Query 018068
Match_columns 361
No_of_seqs 29 out of 31
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 05:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2913 Predicted membrane pro 94.5 0.16 3.5E-06 48.7 8.1 200 95-331 5-215 (260)
2 PF04193 PQ-loop: PQ loop repe 90.4 0.37 8.1E-06 35.1 3.5 51 282-333 3-53 (61)
3 smart00679 CTNS Repeated motif 56.1 11 0.00024 24.4 2.2 28 297-325 4-31 (32)
4 PF04193 PQ-loop: PQ loop repe 53.5 20 0.00043 26.0 3.5 43 109-157 12-54 (61)
5 PF06752 E_Pc_C: Enhancer of P 45.1 22 0.00047 34.5 3.2 46 23-69 134-179 (230)
6 PF06570 DUF1129: Protein of u 41.2 2.8E+02 0.006 25.2 10.9 30 239-268 166-195 (206)
7 TIGR00951 2A43 Lysosomal Cysti 39.8 31 0.00068 32.1 3.3 49 281-330 4-52 (220)
8 PRK01061 Na(+)-translocating N 36.2 1.9E+02 0.004 28.5 8.0 151 161-315 22-191 (244)
9 PF06729 CENP-R: Kinetochore c 33.8 27 0.00058 31.8 1.8 23 52-74 4-26 (139)
10 COG3952 Predicted membrane pro 32.5 21 0.00046 31.4 1.0 41 134-174 54-94 (113)
11 PRK11660 putative transporter; 31.3 6E+02 0.013 26.6 11.2 109 93-203 273-393 (568)
12 TIGR00951 2A43 Lysosomal Cysti 29.2 4.8E+02 0.01 24.4 10.4 43 106-154 11-53 (220)
13 TIGR03068 srtB_sig_NPQTN sorta 27.2 46 0.001 23.9 1.7 32 306-337 1-32 (33)
14 PF09622 DUF2391: Putative int 26.6 1.8E+02 0.004 28.6 6.2 118 82-231 128-254 (267)
15 COG2056 Predicted permease [Ge 24.3 1.1E+02 0.0024 32.2 4.5 66 135-204 195-281 (444)
16 PF02508 Rnf-Nqr: Rnf-Nqr subu 24.0 1.9E+02 0.0042 26.7 5.6 149 162-317 16-172 (190)
17 PF02652 Lactate_perm: L-lacta 23.8 1.5E+02 0.0032 31.4 5.3 51 215-269 202-253 (522)
18 PRK05151 electron transport co 22.7 6.5E+02 0.014 23.7 9.6 151 161-316 15-173 (193)
19 PF03083 MtN3_slv: Sugar efflu 20.0 1.3E+02 0.0028 23.3 3.2 66 285-351 7-72 (87)
No 1
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=94.54 E-value=0.16 Score=48.74 Aligned_cols=200 Identities=23% Similarity=0.260 Sum_probs=109.7
Q ss_pred hhhHHhhhhcccchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHHHhh-ccccceeEEeeeh-hh
Q 018068 95 WNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIK-KREKEAIVVQTLG-VV 172 (361)
Q Consensus 95 Wds~T~~l~~~a~ipFL~LqlPQIi~Na~nl~~Gn~~AL~av~W~g~ltGLLGNL~LLSYFA~-KrE~~A~~VQ~vG-Vv 172 (361)
|+.+---++..+++=-.....|||++|++.=-+.--..++.+.|+. |...-+.|+-- ..+- ...+|++= .+
T Consensus 5 ~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wli------gdi~nl~g~~l~~~~~-~~~~~~~yy~~ 77 (260)
T KOG2913|consen 5 NDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLI------GDIFNLVGFFLQPLGS-TLKVQAVYYTL 77 (260)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHH------ccHHHHHHHHhcccch-hHHHHHHHHHH
Confidence 3444444444455445567789999999999999999999999973 33333333321 1111 12222221 12
Q ss_pred hhHHHHHHHHhhcCC-C-hhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhHHHHhhhccCCCCCC
Q 018068 173 STYVVISQLAVGEAM-P-MPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSI 250 (361)
