+L+ + G EPT + A ++ +S +L+S+L + +REKL
Sbjct: 199 QVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKL 258
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+N+RLV+ +A++Y G + DL+Q
Sbjct: 259 AMSNVRLVMSIAQRYDNMGAEMADLVQ 285
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 42/149 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL--------------------IAQIQDLIRLEKEKS 293
ND LRL+L LLT++EE L IA I+ L+ LE+ +
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSELHSGNSSRE 331
+ + PT EWA+A GL ++L+ L G +R+
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|451944386|ref|YP_007465022.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903773|gb|AGF72660.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 329
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L + S+ EP + AK
Sbjct: 30 DLVRVYLNGIGKTALLTAEDEVELAQRIE--VGLYADYLLKNSE---EP--LTRAKK--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK GN +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 80 --RDLKVLAKEGNKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 36/44 (81%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 173 RDLKQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|359419322|ref|ZP_09211280.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
gi|358244729|dbj|GAB09349.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
Length = 321
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LL A++E EL QI+ + L ++ ++ K IG
Sbjct: 23 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH-----VLATRKRIGP 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 69 VRKRDLNQIVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 115
>gi|227504896|ref|ZP_03934945.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
gi|227198489|gb|EEI78537.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
Length = 337
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL +I+ L +++ L K
Sbjct: 39 DLVRVYLNGIGKTALLSAEDEVELAQRIE---------VGLYAEY----KLANAEKITRA 85
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 86 EKRDLKILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 16/120 (13%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ----SQFGRE 302
L + F +DP+R++L LL DEE +L QD+ + K+++ ++ E
Sbjct: 126 LVDSFGIDDPVRMYLKEIGKVNLLNPDEEVQLA---QDMGAGDAAKARMAEIEAAEKRGE 182
Query: 303 PTLI--EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
P ++ E KA LK ++ G +++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 183 PIVLTPEEEKA-------LKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 235
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 23/114 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ-------DLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +I+ +L R E E +L + R T +
Sbjct: 90 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRV 149
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E A+GL + ++LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 150 E---AVGLDAK-------------QQLIEANLRLVVSIAKRYVGRGMLFLDLIQ 187
>gi|218442621|ref|YP_002380941.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
gi|218174979|gb|ACK73711.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
Length = 308
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL + +E +L +IQ +L+ + + Q + G++ ++ ++ L + G
Sbjct: 23 LLNSSQEIDLGQKIQKWQKLKHQFVQFQKKTGKKTSVFDFCSDFQLEEAEFYLVYEEGQQ 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +L+ NLRLV+++AK+Y GRG+S DLLQ
Sbjct: 83 AKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQ 114
>gi|336179421|ref|YP_004584796.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334860401|gb|AEH10875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 425
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 38/44 (86%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ + G++++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 176 RDLQTLVRDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 219
>gi|242089059|ref|XP_002440362.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
gi|241945647|gb|EES18792.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
Length = 529
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
R+ + E+ L+A I++ LEK + K+ + G+E + WA+A G+ +L S L +G
Sbjct: 226 RRRIIVREQSALLATIKECASLEKIREKMVKE-GQEVSYHRWAEAAGMDEAELMSRLQTG 284
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RE+L+ LV +A+ Y G G +L DLLQ
Sbjct: 285 YCCRERLLVTTEWLVRCIARSYTGMGTALDDLLQ 318
>gi|161899381|ref|XP_001712917.1| sigma 2 transcription factor [Bigelowiella natans]
gi|75756411|gb|ABA27305.1| sigma 2 transcription factor [Bigelowiella natans]
Length = 389
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 30/183 (16%)
Query: 191 FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKAS----VKKK 246
+ S+T Y ++ + ++SQP K +SK Y +RKAS K
Sbjct: 14 LNNTSMTLENNYNIKNINRYSQPL-------KNSISKA-------YENRKASSVNNYKNN 59
Query: 247 LSEGFDRNDPLRLFLWGPETRKLL----------TADEEFELIAQIQDLIRLEKEKSKLQ 296
L FD+ + F + E K T+ E ++ ++DL+R E KL+
Sbjct: 60 LDNLFDK--QIVDFSYIDELNKKKINLKHKNKNNTSTNESIIMEWVKDLLRWEDLFLKLE 117
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
++ G PT+ + K I ++K L G S+E LI +L+L++ +AK+Y G G+S
Sbjct: 118 NKLGFYPTIDFFTKGIIDLTSEIKERLAIGKISKEILIKRSLKLIISIAKRYNGCGLSFE 177
Query: 357 DLL 359
DL+
Sbjct: 178 DLI 180
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L + ++E K +
Sbjct: 25 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAAH-----VLETGKRLSA 70
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 SKKRDLAAIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL----EKEKSKLQSQFGREPTL--IE 307
D +R +L LL+ ++E L Q+Q ++ L E+ +KL G E + +
Sbjct: 73 TDAVRSYLHEIGRVPLLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNAD 132
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA A + +L + G S+ K+I ANLRLVV VAK+YQ R + DL+Q
Sbjct: 133 WAAAASIPESELDHHMRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQ 185
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLNTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---KEKSKLQSQFGREPTLIEWAKA 311
D +R++L G LLTA +E EL I+ + E K L Q RE
Sbjct: 79 DLVRVYLNGIGRTALLTAADEVELAKSIEAGLYAEHLLKTSDNLTPQRRRE--------- 129
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LK+ G ++R L+ ANLRLVV +AK+Y GRGI L DL+Q
Sbjct: 130 -------LKTVARDGQAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQ 171
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 49/114 (42%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTADEE EL
Sbjct: 149 LLEGVGTEDPVRMYLKEIGTVPLLTADEELELA--------------------------- 181
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + ++EKLI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 182 -------------KRKTEGDIVAKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQ 222
>gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397283|gb|AAS05143.1| SigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 332
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 34 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 79
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 80 NRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + + L + +
Sbjct: 31 DLVRVYLNGIGRTALLNAEQEVELAKQIE-------------TGLYAKHVLATRKRLSAV 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 78 KKRDLAQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|126696812|ref|YP_001091698.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126543855|gb|ABO18097.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 313
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKTNEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 245 KKLSEGFDRNDP----LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
++L E D P +R++L G LLTA++E L I+ + E + + G
Sbjct: 36 ERLQEDLDTQSPAADLVRVYLNGIGRTALLTAEDEVTLAKSIEAGLYAEH---LINTSEG 92
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
P R+LK+ + G ++R L+ ANLRLVV +AK+Y GRGI L DL+Q
Sbjct: 93 LTPQ----------RRRELKAVVRDGRAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQ 142
>gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893958|gb|EFG73726.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 329
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 31 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 76
Query: 315 SCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R DL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 77 NRRRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|441508327|ref|ZP_20990251.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
gi|441447355|dbj|GAC48212.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
Length = 336
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S V +T SR A ++ L D +R++L G LL A++E EL QI+
Sbjct: 9 STSTVAPGDTTPSRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-- 66
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
+ L ++ L + RDL + G ++R L+ ANLRLVV +A
Sbjct: 67 -------AGLYAKH----VLATRKRLSAAKKRDLAIVVREGETARSHLLEANLRLVVSLA 115
Query: 346 KQYQGRGISLHDLLQ 360
K+Y GRG+ L DL+Q
Sbjct: 116 KRYTGRGMPLLDLIQ 130
>gi|358064323|ref|ZP_09150899.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
gi|356697448|gb|EHI59031.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
Length = 376
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LL+ADEE EL + D
Sbjct: 98 LLEGIGTEDPVRMYLKEIGTVPLLSADEELELAKRKAD---------------------- 135
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+S++E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 136 ------------------GDDSAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 171
>gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [Mycobacterium avium 104]
gi|254776043|ref|ZP_05217559.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp. avium
ATCC 25291]
gi|440778274|ref|ZP_20957040.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
gi|118164796|gb|ABK65693.1| sigma factor SigB [Mycobacterium avium 104]
gi|436721377|gb|ELP45512.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 319
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379748152|ref|YP_005338973.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379755443|ref|YP_005344115.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|379762989|ref|YP_005349386.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|387876818|ref|YP_006307122.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|406031681|ref|YP_006730572.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|443306610|ref|ZP_21036398.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
gi|378800516|gb|AFC44652.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|378805659|gb|AFC49794.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|378810931|gb|AFC55065.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|386790276|gb|AFJ36395.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|405130228|gb|AFS15483.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|442768174|gb|ELR86168.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
Length = 319
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLEAVVRDGKAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 22/97 (22%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------ 327
+RL + + +L S+ G P+L WA + DL+ L +G
Sbjct: 112 LRLVEVQERLTSELGHRPSLERWAATADIVLSDLRPTLANGKRRWAEIAKLTVEELEQVQ 171
Query: 328 ----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 172 SQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 208
>gi|309792450|ref|ZP_07686915.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225522|gb|EFO79285.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 311
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 36/42 (85%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ ++H+G ++R +LIN+NLRLVV +A++YQG G+SL DL+Q
Sbjct: 64 LEQQVHAGANARAQLINSNLRLVVSIARRYQGHGLSLLDLIQ 105
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E +K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETSKRLSA 69
Query: 315 SCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + DL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 70 AKKKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|81300366|ref|YP_400574.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
gi|81169247|gb|ABB57587.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
Length = 310
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 17/92 (18%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTAD+E EL ++Q ++ L +E S + T E A + G
Sbjct: 32 LLTADQEIELGQKVQVMMNLLEETSS-------DRTFTEAETA----------AIQLGQR 74
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQG+G+ DL+Q
Sbjct: 75 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQ 106
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G NDP+R++L LLT EE +L +IQ+ I E E ++ +
Sbjct: 90 GVRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEAELAETNEMTPK-------- 141
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + + G ++++KL ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 142 ---------IDAAIIRGENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQ 183
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S V + +T SR A ++ L D +R++L G LL A++E EL QI+
Sbjct: 9 STSTVASGDTTPSRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-- 66
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
+ + L + RDL + G +R L+ ANLRLVV +A
Sbjct: 67 -----------AGLYAKHVLATRKRLSAAKKRDLTIVVREGEVARAHLLEANLRLVVSLA 115
Query: 346 KQYQGRGISLHDLLQ 360
K+Y GRG+ L DL+Q
Sbjct: 116 KRYTGRGMPLLDLIQ 130
>gi|78185801|ref|YP_378235.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78170095|gb|ABB27192.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 377
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 42/148 (28%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKSK 294
D LRL+L LLT++EE L +Q +L RLE+ + +
Sbjct: 21 DLLRLYLQDIGRVDLLTSEEEVTLARLVQRRETLLKQQRELSDTNQAIGELHRLEELQRR 80
Query: 295 LQSQFGREPTLIEWAKAIGLS----------------------CRDLKSELHSGNSSREK 332
+ PT EWA+A L+ ++LK L +G +++
Sbjct: 81 EANHHSHWPTKQEWARAAALTLQELQNRIDAGYEAWAEKAAIDAKELKLSLRNGRRAKDH 140
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ + DL+Q
Sbjct: 141 MIQANLRLVVAVAKKYQQRGMEILDLVQ 168
>gi|56750024|ref|YP_170725.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
gi|56684983|dbj|BAD78205.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
Length = 316
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 17/92 (18%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTAD+E EL ++Q ++ L +E S + T E A + G
Sbjct: 38 LLTADQEIELGQKVQVMMNLLEETSS-------DRTFTEAETA----------AIQLGQR 80
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E++I ANLRLVV VAK+YQG+G+ DL+Q
Sbjct: 81 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQ 112
>gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis F11]
gi|253798208|ref|YP_003031209.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
1435]
gi|308232219|ref|ZP_07415326.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308369834|ref|ZP_07419229.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308371106|ref|ZP_07423839.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308372374|ref|ZP_07428435.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308373485|ref|ZP_07432499.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308374669|ref|ZP_07436917.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308375503|ref|ZP_07444157.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308377104|ref|ZP_07441142.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308378072|ref|ZP_07481430.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308379289|ref|ZP_07485765.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308380449|ref|ZP_07489983.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|385991992|ref|YP_005910290.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
gi|148722426|gb|ABR07051.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis F11]
gi|253319711|gb|ACT24314.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
1435]
gi|308214646|gb|EFO74045.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308326293|gb|EFP15144.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308329821|gb|EFP18672.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308333464|gb|EFP22315.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308337459|gb|EFP26310.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308341132|gb|EFP29983.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308346083|gb|EFP34934.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308348958|gb|EFP37809.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308353656|gb|EFP42507.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308357503|gb|EFP46354.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308361457|gb|EFP50308.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|339299185|gb|AEJ51295.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
Length = 345
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 47 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 92
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 93 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 139
>gi|2706544|emb|CAA75859.1| Sig1 [Sinapis alba]
Length = 481
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 74/124 (59%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
++K + K +SE +N+ ++ ++ G + +L+ E L +I+ +RL++ KS+L
Sbjct: 146 GAKKKTNVKAVSEVNFQNNLVKGYVKGVISDHVLSHAEVVRLSKKIKSGLRLDEHKSRLT 205
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G EP+ + A ++ +S +L++ L + +REKL +N+RLV+ +A++Y G +
Sbjct: 206 DRLGCEPSDEQLAMSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGAEMS 265
Query: 357 DLLQ 360
DL+Q
Sbjct: 266 DLVQ 269
>gi|365839537|ref|ZP_09380773.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
gi|364564505|gb|EHM42269.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
Length = 398
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 28/124 (22%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
+S +V + EG + +DP+R++L LL+A+EE L +I
Sbjct: 98 SSETVTVSLSVPEGVNIDDPVRMYLKEIGRVPLLSAEEEITLAKRI-------------- 143
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
E A G + E+ +GN +++KL +ANLRLVV +AK+Y GRG+
Sbjct: 144 ----------EAGGAEGATA----EEISTGNIAKKKLTDANLRLVVSIAKRYVGRGMLFL 189
Query: 357 DLLQ 360
DL+Q
Sbjct: 190 DLIQ 193
>gi|352096241|ref|ZP_08957121.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351676935|gb|EHA60086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 313
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLTA EE EL Q+Q + L ++ S A +
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMELTQDGSVS-------------ADSEE 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +D + + G ++++++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 64 FSSKD-RRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|148240072|ref|YP_001225459.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147848611|emb|CAK24162.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 313
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 20/110 (18%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL--QSQF-GREPTLIEWAK 310
+DP+ +L LLT EE EL Q+Q L++L ++ S QF G++ LI
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMQLTEDGSIAADSDQFDGKQRRLI---- 72
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++++++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 73 -------------RVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|302774234|ref|XP_002970534.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
gi|300162050|gb|EFJ28664.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
Length = 458
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
W + LT+ EE EL+ + + L + +S+L+ REP+ EWA R L+
Sbjct: 152 WRNLHHRYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATTANTDFRTLRR 211
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQ--GRGISLHDLLQ 360
L G +++ KLI N RLV+ +A++Y+ SL DL Q
Sbjct: 212 RLQLGEAAQNKLIEHNCRLVLFLARRYERDAGSFSLEDLCQ 252
>gi|428780485|ref|YP_007172271.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694764|gb|AFZ50914.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 328
