BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018070
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 114/298 (38%), Gaps = 41/298 (13%)
Query: 76 SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
P ++ T + G G+ A +R +L+ + P+ + VC CL +
Sbjct: 4 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMR 63
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCR---SQGLKYP----LLVKRLAC 188
Q A++C C+ A W C+ S +YP L+ R+
Sbjct: 64 CSQCRVAKYCSAKCQKKA-----------WPDHKRECKCLKSCKPRYPPDSVRLLGRVVF 112
Query: 189 MIISGA--ESADCIDILQPASLSPELILAMEEGF---VMLRSAFKKAGIDDEQMKFLNKQ 243
++ GA ES S +L +EG VM F + I D
Sbjct: 113 KLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFD 172
Query: 244 WYTNVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAH 303
+ A++ N+F I VG +Y S NH CDPN
Sbjct: 173 LF-EAFAKVICNSFTI----------------CNAEMQEVGVGLYPSISLLNHSCDPNCS 215
Query: 304 IMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
I++ + L A+RD+E GEEL ICY+D M + R+ L + F+C+C RC + D
Sbjct: 216 IVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD 272
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 114/298 (38%), Gaps = 41/298 (13%)
Query: 76 SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
P ++ T + G G+ A +R +L+ + P+ + VC CL +
Sbjct: 2 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMR 61
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCR---SQGLKYP----LLVKRLAC 188
Q A++C C+ A W C+ S +YP L+ R+
Sbjct: 62 CSQCRVAKYCSAKCQKKA-----------WPDHKRECKCLKSCKPRYPPDSVRLLGRVVF 110
Query: 189 MIISGA--ESADCIDILQPASLSPELILAMEEGF---VMLRSAFKKAGIDDEQMKFLNKQ 243
++ GA ES S +L +EG VM F + I D
Sbjct: 111 KLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFD 170
Query: 244 WYTNVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAH 303
+ A++ N+F I VG +Y S NH CDPN
Sbjct: 171 LF-EAFAKVICNSFTI----------------CNAEMQEVGVGLYPSISLLNHSCDPNCS 213
Query: 304 IMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
I++ + L A+RD+E GEEL ICY+D M + R+ L + F+C+C RC + D
Sbjct: 214 IVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD 270
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 114/298 (38%), Gaps = 41/298 (13%)
Query: 76 SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
P ++ T + G G+ A +R +L+ + P+ + VC CL +
Sbjct: 2 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMR 61
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCR---SQGLKYP----LLVKRLAC 188
Q A++C C+ A W C+ S +YP L+ R+
Sbjct: 62 CSQCRVAKYCSAKCQKKA-----------WPDHKRECKCLKSCKPRYPPDSVRLLGRVVF 110
Query: 189 MIISGA--ESADCIDILQPASLSPELILAMEEGF---VMLRSAFKKAGIDDEQMKFLNKQ 243
++ GA ES S +L +EG VM F + I D
Sbjct: 111 KLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFD 170
Query: 244 WYTNVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAH 303
+ A++ N+F I VG +Y S NH CDPN
Sbjct: 171 LF-EAFAKVICNSFTI----------------CNAEMQEVGVGLYPSISLLNHSCDPNCS 213
Query: 304 IMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
I++ + L A+RD+E GEEL ICY+D M + R+ L + F+C+C RC + D
Sbjct: 214 IVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD 270
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 114/298 (38%), Gaps = 41/298 (13%)
Query: 76 SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
P ++ T + G G+ A +R +L+ + P+ + VC CL +
Sbjct: 3 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMR 62
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCR---SQGLKYP----LLVKRLAC 188
Q A++C C+ A W C+ S +YP L+ R+
Sbjct: 63 CSQCRVAKYCSAKCQKKA-----------WPDHKRECKCLKSCKPRYPPDSVRLLGRVVF 111
Query: 189 MIISGA--ESADCIDILQPASLSPELILAMEEGF---VMLRSAFKKAGIDDEQMKFLNKQ 243
++ GA ES S +L +EG VM F + I D
Sbjct: 112 KLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFD 171
Query: 244 WYTNVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAH 303
+ A++ N+F I VG +Y S NH CDPN
Sbjct: 172 LF-EAFAKVICNSFTI----------------CNAEMQEVGVGLYPSISLLNHSCDPNCS 214
Query: 304 IMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
I++ + L A+RD+E GEEL ICY+D M + R+ L + F+C+C RC + D
Sbjct: 215 IVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD 271
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 114/298 (38%), Gaps = 41/298 (13%)
Query: 76 SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
