Query 018068
Match_columns 361
No_of_seqs 29 out of 31
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 09:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pt5_A NANS (YJHS), A 9-O-acet 26.1 22 0.00074 34.7 1.3 43 80-122 189-245 (337)
2 3v2y_A Sphingosine 1-phosphate 16.1 4.1E+02 0.014 24.6 7.6 46 133-187 66-111 (520)
3 2z73_A Rhodopsin; visual pigme 16.0 1.1E+02 0.0038 27.3 3.6 28 133-160 37-64 (448)
4 3eml_A Human adenosine A2A rec 15.1 1.3E+02 0.0044 26.6 3.7 47 132-187 23-69 (488)
5 4dkl_A MU-type opioid receptor 15.0 1.4E+02 0.0047 26.2 3.9 45 133-186 20-64 (464)
6 3rze_A Histamine H1 receptor, 14.7 1.5E+02 0.0052 25.9 4.0 47 277-323 369-417 (452)
7 4amj_A Beta-1 adrenergic recep 14.2 1.6E+02 0.0056 24.0 3.9 47 132-187 13-59 (315)
8 1zxu_A AT5G01750 protein; PFAM 13.6 40 0.0014 29.1 0.1 19 20-38 6-24 (217)
9 3vw7_A Proteinase-activated re 12.7 1.7E+02 0.0057 26.0 3.8 45 133-186 23-67 (484)
10 4ea3_A Fusion protein of nocic 12.2 1.8E+02 0.0061 26.1 3.8 46 132-186 127-172 (434)
No 1
>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase, 9-O-acetyl N-acetylneuraminic acid esterase, structural genomics; 1.60A {Escherichia coli O157}
Probab=26.13 E-value=22 Score=34.66 Aligned_cols=43 Identities=5% Similarity=0.087 Sum_probs=29.2
Q ss_pred CccccccCCc--hh------------hhhhhhHHhhhhcccchhhhhhhhhHHHHHH
Q 018068 80 HQESANFRSN--KA------------FEEWNSLTAKFSGAANIPFMLLQLPQIILNA 122 (361)
Q Consensus 80 h~~~~~~~~~--~~------------~~~Wds~T~~l~~~a~ipFL~LqlPQIi~Na 122 (361)
||||.+.... .. +++|+.++++......+||++-|++..+++.
T Consensus 189 yQGESN~~~~~~~~Y~~~f~~LI~~wR~d~~~~~~q~~~~~~lPFi~gqL~~f~~~~ 245 (337)
T 3pt5_A 189 MQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTTWYWKEN 245 (337)
T ss_dssp ECCTGGGGSTTGGGHHHHHHHHHHHHHHHHGGGGGGCC---CCCEEEECCCHHHHHH
T ss_pred ecCCccccCcCHHHHHHHHHHHHHHHHHHHcccccccccCCCCCEEEEECchhhhcc
Confidence 8998887653 33 3445555555545779999999999988776
No 2
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=16.06 E-value=4.1e+02 Score=24.64 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=32.8
Q ss_pred hhhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhhHHHHHHHHhhcCC
Q 018068 133 LLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAM 187 (361)
Q Consensus 133 L~av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ~vGVvSt~iVL~QLa~Ag~M 187 (361)
+.++-+.-.+.|++||++.+--+.++|... -.+++.|.-||++..+
T Consensus 66 ~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr---------~~~~~~l~nLA~aDll 111 (520)
T 3v2y_A 66 TSVVFILICCFIILENIFVLLTIWKTKKFH---------RPMYYFIGNLALSDLL 111 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTC---------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccc---------ChHHHHHHHHHHHHHH
Confidence 456677778899999999988777666532 1356677777777643
No 3
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=16.01 E-value=1.1e+02 Score=27.30 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=20.9
Q ss_pred hhhhchhHHHhhhhhhhhhHHHHhhccc
Q 018068 133 LLAVPWLGMLTGLLGNLSLLSYFIKKRE 160 (361)
Q Consensus 133 L~av~W~g~ltGLLGNL~LLSYFA~KrE 160 (361)
+.++-..-.+.|++||++++--+.++|.
T Consensus 37 ~~i~~~ii~i~gi~gN~lvi~vi~~~~~ 64 (448)
T 2z73_A 37 LGIFIGICGIIGCGGNGIVIYLFTKTKS 64 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHhhHHHhhhhhhhccc
Confidence 3455566678999999999887766654
No 4
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=15.10 E-value=1.3e+02 Score=26.60 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=30.7
Q ss_pred hhhhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhhHHHHHHHHhhcCC
Q 018068 132 ALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAM 187 (361)
Q Consensus 132 AL~av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ~vGVvSt~iVL~QLa~Ag~M 187 (361)
.+.++-..-.+.|++||++.+--+..++... -.+++.|..||++..+
T Consensus 23 ~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~---------~~~~~~l~~La~aDll 69 (488)
T 3eml_A 23 VYITVELAIAVLAILGNVLVCWAVWLNSNLQ---------NVTNYFVVSLAAADIA 69 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC---------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeccccC---------ChHHHHHHHHHHHHHH
Confidence 4445666677899999999997776655422 1245666666666543
No 5
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=14.97 E-value=1.4e+02 Score=26.21 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=29.7
Q ss_pred hhhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhhHHHHHHHHhhcC
Q 018068 133 LLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEA 186 (361)
Q Consensus 133 L~av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ~vGVvSt~iVL~QLa~Ag~ 186 (361)
+.++-..-.+.|++||++++--+.+++... -.+++.+.-||++..