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q ++ L ++K +L+ + RE T EW + L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMGLIEQKEELEKELEREVTEEEWVEKTEL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 78 TSAELQKAIKDGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|449461399|ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 55/92 (59%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
L+ A E E+ ++ + LE+ + L+ + GR ++ WA+A + +DL+ +L G+
Sbjct: 263 LIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSF 322
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R++L+ + LVV +AK+Y+ G+ + DL+Q
Sbjct: 323 CRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQ 354
>gi|449064777|ref|YP_007431860.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
gi|449033285|gb|AGE68712.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 338
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 40 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 85
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 86 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|425443241|ref|ZP_18823466.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
gi|389715506|emb|CCI00140.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
Length = 135
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA GL +L+ + G ++E++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 40 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 92
>gi|78779769|ref|YP_397881.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713268|gb|ABB50445.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 313
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKIKEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 67 ----QQKRIIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 44/151 (29%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL--------EKE-------------K 292
D +RL+L +LL DEE ++Q IRL E+E +
Sbjct: 103 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIRLLELRNTAAEQEEGLIRRYVELIEAR 162
Query: 293 SKLQSQFGREPTL-----------------------IEWAKAIGLSCRDLKSELHSGNSS 329
+L +Q G P+L WA+ G++ L + G +
Sbjct: 163 DRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEALDQMITEGIQA 222
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 223 KDHMIQANLRLVVSVAKKYQNRGLELLDLIQ 253
>gi|441513649|ref|ZP_20995477.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
gi|441451595|dbj|GAC53438.1| putative RNA polymerase sigma factor [Gordonia amicalis NBRC
100051]
Length = 338
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L +
Sbjct: 40 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH----VLATKKRLSAT 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 87 KKRDLATIVREGEAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|254551766|ref|ZP_05142213.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746512|ref|ZP_06505890.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|294994199|ref|ZP_06799890.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis 210]
gi|297635318|ref|ZP_06953098.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
4207]
gi|297732314|ref|ZP_06961432.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
R506]
gi|375295476|ref|YP_005099743.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|385995613|ref|YP_005913911.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|392431684|ref|YP_006472728.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
gi|422813758|ref|ZP_16862130.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|424948366|ref|ZP_18364062.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|289687040|gb|EFD54528.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|323718704|gb|EGB27866.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|328457981|gb|AEB03404.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|339295567|gb|AEJ47678.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|358232881|dbj|GAA46373.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|392053093|gb|AFM48651.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
Length = 333
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 35 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 80
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 81 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 127
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I E S + AK
Sbjct: 25 DLVRVYLNGIGRTALLTAADEVELAKRI--------EAGLYASHVLATGKRLTVAKK--- 73
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + + G S+R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 74 --RDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + KL+ Q E IE +A
Sbjct: 143 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGL---DAADKLEKQ---EAGEIELTRA-- 194
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 195 -EMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 240
>gi|433647324|ref|YP_007292326.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297101|gb|AGB22921.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 319
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L + L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAAH-----LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|113954655|ref|YP_729975.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113882006|gb|ABI46964.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 313
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLTA EE EL Q+Q + L ++ S P E+
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMELTQDGSV-------SPDSEEF----- 64
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +D + + G ++++++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 65 -SSKD-RRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|375142610|ref|YP_005003259.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823231|gb|AEV76044.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 319
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|343924623|ref|ZP_08764167.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|404258486|ref|ZP_10961805.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
gi|409390116|ref|ZP_11241887.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|343765423|dbj|GAA11093.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC 16433]
gi|403199943|dbj|GAB85121.1| RNA polymerase sigma factor SigB [Gordonia rubripertincta NBRC
101908]
gi|403403000|dbj|GAC00215.1| RNA polymerase sigma factor SigB [Gordonia namibiensis NBRC 108229]
Length = 338
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L +
Sbjct: 40 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH----VLATKKRLSAT 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 87 KKRDLATIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|331696792|ref|YP_004333031.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951481|gb|AEA25178.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 348
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 19/111 (17%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E +L +I+ F R +++ A A G
Sbjct: 46 DLVRVYLNGIGKTALLTAAQEVDLAKRIE------------AGVFARH--VLDTAAAEGR 91
Query: 315 S-----CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 92 ELDPDYARDLRAVARDGARARNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 142
>gi|33861845|ref|NP_893406.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640213|emb|CAE19748.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 313
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L K
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMMVL-TEDGQLNE------------KTKE 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ +D K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 64 FTPQD-KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|339443528|ref|YP_004709533.1| hypothetical protein CXIVA_24640 [Clostridium sp. SY8519]
gi|338902929|dbj|BAK48431.1| hypothetical protein CXIVA_24640 [Clostridium sp. SY8519]
Length = 435
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 13/113 (11%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE-KSKLQSQFGREPTLIE 307
+G + +DP+R++L LLTA+EE +L +++ I +K + ++Q E
Sbjct: 129 DGINIDDPVRMYLKEIGKVPLLTAEEEIDLAMKMEAGINADKALEEDTENQLSEEEK--- 185
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + ++ R+ G +++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 186 --KQLTITSRE-------GENAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 229
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + KL+ Q E IE +A
Sbjct: 140 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGL---DAADKLEKQ---EAGEIELTRA-- 191
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 192 -EMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 237
>gi|374608203|ref|ZP_09681002.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553735|gb|EHP80322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 319
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAAATRKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
Length = 397
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL ++++ E L K
Sbjct: 99 DLVRVYLNGIGKTALLTAADEVEL-------------SQRIEAGLYAEHLLETGEKLTRA 145
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 146 RKRDLKILAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 191
>gi|15609847|ref|NP_217226.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
gi|15842248|ref|NP_337285.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CDC1551]
gi|31793882|ref|NP_856375.1| RNA polymerase sigma factor SigB [Mycobacterium bovis AF2122/97]
gi|121638585|ref|YP_978809.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662551|ref|YP_001284074.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|224991077|ref|YP_002645766.1| RNA polymerase sigma factor SigB [Mycobacterium bovis BCG str.
Tokyo 172]
gi|254365367|ref|ZP_04981412.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|289444252|ref|ZP_06433996.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289448365|ref|ZP_06438109.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289570886|ref|ZP_06451113.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289575408|ref|ZP_06455635.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289751363|ref|ZP_06510741.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289754812|ref|ZP_06514190.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289758838|ref|ZP_06518216.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|289762881|ref|ZP_06522259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|298526180|ref|ZP_07013589.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|307085405|ref|ZP_07494518.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|313659647|ref|ZP_07816527.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
V2475]
gi|339632722|ref|YP_004724364.1| RNA polymerase sigma factor SigB [Mycobacterium africanum GM041182]
gi|340627711|ref|YP_004746163.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|378772440|ref|YP_005172173.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|385999490|ref|YP_005917789.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|386005585|ref|YP_005923864.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|392387342|ref|YP_005308971.1| sigB [Mycobacterium tuberculosis UT205]
gi|397674619|ref|YP_006516154.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|424805050|ref|ZP_18230481.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|433627826|ref|YP_007261455.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|433631811|ref|YP_007265439.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|433635772|ref|YP_007269399.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|433642896|ref|YP_007288655.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|1171103|gb|AAA86044.1| sigma factor MysB [Mycobacterium tuberculosis H37Rv]
gi|13882539|gb|AAK47099.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis CDC1551]
gi|31619476|emb|CAD94914.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium bovis AF2122/97]
gi|121494233|emb|CAL72711.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|134150880|gb|EBA42925.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis str.
Haarlem]
gi|148506703|gb|ABQ74512.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|224774192|dbj|BAH26998.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|289417171|gb|EFD14411.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T46]
gi|289421323|gb|EFD18524.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CPHL_A]
gi|289539839|gb|EFD44417.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis K85]
gi|289544640|gb|EFD48288.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T17]
gi|289691950|gb|EFD59379.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis T92]
gi|289695399|gb|EFD62828.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
EAS054]
gi|289710387|gb|EFD74403.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis GM
1503]
gi|289714402|gb|EFD78414.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis T85]
gi|298495974|gb|EFI31268.1| RNA polymerase principal sigma factor SigB [Mycobacterium
tuberculosis 94_M4241A]
gi|308365051|gb|EFP53902.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu012]
gi|326904326|gb|EGE51259.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis W-148]
gi|339332078|emb|CCC27784.1| RNA polymerase sigma factor SIGB [Mycobacterium africanum GM041182]
gi|340005901|emb|CCC45067.1| RNA polymerase sigma factor SIGB [Mycobacterium canettii CIPT
140010059]
gi|341602623|emb|CCC65299.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220537|gb|AEN01168.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CTRI-2]
gi|356594761|gb|AET19990.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|378545893|emb|CCE38171.1| sigB [Mycobacterium tuberculosis UT205]
gi|380726073|gb|AFE13868.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
RGTB423]
gi|395139524|gb|AFN50683.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis H37Rv]
gi|432155432|emb|CCK52682.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140060008]
gi|432159444|emb|CCK56748.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070008]
gi|432163404|emb|CCK60812.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070010]
gi|432167365|emb|CCK64876.1| RNA polymerase sigma factor SigB (Sigma-B) [Mycobacterium canettii
CIPT 140070017]
gi|440582187|emb|CCG12590.1| RNA POLYMERASE SIGMA FACTOR SIGB [Mycobacterium tuberculosis
7199-99]
gi|444896247|emb|CCP45508.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Rv]
Length = 323
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 25 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 70
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA+ GL+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 180 WAEIAGLTVEQLEQIQTQGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLVQ 232
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q L + ++ K+ +Q R+ ++
Sbjct: 170 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAEMTEKGEKIPTQLRRD---MQ 226
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 227 WI------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 266
>gi|376284922|ref|YP_005158132.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 31A]
gi|371578437|gb|AEX42105.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 31A]
Length = 329
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL I+ + L E SQ EP +A+
Sbjct: 30 DLVRVYLNGIGKTALLNAEDEVELAQTIE--VGLYAEYLLENSQ---EP----LTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|375293289|ref|YP_005127828.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|376254504|ref|YP_005142963.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
gi|371582960|gb|AEX46626.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|372117588|gb|AEX70058.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
Length = 329
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL I+ + L E SQ EP +A+
Sbjct: 30 DLVRVYLNGIGKTALLNAEDEVELAQTIE--VGLYAEYLLENSQ---EP----LTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|427702480|ref|YP_007045702.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427345648|gb|AFY28361.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 310
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 19/92 (20%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT EE EL Q+Q ++ L +E G S ++ K+ + G
Sbjct: 33 LLTPAEEIELGNQVQAMMHLVEESKT------------------GYSVQENKT-IKVGRR 73
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S+E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 74 SKERMMRANLRLVVSVAKKYQGKGLELLDLIQ 105
>gi|38233998|ref|NP_939765.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae NCTC
13129]
gi|375291083|ref|YP_005125623.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|376243018|ref|YP_005133870.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|376245915|ref|YP_005136154.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|376248702|ref|YP_005140646.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|376251501|ref|YP_005138382.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|376257315|ref|YP_005145206.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|376287931|ref|YP_005160497.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|376290620|ref|YP_005162867.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|376293422|ref|YP_005165096.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|419860982|ref|ZP_14383622.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38605711|sp|P33118.2|RPSB_CORDI RecName: Full=RNA polymerase sigma factor SigB
gi|38200260|emb|CAE49944.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
gi|371580754|gb|AEX44421.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|371585265|gb|AEX48930.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|372104016|gb|AEX67613.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|372106260|gb|AEX72322.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|372108545|gb|AEX74606.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|372110745|gb|AEX76805.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|372113005|gb|AEX79064.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|372115270|gb|AEX81328.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|372119832|gb|AEX83566.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|387982666|gb|EIK56167.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 329
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL I+ + L E SQ EP +A+
Sbjct: 30 DLVRVYLNGIGKTALLNAEDEVELAQTIE--VGLYAEYLLENSQ---EP----LTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LLTA +E EL +I+ + L + ++E K +
Sbjct: 25 DLVRVYLNGIGRTALLTAADEVELSKRIE---------AGLYAAH-----ILETGKRLSP 70
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + + G S+R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 AKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|392416004|ref|YP_006452609.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615780|gb|AFM16930.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 319
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + R L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE------------AGLYARH--LLQTRKRLGD 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L +LLTA EE +L +I+ + KL + P L
Sbjct: 101 SDPVRMYLKTIGRVRLLTAAEEVDLAKRIEAGL---FASEKLAATRKISPQL-------- 149
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+DL++ G ++ KL+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 150 --RQDLQAVEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQ 194
>gi|72161271|ref|YP_288928.1| sigma-70 factor [Thermobifida fusca YX]
gi|71915003|gb|AAZ54905.1| sigma-70 factor [Thermobifida fusca YX]
Length = 388
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI--EWAKAIGLSCRDLKSELHSG 326
LLTA+EE EL I+ I L E+ ++ G P EW + DL + G
Sbjct: 99 LLTAEEEVELAKAIE--IGLYAEQKLRAARTGPVPAQYSPEWFE-------DLNELVREG 149