P ++ T + G G+ A +R +L+ + P+ + VC CL +
Sbjct: 38 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMR 97
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCR---SQGLKYP----LLVKRLAC 188
Q A++C C+ A W C+ S +YP L+ R+
Sbjct: 98 CSQCRVAKYCSAKCQKKA-----------WPDHKRECKCLKSCKPRYPPDSVRLLGRVVF 146
Query: 189 MIISGA--ESADCIDILQPASLSPELILAMEEGF---VMLRSAFKKAGIDDEQMKFLNKQ 243
++ GA ES S +L +EG VM F + I D
Sbjct: 147 KLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFD 206
Query: 244 WYTNVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAH 303
+ A++ N+F I VG +Y S NH CDPN
Sbjct: 207 LF-EAFAKVICNSFTI----------------CNAEMQEVGVGLYPSISLLNHSCDPNCS 249
Query: 304 IMWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
I++ + L A+RD+E GEEL ICY+D M + R+ L + F+C+C RC + D
Sbjct: 250 IVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD 306
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 113/297 (38%), Gaps = 39/297 (13%)
Query: 76 SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
P ++ T + G G+ A +R +L+ + P+ + VC CL +
Sbjct: 3 EPLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXR 62
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCR---SQGLKYP----LLVKRLAC 188
Q A++C C+ A W C+ S +YP L+ R+
Sbjct: 63 CSQCRVAKYCSAKCQKKA-----------WPDHKRECKCLKSCKPRYPPDSVRLLGRVVF 111
Query: 189 MIISGA--ESADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNKQWYT 246
+ GA ES S +L +EG L F+ ++ Q +
Sbjct: 112 KLXDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVXTFQHFXREEIQDASQLPPAFD 171
Query: 247 --NVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAHI 304
A++ N+F I VG +Y S NH CDPN I
Sbjct: 172 LFEAFAKVICNSFTI----------------CNAEXQEVGVGLYPSISLLNHSCDPNCSI 215
Query: 305 MWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
++ + L A+RD+E GEEL ICY+D + R+ L + F+C+C RC + D
Sbjct: 216 VF-NGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLRDQYCFECDCFRCQTQD 271
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 43/303 (14%)
Query: 76 SPPPIQVALTESAGRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQ 135
S ++V +E GRG+ AT+ A+D+I + S +N VC+ C ++ +
Sbjct: 5 SMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHR 64
Query: 136 HFQHHNARFCGEVCKDNAKAFYDVERRADWSAFNDYCRSQGLKYPLLVKRLACMIISGAE 195
Q A +C C+ +A + + + +A Y K P RLA I+ E
Sbjct: 65 CGQCKFAHYCDRTCQKDAW----LNHKNECAAIKKYG-----KVPNENIRLAARIMWRVE 115
Query: 196 SADCIDILQPASLSPELILAMEEGFVMLRSAFKKAGIDD------EQMKFLNKQWYTNVL 249
+ + + +S + + E F + +D Q + + Q+ +++
Sbjct: 116 R-EGTGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIF 174
Query: 250 AQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAHIMWID- 308
I N F + GL VG I+ NHDC PN +++ +
Sbjct: 175 GVINCNGFTLSDQRGL---------------QAVGVGIFPNLGLVNHDCWPNCTVIFNNG 219
Query: 309 NADA-----------RLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRC 357
N +A L AL + EGEEL + YID + R+ L + + F C+C C
Sbjct: 220 NHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHC 279
Query: 358 SSG 360
G
Sbjct: 280 QKG 282
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 113/297 (38%), Gaps = 67/297 (22%)
Query: 89 GRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEV 148
GRG+ A R DL+ + T+ C C + S+ CG
Sbjct: 18 GRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSK---------CGR- 67
Query: 149 CKDNAKAFY-DVE-RRADWSAFNDYCRSQ---GLKY-PLLVKRLACMIISGAESADCIDI 202
CK +AFY DVE ++ DW C S G + P RL I++ +
Sbjct: 68 CK---QAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQK------- 117
Query: 203 LQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNK------QWYTNVL------- 249
+ P E +LA+ E S K +D+E+ + Q+Y+ L
Sbjct: 118 IHPERTPSEKLLAVRE----FESHLDK--LDNEKKDLIQSDIAALHQFYSKYLEFPDHSS 171
Query: 250 -----AQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAHI 304
AQ+ N F IE E+L +G+AI+ + NH C PN I
Sbjct: 172 LVVLFAQVNCNGFTIE-----DEEL-----------SHLGSAIFPDVALMNHSCCPNV-I 214
Query: 305 MWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
+ A + A++++ G+E+ YID + R L + F C C C++ D
Sbjct: 215 VTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKD 271
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 67/297 (22%)
Query: 89 GRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEV 148
GRG+ A + + DL+ + T++ + C +C + S+ CG