Q Consensus 173 St~iVL~QLa~Ag~M-P-~~~F~~ts~~Va~GlvLn~l~yf~~l~~~~W~lWe~~i~igGlavlPQVmwsTf~P~iP~si 250 (361)
+..++++|..--+.. | -|.+... . ...-.+|..++++---.-|-|. .+-
T Consensus 78 ~d~~l~~q~~yy~~~~~~~pll~~~---------------------s------~~s~~~~~~~~~~~~~~~~~~~--~~~ 128 (260)
T KOG2913|consen 78 ADSVLFVQCLYYGNIYPREPLLPVP---------------------S------FRSLLGGLEALLILSIKLFSPR--FVK 128 (260)
T ss_pred HHHHHHHHHHhcchhcccCcccccc---------------------c------hhhhhcchHHHHHHHhhccCcc--hhh
Confidence 223333444332222 1 1111100 0 0001122334444333333332 233
Q ss_pred chhH-HHHHHHHHHHHHHHhcCCChhH------HhHhhhcchhhHHHHHHhhcHHHHHhhcCCCCCcccchHHHHHHHHH
Q 018068 251 LPGT-IAFVVGVATVVMARMGKLSKQG------VKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMI 323 (361)
Q Consensus 251 LPg~-i~~~~~~~~Vv~ar~gkL~~k~------~~f~~~lSgWTATLLFMwmPVaQm~tN~lnP~nl~GLS~~T~LLAm~ 323 (361)
.|-. .++...+.....+...+++.+. ..-.+...||...+++|+..++|+.-|+. =.+-+|+|.+--+++++
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~-~~s~eGls~~~F~~~~~ 207 (260)
T KOG2913|consen 129 WPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHL-RKSTEGLSLLAFAFNSL 207 (260)
T ss_pred ccchhhhhHHHHHHHHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhc-cCccchhHHHHHHHHHc
Confidence 3333 3333333333343333333322 34578889999999999999999999986 46789999999999999
Q ss_pred hcccchhh
Q 018068 324 GNGLLIPR 331 (361)
Q Consensus 324 GNgLMlPR 331 (361)
||---.+-
T Consensus 208 ~n~~y~~s 215 (260)
T KOG2913|consen 208 GNTTYILS 215 (260)
T ss_pred cccccccc
Confidence 99876654
No 2
>PF04193 PQ-loop: PQ loop repeat
Probab=90.38 E-value=0.37 Score=35.10 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=43.8
Q ss_pred hcchhhHHHHHHhhcHHHHHhhcCCCCCcccchHHHHHHHHHhcccchhhhh
Q 018068 282 AISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRAL 333 (361)
Q Consensus 282 ~lSgWTATLLFMwmPVaQm~tN~lnP~nl~GLS~~T~LLAm~GNgLMlPRAL 333 (361)
..-||.++.+....-+.|+..|+-+ .+-+|+|..+.++..+||.+.+==.+
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~k~-ks~~glS~~~~~l~~~g~~~~~~~~~ 53 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNYKR-KSTGGLSLWFLLLWLIGSILWVLYSI 53 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHc-cccccccHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999 55599999999999999987664433
No 3
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=56.06 E-value=11 Score=24.36 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=25.1
Q ss_pred HHHHHhhcCCCCCcccchHHHHHHHHHhc
Q 018068 297 VSQMWTNFLNPDNIKGLSASSMLLAMIGN 325 (361)
Q Consensus 297 VaQm~tN~lnP~nl~GLS~~T~LLAm~GN 325 (361)
+.|++.|+-+= +.+|+|....++-.+|+
T Consensus 4 ~PQi~~~~~~k-s~~glS~~~~~l~~~G~ 31 (32)
T smart00679 4 LPQIIKNYRRK-STEGLSILFVLLWLLGD 31 (32)
T ss_pred hhHHHHHHHcC-CcCcCCHHHHHHHHhcC
Confidence 68999999886 88999999999999887
No 4
>PF04193 PQ-loop: PQ loop repeat
Probab=53.47 E-value=20 Score=26.03 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=27.6
Q ss_pred hhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHHHhh
