Query 018068
Match_columns 361
No_of_seqs 29 out of 31
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 09:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018068.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018068hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tska_ g.3.7.2 (A:) Toxin ts 16.6 16 0.0012 23.6 0.3 16 18-33 5-20 (35)
2 d1u19a_ f.13.1.2 (A:) Rhodopsi 13.2 65 0.0047 25.2 3.3 53 277-330 248-303 (348)
3 d1fcqa_ c.1.8.9 (A:) Bee venom 10.1 33 0.0024 30.9 0.5 12 19-30 173-184 (321)
4 d1guua_ a.4.1.3 (A:) c-Myb, DN 8.5 49 0.0035 21.3 0.7 12 297-308 39-50 (50)
5 d1h9aa1 c.2.1.3 (A:1-181,A:413 8.3 61 0.0045 26.2 1.4 12 118-129 184-195 (195)
6 d1t07a_ d.279.1.1 (A:) Hypothe 5.5 1.4E+02 0.01 21.9 2.0 20 208-227 30-49 (81)
7 d1gvda_ a.4.1.3 (A:) c-Myb, DN 5.3 1.3E+02 0.0095 19.4 1.6 12 297-308 41-52 (52)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 4.9 1.3E+02 0.0098 19.3 1.4 16 285-300 7-22 (36)
9 d2coaa1 b.55.1.1 (A:8-119) Pro 4.8 2.5E+02 0.018 19.1 3.0 46 20-65 31-79 (112)
10 d1coja1 a.2.11.1 (A:2-90) Fe s 4.7 1.4E+02 0.01 21.1 1.5 17 303-319 8-24 (89)
No 1
>d1tska_ g.3.7.2 (A:) Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxId: 6887]}
Probab=16.63 E-value=16 Score=23.55 Aligned_cols=16 Identities=44% Similarity=0.893 Sum_probs=11.7
Q ss_pred CCCccCCCcccccCCC
Q 018068 18 EPFYRYPDCLSTSQSL 33 (361)
Q Consensus 18 ~~~~~~~~~~~~~~~~ 33 (361)
..-||-|||.|.-..|
T Consensus 5 qrcyrspdcysackkl 20 (35)
T d1tska_ 5 QRCYRSPDCYSACKKL 20 (35)
T ss_dssp CCCSSSCSSHHHHHHH
T ss_pred ccccCCccHHHHHHHH
Confidence 3469999999875443
No 2
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.22 E-value=65 Score=25.22 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=29.1
Q ss_pred HhHhhhcchhhHHHHHHhhc--HHHHHhhcCCCCCccc-chHHHHHHHHHhcccchh
Q 018068 277 VKFVRAISGWTATLLFMWMP--VSQMWTNFLNPDNIKG-LSASSMLLAMIGNGLLIP 330 (361)
Q Consensus 277 ~~f~~~lSgWTATLLFMwmP--VaQm~tN~lnP~nl~G-LS~~T~LLAm~GNgLMlP 330 (361)
+|...-+-.=+.+.++.|+| +..++....++++..- +...+.+++ .-|...=|
T Consensus 248 ~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~~ns~iNP 303 (348)
T d1u19a_ 248 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFA-KTSAVYNP 303 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHG-GGGGTHHH
T ss_pred hhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHH-HHHHHHHH
Confidence 44445556666778889999 4455555555555443 333444443 34554444
No 3
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]}
Probab=10.12 E-value=33 Score=30.94 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=10.0
Q ss_pred CCccCCCccccc
Q 018068 19 PFYRYPDCLSTS 30 (361)
Q Consensus 19 ~~~~~~~~~~~~ 30 (361)
-||.||||-...