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +LI +NLRLVV VAK+Y GRG++L DL+Q
Sbjct: 150 KLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQ 183
>gi|449464016|ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 436
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP L+ EE EL +++ + LE K+++ EPT + A A+G +
Sbjct: 133 GPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRI 192
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L SR++LI +LV+ +A YQG+G+SL DL Q
Sbjct: 193 LCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQ 230
>gi|296393381|ref|YP_003658265.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180528|gb|ADG97434.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 441
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIG 313
D +R +L LL A++E EL +I+ + +E+ ++ ++ G R PT
Sbjct: 139 DSVRAYLKQIGKVALLNAEQEVELAKRIEAGL-YAQERLRIAAEEGDRLPTT-------- 189
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S RDL + GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 190 -SRRDLNWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 235
>gi|19553123|ref|NP_601125.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|62390759|ref|YP_226161.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|1149591|emb|CAA89988.1| SigB sigma factor [Corynebacterium glutamicum]
gi|21324689|dbj|BAB99312.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigB)
[Corynebacterium glutamicum ATCC 13032]
gi|41326097|emb|CAF20260.1| RNA POLYMERASE SIGMA FACTOR [Corynebacterium glutamicum ATCC 13032]
gi|385144025|emb|CCH25064.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 331
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL I+ + L E S+ EP +A+
Sbjct: 32 DLVRVYLNGIGKTALLTAEDEVELAQTIE--VGLYAEHLLKNSE---EP----LTRAM-- 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 81 -KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 125
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 149 WAELANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 201
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LLTA +E EL +I+ + L + ++E K +
Sbjct: 25 DLVRVYLNGIGRTALLTAADEVELSKRIE---------AGLYAAH-----ILETGKRLSP 70
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + + G S+R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 AKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|145295824|ref|YP_001138645.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum R]
gi|417971573|ref|ZP_12612496.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|418244265|ref|ZP_12870688.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
gi|12958494|gb|AAK09322.1|AF320818_1 sigma factor SigB [[Brevibacterium] flavum]
gi|140845744|dbj|BAF54743.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044055|gb|EGV39736.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|354511671|gb|EHE84577.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
Length = 331
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL I+ + L E S+ EP +A+
Sbjct: 32 DLVRVYLNGIGKTALLTAEDEVELAQTIE--VGLYAEHLLKNSE---EP----LTRAM-- 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 81 -KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 125
>gi|87301096|ref|ZP_01083937.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87284064|gb|EAQ76017.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 308
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q +++L + S P+L +
Sbjct: 16 SDPISWYLGTIGRVPLLTPAEEIELGNQVQAMMQL------IDSGVEDPPSLRQ------ 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 64 ------KQLLRLGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 104
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ-DLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
+DP+R++L LLTA EE +L +I+ L EK GR T +
Sbjct: 94 SDPVRMYLKEIGKVPLLTAAEEVDLAKRIEAGLFAAEKLGG------GRRLT-------V 140
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L DL++ G+ ++ KL+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 141 ALRV-DLEAVARDGDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 187
>gi|33866155|ref|NP_897714.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639130|emb|CAE08136.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 313
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ SK E + G
Sbjct: 17 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMTLTEDGSKT----------FEDHELTG 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L+ G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 67 KQRRMLRI----GRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|336325738|ref|YP_004605704.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
gi|336101720|gb|AEI09540.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
Length = 337
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I E + T + A+
Sbjct: 39 DLVRVYLNGIGKTALLTAEDEVELSQRI--------EVGLYAEHLLKNSTDLTRARK--- 87
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 88 --RDLKILAREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 147 WAELANLSVEELKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 199
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R+L + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRELAEVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|227549119|ref|ZP_03979168.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078816|gb|EEI16779.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
Length = 331
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A EE EL +I+ L +QF + + +A
Sbjct: 32 DLVRVYLNGIGKTALLDAAEEVELAQRIE---------VGLYAQFLLDDPDTKLTRA--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 80 KKRDLKILAKQGRRARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 125
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 54/91 (59%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
L A E ++ ++ LE+ ++ L+ + G+ +L WA+A GL + L+ +L G
Sbjct: 262 LIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYC 321
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R++LI LV+++A+ Y+G GI++ DL+Q
Sbjct: 322 RDELIKNTHSLVLYIARNYRGMGIAMEDLIQ 352
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A+EE EL +I+ + E+ ++ + G +P AIG+
Sbjct: 181 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAEQMINRWVER-GEKP-------AIGI 232
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD+ GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 233 R-RDMNWIARDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 277
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + IR+ E+E KL +Q
Sbjct: 162 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERIRVTEEEGEKLSTQM-------- 213
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 214 --------RRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 258
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ + + + ++ LQ+ G + A + ++ + L+S L+ G
Sbjct: 79 LLKPDEEVELARRVRFIEEVRELQASLQATKG------QVAAELDMTEKQLESRLYQGRV 132
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+I +NLRLVV +AK+Y RG+ DL+Q
Sbjct: 133 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 164
>gi|224002653|ref|XP_002290998.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972774|gb|EED91105.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 345
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG-LSCRDLKSELHSGNSSREK 332
EE EL A+ Q+ +RL+K LQS+ GREPT EW A G ++ L+ L G ++ +
Sbjct: 29 EEKELGAKTQEAMRLQKMYEDLQSKHGREPTDDEWCAAAGKINMEALEQVLEEGIEAKNQ 88
Query: 333 LINANLRLVVHVAKQYQGRGI----SLHDLLQ 360
L+ +NLR+V V Y G+ + DL+Q
Sbjct: 89 LVASNLRMVQRVVNLYIRNGLGSEYNAGDLMQ 120
>gi|116073370|ref|ZP_01470632.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068675|gb|EAU74427.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 313
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q L+ L +Q G P +
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMAL--------TQDGTIPI-----DSDQ 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S +D + + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 64 FSSKD-RRIIRVGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA+ G +L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 157 WAQVTGCEVNELEKIQKDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 22/89 (24%)
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
+L +Q G P+ WA G++ +LK L +G ++E
Sbjct: 126 RLTAQLGHRPSPERWASTAGIALAELKPRLAAGKQRWAELAQMTVAEIDALQLAGTRAKE 185
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 186 HMIKANLRLVVSVAKKYQNRGLELLDLIQ 214
>gi|299472120|emb|CBN77105.1| RNA polymerase sigma factor [Ectocarpus siliculosus]
Length = 555
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 265 ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSEL 323
+T +T EE L+ +++ L R K + +L+++ G REPT EWA ++ +S +L ++
Sbjct: 175 DTAGRMTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQM 234
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQ----GRGISLHDLLQ 360
+ ++E+++ AN+ L+V +A+++ RG D++Q
Sbjct: 235 VASARAQERIVGANVGLIVVMARRHHPATMARGTITSDVIQ 275
>gi|386856302|ref|YP_006260479.1| RNA polymerase sigma factor [Deinococcus gobiensis I-0]
gi|379999831|gb|AFD25021.1| RNA polymerase sigma factor [Deinococcus gobiensis I-0]
Length = 390
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT +EE L +I+ E E+++ L E
Sbjct: 88 NDPVRQYLHEIGRVSLLTLEEEIALARRIE-----EGEEAR--------KILEEDLDLDD 134
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L ++ G ++R+ LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 135 RGRRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQ 181
>gi|323484891|ref|ZP_08090246.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323693741|ref|ZP_08107938.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|355624161|ref|ZP_09047550.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
gi|323401772|gb|EGA94115.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323502192|gb|EGB18057.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|354822100|gb|EHF06474.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
Length = 374
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LL+ADEE +RL K K++
Sbjct: 96 LLEGIGTEDPVRMYLKEIGTVPLLSADEE----------LRLAKRKAE------------ 133
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++++E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 134 ------------------GDDNAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 169
>gi|159037062|ref|YP_001536315.1| RNA polymerase sigma factor SigB [Salinispora arenicola CNS-205]
gi|157915897|gb|ABV97324.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 328
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L+G KLLTA +E EL +I+ + E +KL + TL +A
Sbjct: 28 TDLVRAYLYGIGKTKLLTAAQEVELSRRIEAGLFAE---AKLAACTPVSATL----RA-- 78
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
DL+ G ++++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 79 ----DLELVAVEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 121
>gi|25028367|ref|NP_738421.1| RNA polymerase sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259507424|ref|ZP_05750324.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
gi|23493652|dbj|BAC18621.1| sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259164989|gb|EEW49543.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
Length = 333
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL I+ + L E S EP +A+
Sbjct: 34 DLVRVYLNGIGKTALLTAEDEVELAQTIE--VGLYAEYKLKHSD---EP----LTRAM-- 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 83 -KRDLKVLAKEGKKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 127
>gi|50955189|ref|YP_062477.1| ECF subfamily RNA polymerase sigma-70 factor [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50951671|gb|AAT89372.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 308
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 21/111 (18%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLTA++E L +I+ + L E+ A G
Sbjct: 13 NDPVRDYLNSIGRTWLLTAEDEVSLAKRIEVGV-LAGER---------------LATRPG 56
Query: 314 LSCRDLKSELH----SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
LS R+ K ELH G + E+ I ANLRLVV +AK+Y GRG+++ DL+Q
Sbjct: 57 LSPRE-KRELHVLSDDGKRAFERFIEANLRLVVSIAKRYAGRGLAVMDLIQ 106
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQD-------LIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ L +E+E KL +Q
Sbjct: 212 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRVVEEEGEKLSTQM-------- 263
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 264 --------RRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 308
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 247 LSEGFDRNDP----LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 302
L+E D P +R++L G LLTA EE +L +I+ I + ++ E
Sbjct: 64 LAEDLDAQSPAADLVRVYLNGIGRTALLTAAEEVDLAKRIEAGIFAQHRLDTATAEGTLE 123
Query: 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ RDL++ + G ++ L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 124 SLDPQY-------RRDLRAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 174
>gi|302866072|ref|YP_003834709.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC
27029]
gi|315502628|ref|YP_004081515.1| RpoD subfamily RNA polymerase sigma-70 subunit [Micromonospora sp.
L5]
gi|302568931|gb|ADL45133.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora
aurantiaca ATCC 27029]
gi|315409247|gb|ADU07364.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Micromonospora
sp. L5]
Length = 328
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 29/115 (25%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L G KLLTA +E EL +I+ + E++ +
Sbjct: 28 TDLVRAYLNGIGRTKLLTAAQEVELSKRIEAGLFAEEKLA-------------------- 67
Query: 314 LSCRDLKSELHS--------GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+C + +ELH+ G ++++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 68 -TCTPVSAELHADLALIAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 121
>gi|312898762|ref|ZP_07758151.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
gi|310620193|gb|EFQ03764.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
Length = 437
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 28/120 (23%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+V + EG + +DP+R++L LL+A+EE L +I+ S G
Sbjct: 141 VNVNLSVPEGVNIDDPVRMYLKEIGRVPLLSAEEEITLAKRIE-----------AGSAEG 189
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
P E+ +GN +++KL +ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 190 ATP-----------------EEVSAGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQ 232
>gi|257064907|ref|YP_003144579.1| sigma-70 family RNA polymerase sigma factor [Slackia
heliotrinireducens DSM 20476]
gi|256792560|gb|ACV23230.1| RNA polymerase sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 314
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R++L LLT EE EL + Q L E + Q G +E +
Sbjct: 14 GDSIRMYLRDIGKVDLLTPAEEVELAKKYQ--TGLAAEAALAQMNEGS----VEVDRR-- 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CR L +G +++KL+ ANLRLVV +AK+Y+GRG+ L DL+Q
Sbjct: 66 -ECRKLLRVQRAGQEAKDKLVAANLRLVVSIAKKYRGRGLPLLDLVQ 111
>gi|172040574|ref|YP_001800288.1| RNA polymerase sigma factor SigB [Corynebacterium urealyticum DSM
7109]
gi|171851878|emb|CAQ04854.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7109]
Length = 340
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + E+ L+S EP + AK
Sbjct: 42 DLVRVYLNGIGKTALLTAEDEVELSQRIEAGLYAEQ---LLKSG---EP--LTRAKK--- 90
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD+K G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 91 --RDVKILAREGKAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 134
>gi|448823552|ref|YP_007416717.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7111]
gi|448277049|gb|AGE36473.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7111]
Length = 340
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + E+ L+S EP + AK
Sbjct: 42 DLVRVYLNGIGKTALLTAEDEVELSQRIEAGLYAEQ---LLKSG---EP--LTRAKK--- 90
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD+K G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 91 --RDVKILAREGKAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 134
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 125 WAELANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 177
>gi|108799152|ref|YP_639349.1| RNA polymerase sigma factor [Mycobacterium sp. MCS]
gi|119868267|ref|YP_938219.1| RNA polymerase sigma factor [Mycobacterium sp. KMS]
gi|108769571|gb|ABG08293.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694356|gb|ABL91429.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
Length = 480
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q L L ++ KL Q R+ ++
Sbjct: 178 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKLAELAEKGEKLPVQQRRD---MQ 234
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 235 WI------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 274
>gi|126434760|ref|YP_001070451.1| RNA polymerase sigma factor [Mycobacterium sp. JLS]
gi|126234560|gb|ABN97960.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 480
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q L L ++ KL Q R+ ++
Sbjct: 178 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKLAELAEKGEKLPVQQRRD---MQ 234
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 235 WI------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 274
>gi|404214750|ref|YP_006668945.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645549|gb|AFR48789.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 338
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L +
Sbjct: 40 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH----VLATKKRLSAA 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 87 KKRDLAVVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|402312660|ref|ZP_10831584.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
gi|400369118|gb|EJP22121.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
Length = 410
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE EL + QD G E
Sbjct: 131 LLEGVGTEDPVRMYLKEIGTVPLLTANEELELAKRKQD---------------GDE---- 171
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+AK ++LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 172 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQ 204
>gi|334563830|ref|ZP_08516821.1| RNA polymerase sigma factor SigB [Corynebacterium bovis DSM 20582]
Length = 332
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + Q TL K
Sbjct: 34 DLVRVYLNGIGKTALLTAEDEVELSKRIEVGL-------YAQHILDSGETLTRARK---- 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 83 --RDLKVLAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|404483026|ref|ZP_11018251.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
gi|404344116|gb|EJZ70475.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
Length = 410
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE EL + QD G E
Sbjct: 131 LLEGVGTEDPVRMYLKEIGTVPLLTANEELELAKRKQD---------------GDE---- 171
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+AK ++LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 172 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQ 204
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LL A++E EL +I+ + E+ +L +FG W K
Sbjct: 239 DPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEE---RLSKEFGEG-----WDKTKAS 290
Query: 315 S-----CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL+ H G ++ L+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 291 AEERRLYRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 341
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R++L +LL+ADEE I+ + +++ L+++ +
Sbjct: 95 NDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDAD--------- 145
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R LK + G S+ +L+ ANLRLVV +AK++ GRG+ DL+Q
Sbjct: 146 -TERQLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQ 191
>gi|317506483|ref|ZP_07964284.1| RNA polymerase sigma factor RpoD [Segniliparus rugosus ATCC
BAA-974]
gi|316255244|gb|EFV14513.1| RNA polymerase sigma factor RpoD [Segniliparus rugosus ATCC
BAA-974]
Length = 452
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIG 313
