Query 018069
Match_columns 361
No_of_seqs 177 out of 2050
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 4E-10 1.4E-14 88.8 6.3 71 254-324 34-105 (137)
2 3b5d_A Multidrug transporter E 98.7 1.3E-07 4.4E-12 71.8 11.5 69 255-323 35-104 (110)
3 3b5d_A Multidrug transporter E 98.6 5.1E-07 1.8E-11 68.4 10.9 69 76-150 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.6 1.5E-07 5.2E-12 73.9 7.4 69 76-150 34-103 (137)
5 1pw4_A Glycerol-3-phosphate tr 79.3 36 0.0012 30.7 24.5 36 12-49 95-132 (451)
6 3rko_J NADH-quinone oxidoreduc 44.1 1.2E+02 0.0042 24.3 14.4 33 291-323 127-161 (184)
7 2jp3_A FXYD domain-containing 39.8 15 0.00052 24.0 1.9 18 307-324 23-40 (67)
8 4aps_A DI-OR tripeptide H+ sym 37.3 2.4E+02 0.0081 25.6 17.9 15 17-31 157-171 (491)
9 2zxe_G FXYD10, phospholemman-l 34.3 27 0.00094 23.3 2.5 20 307-326 25-44 (74)
10 3l1l_A Arginine/agmatine antip 27.2 3.4E+02 0.012 24.3 17.3 45 282-326 386-430 (445)
11 2jo1_A Phospholemman; FXYD1, N 20.6 41 0.0014 22.2 1.4 18 307-324 22-39 (72)
12 4aps_A DI-OR tripeptide H+ sym 20.2 4.7E+02 0.016 23.4 14.6 20 191-210 63-83 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.01 E-value=4e-10 Score=88.76 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeecc-chhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHhhccc
Q 018069 254 YSGLVASAMSFAVQIWVIDRGGPMFVSAY-LPVQTMLVAIMATIALGEEFYLGGVIGASLIIAGLYLVVLGK 324 (361)
Q Consensus 254 ~~~~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~ge~~s~~~~iG~~lil~g~~l~~~~~ 324 (361)
.++++++++++.++++++++.+++++..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35666789999999999999999999999 899999999999999999999999999999999999887543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.74 E-value=1.3e-07 Score=71.77 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeeecc-chhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHhhcc
Q 018069 255 SGLVASAMSFAVQIWVIDRGGPMFVSAY-LPVQTMLVAIMATIALGEEFYLGGVIGASLIIAGLYLVVLG 323 (361)
Q Consensus 255 ~~~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~ge~~s~~~~iG~~lil~g~~l~~~~ 323 (361)
.++++...++.++.+++|+.+.+.+.++ ..+.|+++.+++++++||++++.+++|+.+|+.|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4555678999999999999999999888 89999999999999999999999999999999999888654
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.59 E-value=5.1e-07 Score=68.42 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=62.6
Q ss_pred HHHHHHHHHhHHHHHhhccCCCcchhhhh-ccchhHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHH
Q 018069 76 LLGLVGITLNQGSYIFGLDNTSPIFASAV-ENAVPAVTFIMAVLLRIEQIHLTRKDGIAKVLGTLISVGGASVITL 150 (361)
Q Consensus 76 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~lla~~~l~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 150 (361)
..+.+...+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++++ +++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45555667889999999999999999888 79999999999999999999997 99999999999999863
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=1.5e-07 Score=73.95 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=52.7
Q ss_pred HHHHHHHHHhHHHHHhhccCCCcchhhhh-ccchhHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHH
Q 018069 76 LLGLVGITLNQGSYIFGLDNTSPIFASAV-ENAVPAVTFIMAVLLRIEQIHLTRKDGIAKVLGTLISVGGASVITL 150 (361)
Q Consensus 76 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~lla~~~l~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 150 (361)
..+++...+++.++.+++++.+++.+..+ .++.|++++++++++++|+++++ +++|+.+.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666677899999999999999999888 89999999999999999999997 99999999999999874
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=79.25 E-value=36 Score=30.74 Aligned_cols=36 Identities=11% Similarity=-0.113 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--hcCCCccHHHHHHHHHHHH
Q 018069 12 MTIFQFGYAGNHVIMRTAL--NMGVSKLVFPLYRNIIAVI 49 (361)
Q Consensus 12 ~l~~~~~~~~~~~~~k~~~--~~~~~p~~~~~~r~~~~~l 49 (361)
++.+.++++...+..-... . -+...+...|.+.+..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHH
Confidence 4445555555555443311 2 2455666777766543
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=44.06 E-value=1.2e+02 Score=24.27 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=23.7
Q ss_pred HHHHHHHhcCccchhhHHHHHHHH--HHHHHhhcc
Q 018069 291 AIMATIALGEEFYLGGVIGASLII--AGLYLVVLG 323 (361)
Q Consensus 291 ~l~~~~~~ge~~s~~~~iG~~lil--~g~~l~~~~ 323 (361)
--+|..++++-.-+.+..+..+.+ +|.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888899998899999987765 354444433
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=39.79 E-value=15 Score=24.02 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhccc
Q 018069 307 VIGASLIIAGLYLVVLGK 324 (361)
Q Consensus 307 ~iG~~lil~g~~l~~~~~ 324 (361)
++++++.++|+++....+
T Consensus 23 ifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 456667777777776554
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=37.29 E-value=2.4e+02 Score=25.59 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 018069 17 FGYAGNHVIMRTALN 31 (361)
Q Consensus 17 ~~~~~~~~~~k~~~~ 31 (361)
+.....+.+.....+
T Consensus 157 ~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 157 LGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444455555444
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=34.30 E-value=27 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 018069 307 VIGASLIIAGLYLVVLGKDE 326 (361)
Q Consensus 307 ~iG~~lil~g~~l~~~~~~~ 326 (361)
++++++.++|+++...++-|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45667777787777655443
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=27.22 E-value=3.4e+02 Score=24.32 Aligned_cols=45 Identities=7% Similarity=-0.118 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHhhccccc
Q 018069 282 YLPVQTMLVAIMATIALGEEFYLGGVIGASLIIAGLYLVVLGKDE 326 (361)
Q Consensus 282 ~~~~~pv~~~l~~~~~~ge~~s~~~~iG~~lil~g~~l~~~~~~~ 326 (361)
....-++++.+...+..-.........|...++.|+.++.+.+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445555555443332222234556888888888777655444
No 11
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.57 E-value=41 Score=22.20 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhccc
Q 018069 307 VIGASLIIAGLYLVVLGK 324 (361)
Q Consensus 307 ~iG~~lil~g~~l~~~~~ 324 (361)
++++++.++|+++....+
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 345666667766665443
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=20.19 E-value=4.7e+02 Score=23.45 Aligned_cols=20 Identities=5% Similarity=-0.248 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHhhh-CC
Q 018069 191 HCLFWSSWIVLQSPVLKK-YP 210 (361)
Q Consensus 191 a~~~~a~~~v~~~~~~~~-~~ 210 (361)
..+...+......++.++ ..
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344445555555566666 44
Done!