T Consensus 173 GyYlfPdCyN~~ 184 (321)
T d1fcqa_ 173 GYYAYPYCYNLT 184 (321)
T ss_dssp EEBTCSCCCTTS
T ss_pred ccccccccccCC
Confidence 599999998753
No 4
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.53 E-value=49 Score=21.33 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=9.6
Q ss_pred HHHHHhhcCCCC
Q 018068 297 VSQMWTNFLNPD 308 (361)
Q Consensus 297 VaQm~tN~lnP~ 308 (361)
+.+=|+|++||+
T Consensus 39 cr~Rw~~~L~P~ 50 (50)
T d1guua_ 39 CQHRWQKVLNPE 50 (50)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHhhCCCC
Confidence 667788888886
No 5
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=8.32 E-value=61 Score=26.17 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=9.5
Q ss_pred HHHHHHHhhcCC
Q 018068 118 IILNARNLLAGN 129 (361)
Q Consensus 118 Ii~Na~nl~~Gn 129 (361)
.+.|-||||+||
T Consensus 184 ~v~~iqnlm~~~ 195 (195)
T d1h9aa1 184 YERMIHDTMNGD 195 (195)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhcCC
Confidence 357888899887
No 6
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.48 E-value=1.4e+02 Score=21.88 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.0
Q ss_pred HHHHhhcchhHHHHHHHHHH
Q 018068 208 LNYFNMLNAGLWRFWEDVIT 227 (361)
Q Consensus 208 l~yf~~l~~~~W~lWe~~i~ 227 (361)
-+.|.-++.+.|+.|.+--|
T Consensus 30 ~~I~~~vSk~AW~~Wl~~Qt 49 (81)
T d1t07a_ 30 EDIYNNVSRKAWDEWQKHQT 49 (81)
T ss_dssp HHHHHHCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 46678889999999988544
No 7
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.28 E-value=1.3e+02 Score=19.41 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=8.8
Q ss_pred HHHHHhhcCCCC
Q 018068 297 VSQMWTNFLNPD 308 (361)
Q Consensus 297 VaQm~tN~lnP~ 308 (361)
+.+=|+|++||+
T Consensus 41 c~~Rw~~~L~P~ 52 (52)
T d1gvda_ 41 CRERWHNHLNPE 52 (52)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHhhCCCC
Confidence 556678888885
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.90 E-value=1.3e+02 Score=19.34 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=12.8
Q ss_pred hhhHHHHHHhhcHHHH
Q 018068 285 GWTATLLFMWMPVSQM 300 (361)
Q Consensus 285 gWTATLLFMwmPVaQm 300 (361)
|-.||+||...|-+-+
T Consensus 7 g~iAt~LFilvPt~FL 22 (36)
T d2axtm1 7 GLIATALFVLVPSVFL 22 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6789999999986644
No 9
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.82 E-value=2.5e+02 Score=19.14 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=22.6
Q ss_pred CccCCCcccccCCCcccccccCCCccccCc---ccccccceeccccccc
Q 018068 20 FYRYPDCLSTSQSLPLKSLSVNKPAGKLNN---VLFISHYTLATLHRRL 65 (361)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~rrl 65 (361)
||+-+..-.....+||+..+...++..... -...--|.+.|..|+.
T Consensus 31 YYk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~rty 79 (112)
T d2coaa1 31 LFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATY 79 (112)
T ss_dssp EESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCCC
T ss_pred EEeccCCCccceEEeeeccccccccccccccccCCCccEEEEEeCCeEE
Confidence 555555444455567766554433322111 1122236777777754
No 10
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]}
Probab=4.73 E-value=1.4e+02 Score=21.05 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=14.1
Q ss_pred hcCCCCCcccchHHHHH
Q 018068 303 NFLNPDNIKGLSASSML 319 (361)
Q Consensus 303 N~lnP~nl~GLS~~T~L 319 (361)
.++.|..++|+|.-||=
T Consensus 8 d~lep~~~~gIs~~tm~ 24 (89)
T d1coja1 8 DHLKPQNLEGISNEQIE 24 (89)
T ss_dssp GGGCCCSCSSSCHHHHH
T ss_pred cccCcccccccCHHHHH
Confidence 46789999999998873
Done!