D +R +L LL A++E EL +I+ + +E+ ++ ++ G R PT
Sbjct: 150 DSVRAYLKQIGKVALLNAEQEVELAKRIEAGL-YAQERLRIATEEGDRLPTT-------- 200
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S RD+ + GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 201 -SRRDMNWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 246
>gi|444432030|ref|ZP_21227190.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
gi|443887204|dbj|GAC68911.1| RNA polymerase sigma factor SigB [Gordonia soli NBRC 108243]
Length = 340
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T +R A ++ L D +R++L G LL A++E EL QI+ +
Sbjct: 22 TRGTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---------TG 72
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L ++ L + RDL + G +R L+ ANLRLVV +AK+Y GRG+
Sbjct: 73 LYAKH----VLATKKRLSATKKRDLAQIVREGEHARAHLLEANLRLVVSLAKRYTGRGMP 128
Query: 355 LHDLLQ 360
L DL+Q
Sbjct: 129 LLDLIQ 134
>gi|373468298|ref|ZP_09559555.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371766389|gb|EHO54644.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 410
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE EL + QD G E
Sbjct: 131 LLEGVGTEDPVRMYLKEIGTVPLLTANEELELAKRKQD---------------GDE---- 171
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+AK ++LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 172 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQ 204
>gi|453382635|dbj|GAC82930.1| RNA polymerase sigma factor SigB [Gordonia paraffinivorans NBRC
108238]
Length = 340
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 19/109 (17%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI---RLEKEKSKLQSQFGREPTLIEWAKA 311
D +R++L G LL A++E EL QI+ + L K +L +
Sbjct: 42 DLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHLLATKKRLSAA------------- 88
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 89 ---KKRDLQIIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 134
>gi|123966683|ref|YP_001011764.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201049|gb|ABM72657.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 313
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 24/112 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK-----EKSKLQSQFGREPTLIEW 308
NDP+ +L LLT EE EL Q+Q ++ L + EK+K +F +
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMMTLTEDGQLNEKTK---EFTPQQ----- 68
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 69 -----------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|419718484|ref|ZP_14245801.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
gi|383305319|gb|EIC96687.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
Length = 407
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE EL + QD G E
Sbjct: 128 LLEGVGTEDPVRMYLKEIGTVPLLTANEELELAKRKQD---------------GDE---- 168
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+AK ++LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 169 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQ 201
>gi|449468291|ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 64/104 (61%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
L+ ++ G + +LL+ E L +I+ + LE+ K++L+ + G EP+ + A ++ +S
Sbjct: 193 LKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEPSEDQLAISLKISR 252
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L+S + + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 253 AELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 296
>gi|377567675|ref|ZP_09796883.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
gi|377535215|dbj|GAB42048.1| RNA polymerase sigma factor SigB [Gordonia terrae NBRC 100016]
Length = 338
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L +
Sbjct: 40 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH----VLANKKRLSAA 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 87 KKRDLAVIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 132
>gi|363420377|ref|ZP_09308469.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
gi|359735619|gb|EHK84576.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
Length = 320
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L ++ L+E K +
Sbjct: 22 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAKH-----LLETKKRLSA 67
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 68 AKKRDLAIIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 114
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R+ E+E KL +Q
Sbjct: 166 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRVAEEEGEKLSTQM-------- 217
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 218 --------RRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 262
>gi|407275570|ref|ZP_11104040.1| RNA polymerase sigma factor SigB [Rhodococcus sp. P14]
gi|452960741|gb|EME66056.1| RNA polymerase sigma factor SigB [Rhodococcus ruber BKS 20-38]
Length = 320
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-G 313
D +R++L G LL+A +E EL +I+ + L +Q L+E K +
Sbjct: 22 DLVRVYLNGIGRTALLSAADEVELAKRIE---------AGLYAQH-----LLETKKRLTA 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 68 AKKRDLAILVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 114
>gi|404421205|ref|ZP_11002928.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659218|gb|EJZ13874.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 481
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q + ++ KL +Q R+ +
Sbjct: 179 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFATQKMAEFAEKGEKLTTQVRRD---YQ 235
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 236 WI------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 275
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA EE +L K++ TL++ +
Sbjct: 86 DDPVRMYLQEIGQVPLLTAAEEVDL-------------AKKMEVAHAANDTLLQDDGMLE 132
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S R LK + +G ++R+ LI ANLRLVV +AK+Y G+++ DL+Q
Sbjct: 133 HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQ 180
>gi|225388546|ref|ZP_03758270.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
gi|225045391|gb|EEG55637.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
Length = 381
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTADEE +L +
Sbjct: 103 LLEGIGTEDPVRMYLKEIGTVPLLTADEELQLAQR------------------------- 137
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
KA G +++E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 138 ---KAEG------------DEAAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 176
>gi|262202171|ref|YP_003273379.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085518|gb|ACY21486.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length = 337
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + + L +
Sbjct: 39 DLVRVYLNGIGRTALLNAEQEVELAKQIE-------------AGLYAKHVLATKKRLSAA 85
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 86 KKRDLAIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|227833285|ref|YP_002834992.1| RNA polymerase sigma factor SigB [Corynebacterium aurimucosum ATCC
700975]
gi|262184270|ref|ZP_06043691.1| RNA polymerase sigma factor SigB [Corynebacterium aurimucosum ATCC
700975]
gi|227454301|gb|ACP33054.1| RNA polymerase sigma factor B [Corynebacterium aurimucosum ATCC
700975]
Length = 331
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL I+ L +++ L K
Sbjct: 33 DLVRVYLNGIGKTALLSAEDEVELAQTIE---------VGLYAEY----KLANAEKLTRA 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 80 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 125
>gi|118469122|ref|YP_887090.1| RNA polymerase sigma factor [Mycobacterium smegmatis str. MC2 155]
gi|399987104|ref|YP_006567453.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
gi|555680|gb|AAA85642.1| sigma factor MysA [Mycobacterium smegmatis]
gi|118170409|gb|ABK71305.1| sigma factor MysA [Mycobacterium smegmatis str. MC2 155]
gi|399231665|gb|AFP39158.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
Length = 466
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q L L ++ KL Q R+ ++
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRD---MQ 220
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 221 WI------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|78184480|ref|YP_376915.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78168774|gb|ABB25871.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 309
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR---DLKSELH 324
+LLT ++E L ++Q ++ + EP LI A G SC + + +
Sbjct: 17 QLLTPEQELMLGRKVQAMVAIT------------EPCLI--AGGTGPSCEYNDNQRFVIR 62
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 63 RGERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 98
>gi|302792318|ref|XP_002977925.1| hypothetical protein SELMODRAFT_53596 [Selaginella moellendorffii]
gi|300154628|gb|EFJ21263.1| hypothetical protein SELMODRAFT_53596 [Selaginella moellendorffii]
Length = 326
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
W R LT EE L + RL++ + K REP+ EWAK +S + L+
Sbjct: 21 WDKLPRLRLTGPEEVRLAWFMAPAKRLQQVRLKFFEHLKREPSEEEWAKVAEMSVQTLRR 80
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQY 348
L G ++R K+I NLRLV H A++Y
Sbjct: 81 LLQLGQAARNKMIKHNLRLVAHQARKY 107
>gi|406980501|gb|EKE02092.1| RNA polymerase sigma factor [uncultured bacterium]
Length = 348
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 16/69 (23%)
Query: 298 QFGREPTLI-----EWAKAIG-LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
Q GR P LI E AK+I +C + ++EKL+NANLRLVV +AK+Y GR
Sbjct: 77 QIGRIPLLIPDEEIELAKSIKETNC----------SIAKEKLVNANLRLVVSIAKKYIGR 126
Query: 352 GISLHDLLQ 360
G+S DL+Q
Sbjct: 127 GLSFLDLIQ 135
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R+ E+E KL +Q
Sbjct: 172 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRVAEEEGEKLSTQM-------- 223
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 224 --------RRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 268
>gi|407983270|ref|ZP_11163927.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
gi|407375163|gb|EKF24122.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
Length = 319
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LL A +E EL +I+ + L +Q L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLETRKRLGE 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R+L+ + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 KRRRELEEVVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|225021249|ref|ZP_03710441.1| hypothetical protein CORMATOL_01261 [Corynebacterium matruchotii
ATCC 33806]
gi|224945982|gb|EEG27191.1| hypothetical protein CORMATOL_01261 [Corynebacterium matruchotii
ATCC 33806]
Length = 391
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E L I+ + L E S EP + AK
Sbjct: 92 DLVRVYLNGIGKTALLTAEDEVHLAQTIE--VGLYAEYLLTDSD---EP--LTRAKK--- 141
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 142 --RDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 185
>gi|72382695|ref|YP_292050.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|124026414|ref|YP_001015529.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|72002545|gb|AAZ58347.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|123961482|gb|ABM76265.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 313
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q L+ L E +++ Q +K
Sbjct: 17 SDPISWYLSSIGRVPLLTPAEEIELGNQVQTLMSL-TEDGQIKEQ----------SKEFT 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 66 SHQRRL---IRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|302670285|ref|YP_003830245.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
gi|302394758|gb|ADL33663.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
Length = 521
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G DP+R++L LLTAD+E +L ++ EKE + + +
Sbjct: 214 DGISIEDPVRMYLKEIGKVPLLTADQEIDLAQAMEAGADAEKELADDK----------DV 263
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K ++L + ++ G ++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 264 NKLSDARKKELNAIIYEGEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 315
>gi|358445390|ref|ZP_09156000.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608836|emb|CCE54245.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 334
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 23/141 (16%)
Query: 230 VTNHETYNSRKASVK--KKLSEGFDRN--------DPLRLFLWGPETRKLLTADEEFELI 279
+T+ NS AS K K++ G R D +R++L G LL+A++E EL
Sbjct: 1 MTDASAQNSHDASEKNEKEVDRGSRRGQTNDNPSADLVRVYLNGIGKTALLSAEDEVELA 60
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLR 339
I+ L +++ L K RD+K + G +R L+ ANLR
Sbjct: 61 QAIE---------IGLYAEY----KLANADKLTRAEKRDMKILVKEGKKARSHLLEANLR 107
Query: 340 LVVHVAKQYQGRGISLHDLLQ 360
LVV +AK+Y GRG+ L DL+Q
Sbjct: 108 LVVSLAKRYTGRGMPLLDLIQ 128
>gi|309791990|ref|ZP_07686468.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225984|gb|EFO79734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 396
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 15/128 (11%)
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
ET ++ + + LS+ D +RL+L LLTA++E L I+ R +K +
Sbjct: 76 EETISTVVIDLDEGLSDAL-LGDSVRLYLREIGQVPLLTAEQEKRLAQTIE---RGQKAQ 131
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
K++ +PT A+A+ +L+ ++ GN +R+++ ANLRLVV +AK+Y+ RG
Sbjct: 132 VKIKDL---DPT---SAEAV-----ELRRQIEKGNDARQQMAAANLRLVVSIAKRYRDRG 180
Query: 353 ISLHDLLQ 360
+ L DL+Q
Sbjct: 181 LPLLDLIQ 188
>gi|2565297|gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R+ E+E KL +Q
Sbjct: 168 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRVAEEEGEKLSTQM-------- 219
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 220 --------RRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 264
>gi|334183639|ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana]
gi|332196178|gb|AEE34299.1| sigma factor A [Arabidopsis thaliana]
Length = 498
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 23/114 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL-------IAQIQDLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +A +++L + E E +L+ + R I
Sbjct: 105 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELEKAEDEGIELERREKRRLGRI 164
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E G ++++LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 165 E----------------QVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQ 202
>gi|238063483|ref|ZP_04608192.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237885294|gb|EEP74122.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
Length = 334
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L G KLLTA++E EL ++++ E L
Sbjct: 34 TDLVRAYLNGIGRTKLLTAEQEVEL-------------AKRIEAGLFAEEKLATCTPVST 80
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ DL+ + G ++++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 81 VLRADLEIIVAEGRTAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 127
>gi|237785656|ref|YP_002906361.1| RNA polymerase sigma factor SigB [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758568|gb|ACR17818.1| RNA polymerase sigma factor B [Corynebacterium kroppenstedtii DSM
44385]
Length = 326
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL +I+ + L +Q L+E +
Sbjct: 29 DLVRVYLNGIGRTALLNAEDEVELSQRIE---------AGLYAQH-----LLESDEQFTP 74
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S RDLK+ G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 75 SKKRDLKAVAKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 121
>gi|453363975|dbj|GAC80290.1| RNA polymerase sigma factor SigB [Gordonia malaquae NBRC 108250]
Length = 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + + L +
Sbjct: 34 DLVRVYLNGIGRTALLNAEQEVELAKQIE-------------AGLYAKHLLATKKRLTAA 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL G+++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 81 KKRDLNIIAREGDAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 126
>gi|357055293|ref|ZP_09116365.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
gi|355382932|gb|EHG30022.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
Length = 381
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTADEE +L AQ R+
Sbjct: 103 LLEGIGTEDPVRMYLKEIGTVPLLTADEELDL-AQ-------------------RKADGD 142
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E+AK E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 143 EFAK--------------------ERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 176
>gi|213964561|ref|ZP_03392761.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
gi|213952754|gb|EEB64136.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
Length = 329
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A+EE EL ++++ E L AK
Sbjct: 31 DLVRVYLNGIGKTALLSAEEEVEL-------------SKRIEAGVYAEHLLQTGAKMTRA 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD+K G ++R L+ ANLRLVV +AK+Y RG+ L DL+Q
Sbjct: 78 KKRDVKILAKEGKAARAHLLEANLRLVVSLAKRYTNRGMPLLDLIQ 123
>gi|11762220|gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
Length = 502
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYNNLGAEMSDLVQ 290
>gi|400536819|ref|ZP_10800353.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
gi|400329832|gb|EJO87331.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
Length = 319
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|255325135|ref|ZP_05366241.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
gi|255297700|gb|EET77011.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
Length = 365
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL I+ L +++ L K
Sbjct: 67 DLVRVYLNGIGKTALLSAEDEVELAQAIE---------VGLYAEY----KLNNAEKLTRA 113
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 114 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 159
>gi|160941160|ref|ZP_02088497.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
gi|158435721|gb|EDP13488.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
Length = 381
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTADEE +L AQ R+
Sbjct: 103 LLEGIGTEDPVRMYLKEIGTVPLLTADEELDL-AQ-------------------RKADGD 142
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E+AK E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 143 EFAK--------------------ERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 176
>gi|260434805|ref|ZP_05788775.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260412679|gb|EEX05975.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 312
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ S+ + + G T
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMSLTEDGSR-EFEDGELTT--------- 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R L L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 66 -AQRRL---LRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 108
>gi|449525642|ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 341
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP L+ EE EL +++ + LE K+++ EPT + A A+G +
Sbjct: 38 GPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDRI 97
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L SR++LI +LV+ +A YQG+G+SL DL Q
Sbjct: 98 LCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQ 135
>gi|297837779|ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 188 VRGYVKGVISEDVLSHAEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 247
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 248 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 291
>gi|2398851|dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 502
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D188]
Length = 323
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-G 313
D +R++L G LLTA+EE +L +I+ + L ++ ++E K +
Sbjct: 25 DLVRVYLNGIGRTALLTAEEEVDLAKRIE---------AGLYAK-----QVLENTKRLSA 70
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R+L + G+++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 VKKRNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|305681000|ref|ZP_07403807.1| RNA polymerase sigma factor SigB [Corynebacterium matruchotii ATCC
14266]
gi|305659205|gb|EFM48705.1| RNA polymerase sigma factor SigB [Corynebacterium matruchotii ATCC
14266]
Length = 365
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E L I+ + L E S EP + AK