Sbjct: 18 GRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSK---------CGR- 67
Query: 149 CKDNAKAFY-DVE-RRADWSAFNDYCRSQ---GLKY-PLLVKRLACMIISGAESADCIDI 202
CK +AFY +VE ++ DW C G + P RL I++ +
Sbjct: 68 CK---QAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQK------- 117
Query: 203 LQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQ------------------MKFLNKQW 244
+ P E +LA++E S K +D+E+ ++F +
Sbjct: 118 IHPERTPSEKLLAVKE----FESHLDK--LDNEKKDLIQSDIAALHHFYSKHLEFPDNDS 171
Query: 245 YTNVLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAHI 304
+ AQ+ N F IE E+L +G+AI+ + NH C PN I
Sbjct: 172 LVVLFAQVNCNGFTIE-----DEEL-----------SHLGSAIFPDVALMNHSCCPNV-I 214
Query: 305 MWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
+ A + A+++++ GEE+ YID + R L + F C C C++ D
Sbjct: 215 VTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD 271
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 67/297 (22%)
Query: 89 GRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEV 148
GRG+ A + + DL+ + T++ + C +C + S+ CG
Sbjct: 18 GRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSK---------CGR- 67
Query: 149 CKDNAKAFY-DVE-RRADWSAFNDYCRSQ---GLKY-PLLVKRLACMIISGAESADCIDI 202
CK +AFY +VE ++ DW C G + P RL I++ +
Sbjct: 68 CK---QAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQK------- 117
Query: 203 LQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNK------QWYTN--------- 247
+ P E +LA++E S K +D+E+ + +Y+
Sbjct: 118 IHPERTPSEKLLAVKE----FESHLDK--LDNEKKDLIQSDIAALHHFYSKHLGFPDNDS 171
Query: 248 ---VLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAHI 304
+ AQ+ N F IE E+L +G+AI+ + NH C PN I
Sbjct: 172 LVVLFAQVNCNGFTIE-----DEEL-----------SHLGSAIFPDVALMNHSCCPNV-I 214
Query: 305 MWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
+ A + A+++++ GEE+ YID + R L + F C C C++ D
Sbjct: 215 VTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD 271
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 67/297 (22%)
Query: 89 GRGVFATRRIRASDLIHTAKPIITHPTLSTLNSVCYFCLRKITSSSQHFQHHNARFCGEV 148
GRG+ A + + DL+ + T++ + C +C + S+ CG
Sbjct: 18 GRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSK---------CGR- 67
Query: 149 CKDNAKAFY-DVE-RRADWSAFNDYCRSQ---GLKY-PLLVKRLACMIISGAESADCIDI 202
CK +AFY +VE ++ DW C G + P RL I++ +
Sbjct: 68 CK---QAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQK------- 117
Query: 203 LQPASLSPELILAMEEGFVMLRSAFKKAGIDDEQMKFLNK------QWYTN--------- 247
+ P E +LA++E S K +D+E+ + +Y+
Sbjct: 118 IHPERTPSEKLLAVKE----FESHLDK--LDNEKKDLIQSDIAALHHFYSKHLGFPDNDS 171
Query: 248 ---VLAQIRINAFRIELAGGLYEDLLXXXXXXXXXXXXVGNAIYMLPSFYNHDCDPNAHI 304
+ AQ+ N F IE E+L +G+AI+ + NH C PN I
Sbjct: 172 LVVLFAQVNCNGFTIE-----DEEL-----------SHLGSAIFPDVALMNHSCCPNV-I 214
Query: 305 MWIDNADARLMALRDVEEGEELRICYIDASMARDARQAILTQGFGFQCNCLRCSSGD 361
+ A + A+++++ GEE+ YID + R L + F C C C++ D
Sbjct: 215 VTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD 271
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 287 IYMLPS-FYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDA 333
+++ P+ F NHDC PN + A + ALRD+E GEE+ Y D
Sbjct: 201 LWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDG 248
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 292 SFYNHDCDPNAHIMWIDNADARLMALRDVEEGEELRICYIDA 333
+F NHDC PN + D A + LRD+E G+E+ Y +
Sbjct: 178 AFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEG 219
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 293 FYNHDCDPNAHI--MWIDNADAR-----LMALRDVEEGEELRICY 330
F NH CDPN + ++IDN D R L + R + GEEL Y
Sbjct: 218 FVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDY 262
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 293 FYNHDCDPNAHIMWI--DNADAR-----LMALRDVEEGEELRICYIDA 333
F NH CDPN I D+AD L A++D+ +G EL Y++
Sbjct: 223 FINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNG 270
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 293 FYNHDCDPNAHIM-WIDNADAR--LMALRDVEEGEEL 326
F NH CDPN + W N R L AL+D+ G EL
Sbjct: 149 FINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTEL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,023,241
Number of Sequences: 62578
Number of extensions: 378927
Number of successful extensions: 1000
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 27
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)