Query 018069
Match_columns 361
No_of_seqs 177 out of 2050
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 09:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018069.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018069hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 72.8 25 0.0018 29.4 26.1 14 35-48 115-128 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 47.1 71 0.0052 26.2 14.1 36 192-228 69-104 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 39.3 44 0.0032 25.6 7.4 29 288-316 95-123 (222)
4 d1pv7a_ f.38.1.2 (A:) Lactose 36.2 96 0.007 24.6 13.5 30 13-42 17-48 (417)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 25.7 35 0.0025 16.1 2.8 19 183-201 3-21 (27)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 15.0 62 0.0045 24.2 3.6 30 288-317 77-106 (199)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 8.5 1.3E+02 0.0092 14.4 2.3 16 288-303 13-28 (30)
8 d1q90a3 f.23.23.1 (A:248-292) 6.6 2.2E+02 0.016 15.4 4.2 30 180-209 3-32 (45)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 5.1 7.7E+02 0.056 20.2 12.4 62 34-95 265-336 (472)
10 d2axth1 f.23.33.1 (H:2-65) Pho 4.5 3.6E+02 0.027 15.7 3.8 27 175-201 22-48 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=72.83 E-value=25 Score=29.40 Aligned_cols=14 Identities=14% Similarity=-0.088 Sum_probs=8.2
Q ss_pred CccHHHHHHHHHHH
Q 018069 35 SKLVFPLYRNIIAV 48 (361)
Q Consensus 35 ~p~~~~~~r~~~~~ 48 (361)
+...+...|.+.+.
T Consensus 115 ~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGW 128 (447)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45556666666554
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.15 E-value=71 Score=26.19 Aligned_cols=36 Identities=3% Similarity=-0.031 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhHhhhCCChhHHHHHHHHHHHHHHH
Q 018069 192 CLFWSSWIVLQSPVLKKYPARLSVVSYSCFFSLMQFS 228 (361)
Q Consensus 192 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 228 (361)
.+.+++.....-++.++.. +-.......+...+...
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~~ 104 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVML 104 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHh
Confidence 4444555555556666665 43444444444444333
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=39.33 E-value=44 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.008 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHH
Q 018069 288 MLVAIMATIALGEEFYLGGVIGASLIIAG 316 (361)
Q Consensus 288 v~~~l~~~~~~ge~~s~~~~iG~~lil~g 316 (361)
+.+.+.+..+.+.+++....+|.++.++-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 44555667778999999888887775543
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=36.22 E-value=96 Score=24.55 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHH-HHHh-cCCCccHHHHH
Q 018069 13 TIFQFGYAGNHVIMR-TALN-MGVSKLVFPLY 42 (361)
Q Consensus 13 l~~~~~~~~~~~~~k-~~~~-~~~~p~~~~~~ 42 (361)
++..+.++....... +..+ .|.++.++...
T Consensus 17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i 48 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGII 48 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 344445554443333 2333 25777775544
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.66 E-value=35 Score=16.13 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018069 183 LGCICLIGHCLFWSSWIVL 201 (361)
Q Consensus 183 ~G~~~~l~a~~~~a~~~v~ 201 (361)
+|.+.+-+++++||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 6888888899999888644
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.03 E-value=62 Score=24.18 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHH
Q 018069 288 MLVAIMATIALGEEFYLGGVIGASLIIAGL 317 (361)
Q Consensus 288 v~~~l~~~~~~ge~~s~~~~iG~~lil~g~ 317 (361)
+........++|.+++.....+..++++..
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~igi~ 106 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIGLL 106 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Confidence 333444456678888887777776666543
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.50 E-value=1.3e+02 Score=14.35 Aligned_cols=16 Identities=13% Similarity=0.112 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcCccc
Q 018069 288 MLVAIMATIALGEEFY 303 (361)
Q Consensus 288 v~~~l~~~~~~ge~~s 303 (361)
+++..+-.++|+|+|.
T Consensus 13 ~i~lfffaiffreppr 28 (30)
T d2axtt1 13 IIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3334444455666653
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.60 E-value=2.2e+02 Score=15.42 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhhhC
Q 018069 180 NWTLGCICLIGHCLFWSSWIVLQSPVLKKY 209 (361)
Q Consensus 180 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~ 209 (361)
....|.+..+.+.+..-+..++-||-.++.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888877765543
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.08 E-value=7.7e+02 Score=20.19 Aligned_cols=62 Identities=6% Similarity=0.124 Sum_probs=31.0
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHH------hhccCC----CCCCHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 018069 34 VSKLVFPLYRNIIAVIVLVPFAYF------LEKKDR----PTLTYSFLLQFFLLGLVGITLNQGSYIFGLDN 95 (361)
Q Consensus 34 ~~p~~~~~~r~~~~~l~l~~~~~~------~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 95 (361)
++|.++.+.-++.-.+....+..- -+++++ +..+++.+......|..-.......+++...+
T Consensus 265 l~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~ 336 (472)
T d1wpga4 265 LIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMY 336 (472)
T ss_dssp CCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888877776655544444320 011111 12345555555555554333455555555554
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.52 E-value=3.6e+02 Score=15.65 Aligned_cols=27 Identities=0% Similarity=-0.215 Sum_probs=18.6
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH
Q 018069 175 DTKEKNWTLGCICLIGHCLFWSSWIVL 201 (361)
Q Consensus 175 ~~~~~~~~~G~~~~l~a~~~~a~~~v~ 201 (361)
...+....+|.++++.+.+..-+-.++
T Consensus 22 PGWGTTplMgv~m~Lf~vfl~iiLeiY 48 (64)
T d2axth1 22 PGWGTTPLMAVFMGLFLVFLLIILEIY 48 (64)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788888888777766554444
Done!