Q 018068 109 PFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSYFIK 157 (361)
Q Consensus 109 pFL~LqlPQIi~Na~nl~~Gn~~AL~av~W~g~ltGLLGNL~LLSYFA~ 157 (361)
=..+..+|||++|.|+=-++ . ++-.-.+-.+.||+..+.|.--
T Consensus 12 ~~~~~~lPQi~~~~k~ks~~---g---lS~~~~~l~~~g~~~~~~~~~~ 54 (61)
T PF04193_consen 12 LWIISFLPQIIKNYKRKSTG---G---LSLWFLLLWLIGSILWVLYSIL 54 (61)
T ss_pred HHHHHHHhHHHHHHHccccc---c---ccHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999974443 3 3344445556677776666543
No 5
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=45.09 E-value=22 Score=34.54 Aligned_cols=46 Identities=28% Similarity=0.310 Sum_probs=40.0
Q ss_pred CCCcccccCCCcccccccCCCccccCcccccccceeccccccccccc
Q 018068 23 YPDCLSTSQSLPLKSLSVNKPAGKLNNVLFISHYTLATLHRRLSPVS 69 (361)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrl~pv~ 69 (361)
-++|-++.|.||-...|.+-+.+. +.|+-++.-+-.-..|++.||.
T Consensus 134 ~a~~~~t~Q~L~gnn~~l~vp~~~-~~v~~vsp~~~~h~pRtl~~vp 179 (230)
T PF06752_consen 134 TALCTSTTQVLIGNNIRLSVPSHL-STVNSVSPLNVRHNPRTLSPVP 179 (230)
T ss_pred ccCCCCCceecccCccccccCccc-ccccccccccccccccccCCCc
Confidence 467889999999999998877776 8899999999999999999887
No 6
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=41.20 E-value=2.8e+02 Score=25.20 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=19.8
Q ss_pred HhhhccCCCCCCchhHHHHHHHHHHHHHHH
Q 018068 239 WSTFVPTIPNSILPGTIAFVVGVATVVMAR 268 (361)
Q Consensus 239 wsTf~P~iP~siLPg~i~~~~~~~~Vv~ar 268 (361)
...+.|...|-.+|+.+..++++++.+..+
T Consensus 166 ~~~~lp~~inp~l~~~~~iiig~i~~~~~~ 195 (206)
T PF06570_consen 166 LTSFLPPVINPVLPPWVYIIIGVIAFALRF 195 (206)
T ss_pred HHHHccccCCcCCCHHHHHHHHHHHHHHHH
Confidence 445566555667888887777777665443
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=39.80 E-value=31 Score=32.08 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=42.3
Q ss_pred hhcchhhHHHHHHhhcHHHHHhhcCCCCCcccchHHHHHHHHHhcccchh
Q 018068 281 RAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIP 330 (361)
Q Consensus 281 ~~lSgWTATLLFMwmPVaQm~tN~lnP~nl~GLS~~T~LLAm~GNgLMlP 330 (361)
...-||+.....+..-+.|++.|+-+ .+.+|+|.....+.++||....-
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~k~-ks~~GlS~~~~~l~~~g~~~~~~ 52 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNWRR-KSAEGLSFDFVMLNLVGFTAYVI 52 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhc-cccCCcCHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999955 67899999999999999976553
No 8
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=36.24 E-value=1.9e+02 Score=28.46 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=91.5
Q ss_pred cceeEEeeehhhhhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhc-------ch----hHHHHHHHHHHhh
Q 018068 161 KEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNML-------NA----GLWRFWEDVITVG 229 (361)
Q Consensus 161 ~~A~~VQ~vGVvSt~iVL~QLa~Ag~MP~~~F~~ts~~Va~GlvLn~l~yf~~l-------~~----~~W~lWe~~i~ig 229 (361)
.+.+.+|.+|+|+...|-.++.-+-.|=++...+..+..++...+ |++-.. ++ --.+.=|-..-|.