T Consensus 20 ~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~---------~~~~~~l~~La~~Dl 64 (464)
T 4dkl_A 20 IMALYSIVCVVGLFGNFLVMYVIVRYTKMK---------TATNIYIFNLALADA 64 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTC---------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHeehhhhhccccC---------CHHHHHHHHHHHHHH
Confidence 344555567889999999998887665432 134566666666664
No 6
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=14.67 E-value=1.5e+02 Score=25.94 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=31.5
Q ss_pred HhHhhhcchhhHHHHHHhhcH--HHHHhhcCCCCCcccchHHHHHHHHH
Q 018068 277 VKFVRAISGWTATLLFMWMPV--SQMWTNFLNPDNIKGLSASSMLLAMI 323 (361)
Q Consensus 277 ~~f~~~lSgWTATLLFMwmPV--aQm~tN~lnP~nl~GLS~~T~LLAm~ 323 (361)
+|...-+-.=+.+++..|.|. ..++..+.....-+.+...+.+|+.+
T Consensus 369 ~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~L~~~ 417 (452)
T 3rze_A 369 RKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYI 417 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 455666677788899999994 35555554555556666677776665
No 7
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=14.20 E-value=1.6e+02 Score=24.03 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=31.7
Q ss_pred hhhhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhhHHHHHHHHhhcCC
Q 018068 132 ALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEAM 187 (361)
Q Consensus 132 AL~av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ~vGVvSt~iVL~QLa~Ag~M 187 (361)
.+.++-..-.+.|++||++++--+.++|... -++.+.+.-||+++.+
T Consensus 13 ~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~---------~~~~~ll~~LaiaDll 59 (315)
T 4amj_A 13 GMSLLMALVVLLIVAGNVLVIAAIGSTQRLQ---------TLTNLFITSLACADLV 59 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC---------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhchhhc---------chHHHHHHHHHHHHHH
Confidence 4445566678899999999988886665532 1345666667766543
No 8
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=13.64 E-value=40 Score=29.07 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=0.4
Q ss_pred CccCCCcccccCCCccccc
Q 018068 20 FYRYPDCLSTSQSLPLKSL 38 (361)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~ 38 (361)
-||||+|-.+++--|+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (217)
T 1zxu_A 6 VYAYPQGSGPSGAPTPQAG 24 (217)
T ss_dssp ------------------C
T ss_pred EEeCCCCCCCCCCCCCCCc
Confidence 3999999999888777653
No 9
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=12.67 E-value=1.7e+02 Score=26.02 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=28.9
Q ss_pred hhhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhhHHHHHHHHhhcC
Q 018068 133 LLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEA 186 (361)
Q Consensus 133 L~av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ~vGVvSt~iVL~QLa~Ag~ 186 (361)
+.++-..-.+.|++||++.+--+..+|... -.+++.|..||++..
T Consensus 23 ~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~---------~~~~~~l~~La~aDl 67 (484)
T 3vw7_A 23 VPSVYTGVFVVSLPLNIMAIVVFILKMKVK---------KPAVVYMLHLATADV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGC---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC---------CHHHHHHHHHHHHHH
Confidence 445555667889999999887666655422 134556666666554
No 10
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=12.22 E-value=1.8e+02 Score=26.07 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=31.2
Q ss_pred hhhhhchhHHHhhhhhhhhhHHHHhhccccceeEEeeehhhhhHHHHHHHHhhcC
Q 018068 132 ALLAVPWLGMLTGLLGNLSLLSYFIKKREKEAIVVQTLGVVSTYVVISQLAVGEA 186 (361)
Q Consensus 132 AL~av~W~g~ltGLLGNL~LLSYFA~KrE~~A~~VQ~vGVvSt~iVL~QLa~Ag~ 186 (361)
.+.++-..-.+.|++||++++--+.++|... -.+++.+..||++..
T Consensus 127 ~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~---------~~~~~ll~~LAvsDl 172 (434)
T 4ea3_A 127 TIVGLYLAVCVGGLLGNCLVMYVILRHTKMK---------TATNIYIFNLALADT 172 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeeeecCccC---------chhHHHHHHHHHHHH
Confidence 4455666677889999999888666665532 145666667776664
Done!