Sbjct: 66 DLVRVYLNGIGKTALLTAEDEVHLAQTIE--VGLYAEYLLTDSD---EP--LTRAKK--- 115
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 116 --RDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 159
>gi|359427058|ref|ZP_09218133.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
gi|358237671|dbj|GAB07715.1| RNA polymerase sigma factor SigB [Gordonia amarae NBRC 15530]
Length = 332
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 225 VSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD 284
+++P+V T ++R ++ L D +R++L G LL A++E EL QI+
Sbjct: 6 IARPEVAT--TPSTRPQMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE- 62
Query: 285 LIRLEKEKSKLQSQFGREPTLIEWAKAI-GLSCRDLKSELHSGNSSREKLINANLRLVVH 343
+ R L++ K + RDL + G +R L+ ANLRLVV
Sbjct: 63 -----------VGLYARH--LLDSGKRMTAAKKRDLAIIVREGEIARSHLLEANLRLVVS 109
Query: 344 VAKQYQGRGISLHDLLQ 360
+AK+Y GRG+ L DL+Q
Sbjct: 110 LAKRYTGRGMPLLDLIQ 126
>gi|379029019|dbj|BAL66752.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 297
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS- 315
+R++L G LL A E EL +I+ + E L+E K +G +
Sbjct: 1 MRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGENR 46
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 47 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 91
>gi|254432880|ref|ZP_05046583.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
gi|197627333|gb|EDY39892.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
Length = 331
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 19/106 (17%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+ +L LLT EE EL Q+Q +++L E +K P+ + K +
Sbjct: 41 DPISWYLASIGREPLLTPAEEIELGNQVQAMMQL-LEAAK--------PSYSDHEKKL-- 89
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L G S+++++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 90 --------LRIGKRSKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 127
>gi|403730463|ref|ZP_10949020.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
gi|403202499|dbj|GAB93351.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
Length = 339
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 20/142 (14%)
Query: 225 VSKPQVTNHETYNSRKASVKKKLSE-GFDRNDP----LRLFLWGPETRKLLTADEEFELI 279
V++P T ++ + + ++E D P +R++L G LL A++E EL
Sbjct: 6 VARPTTTIEGADDATRTGTRPAMTEQDLDAQSPASDLVRVYLNGIGRTALLNAEQEVELA 65
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGNSSREKLINANL 338
QI+ + L ++ ++E K + + RDL + G +R L+ ANL
Sbjct: 66 KQIE---------AGLYAKH-----VLETRKRLSATRKRDLAIIVREGEYARAHLLEANL 111
Query: 339 RLVVHVAKQYQGRGISLHDLLQ 360
RLVV +AK+Y GRG+ L DL+Q
Sbjct: 112 RLVVSLAKRYTGRGMPLLDLIQ 133
>gi|383791048|ref|YP_005475622.1| sigma-70 family RNA polymerase sigma factor [Spirochaeta africana
DSM 8902]
gi|383107582|gb|AFG37915.1| RNA polymerase sigma factor, sigma-70 family [Spirochaeta africana
DSM 8902]
Length = 314
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 15/109 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL---IAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
+D L L+L KLLT ++E E+ I +++D LE+ S+ Q G ++ +
Sbjct: 12 SDSLSLYLKQIAKYKLLTVEQELEIGRRIVELRD--ELERVTSEYQVHGGDAHDYMQRSS 69
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
+ R+ KS ++INANLRLVV +AK+YQ RG++L DL+
Sbjct: 70 TVERELREQKS----------RMINANLRLVVSIAKKYQHRGLNLLDLI 108
>gi|86742187|ref|YP_482587.1| sigma 38 [Frankia sp. CcI3]
gi|86569049|gb|ABD12858.1| sigma 38 [Frankia sp. CcI3]
Length = 422
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G++++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 173 RDLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|418053337|ref|ZP_12691407.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353178512|gb|EHB44091.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 319
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ F L+E K +
Sbjct: 21 DLVRVYLNGIGKTALLTAEDEVELAKRIE------------AGLFA--AHLLETRKRLSD 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 67 NRKRDLAIIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 113
>gi|227503471|ref|ZP_03933520.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|306836281|ref|ZP_07469263.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
gi|227075974|gb|EEI13937.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|304567873|gb|EFM43456.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
Length = 337
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL I+ L +++ L K
Sbjct: 39 DLVRVYLNGIGKTDLLSAEDEVELAQTIE---------VGLYAEY----KLNNAEKLTRA 85
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 86 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|172036788|ref|YP_001803289.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|354554599|ref|ZP_08973903.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698242|gb|ACB51223.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|353553408|gb|EHC22800.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 420
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+WA + ++L+ SG S++++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 159 QWATLANIDIQELEEIQKSGIRSKDEMIKANLRLVVSVAKKYQHRGLELLDLIQ 212
>gi|158313089|ref|YP_001505597.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158108494|gb|ABW10691.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 423
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G +++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 174 RDLGVLVTDGQAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 217
>gi|15217767|ref|NP_176666.1| sigma factor A [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor
A; Short=Sigma-A; AltName: Full=RNA polymerase sigma
factor sig1; Short=Atsig1; Short=Sigma factor 1;
AltName: Full=RNA polymerase sigma factor sig2;
Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; Flags: Precursor
gi|5042421|gb|AAD38260.1|AC006193_16 RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis thaliana]
gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis thaliana]
gi|2558514|emb|CAA74640.1| plastid RNA polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis thaliana]
gi|17064900|gb|AAL32604.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|222423019|dbj|BAH19492.1| AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| sigma factor A [Arabidopsis thaliana]
Length = 502
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|40353297|gb|AAR84412.1| essential primary sigma 70 factor [Frankia sp. EaI-12]
Length = 409
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+R+ K++L+ ++P+R++L LLTA+E+ +L +I+
Sbjct: 93 ARRRREKEELALKAPTSEPVRMYLKEIGKVPLLTAEEQVDLAKRIE------------AG 140
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
F + + K RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ D
Sbjct: 141 LFASDKLAVATKKTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLD 200
Query: 358 LLQ 360
L+Q
Sbjct: 201 LIQ 203
>gi|417001145|ref|ZP_11941059.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
gi|333975628|gb|EGL76507.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
Length = 386
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 28/127 (22%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E + +K S+ + G + +DP+R++L LL+ADEE L QI+ S
Sbjct: 83 EVSSEKKISIDLSVDSGVNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE-------AGS 135
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+ + + K I LS +++KL++ANLRLVV +AK+Y GRG+
Sbjct: 136 QEDATY----------KDIQLS-----------KKAKKKLVDANLRLVVSIAKRYVGRGM 174
Query: 354 SLHDLLQ 360
DL+Q
Sbjct: 175 LFLDLIQ 181
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A+EE EL +I+ + + ++L + + P G+
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------GI 276
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD+ G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 277 HHRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE L +++E + Q E LIE +A
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVHL------AMKIEAGTAASQKLEDFEDGLIELNRA-- 202
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L G ++++LI+ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 203 -EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQ 248
>gi|2385344|emb|CAA74896.1| sigma factorB [Arabidopsis thaliana]
Length = 500
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 185 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 244
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 245 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQ 288
>gi|441207686|ref|ZP_20973626.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|440627869|gb|ELQ89674.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 454
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q L L ++ KL Q R+ ++
Sbjct: 152 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRD---MQ 208
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 209 WI------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 248
>gi|427704523|ref|YP_007047745.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427347691|gb|AFY30404.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 306
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 17/96 (17%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR--DL-KSELH 324
+LLT ++E L ++Q ++ L + ++ A G +C DL K L
Sbjct: 16 QLLTPEQELTLGRKVQAMVSLNERCAQ--------------AGGSGPACEFDDLEKRTLR 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G ++++++ ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 62 NGERAKQQMVTANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|317969234|ref|ZP_07970624.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0205]
Length = 311
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 17/96 (17%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC--RDL-KSELH 324
+LLT ++E L ++Q +++L + + A +G +C D+ K +
Sbjct: 16 QLLTPEQELMLGRKVQAMVQLHERCAM--------------AGGVGEACSYNDIEKRTMR 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 62 VGERAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|239626154|ref|ZP_04669185.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|355682437|ref|ZP_09062447.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
gi|239520384|gb|EEQ60250.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
gi|354811017|gb|EHE95653.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
Length = 381
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTADEE L + D
Sbjct: 103 LLEGIGTEDPVRMYLKEIGTVPLLTADEELNLAQRKAD---------------------- 140
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ ++E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 141 ------------------GDDYAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 176
>gi|226357433|ref|YP_002787172.1| sigma-70 family RNA polymerase sigma factor [Deinococcus deserti
VCD115]
gi|226319423|gb|ACO47418.1| putative RNA polymerase sigma factor, sigma-70 family [Deinococcus
deserti VCD115]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT EE DL R + + ++Q E L E +
Sbjct: 60 NDPVRQYLHEIGRVPLLTVTEEI-------DLARRMEAGQEARTQLETEHELGERER--- 109
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L+ + G ++++LI ANLRLVV +AK+Y RG+ L DL+Q
Sbjct: 110 ---RRLQRTVEDGEHAKQQLIEANLRLVVSIAKKYANRGMGLLDLIQ 153
>gi|397629977|gb|EJK69584.1| hypothetical protein THAOC_09141 [Thalassiosira oceanica]
Length = 657
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG-LSCRDLKSELHSGNS 328
+T +E EL + Q+ +RL+K +L+ ++GR PT EW A G ++ LK + G
Sbjct: 337 VTPKQERELGTKTQEAMRLQKLHDELKIKYGRRPTDDEWCAAAGKINVFALKEAMQVGLE 396
Query: 329 SREKLINANLRLVVHVAKQYQGRGI----SLHDLLQ 360
++ +L+ +NLR+V V Y G+ + DLLQ
Sbjct: 397 AKNQLVASNLRMVQRVVNMYIRNGLGSEYNAADLLQ 432
>gi|159470255|ref|XP_001693275.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
gi|42742499|gb|AAM88387.2|AF525691_1 RNA polymerase sigma factor [Chlamydomonas reinhardtii]
gi|47076042|emb|CAF25319.1| sigma-like transcription factor [Chlamydomonas reinhardtii]
gi|158277533|gb|EDP03301.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
Length = 752
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 260 FLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDL 319
FL E+ L ++E E+ A +D + LEK K + + R T E A A+ + L
Sbjct: 421 FLGKVESLSTLDVEKEREVTAVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESL 480
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
K +G ++E L+ +N +LV+ V K + G+G + DL+
Sbjct: 481 KLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLV 520
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
I+ L RL+ +KLQ+Q REPTL E AKA GL
Sbjct: 572 IEQLTRLKNLSAKLQTQLAREPTLPELAKAAGL 604
>gi|443673296|ref|ZP_21138364.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414111|emb|CCQ16702.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 323
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-G 313
D +R++L G LLTA EE +L +I+ + ++ ++E K +
Sbjct: 25 DLVRVYLNGIGRTALLTAAEEVDLAKRIE------------AGLYAKQ--VLENTKRLSA 70
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R+L + G+S+R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 VKKRNLAIIVRDGSSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
>gi|380302336|ref|ZP_09852029.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium squillarum
M-6-3]
Length = 458
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 20/110 (18%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI----RLEKEKSKLQSQFGREPTLIEWAK 310
DP++ +L LL A +E EL +I+ + +L++++S ++++ GRE +I
Sbjct: 159 DPVKDYLKQIGKVALLNAAQEVELAERIEAGLYAEQKLKRDESIVRTKPGRELAMI---- 214
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ G ++++ L+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 215 ------------VEDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 252
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L + F +DP+R++L LLT DEE +L QD+ + K +++ +
Sbjct: 138 LVDSFGIDDPVRMYLKEIGKVNLLTPDEEIQLA---QDMGAGDAAKEQMEE--------L 186
Query: 307 EWAKAIGLSCRD-------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
E A+ G L+ + G +++++L ANLRLVV +AK+Y GRG+ DL+
Sbjct: 187 EQARKNGEEVSLTEEEEKELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLI 246
Query: 360 Q 360
Q
Sbjct: 247 Q 247
>gi|325673633|ref|ZP_08153324.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|325555654|gb|EGD25325.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 448
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D L+ +L LLTADEE EL I+ + S+ R P E
Sbjct: 148 DGLQWYLKRIRRVDLLTADEEVELSRSIEAGLYASHLLEAYPSRTTR-PAPAER------ 200
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ + G S+R ++I ANLRLVV A+ Y+GRG+ + DL+Q
Sbjct: 201 --RDLRQIVQDGRSARTRMIEANLRLVVSTAQNYEGRGLDMLDLVQ 244
>gi|311739612|ref|ZP_07713447.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305428|gb|EFQ81496.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 337
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL I+ L +++ L K
Sbjct: 39 DLVRVYLNGIGKTALLSAEDEVELAQAIE---------VGLYAEY----KLNNAEKLTRA 85
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 86 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|108805110|ref|YP_645047.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108766353|gb|ABG05235.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 366
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 15/69 (21%)
Query: 297 SQFGREPTL-----IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
++ GR P L I AKAI C+ S++KL+ ANLRLVV +AK+Y+ R
Sbjct: 102 AEIGRVPLLTHADEIRLAKAISRGCK----------RSKDKLVEANLRLVVSIAKKYRNR 151
Query: 352 GISLHDLLQ 360
G+S DL+Q
Sbjct: 152 GVSFLDLIQ 160
>gi|357128317|ref|XP_003565820.1| PREDICTED: uncharacterized protein LOC100824063 [Brachypodium
distachyon]
Length = 989
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
E+ L+ I++ LEK + + + G+E + WAKA G+ LKS L +G RE+L
Sbjct: 696 EQSALLMTIKECANLEKIRENMVKE-GQEVSYDRWAKAAGVDEAVLKSRLQAGYFCRERL 754
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV ++A+ Y G G + DLLQ
Sbjct: 755 LVTTEWLVKYIARTYTGMGTAFEDLLQ 781
>gi|7363220|emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 53/86 (61%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E E+ ++ + +E+ ++KL+ + G+ ++ WA+A G++ + L LH G R++L+
Sbjct: 274 EAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCRDELV 333
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV+ +A+ Y+G GI+ DL+Q
Sbjct: 334 KSTRSLVLFLARNYRGLGIAHEDLIQ 359
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R+ E+E KL +Q
Sbjct: 137 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRIAEEEGEKLSTQM-------- 188
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 189 --------RRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 233
>gi|1657704|gb|AAC44535.1| sigma factor MytB [Mycobacterium tuberculosis]
Length = 345
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL E EL +I+ + E L+E K +G
Sbjct: 47 DLVRVYLNGIGKTALLNPAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 92
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 93 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 139
>gi|25991936|gb|AAN76995.1|AF481769_1 primary sigma 70 transcriptional factor [Frankia sp. ACN14a]
Length = 385
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G++++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 136 RDLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 179
>gi|296117743|ref|ZP_06836327.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
gi|295969474|gb|EFG82715.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
Length = 334
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL I+ I L E KL + K
Sbjct: 36 DLVRVYLNGIGKTALLSAEDEVELAQAIE--IGLYAE-YKLNTA----------EKLTRA 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD+K + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 83 EKRDMKILVKEGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 128
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R+ E+E KL +Q
Sbjct: 145 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRIAEEEGEKLATQM-------- 196
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 197 --------RRDLRWIIRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 241
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA +E +L +I+ + + +KL++ E IE +A
Sbjct: 139 GDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGL---EASNKLEAADAGE---IELTRA-- 190
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 191 -EMRRLTRVEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 236
>gi|111225055|ref|YP_715849.1| alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
gi|111152587|emb|CAJ64329.1| Alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
Length = 373
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G++++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 124 RDLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 167
>gi|40353299|gb|AAR84413.1| alternative primary sigma 70 factor [Frankia sp. ORS020607]
Length = 220
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G++++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 11 RDLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 54
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL----IEWAK 310
D +R +L LL A+EE EL +I+ + + ++L + + PT + W
Sbjct: 274 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWI- 332
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 333 -----CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 370
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E E+ ++ + +E+ +++L+ + G+ +L WA A G++ + L LH G R++L+
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV+ +A+ Y+G GI+ DL+Q
Sbjct: 338 KSTRSLVLFLARNYRGMGIAHEDLIQ 363
>gi|356543070|ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 64/104 (61%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
L+ ++ G + +LL+ E L +I+ + LE+ KS+L+ + G EP+ + A ++ +S
Sbjct: 188 LKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISR 247
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 248 TELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291
>gi|379736727|ref|YP_005330233.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
gi|378784534|emb|CCG04203.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
Length = 328