T Consensus 22 nN~vl~~~LG~Cp~LaVS~~~~~a~gMGlAvtfVl~~S~~i~~~l---~~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIl 98 (244)
T PRK01061 22 QNILLSNFLGMCSYLACSSRLSTANGLGMSVALVLTVTGSINWFV---HAFITGPGALTWLSPALANVNLSFLELIIFIV 98 (244)
T ss_pred hhHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHccchhhccccccccccchHHHHHHHHHH
Confidence 456678999999999998888877777666655554444444433 332221 11 1122234444455
Q ss_pred hhhhhhHHHHhhhccCCCC-----CCchhHHH---HHHHHHHHHHHHhcCCChhHHhHhhhcchhhHHHHHHhhcHHHHH
Q 018068 230 GLTALPQVIWSTFVPTIPN-----SILPGTIA---FVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMW 301 (361)
Q Consensus 230 GlavlPQVmwsTf~P~iP~-----siLPg~i~---~~~~~~~Vv~ar~gkL~~k~~~f~~~lSgWTATLLFMwmPVaQm~ 301 (361)
=++.+=|+......-+.|. +++-..|. .+++.+....++...+-+......+.=-|||-.++.| .-+.+..
T Consensus 99 vIA~~Vq~vem~L~a~~p~Ly~aLGifLPLIttNCaVLG~al~~~~~~~~~~~S~~~Glg~GlGftLALvl~-a~iRErL 177 (244)
T PRK01061 99 VIAAFTQILELLLEKVSRNLYLSLGIFLPLIAVNCAILGGVLFGITRNYPFIPMMIFSLGAGCGWWLAIVLF-ATIREKL 177 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 4566666553333222221 33333343 4555555556666666677777778778888876655 5688888
Q ss_pred hhcCCCCCcccchH
Q 018068 302 TNFLNPDNIKGLSA 315 (361)
Q Consensus 302 tN~lnP~nl~GLS~ 315 (361)
..-.=|+..+|+..
T Consensus 178 ~~~~iP~~~~G~pI 191 (244)
T PRK01061 178 AYSDVPKNLQGMGI 191 (244)
T ss_pred ccCCCCccccchhH
Confidence 87777999999876
No 9
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=33.81 E-value=27 Score=31.78 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=19.4
Q ss_pred ccccceecccccccccccCCCCC
Q 018068 52 FISHYTLATLHRRLSPVSAGDSD 74 (361)
Q Consensus 52 ~~~~~~~~~~~rrl~pv~~~~s~ 74 (361)
.++-|+++|+|++++|.++-.++
T Consensus 4 ~~~~yspttgt~q~sp~sSp~s~ 26 (139)
T PF06729_consen 4 SITSYSPTTGTCQMSPFSSPTSS 26 (139)
T ss_pred cccccCCCCCceeecCCCCCCcc
Confidence 46789999999999999887653
No 10
>COG3952 Predicted membrane protein [Function unknown]
Probab=32.49 E-value=21 Score=31.41 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=32.8
Q ss_pred hhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhh
Q 018068 134 LAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVST 174 (361)
Q Consensus 134 ~av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ~vGVvSt 174 (361)
.++|-.=--.++||-+++||||-.+++..-+.-|+.|....
