BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018073
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr-
Ring (Triad) Motif
Length = 60
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 294 WILANSKPCPRCKRPIEKNQGCMHMTC-TPPCKFEFCWLCLGQWSDHGERTGGFYACNRY 352
WI AN+K CP+C IEK+ GC HM C CK EFCW+CLG W HG +Y CNRY
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS---AWYNCNRY 57
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWT-GYISTAINDGPG-CLMLRCPDP 192
EE+TC IC E ++A C H FC +C T Y S DG G C + R P P
Sbjct: 18 EEVTCPICLELLKEP--VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 142 MTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPD 191
+ CGICFE Y + ++ C H +CS C ++S C+ + PD
Sbjct: 23 LRCGICFE-YFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 140 EEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCP 190
E + C IC E++ ++L CGH C C ++++IN +RCP
Sbjct: 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING------VRCP 60
>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The Human
Ubcm4-Interacting Protein 4
Length = 94
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 144 CGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSC 194
C +C YP +++ A C FC+ C Y+ I +G + CPD +C
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLET-AISCPDAAC 58
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 31.2 bits (69), Expect = 0.84, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTG 172
EE+TC IC E L+ CGH FC +C T
Sbjct: 18 EEVTCPICLELLTQP--LSLDCGHSFCQACLTA 48
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + DG GC RC
Sbjct: 341 CKICAENDKDVKI--EPCGHLMCTSCLTAWQES---DGQGCPFCRC 381
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201
C IC E+ PS+ +A C H FC C T + I P C + + P S + D
Sbjct: 8 CPICLED-PSNYSMALPCLHAFCYVCITRW----IRQNPTCPLCKVPVESVVHTIESD 60
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + DG GC RC
Sbjct: 29 CKICAENDKDVKI--EPCGHLMCTSCLTAWQES---DGQGCPFCRC 69
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 139 GEEMTCGICFENYP----SDRLLAAA-CGHPFCSSCWTGYISTAINDGPGC 184
G ++C IC + Y + RL+ + CGH FCS C + A N P C
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC 50
>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
Protein 31 Protein
Length = 86
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 207 SSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNC 265
SS +++ + + K WC C + F+ + TC +C +FC C
Sbjct: 2 SSGSSGALFHKKLTEGVLMRDPKFLWCAQ--CSFG--FIYEREQLEATCPQCHQTFCVRC 57
Query: 266 T---EEAHRPVDCDTVAKWVLKNSAES 289
EE HR C+ W NS S
Sbjct: 58 KRQWEEQHRGRSCEDFQNWKRMNSGPS 84
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 335 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 375
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 335 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 375
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 337 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 377
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 337 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 377
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 142 MTCGICFENYP----SDRLLAAA-CGHPFCSSCWTGYISTAINDGPGC 184
++C IC + Y + RL+ + CGH FCS C + A N P C
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC 57
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 30 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 70
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 27 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 67
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 174 ISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKV 213
+S A G GCLML+ GA +G+ +I L+ + K+
Sbjct: 46 VSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLIDGSDQKI 85
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWT 171
EE+TC IC E L+ CGH C +C T
Sbjct: 11 EEVTCPICLELLTEP--LSLDCGHSLCRACIT 40
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 37/147 (25%)
Query: 142 MTCGICFENYP----SDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGA 196
++C IC + Y + RL+ + CGH FCS C + A N P C
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC------------ 54
Query: 197 AVGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCR 256
K+ + RY + T CP C +V +G V+
Sbjct: 55 -------------RKKINHKRYH---PIYIGSGTVSCPI--CMDGYSEIVQNGRLIVSTE 96
Query: 257 CSYSFCWNCTEEAHRPVD-CDTVAKWV 282
C + FC C ++ + + C T K +
Sbjct: 97 CGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.7 bits (60), Expect = 9.6, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 142 MTCGICFENYP----SDRLLAAA-CGHPFCSSCWTGYISTAINDGPGC 184
++C IC + Y + RL+ + CGH FCS C + A N P C
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,428,102
Number of Sequences: 62578
Number of extensions: 468613
Number of successful extensions: 946
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 47
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)