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
+ G D +R++L LLTA++E EL +I+ + E+ L Q G P
Sbjct: 23 TSGLVSTDLVRVYLNTIGKTALLTAEQEVELAKRIEAGLYAER---LLAEQQGLTPA--- 76
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD K+ G +++ L+ ANLRLVV VAK+Y G G++ DL+Q
Sbjct: 77 -------RKRDYKTLATDGKAAKAHLLEANLRLVVSVAKRYTGHGMTFLDLIQ 122
>gi|443323548|ref|ZP_21052553.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442786728|gb|ELR96456.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 381
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 43/150 (28%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL+ +EE L +IQ ++L + +++
Sbjct: 27 TDLVRLYLQDIGKIPLLSKEEEVVLAQKIQRYLQLLELRAQACQQLDPVMAEFARLITVH 86
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
L +Q G P+L WAK L +LK L +G ++
Sbjct: 87 DHLAAQLGHRPSLKTWAKTGNLEITELKQILTTGKLCWAQIAKLELKELEMIQKAGIEAK 146
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ ANLRLVV +AK+YQ RG+ L DL+Q
Sbjct: 147 NTLLAANLRLVVSIAKKYQNRGLELLDLIQ 176
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ-FGREPTLIEWAKAI 312
D LR +L LL+ ++E L Q+Q+L+ LE+ + +L + G EP+ A
Sbjct: 24 GDSLRSYLRDIGRVPLLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELLAAEA 83
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
GL+ L+ LH+G ++E+++ ANLRLVV VAK+Y R + L DL+Q
Sbjct: 84 GLTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + + KL++ E +E +A
Sbjct: 150 GDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGL---EATEKLEAADAGE---LELTRA-- 201
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L + G +++ LI+ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 202 -EIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 247
>gi|333991092|ref|YP_004523706.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487060|gb|AEF36452.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 321
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + K + + +FG +
Sbjct: 23 DLVRVYLNGIGKTALLNAADEVELAKRIEAGL-YAKHLLETRKRFGEKRK---------- 71
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R+L + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 72 --RELATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 115
>gi|429730663|ref|ZP_19265309.1| Sigma-70 region 2 [Corynebacterium durum F0235]
gi|429147101|gb|EKX90131.1| Sigma-70 region 2 [Corynebacterium durum F0235]
Length = 329
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E +L I+ + L E S+ EP +A+
Sbjct: 30 DLVRVYLNGIGKTALLTAEDEVQLAQTIE--VGLYAEHLLENSE---EP----LTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -KRDLKVLARQGKHARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
+T +EE L +IQ + ++ + +L + GR + A +G + L G +
Sbjct: 47 VTPEEEIHLARRIQAKLAIDGAREELAMRLGRPSPEEDVAAFMGRDPKALIEATRQGLWA 106
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ KLINANLRLVV +AK+Y GR + DL+Q
Sbjct: 107 QRKLINANLRLVVSIAKKYIGRNVPFLDLIQ 137
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL----IEWAK 310
D +R +L LL A+EE EL +I+ + + ++L + + PT + W
Sbjct: 272 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWI- 330
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 331 -----CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 368
>gi|88809137|ref|ZP_01124646.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88787079|gb|EAR18237.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 313
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q L++L ++ S + L + +
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQKLMQLTEDGS-----IAADSELFDSKQ--- 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ + G ++++++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 69 ------RRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|333919424|ref|YP_004493005.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481645|gb|AEF40205.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 327
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + LQ+ P L K
Sbjct: 29 DLVRVYLNGIGRTALLTAADEVELAKRIEAGL---YATHILQTA----PKLTPAKK---- 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 78 --RDLAYIVRDGQKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 121
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG DP+R++L LL+ADEE EL ++D ++ + L+ + + E
Sbjct: 119 EGVSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRI--DGASEEE 176
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
I + L+ ++ G ++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 177 KAEIKEEIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 228
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 23/114 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE L +I Q L E EK +L R I
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFEDEKIELSRAEQRRLMRI 210
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E G ++++LI+ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 211 E----------------QVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQ 248
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L + F +DP+R++L LLT DEE +L QD+ + K +++ +
Sbjct: 133 LVDSFGIDDPVRMYLKEIGKVNLLTPDEEVQLA---QDMGAGDAAKEQMEE--------L 181
Query: 307 EWAKAIGLSCRD-------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
E A+ G L+ + G +++++L ANLRLVV +AK+Y GRG+ DL+
Sbjct: 182 EQARKNGEEVSITEEEEKELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLI 241
Query: 360 Q 360
Q
Sbjct: 242 Q 242
>gi|271963879|ref|YP_003338075.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
gi|270507054|gb|ACZ85332.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
Length = 392
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
+V +PQ ET S + V K+ +D +R++L LLTA+EE EL I+
Sbjct: 71 EVLEPQ-GEEETTRSDEEDVGKRAPT----SDLVRIYLREIGRVPLLTAEEEVELAKSIE 125
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
+ E KL S R L+ + K + G ++++LI ANLRLVV
Sbjct: 126 AGLFAE---DKLTSVVSR------------LAFPEFKELVWQGTRAKQRLIEANLRLVVS 170
Query: 344 VAKQYQGRGISLHDLLQ 360
+AK+Y GRG+ DL+Q
Sbjct: 171 IAKRYVGRGMLFLDLIQ 187
>gi|266625476|ref|ZP_06118411.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
gi|288862622|gb|EFC94920.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
Length = 381
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LL+ADEE +RL K K+
Sbjct: 103 LLEGIGTEDPVRMYLKEIGTVPLLSADEE----------LRLAKRKA------------- 139
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 140 -----------------DGDEDAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 176
>gi|163846411|ref|YP_001634455.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222524178|ref|YP_002568649.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163667700|gb|ABY34066.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222448057|gb|ACM52323.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 313
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G +DP+ L+L LLT ++E Q L + + + + EP L
Sbjct: 8 GRSASDPIVLYLNEIGAEPLLTFEQE-------QHLAQTMSQGRRAAERLHNEPLLPLAE 60
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K + L +++++G +R +LIN+NLRLVV +A++YQG G+SL DL+Q
Sbjct: 61 K------QRLIAQVNAGEQARAQLINSNLRLVVSIARRYQGHGLSLLDLIQ 105
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 23/114 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL-------IAQIQDLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +A ++L + E E +L+ + R I
Sbjct: 115 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATEELEKAEDEGIELERREKRRLGRI 174
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
E G ++++LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 175 E----------------QVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQ 212
>gi|288920765|ref|ZP_06415065.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288347841|gb|EFC82118.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 425
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G +++++L++ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 176 RDLGLLVTDGQAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 219
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ-DLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL A+EE EL +I+ L E+ + ++S P L
Sbjct: 159 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRRAIESGEKVSPQL-------- 210
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 211 --RRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 255
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG DP+R++L LL+ADEE EL ++D ++ + L+ + + E
Sbjct: 103 EGVSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRI--DGASEEE 160
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
I + L+ ++ G ++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 161 KAEIKEEIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 212
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D LR +L +LLTA EE EL I+ + E+ ++ R P + +G
Sbjct: 85 DLLRQYLREIGRVRLLTAVEEVELARAIEAGLFAEEALDRVPPAAERRPA---DERLLG- 140
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
DL + G ++ +LI ANLRLVV VAK+Y GRG++L DL+Q
Sbjct: 141 ---DLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTLLDLIQ 183
>gi|312139424|ref|YP_004006760.1| sigma-70 factor sigb [Rhodococcus equi 103S]
gi|325672687|ref|ZP_08152383.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
gi|311888763|emb|CBH48075.1| sigma-70 factor SigB [Rhodococcus equi 103S]
gi|325556564|gb|EGD26230.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi ATCC
33707]
Length = 322
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E +L ++++ L +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVDL-------------ARRIEAGLYAAHVLATKKRLTAA 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 71 KKRDLATIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|269798255|ref|YP_003312155.1| RpoD subfamily RNA polymerase sigma-70 subunit [Veillonella parvula
DSM 2008]
gi|282850493|ref|ZP_06259872.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294792116|ref|ZP_06757264.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
gi|294793987|ref|ZP_06759124.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|269094884|gb|ACZ24875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Veillonella
parvula DSM 2008]
gi|282579986|gb|EFB85390.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294455557|gb|EFG23929.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|294457346|gb|EFG25708.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
Length = 386
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 28/127 (22%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E + +K S+ + G + +DP+R++L LL+ADEE L QI+
Sbjct: 83 EVSSEKKISIDLSVDSGVNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE---------- 132
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
G ++ +++KL++ANLRLVV +AK+Y GRG+
Sbjct: 133 ------------------AGAQEDATYKDIQLSKKAKKKLVDANLRLVVSIAKRYVGRGM 174
Query: 354 SLHDLLQ 360
DL+Q
Sbjct: 175 LFLDLIQ 181
>gi|258653916|ref|YP_003203072.1| RNA polymerase sigma factor SigB [Nakamurella multipartita DSM
44233]
gi|258557141|gb|ACV80083.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella
multipartita DSM 44233]
Length = 334
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L+S P
Sbjct: 36 DLVRVYLNGIGKTALLTAEQEVELAKRIEAGV---FAAHVLESDVEMSPQ---------- 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+DL+ + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 83 RRKDLRMVVRDGGRARNHLLVANLRLVVSLAKRYTGRGMPLLDLIQ 128
>gi|408825995|ref|ZP_11210885.1| RNA polymerase sigma factor [Streptomyces somaliensis DSM 40738]
Length = 363
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTA EE EL +I+ + E+ + R P L DL + + G +
Sbjct: 80 LLTAAEEVELARRIEAGLFAEE-------KLARTPDLDSRLAG------DLDTLVVRGRT 126
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ +LI ANLRLVV +AK+Y GRG++L DL+Q
Sbjct: 127 AKRRLIEANLRLVVSIAKRYAGRGLTLPDLVQ 158
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A+EE EL +I+ + ++ + Q + P +
Sbjct: 152 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAAEKMREFAEQGEKLPVAVR------- 204
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD + GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 205 --RDFNWIIRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 248
>gi|237785650|ref|YP_002906355.1| RNA polymerase sigma factor [Corynebacterium kroppenstedtii DSM
44385]
gi|237758562|gb|ACR17812.1| RNA polymerase sigma factor A [Corynebacterium kroppenstedtii DSM
44385]
Length = 621
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+S H G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 371 SRDLRSIAHDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 415
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQD-------LIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LLTA+EE +L +I+ L ++E+E KL Q
Sbjct: 145 DSVRAYLKQIGKVALLTAEEEVDLAKRIEAGLYGAERLRQVEEEGQKLSPQM-------- 196
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 197 --------RRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 241
>gi|307155201|ref|YP_003890585.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306985429|gb|ADN17310.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 295
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 23/93 (24%)
Query: 269 LLTADEEFELIAQIQDLIRL-EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
LL A +E EL Q+Q ++ L +KE PT E K + G
Sbjct: 21 LLNAQQEIELATQVQKMMALIDKEN----------PTPEE------------KRIIQQGK 58
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ K+INANLRLVV +AK+YQ RG+S DL+Q
Sbjct: 59 RAKRKMINANLRLVVSIAKKYQRRGLSFLDLIQ 91
>gi|159903877|ref|YP_001551221.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889053|gb|ABX09267.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 32/116 (27%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ S
Sbjct: 17 SDPISWYLSTIGRVPLLTPAEEIELGNQVQVMMNLTEDGSI------------------- 57
Query: 314 LSCRDLKSE---------LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
D+KSE + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 58 ----DVKSEEFTSHQRRLIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|291439967|ref|ZP_06579357.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
gi|291342862|gb|EFE69818.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
Length = 335
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 19/96 (19%)
Query: 268 KLLTADEEFELIAQIQDLI---RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 324
+LLTA++E EL +I+ + RL E+ L+ ++ RE +GL D
Sbjct: 48 RLLTAEQEVELAKRIEAGLYAERLLAEEPVLEPRYRRE---------LGLLAED------ 92
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++ L ANLRLVV VAK+Y GRG+ DL+Q
Sbjct: 93 -GRRAKNHLTEANLRLVVSVAKRYTGRGLQFMDLIQ 127
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQD-------LIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ L R E E KL Q
Sbjct: 133 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRRAEDESEKLTPQM-------- 184
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 185 --------RRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 229
>gi|21466021|pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
gi|11527292|gb|AAG36964.1|AF291720_1 sigma factor SigA [Thermus aquaticus]
Length = 438
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 183 KELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 229
>gi|384566576|ref|ZP_10013680.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522430|gb|EIE99625.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 439
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R+ E+E KL +Q
Sbjct: 137 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERLRVAEEEGEKLSTQM-------- 188
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 189 --------RRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 233
>gi|47777365|gb|AAT37999.1| putative RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 882
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
E+ L+ I++ LEK + L G E + WAKA G+ L+S L G RE+L
Sbjct: 590 EQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERL 648
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV ++AK Y G G + DLLQ
Sbjct: 649 LVTTEWLVKYIAKTYAGMGTAFEDLLQ 675
>gi|330466466|ref|YP_004404209.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
gi|328809437|gb|AEB43609.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
Length = 335
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 19/110 (17%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK---LQSQFGREPTLIEWAK 310
D +R +L G KLLTA +E EL +I+ + E++ + + +Q + TLI
Sbjct: 36 TDLVRAYLNGIGRTKLLTAAQEVELAKRIEAGLFAEEKLTTCTPVSAQLQADLTLIA--- 92
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 93 -------------QEGQAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 129
>gi|320449783|ref|YP_004201879.1| RNA polymerase sigma factor RpoD [Thermus scotoductus SA-01]
gi|320149952|gb|ADW21330.1| RNA polymerase sigma factor RpoD [Thermus scotoductus SA-01]
Length = 494
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 239 KELKRYLHLAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 285
>gi|307150096|ref|YP_003885480.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306980324|gb|ADN12205.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 298
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 21/107 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL-EKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL ++EE +L ++Q ++ L E +K L + E +IE
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEIQLATKVQKMLSLLELKKDNLAAA---EQKIIE------ 57
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G +++++I ANLRLVV +AK+YQ RG+SL DL+Q
Sbjct: 58 -----------QGQRAKQQMIQANLRLVVSIAKRYQRRGLSLLDLIQ 93
>gi|377561657|ref|ZP_09791100.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
gi|377521219|dbj|GAB36265.1| RNA polymerase sigma factor SigB [Gordonia otitidis NBRC 100426]
Length = 337
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L +
Sbjct: 39 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH----VLENRKRLTAA 85
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 86 KKRDLAIVVREGEIARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 131
>gi|333991084|ref|YP_004523698.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487052|gb|AEF36444.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 512
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A+EE EL +I+ + +K ++ G E + + + +
Sbjct: 210 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGL-FATQKMAEHAEKG-EKLAVAYRRDMAW 267
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 268 ICRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 306
>gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 476
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R E+E KL +Q
Sbjct: 174 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERVRTAEEEGEKLVTQM-------- 225
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 226 --------RRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 270
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 52/86 (60%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E E+ ++ + +E+ +++L+ + G+ +L WA A G++ + L LH G R++L+
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV+ +A+ Y+G GI+ DL+Q
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQ 363
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIR-LEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R E+E KL +Q
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERVRNAEEEGEKLVTQM-------- 215
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 216 --------RRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|384515845|ref|YP_005710937.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|397654192|ref|YP_006494875.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334697046|gb|AEG81843.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|393403148|dbj|BAM27640.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 329
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 20/110 (18%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIR----LEKEKSKLQSQFGREPTLIEWAK 310
D +R++L G LL+A++E EL I+ + LE K L
Sbjct: 30 DLVRVYLNGIGKTALLSAEDEVELAQTIEVGLYAAHLLEDSKEPLTRAM----------- 78