T Consensus 54 sv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~ 94 (113)
T COG3952 54 SVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIY 94 (113)
T ss_pred CcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHH
Confidence 45555555689999999999999999998888888776543
No 11
>PRK11660 putative transporter; Provisional
Probab=31.30 E-value=6e+02 Score=26.61 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=65.5
Q ss_pred hhhhhHHhhhhcccchhhhhhhhhHHHHHHHHh--hcCCc----chhhhhchhHHHhhhhhhhhhHHHHhhcc--cccee
Q 018068 93 EEWNSLTAKFSGAANIPFMLLQLPQIILNARNL--LAGNK----AALLAVPWLGMLTGLLGNLSLLSYFIKKR--EKEAI 164 (361)
Q Consensus 93 ~~Wds~T~~l~~~a~ipFL~LqlPQIi~Na~nl--~~Gn~----~AL~av~W~g~ltGLLGNL~LLSYFA~Kr--E~~A~ 164 (361)
-+|+.+.+-+..+-.+++.-. =+.+.+++-+ .+|++ --|.+..---.++|++|..--..++.+.. ++.+.
T Consensus 273 ~~~~~~~~ll~~a~~iaiv~~--iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGa 350 (568)
T PRK11660 273 LSWDLIRALLPAAFSMAMLGA--IESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGA 350 (568)
T ss_pred cCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCC
Confidence 478888888877776665432 2223333322 23322 24557777778889999888877776542 22233
Q ss_pred EEeeehhhhhHHHHHHH-H---hhcCCChhHHHHHHHHHHHHH
Q 018068 165 VVQTLGVVSTYVVISQL-A---VGEAMPMPHFIAISVVVATGL 203 (361)
Q Consensus 165 ~VQ~vGVvSt~iVL~QL-a---~Ag~MP~~~F~~ts~~Va~Gl 203 (361)
-=|..|+++..+++.=+ . +-..+|.++..+.=++++.++
T Consensus 351 rT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m 393 (568)
T PRK11660 351 TSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNM 393 (568)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 34667788777666543 2 346778888766555554443
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=29.19 E-value=4.8e+02 Score=24.38 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=28.1
Q ss_pred cchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHH
Q 018068 106 ANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSY 154 (361)
Q Consensus 106 a~ipFL~LqlPQIi~Na~nl~~Gn~~AL~av~W~g~ltGLLGNL~LLSY 154 (361)
..+.-.+...|||++|.++ ++..++ |=....--++||...+.|
T Consensus 11 ~~~~~~~~~~PQi~~n~k~---ks~~Gl---S~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 11 YVAAWSISFYPQIIKNWRR---KSAEGL---SFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHhhHHHHHHhc---cccCCc---CHHHHHHHHHHHHHHHHH
Confidence 3445567889999999975 333333 333445567788777777
No 13
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=27.19 E-value=46 Score=23.93 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=28.0
Q ss_pred CCCCcccchHHHHHHHHHhcccchhhhhhhhh
Q 018068 306 NPDNIKGLSASSMLLAMIGNGLLIPRALFIRD 337 (361)
Q Consensus 306 nP~nl~GLS~~T~LLAm~GNgLMlPRALFiRD 337 (361)
||+.=.|--..+-+...++=.||+-|++|.|.
T Consensus 1 NPQTs~gtp~y~y~Ip~v~lflL~~~~i~~~~ 32 (33)
T TIGR03068 1 NPQTNAGTPAYIYAIPVASLALLIAITLFVRK 32 (33)
T ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhcc
Confidence 78888888888888889998999999999984
No 14
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=26.60 E-value=1.8e+02 Score=28.65 Aligned_cols=118 Identities=22% Similarity=0.329 Sum_probs=71.0
Q ss_pred cccccCCchhhhhhhhHHhhhhcccchhhhhhhhhHHHHHHHHhhcCCcchhhhhchhHHHhhhhhhhhhHHH-------
Q 018068 82 ESANFRSNKAFEEWNSLTAKFSGAANIPFMLLQLPQIILNARNLLAGNKAALLAVPWLGMLTGLLGNLSLLSY------- 154 (361)
Q Consensus 82 ~~~~~~~~~~~~~Wds~T~~l~~~a~ipFL~LqlPQIi~Na~nl~~Gn~~AL~av~W~g~ltGLLGNL~LLSY------- 154 (361)
.|+++++..+...|+++.+.+.|+-.+.|=+.--=.++.=|.++-.=|.-++.+++ +..+|
T Consensus 128 ~~~~~~~~~~~~~~~Dl~q~~vGA~~lA~p~apTeEvw~lA~~ms~~~~l~l~~~s------------L~i~y~fvy~a~ 195 (267)
T PF09622_consen 128 EEEEEEDKPERGYLADLGQMIVGALFLAFPFAPTEEVWLLAAKMSPWHALALVLLS------------LAIMYLFVYKAG 195 (267)
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCHHHHHHHHHHH------------HHHHHHHHHhhc
Confidence 33444557788899999999999998888777777888877776554444444332 22333
Q ss_pred Hh--hccccceeEEeeehhhhhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Q 018068 155 FI--KKREKEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGL 231 (361)
Q Consensus 155 FA--~KrE~~A~~VQ~vGVvSt~iVL~QLa~Ag~MP~~~F~~ts~~Va~GlvLn~l~yf~~l~~~~W~lWe~~i~igGl 231 (361)
|. +|||++.-+.| .++-.+=. -| ..+++++. =.|..|+++..+-|..|=+.+-++|+
T Consensus 196 f~~~~~~~~~~g~~~------~~l~~tiv---------sY-~isl~vsl----~~L~~f~~~~~~~~~~~l~ativl~~ 254 (267)
T PF09622_consen 196 FRGQHKREEQRGIFQ------RFLRFTIV---------SY-LISLLVSL----LMLWFFGRLDGDPWSQWLKATIVLGL 254 (267)
T ss_pred cCCccchhhccCccc------hhHHHHHH---------HH-HHHHHHHH----HHHHHhcccCCCCHHHHHHHHHhhhh
Confidence 22 24555543333 22211100 01 11222222 25567888888899999998888774
No 15
>COG2056 Predicted permease [General function prediction only]
Probab=24.28 E-value=1.1e+02 Score=32.19 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=44.3
Q ss_pred hhchhHHHhhhhhhhhhHHHHhhccccceeEEe--------------------eehhhhhHHHHHHHH-hhcCCChhHHH
Q 018068 135 AVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQ--------------------TLGVVSTYVVISQLA-VGEAMPMPHFI 193 (361)
Q Consensus 135 av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ--------------------~vGVvSt~iVL~QLa-~Ag~MP~~~F~ 193 (361)
.+|=+||+.|||= -+.-.+.|.||-+-...+ .++++.+++ .|+. ..+.||+..+.
T Consensus 195 ~ip~lgMi~GLl~--ai~~~YrKpReY~~~~~~~~~~~~~~~~~~~~~~~~~alvaiv~af~--vQl~~~~~smilgal~ 270 (444)
T COG2056 195 WIPGLGMIVGLLL--AIFVSYRKPREYQTNEIEEAENAIEDYAALEEYKLALALVAIVVAFA--VQLLTFTDSMILGALA 270 (444)
T ss_pred HHHHHHHHHHHHH--HHHHhhcCCccccccccchhhhhhhhhcchhhHHHHHHHHHHHHHHH--HHHHhccccchHHHHH
Confidence 5677889888762 222235677876622111 256666654 5876 89999999998
Q ss_pred HHHHHHHHHHH
Q 018068 194 AISVVVATGLV 204 (361)
Q Consensus 194 ~ts~~Va~Glv 204 (361)
...+++..|.+
T Consensus 271 gliv~~~~gv~ 281 (444)
T COG2056 271 GLIVFFLSGVI 281 (444)
T ss_pred HHHHHHHhcce
Confidence 88888777755
No 16
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=23.96 E-value=1.9e+02 Score=26.67 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=84.3
Q ss_pred ceeEEeeehhhhhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhHHHHhh
Q 018068 162 EAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWST 241 (361)
Q Consensus 162 ~A~~VQ~vGVvSt~iVL~QLa~Ag~MP~~~F~~ts~~Va~GlvLn~l~yf~~l~~~~W~lWe~~i~igGlavlPQVmwsT 241 (361)
+-+.+|.+|+|+...+=.++.-|-.|=++.. -+.+....+-..+|.+-..+ -+.-|-..-+.=++.+=|.....