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -----KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|126660028|ref|ZP_01731150.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
gi|126618706|gb|EAZ89453.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
Length = 418
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 25/105 (23%)
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL-------------- 323
L+ Q D+ R+ +L + G P+ +WAKA +S +LK L
Sbjct: 109 LMKQFVDIHRIH---DQLMAYLGHRPSWEKWAKASEVSVFELKEILAQGKQQWATEANID 165
Query: 324 --------HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
SG +++++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 166 VKELDEIQKSGIRAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQ 210
>gi|72381853|ref|YP_291208.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. NATL2A]
gi|72001703|gb|AAZ57505.1| possible type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E L ++Q ++ L + + Q G P E++ A K + +G
Sbjct: 15 ELLTPEQELTLGREVQAMVALNE---RCQQAGGHGPE-CEYSSAE-------KKKFKAGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 64 RAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 96
>gi|356531599|ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 63/104 (60%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
L+ ++ G + +LL+ E L +I+ + LE+ KS+L+ + G EP+ + A ++ +S
Sbjct: 188 LKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEPSDDQMAISLKISR 247
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+L++ + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 248 TELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291
>gi|337290933|ref|YP_004629954.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
gi|334699239|gb|AEG84035.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
Length = 329
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 20/110 (18%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIR----LEKEKSKLQSQFGREPTLIEWAK 310
D +R++L G LL+A++E EL I+ + LE K L
Sbjct: 30 DLVRVYLNGIGKTALLSAEDEVELAQTIEVGLYAAHLLEDSKEPLTRAM----------- 78
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -----KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|126695941|ref|YP_001090827.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126542984|gb|ABO17226.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 11/93 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|123968168|ref|YP_001009026.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123198278|gb|ABM69919.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. AS9601]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 11/93 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|451338995|ref|ZP_21909521.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
gi|449418374|gb|EMD23965.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
Length = 466
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIR-LEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R E+E KL +Q
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERVRNAEEEGEKLVTQM-------- 215
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 216 --------RRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|254526924|ref|ZP_05138976.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
gi|221538348|gb|EEE40801.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 11/93 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|218440090|ref|YP_002378419.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172818|gb|ACK71551.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 23/107 (21%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI-RLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL ++EE +L ++Q+++ LEKE
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLEKE---------------------N 45
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L+ + K + G ++ K+I ANLRLVV +AK+YQ RG+SL DL+Q
Sbjct: 46 LTAAE-KKIVEQGQIAKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQ 91
>gi|384439196|ref|YP_005653920.1| RNA polymerase sigma factor [Thermus sp. CCB_US3_UF1]
gi|359290329|gb|AEV15846.1| RNA polymerase sigma factor [Thermus sp. CCB_US3_UF1]
Length = 435
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 180 KELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 226
>gi|357021629|ref|ZP_09083860.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
gi|356479377|gb|EHI12514.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
Length = 504
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE +L +I Q L ++ K+ +Q R+ ++
Sbjct: 202 DSVRAYLKQIGKVALLNAEEEVDLAKRIEAGLFAAQKLAEYAEKGEKIPTQLRRD---MQ 258
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
W CRD G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 259 WI------CRD-------GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 298
>gi|297820128|ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 53/86 (61%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E E+ ++ + +E+ +++L+ + G+ +L WA+A G++ + L LH G R++L+
Sbjct: 275 EAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELL 334
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV+ +A+ Y+G GI+ DL+Q
Sbjct: 335 KSTRSLVLFLARNYRGLGIAHEDLIQ 360
>gi|157412994|ref|YP_001483860.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157387569|gb|ABV50274.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 11/93 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|320334918|ref|YP_004171629.1| RpoD subfamily RNA polymerase sigma-70 factor [Deinococcus
maricopensis DSM 21211]
gi|319756207|gb|ADV67964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
maricopensis DSM 21211]
Length = 525
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT +EE L +I+ E + + +P L +
Sbjct: 223 NDPVRQYLHEIGRVPLLTLEEEISLARRIE-------EGEEARKVLDEQPELED------ 269
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R L+ ++ G ++R+ LI ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 270 RQRRRLQRQVEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQ 316
>gi|305681425|ref|ZP_07404232.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
gi|305659630|gb|EFM49130.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
Length = 608
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---KEKSKLQSQFGREPTLIEWAKA 311
D +R +L LL A++E L +I+ + + K+ K S +E L K
Sbjct: 300 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYADYRMKQMEKAYSNGDKEAKLTPAVK- 358
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 359 -----RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 402
>gi|218295160|ref|ZP_03495996.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
gi|218244363|gb|EED10888.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
Length = 439
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 184 KELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 230
>gi|78212423|ref|YP_381202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196882|gb|ABB34647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 312
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ ++ S+ + + G T
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMAFTEDGSR-EIEDGELTT--------- 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ R L L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 66 -AQRRL---LRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 108
>gi|163841160|ref|YP_001625565.1| RNA polymerase principal sigma factor [Renibacterium salmoninarum
ATCC 33209]
gi|1808669|emb|CAA71796.1| RNA polymerase [Renibacterium salmoninarum]
gi|162954636|gb|ABY24151.1| RNA polymerase principal sigma factor [Renibacterium salmoninarum
ATCC 33209]
Length = 462
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 21/124 (16%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI----RLEKEKSKLQ 296
A V++ +S G DP++ +L LL A++E +L +I+ + +L + K+
Sbjct: 150 APVQQVMSAGA-TADPVKDYLKQIGKVALLNAEQEVDLALRIEAGLYAEEKLAADDGKIT 208
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ RE +W +H G ++ L+ ANLRLVV +AK+Y GRG+
Sbjct: 209 EKLNRE---YQWV-------------IHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFL 252
Query: 357 DLLQ 360
DL+Q
Sbjct: 253 DLIQ 256
>gi|224146103|ref|XP_002325882.1| predicted protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 61/104 (58%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
L+ ++ G + ++L E L I+ + E KS+L+ + G EP+ + A ++ +S
Sbjct: 194 LKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIADSLRISR 253
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
DL+S+L + +REKL +N+RLV+ +A++Y G + DL+Q
Sbjct: 254 ADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQ 297
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ-DLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL A+EE EL +I+ L +EK + + E + + +
Sbjct: 172 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAVEKMRESAEKG---EKLPVAQRRDMT 228
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRD GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 229 WICRD-------GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 268
>gi|124025343|ref|YP_001014459.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123960411|gb|ABM75194.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. NATL1A]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 11/93 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E L ++Q ++ L + + Q G P E++ A K +G
Sbjct: 15 ELLTPEQELTLGREVQAMVALNE---RCQQAGGNGPE-CEYSSAE-------KKRFKAGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 64 RAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 96
>gi|227488742|ref|ZP_03919058.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542262|ref|ZP_03972311.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091164|gb|EEI26476.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182091|gb|EEI63063.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 327
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A+EE EL + E +P E+ +
Sbjct: 28 DLVRVYLNGIGKTPLLSAEEEVELAKTV--------EVGLYARHLLNDP---EYKPTRAM 76
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK G+ +R ++ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 77 K-RDLKELAREGDKARNHMLEANLRLVVSLAKRYSGRGMPLLDLIQ 121
>gi|297566693|ref|YP_003685665.1| RpoD subfamily RNA polymerase sigma-70 subunit [Meiothermus
silvanus DSM 9946]
gi|296851142|gb|ADH64157.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus
silvanus DSM 9946]
Length = 483
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R++K LH G +R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 228 REVKRHLHIARDGELARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 274
>gi|283795510|ref|ZP_06344663.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
gi|291077175|gb|EFE14539.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
Length = 377
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LL+A+EE +RL K K++
Sbjct: 99 LLEGIGTEDPVRMYLKEIGTVPLLSAEEE----------LRLAKRKAE------------ 136
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
S++E+LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 137 ------------------GDVSAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQ 172
>gi|78778962|ref|YP_397074.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78712461|gb|ABB49638.1| putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 11/93 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ ++I ANLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|365924947|ref|ZP_09447710.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266363|ref|ZP_14768838.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394425595|gb|EJE98541.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 374
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 44/126 (34%)
Query: 238 SRKASVKKKLSE--GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295
+ KAS +K +S G NDP+R++L LLTADEE L +I++
Sbjct: 84 AEKASSEKNVSAPAGVKINDPVRMYLKEIGRVNLLTADEEVALALKIEE----------- 132
Query: 296 QSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS-SREKLINANLRLVVHVAKQYQGRGIS 354
GN S+++L ANLRLVV +AK+Y GRG+S
Sbjct: 133 ------------------------------GNEESKQRLAEANLRLVVSIAKRYVGRGMS 162
Query: 355 LHDLLQ 360
DL+Q
Sbjct: 163 FLDLIQ 168
>gi|223975681|gb|ACN32028.1| unknown [Zea mays]
gi|413946741|gb|AFW79390.1| hypothetical protein ZEAMMB73_416951 [Zea mays]
Length = 565
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 264 PETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL 323
P R+++ E+ L++ I++ LEK + K+ + G+E + WA+A G+ +L S L
Sbjct: 265 PGQRRIIVR-EQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRL 322
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G R++L+ LV +A+ Y G G +L DLLQ
Sbjct: 323 QAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQ 359
>gi|441518658|ref|ZP_21000373.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 322
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LL A++E +L I+ + R L++ K +G
Sbjct: 24 DLVRVYLNGIGRTALLNAEQEVDLAKAIE------------VGLYARH--LLDTTKRMGP 69
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 70 ARKRDLNILVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 116
>gi|20151056|pdb|1KU2|A Chain A, Crystal Structure Of Thermus Aquaticus Rna Polymerase
Sigma Subunit Fragment Containing Regions 1.2 To 3.1
gi|20151057|pdb|1KU2|B Chain B, Crystal Structure Of Thermus Aquaticus Rna Polymerase
Sigma Subunit Fragment Containing Regions 1.2 To 3.1
Length = 241
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 92 KELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 138
>gi|225021265|ref|ZP_03710457.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
gi|224945998|gb|EEG27207.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
Length = 617
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---KEKSKLQSQFGREPTLIEWAKA 311
D +R +L LL A++E L +I+ + + K+ K S +E L K
Sbjct: 309 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYADYRMKQMEKAYSNGDKEAKLTPAVK- 367
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 368 -----RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 411
>gi|413946740|gb|AFW79389.1| sigma factor protein [Zea mays]
Length = 568
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 264 PETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL 323
P R+++ E+ L++ I++ LEK + K+ + G+E + WA+A G+ +L S L
Sbjct: 268 PGQRRIIVR-EQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRL 325
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G R++L+ LV +A+ Y G G +L DLLQ
Sbjct: 326 QAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQ 362
>gi|363420387|ref|ZP_09308479.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
gi|359735629|gb|EHK84586.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
Length = 457
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A+EE EL +I+ + +L ++ + P + + +
Sbjct: 155 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATHMLQQLAAKGEKLP--VAQRRDLNW 212
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRD GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 213 ICRD-------GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 251
>gi|162463525|ref|NP_001105185.1| sigma factor protein [Zea mays]
gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays]
Length = 568
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 264 PETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL 323
P R+++ E+ L++ I++ LEK + K+ + G+E + WA+A G+ +L S L
Sbjct: 268 PGQRRIIVR-EQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRL 325
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+G R++L+ LV +A+ Y G G +L DLLQ
Sbjct: 326 QAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQ 362
>gi|443673287|ref|ZP_21138355.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414102|emb|CCQ16693.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 476
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ-DLIRLEKEKS------KLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ L +EK + KL R+ T I
Sbjct: 174 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFAVEKMRESADKGEKLPVAQRRDMTWI- 232
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRD GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 233 --------CRD-------GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 270
>gi|307776476|pdb|3LES|A Chain A, 2f5 Epitope Scaffold Es2
gi|307776477|pdb|3LES|B Chain B, 2f5 Epitope Scaffold Es2
gi|307776478|pdb|3LEV|A Chain A, Hiv-1 Antibody 2f5 In Complex With Epitope Scaffold Es2
Length = 179
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 91 KELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 137
>gi|408532063|emb|CCK30237.1| RNA polymerase principal sigma factor hrdA [Streptomyces davawensis
JCM 4913]
Length = 437
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 19/95 (20%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSK---LQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
LLTA EE EL +++ + E++ S L SQ G DL +
Sbjct: 153 LLTAAEEVELARRVEAGLFAEEKLSNTPDLDSQLGL----------------DLDRLVVM 196
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++ +LI ANLRLVV VAK+Y GRG+++ DL+Q
Sbjct: 197 GRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 231
>gi|363899334|ref|ZP_09325843.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|395208255|ref|ZP_10397496.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
gi|361958374|gb|EHL11673.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|394705836|gb|EJF13360.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
Length = 385
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE+ L ++ Q G E
Sbjct: 106 LLEGIGTEDPVRMYLKEIGTVPLLTAEEEYSL---------------AMKKQEGDE---- 146
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+AK ++LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 147 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQ 179
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 26/113 (23%)
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN-- 327
A +E LIA+ LI + + +L +Q G +P+L WA G+ +LK + G
Sbjct: 104 VASQEEGLIARFVHLIEV---RDRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQ 160
Query: 328 --------------------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++ +I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 161 WAELAEMTVETIERIQAEGVEAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 213
>gi|359546157|pdb|3UGO|A Chain A, Crystal Structure Of Rna-Polymerase Sigma Subunit Domain 2
Complexed With -10 Promoter Element Ssdna Oligo (Tacaat)
gi|359546161|pdb|3UGP|A Chain A, Crystal Structure Of Rna-Polymerase Sigma Subunit Domain 2
Complexed With -10 Promoter Element Ssdna Oligo (Tataat)
gi|405945100|pdb|4GOR|A Chain A, Crystallographic Analysis Of An Rna-Polymerase
Sigma-Subunit Fragment Complexed With -10 Promoter
Element Ssdna: G-Quadruplex Formation And Crystal
Packing
gi|405945101|pdb|4GOR|B Chain B, Crystallographic Analysis Of An Rna-Polymerase
Sigma-Subunit Fragment Complexed With -10 Promoter
Element Ssdna: G-Quadruplex Formation And Crystal
Packing
Length = 245
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 317 RDLKSELH---SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++LK LH G ++R+ LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 96 KELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 142
>gi|145594010|ref|YP_001158307.1| RNA polymerase sigma factor SigB [Salinispora tropica CNB-440]
gi|145303347|gb|ABP53929.1| sigma-70 region 2 domain protein [Salinispora tropica CNB-440]
Length = 332
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L G KLLTA +E EL +I+ F T + +
Sbjct: 32 TDLVRAYLQGIGRTKLLTAAQEVELSRRIE------------AGLFA--ATKLATCTPVS 77
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++ R DL+ G ++++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 78 VALRADLELVAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQ 125
>gi|298715063|emb|CBJ27770.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Ectocarpus siliculosus]
Length = 737
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
RK L +EE EL +Q L + + K + GR P L + A++ GLS S + +G
Sbjct: 417 RKFLNHEEEMELGETVQRYRGLIEAQEKAEKDSGRRPRLRDVARSAGLSEEAFASVMQAG 476