T Consensus 16 N~vl~~~LGlcp~l~vs~~~~~a~~mGlav~---~V~~~s~~~~~~l~~~il~p---~~~lr~~~~ilviA~~v~~v~~~ 89 (190)
T PF02508_consen 16 NPVLVQFLGLCPFLAVSTSLENALGMGLAVT---FVLTLSSVLISLLRNFILAP---PSYLRIIVFILVIASLVQLVEMV 89 (190)
T ss_pred HHHHHHHHHhcchhhhcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899988887777666555543332 22334444555556555444 33334444455555555555433
Q ss_pred hccCCCC-----CCchhHHH---HHHHHHHHHHHHhcCCChhHHhHhhhcchhhHHHHHHhhcHHHHHhhcCCCCCcccc
Q 018068 242 FVPTIPN-----SILPGTIA---FVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKGL 313 (361)
Q Consensus 242 f~P~iP~-----siLPg~i~---~~~~~~~Vv~ar~gkL~~k~~~f~~~lSgWTATLLFMwmPVaQm~tN~lnP~nl~GL 313 (361)
..-+.|+ +++.+.+. .+++.+.....+...+.+......+.--||+..++.+- =+.+...+=-=|+..+|+
T Consensus 90 l~~~~p~l~~~LgiylpLi~~Nc~VLg~~~~~~~~~~~~~~s~~~glg~glGf~lal~l~a-~iRE~l~~g~ip~~~~g~ 168 (190)
T PF02508_consen 90 LRAYFPSLYKALGIYLPLITVNCAVLGRAEFFASKGYSFLESLVDGLGAGLGFTLALVLLA-GIRERLGSGTIPESFRGL 168 (190)
T ss_pred HHHHCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcccCCC
Confidence 3333332 23333332 33333333344436677777888888889988877653 466666555559899998
Q ss_pred hHHH
Q 018068 314 SASS 317 (361)
Q Consensus 314 S~~T 317 (361)
....
T Consensus 169 pi~~ 172 (190)
T PF02508_consen 169 PIAL 172 (190)
T ss_pred chHH
Confidence 7654
No 17
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=23.85 E-value=1.5e+02 Score=31.45 Aligned_cols=51 Identities=31% Similarity=0.572 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHHhhhhhhhhHHHHhhhccCCCCCCchhHHHHHHHHHHHH-HHHh
Q 018068 215 NAGLWRFWEDVITVGGLTALPQVIWSTFVPTIPNSILPGTIAFVVGVATVV-MARM 269 (361)
Q Consensus 215 ~~~~W~lWe~~i~igGlavlPQVmwsTf~P~iP~siLPg~i~~~~~~~~Vv-~ar~ 269 (361)
..+..+.|-.++-.|.....||..-+.|.- |+ +|+.+++++++...+ +.|.