Query: 327 NSSREKLINANLRLVVHVAKQYQ 349
+R+KL+ NL LVV +A +Y+
Sbjct: 477 MEARQKLVVCNLALVVSLANKYK 499
>gi|433457599|ref|ZP_20415585.1| RNA polymerase subunit sigma 28 [Arthrobacter crystallopoietes
BAB-32]
gi|432194598|gb|ELK51206.1| RNA polymerase subunit sigma 28 [Arthrobacter crystallopoietes
BAB-32]
Length = 432
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LL A++E +L +I+ + E+ KL G T +
Sbjct: 133 DPVKDYLKQIGKVALLNAEQEVDLALRIEAGLFAEE---KLAKDDGSMDTRMR------- 182
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ +H G ++ L+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 183 --RDLEQIIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 226
>gi|433603618|ref|YP_007035987.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
gi|407881471|emb|CCH29114.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
Length = 435
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI-------RLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + R E+E KL Q
Sbjct: 133 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERVRRAEEESEKLTPQL-------- 184
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL+ + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 185 --------RRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 229
>gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor SigB [Actinosynnema mirum DSM 43827]
gi|255919933|gb|ACU35444.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 330
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 225 VSKPQVTNHETYNSRKA-SVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
++ P+V + E N A SV L D +R++L G LLTA +E EL +I+
Sbjct: 1 MTVPKVLDREVGNDTSAPSVDLDLDAQGPAADLVRVYLNGIGKTALLTAAQEVELAKRIE 60
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD-LKSELHSGNSSREKLINANLRLVV 342
F ++E A+ D L++ + G ++ L+ ANLRLVV
Sbjct: 61 ------------AGVFAHH--VLETTTALNAGRADELRALVRDGLRAKNHLLEANLRLVV 106
Query: 343 HVAKQYQGRGISLHDLLQ 360
+AK+Y GRG+ L DL+Q
Sbjct: 107 SLAKRYTGRGMPLLDLIQ 124
>gi|49328110|gb|AAT58808.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 799
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
E+ L+ I++ LEK + L G E + WAKA G+ L+S L G RE+L
Sbjct: 507 EQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERL 565
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV ++AK Y G G + DLLQ
Sbjct: 566 LVTTEWLVKYIAKTYAGMGTAFEDLLQ 592
>gi|28572422|ref|NP_789202.1| RNA polymerase sigma factor [Tropheryma whipplei TW08/27]
gi|28410553|emb|CAD66939.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei
TW08/27]
Length = 387
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LLTADEE L +I+ + E+ KL P L
Sbjct: 89 DPVKDYLKQIGKVSLLTADEEVSLAKRIEAGLFAEE---KLSESGDLAPKL--------- 136
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R+L+ + G +++ L+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 137 -KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQ 181
>gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
gi|28476507|gb|AAO44596.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
Length = 387
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LLTADEE L +I+ + E+ KL P L
Sbjct: 89 DPVKDYLKQIGKVSLLTADEEVSLAKRIEAGLFAEE---KLSESGDLAPKL--------- 136
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R+L+ + G +++ L+ ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 137 -KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQ 181
>gi|373106378|ref|ZP_09520681.1| RNA polymerase sigma factor RpoD [Stomatobaculum longum]
gi|371652753|gb|EHO18161.1| RNA polymerase sigma factor RpoD [Stomatobaculum longum]
Length = 413
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 51/114 (44%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE EL + Q G E
Sbjct: 135 LLEGVGTEDPVRMYLKEIGTVPLLTAEEEMELARR---------------KQAGDE---- 175
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++KLI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 176 ---------------------KAKKKLIEANLRLVVSIAKRYTGRGMSFLDLVQ 208
>gi|416375138|ref|ZP_11683291.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
gi|357266581|gb|EHJ15189.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
Length = 418
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 43/149 (28%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK-------------------- 294
D +RL+L LLT +EE Q+Q + L + +++
Sbjct: 62 DLVRLYLQDIGRVPLLTKEEEVSKSRQVQRYVELLEIRNQAAENDDEIMKQFVQVHGIHD 121
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
L + G P+ +WAKA +S +LK L G S +++
Sbjct: 122 QLMAYLGHRPSWEKWAKASEVSVFELKEILVQGKSQWAVLANMDVAELEEIQKSGIKAKD 181
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 182 EMIKANLRLVVSVAKKYQHRGLELLDLIQ 210
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE 289
+T +T S A+++ L D +R++L G LLTA EE +L +I+
Sbjct: 1 MTVPQTITSDAAAIEADLDTQGPSADLVRVYLNGIGRTALLTAQEEVDLAKRIE------ 54
Query: 290 KEKSKLQSQFGREPTLIEWAKAIGLSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQY 348
F ++E + + R DLK+ + G ++ L+ ANLRLVV +AK+Y
Sbjct: 55 ------AGVFANH--VLETSGKLSPERRSDLKAVVRDGVLAKNHLMEANLRLVVSLAKRY 106
Query: 349 QGRGISLHDLLQ 360
GRG+ L DL+Q
Sbjct: 107 TGRGMPLLDLIQ 118
>gi|291458966|ref|ZP_06598356.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418220|gb|EFE91939.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
Length = 388
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 40/114 (35%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LL+A+EE+ L ++ Q G E
Sbjct: 109 LLEGIGTEDPVRMYLKEIGTVSLLSAEEEYAL---------------AIRKQQGDE---- 149
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+++++LI ANLRLVV +AK+Y GRG+S DL+Q
Sbjct: 150 ---------------------AAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQ 182
>gi|302560773|ref|ZP_07313115.1| RNA polymerase sigma (70) factor RpoD [Streptomyces griseoflavus
Tu4000]
gi|302478391|gb|EFL41484.1| RNA polymerase sigma (70) factor RpoD [Streptomyces griseoflavus
Tu4000]
Length = 404
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
ET S + + + + G +D R +L LLTA EE EL +++ + +EK
Sbjct: 85 ETAGSAEPASRIRPETGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGL-FAEEKL 143
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+L GL+ DL + G ++ +LI ANLRLVV VAK+Y GRG+
Sbjct: 144 RLTPDLDS-----------GLAL-DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGL 191
Query: 354 SLHDLLQ 360
++ DL+Q
Sbjct: 192 TMLDLVQ 198
>gi|159903122|ref|YP_001550466.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159888298|gb|ABX08512.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 312
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR--DL-KSELHS 325
LLT +EE + ++Q ++ L EKSKL ++ G +C DL + +
Sbjct: 16 LLTPEEELTMGRKVQAMVAL-LEKSKL-------------SEGKGEACEYTDLERRTIRQ 61
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++ ++I +NLRLVV++AK+YQG+G+ L DL+Q
Sbjct: 62 GERAKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQ 96
>gi|300784507|ref|YP_003764798.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|384147774|ref|YP_005530590.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|399536392|ref|YP_006549054.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|299794021|gb|ADJ44396.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|340525928|gb|AEK41133.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|398317162|gb|AFO76109.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
Length = 467
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ------DLIRL-EKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I+ + +R E+E KL +Q
Sbjct: 165 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAAERVRTAEEEGEKLVTQM-------- 216
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 217 --------RRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 261
>gi|67921071|ref|ZP_00514590.1| Sigma-70 region 2:Sigma-70 region 1.2 [Crocosphaera watsonii WH
8501]
gi|67857188|gb|EAM52428.1| Sigma-70 region 2:Sigma-70 region 1.2 [Crocosphaera watsonii WH
8501]
Length = 250
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 22/89 (24%)
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
+L + G P+ +WAKA +S +LK L G S +++
Sbjct: 122 QLMAYLGHRPSWEKWAKASEVSVFELKEILVQGKSQWAVLANMDVAELEEIQKSGIKAKD 181
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQ 360
++I ANLRLVV VAK+YQ RG+ L DL+Q
Sbjct: 182 EIIKANLRLVVSVAKKYQHRGLELLDLIQ 210
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 53/183 (28%)
Query: 226 SKPQVTNHETYNSRK--ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
++P N + SR+ S KK +E D +R++L +LL A+EE EL +I
Sbjct: 38 TEPDGKNRKISASRRRDTSKKKPYTE-----DSIRVYLQEIGRIRLLRAEEEIELARKIA 92
Query: 284 DLIRLEKEKSKLQSQFGREPT----------------LI----------EWAKAIGL--- 314
DL++LE+ + L + + P +I +W++ L
Sbjct: 93 DLLQLERIREALWEELDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEPKWSEVTSLLQE 152
Query: 315 --SCRDL---------------KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
+ +L K L+ G +++K++++NLRLVV +AK+Y RG+S D
Sbjct: 153 KKTISNLEKIWELEQKSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQD 212
Query: 358 LLQ 360
L+Q
Sbjct: 213 LIQ 215
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ-DLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL A+EE EL +I+ L E+ + ++S G + T+ +
Sbjct: 164 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLFSTERMRRIMES--GEKLTVAQ------ 215
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL GN ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 216 --RRDLSWIARDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 260
>gi|320161271|ref|YP_004174495.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319995124|dbj|BAJ63895.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 409
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 251 FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
D +D + L+L LLTA+EE EL +I+ + + RE E A+
Sbjct: 107 IDTDDTIGLYLKEVSRVPLLTAEEEVELAQRIE------------RGRMARE----ELAR 150
Query: 311 AIGLSCR--DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
R +L+ + G ++RE LI AN RLV+ VAK+Y GRG+ DL+Q
Sbjct: 151 GNVSPKRRQELRRLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQ 202
>gi|337290926|ref|YP_004629947.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|397654185|ref|YP_006494868.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334699232|gb|AEG84028.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|393403141|dbj|BAM27633.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 533
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG---REPTLIEWAKA 311
D +R +L LL A++E L +I+ + +++ F RE L K
Sbjct: 225 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATYRMEQMEEAFNNGDREAKLTPAVK- 283
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 284 -----RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 327
>gi|33240812|ref|NP_875754.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238341|gb|AAQ00407.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 313
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 24/112 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK-----EKSKLQSQFGREPTLIEW 308
DP+ +L LLT EE EL Q+Q ++ L + EK+K + R I
Sbjct: 17 TDPISWYLATIGRVPLLTPAEEIELGNQVQVMMNLTEDGMVNEKTKKFTSHERRSIRI-- 74
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++E+++ ANLRLVV VAK+YQG+G+ L DL+Q
Sbjct: 75 -----------------GRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|392400748|ref|YP_006437348.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis Cp162]
gi|390531826|gb|AFM07555.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis Cp162]
Length = 329
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL I+ L + E + +A+
Sbjct: 30 DLVRVYLNGIGKTALLSAEDEVELAQTIE---------VGLYAAHLLEDSEEPLTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|384515838|ref|YP_005710930.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
gi|334697039|gb|AEG81836.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
Length = 533
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG---REPTLIEWAKA 311
D +R +L LL A++E L +I+ + +++ F RE L K
Sbjct: 225 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATYRMEQMEEAFNNGDREAKLTPAVK- 283
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 284 -----RDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 327
>gi|297605001|ref|NP_001056480.2| Os05g0589200 [Oryza sativa Japonica Group]
gi|255676623|dbj|BAF18394.2| Os05g0589200, partial [Oryza sativa Japonica Group]
Length = 464
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
E+ L+ I++ LEK + L G E + WAKA G+ L+S L G RE+L
Sbjct: 265 EQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERL 323
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQ 360
+ LV ++AK Y G G + DLLQ
Sbjct: 324 LVTTEWLVKYIAKTYAGMGTAFEDLLQ 350
>gi|300858635|ref|YP_003783618.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|375288814|ref|YP_005123355.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|379715514|ref|YP_005303851.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|383314397|ref|YP_005375252.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|384504818|ref|YP_005681488.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|384506912|ref|YP_005683581.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|384508999|ref|YP_005685667.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|384511091|ref|YP_005690669.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|385807697|ref|YP_005844094.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|386740547|ref|YP_006213727.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|387136741|ref|YP_005692721.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|387138813|ref|YP_005694792.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387140805|ref|YP_005696783.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389850565|ref|YP_006352800.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
gi|300686089|gb|ADK29011.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|302206344|gb|ADL10686.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|302330901|gb|ADL21095.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|308276586|gb|ADO26485.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|341825030|gb|AEK92551.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|348607186|gb|AEP70459.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|349735291|gb|AEQ06769.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355392596|gb|AER69261.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|371576103|gb|AEX39706.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|377654220|gb|AFB72569.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|380869898|gb|AFF22372.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|383805090|gb|AFH52169.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|384477241|gb|AFH91037.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|388247871|gb|AFK16862.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
Length = 329
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL I+ L + E + +A+
Sbjct: 30 DLVRVYLNGIGKTALLSAEDEVELAQTIE---------VGLYAAHLLEDSEEPLTRAM-- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+Q
Sbjct: 79 -KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 123
>gi|269925486|ref|YP_003322109.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269789146|gb|ACZ41287.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 338
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 18/111 (16%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR-EPTLIEWAK 310
D +D +R++L LLTA++E EL +++ R +K +S L S G+ EP
Sbjct: 38 DLDDSVRMYLREIGLVPLLTAEQEVELAKKME---RGKKAQSVLDS--GKYEP------- 85
Query: 311 AIGLSCRD-LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RD L +E+ G +R LI ANLRLVV VAK++ RG+SL DL++
Sbjct: 86 ----EQRDKLLAEVDEGERARRHLIEANLRLVVSVAKKHMNRGLSLLDLIE 132
>gi|269926941|ref|YP_003323564.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269790601|gb|ACZ42742.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 596
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+ G+ +R++LI ANLRLVV +AK+Y GRGI+L DL+Q
Sbjct: 249 IAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQ 286
>gi|29832222|ref|NP_826856.1| RNA polymerase sigma factor [Streptomyces avermitilis MA-4680]
gi|29609340|dbj|BAC73391.1| putative RNA polymerase sigma factor [Streptomyces avermitilis
MA-4680]
Length = 389
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 19/95 (20%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKS---KLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
LLTA EE EL +++ + E++ S L SQ G DL +
Sbjct: 105 LLTAAEEVELARRVEAGLFAEEKLSSTPDLDSQLGL----------------DLDKLVVM 148
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
G ++ +LI ANLRLVV VAK+Y GRG+++ DL+Q
Sbjct: 149 GRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 183
>gi|379715508|ref|YP_005303845.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
gi|377654214|gb|AFB72563.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
Length = 521
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A++E L +I+ + +++ F + + A+
Sbjct: 213 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATYRMEQMEEAFNKGDKEAKLTPAV-- 270
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 271 -KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 315
>gi|387140798|ref|YP_005696776.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355392589|gb|AER69254.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
Length = 517
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A++E L +I+ + +++ F + + A+
Sbjct: 209 DSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATYRMEQMEEAFNKGDKEAKLTPAV-- 266
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
RDL++ G ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 267 -KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 311
>gi|282859310|ref|ZP_06268422.1| sigma-70 region 2 [Prevotella bivia JCVIHMP010]
gi|424898995|ref|ZP_18322541.1| RNA polymerase sigma factor, sigma-70 family [Prevotella bivia DSM
20514]
gi|282587890|gb|EFB93083.1| sigma-70 region 2 [Prevotella bivia JCVIHMP010]
gi|388593209|gb|EIM33447.1| RNA polymerase sigma factor, sigma-70 family [Prevotella bivia DSM
20514]
Length = 290
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 12/67 (17%)
Query: 298 QFGREPTL-----IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+ GREP + IE A+ I R G ++EKLI ANLR VV VAKQYQ +G
Sbjct: 24 EIGREPMITVDEEIELAQEIHKGGR-------KGERAKEKLIKANLRFVVSVAKQYQHQG 76
Query: 353 ISLHDLL 359
+SL DL+
Sbjct: 77 LSLTDLI 83
>gi|289758831|ref|ZP_06518209.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289714395|gb|EFD78407.1| predicted protein [Mycobacterium tuberculosis T85]
Length = 330
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 23/113 (20%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q + L + KL + R+ I
Sbjct: 228 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWI- 286
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+Q
Sbjct: 287 --------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 324
>gi|219849586|ref|YP_002464019.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219543845|gb|ACL25583.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 314
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 34/42 (80%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
L +++ +G +R +LIN+NLRLVV +A++YQG G++L DL+Q
Sbjct: 64 LAAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQ 105
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,138,022,940
Number of Sequences: 23463169
Number of extensions: 198260663
Number of successful extensions: 872130
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4268
Number of HSP's successfully gapped in prelim test: 938
Number of HSP's that attempted gapping in prelim test: 862670
Number of HSP's gapped (non-prelim): 9392
length of query: 361
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 217
effective length of database: 8,980,499,031
effective search space: 1948768289727
effective search space used: 1948768289727
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 77 (34.3 bits)