T Consensus 202 ~k~~r~~~p~~L~~g~~~~~~~~~~a~~~g--pe--l~~i~g~l~~l~~~~~~~r~ 253 (522)
T PF02652_consen 202 WKGVREVWPFALVAGLSFAIPQWLVANFLG--PE--LPGILGGLVGLAVLVLFLRF 253 (522)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc--cchHHHHHHHHHHHHHHHHH
Confidence 366788999998888889999999888873 33 677887666665554 5665
No 18
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=22.70 E-value=6.5e+02 Score=23.73 Aligned_cols=151 Identities=14% Similarity=0.176 Sum_probs=86.5
Q ss_pred cceeEEeeehhhhhHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhhhhhHHHHh
Q 018068 161 KEAIVVQTLGVVSTYVVISQLAVGEAMPMPHFIAISVVVATGLVLNFLNYFNMLNAGLWRFWEDVITVGGLTALPQVIWS 240 (361)
Q Consensus 161 ~~A~~VQ~vGVvSt~iVL~QLa~Ag~MP~~~F~~ts~~Va~GlvLn~l~yf~~l~~~~W~lWe~~i~igGlavlPQVmws 240 (361)
.+.+.+|.+|+|+...|-.++.-+=.|=++...+.....+.. +.+|.+-..+-+ .+.=|-..-|.=++.+=|+..-
T Consensus 15 nN~vl~~~LG~Cp~laVs~~~~~a~gmGlav~fV~~~s~~~~---~~i~~~il~p~~-l~~lr~~~fIlvIA~~V~~ve~ 90 (193)
T PRK05151 15 NNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASICA---WLVNTYILIPLD-LIYLRTLAFILVIAVVVQFTEM 90 (193)
T ss_pred hhHHHHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345567999999998888888777666555444433333322 233333322211 1112333334445555555533
Q ss_pred hhccCCCC-----CCchhHHH---HHHHHHHHHHHHhcCCChhHHhHhhhcchhhHHHHHHhhcHHHHHhhcCCCCCccc
Q 018068 241 TFVPTIPN-----SILPGTIA---FVVGVATVVMARMGKLSKQGVKFVRAISGWTATLLFMWMPVSQMWTNFLNPDNIKG 312 (361)
Q Consensus 241 Tf~P~iP~-----siLPg~i~---~~~~~~~Vv~ar~gkL~~k~~~f~~~lSgWTATLLFMwmPVaQm~tN~lnP~nl~G 312 (361)
...-+.|+ +++-..|. .+++.+....++...+-|......+.--|||-.+..| .-+.+....--=|+..||
T Consensus 91 ~l~~~~p~Ly~~LGiflpLI~tNCaVLG~al~~~~~~~~~~~s~~~glg~GlGf~lal~ll-a~iRErl~~~~vP~~~~G 169 (193)
T PRK05151 91 VVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFGAAVGFSLVLVLF-AAIRERLAVADVPAPFRG 169 (193)
T ss_pred HHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCcccCC
Confidence 22222222 22323332 4555555556666777788888888888999877655 457777766666999999
Q ss_pred chHH
Q 018068 313 LSAS 316 (361)
Q Consensus 313 LS~~ 316 (361)
+...
T Consensus 170 ~pI~ 173 (193)
T PRK05151 170 AAIA 173 (193)
T ss_pred ccHH
Confidence 8754
No 19
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=20.02 E-value=1.3e+02 Score=23.30 Aligned_cols=66 Identities=11% Similarity=0.207 Sum_probs=51.4
Q ss_pred hhhHHHHHHhhcHHHHHhhcCCCCCcccchHHHHHHHHHhcccchhhhhhhhhhhhhccchhHHhhh
Q 018068 285 GWTATLLFMWMPVSQMWTNFLNPDNIKGLSASSMLLAMIGNGLLIPRALFIRDFMWFTGSSWATLFY 351 (361)
Q Consensus 285 gWTATLLFMwmPVaQm~tN~lnP~nl~GLS~~T~LLAm~GNgLMlPRALFiRD~mW~tGS~W~~~~~ 351 (361)
|=.+++.++..|+.|+.+-.-+ .+-+++|....+...+++.+-+==.+.++|..=+..+.=|+.++
T Consensus 7 ~~~~~i~~~~spl~~i~~v~k~-ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~ 72 (87)
T PF03083_consen 7 ASVSSIIMFLSPLPQIRQVIKT-KSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLS 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHH
Confidence 3456788999999999998877 67799999999998888888888888888875555555554443
Done!