Query 018073
Match_columns 361
No_of_seqs 366 out of 1650
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 09:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.9 3.3E-25 1.1E-29 155.2 2.1 57 294-354 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.7 3.8E-17 1.3E-21 126.2 5.2 87 139-226 3-92 (94)
3 2ct7_A Ring finger protein 31; 99.4 1.6E-15 5.5E-20 114.7 -4.0 78 209-290 4-85 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.2 5.5E-14 1.9E-18 104.6 -6.1 69 206-278 2-76 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.2 8.5E-13 2.9E-17 107.8 -1.0 117 139-312 5-126 (133)
6 3hcs_A TNF receptor-associated 98.8 8.9E-10 3E-14 94.0 1.7 82 138-244 15-96 (170)
7 2ct2_A Tripartite motif protei 98.7 2.1E-08 7.3E-13 75.4 5.5 60 139-206 13-74 (88)
8 2ecv_A Tripartite motif-contai 98.7 2.4E-08 8E-13 74.5 5.4 57 139-202 17-73 (85)
9 2ecy_A TNF receptor-associated 98.7 2.9E-08 9.9E-13 70.6 5.3 53 138-202 12-64 (66)
10 2ecw_A Tripartite motif-contai 98.6 3.8E-08 1.3E-12 73.4 5.9 57 139-202 17-73 (85)
11 1rmd_A RAG1; V(D)J recombinati 98.6 3.7E-08 1.3E-12 78.3 5.6 80 141-244 23-102 (116)
12 3hct_A TNF receptor-associated 98.6 4.4E-08 1.5E-12 78.2 5.9 83 138-245 15-97 (118)
13 2egp_A Tripartite motif-contai 98.6 1.2E-08 4.2E-13 75.2 2.2 59 139-203 10-68 (79)
14 2d8t_A Dactylidin, ring finger 98.6 3E-08 1E-12 71.7 3.6 55 138-205 12-66 (71)
15 2djb_A Polycomb group ring fin 98.6 6.5E-08 2.2E-12 70.0 4.9 53 139-204 13-66 (72)
16 1e4u_A Transcriptional repress 98.5 5E-08 1.7E-12 71.9 4.2 54 139-202 9-64 (78)
17 2ysl_A Tripartite motif-contai 98.5 4.2E-08 1.4E-12 71.1 3.6 54 138-201 17-70 (73)
18 1jm7_A BRCA1, breast cancer ty 98.5 1.3E-07 4.3E-12 74.6 6.4 69 141-219 21-90 (112)
19 2ysj_A Tripartite motif-contai 98.5 1.2E-07 4.1E-12 66.6 5.5 45 138-190 17-61 (63)
20 3knv_A TNF receptor-associated 98.5 1.5E-08 5.2E-13 83.5 0.2 85 138-244 28-118 (141)
21 1t1h_A Gspef-atpub14, armadill 98.5 9.2E-08 3.1E-12 70.3 4.3 51 139-201 6-56 (78)
22 2csy_A Zinc finger protein 183 98.5 1.8E-07 6.1E-12 69.3 5.8 48 139-199 13-60 (81)
23 3ztg_A E3 ubiquitin-protein li 98.5 7.8E-08 2.7E-12 73.1 3.9 50 138-198 10-60 (92)
24 3ng2_A RNF4, snurf, ring finge 98.5 4.1E-08 1.4E-12 70.7 2.2 55 139-204 8-67 (71)
25 2ecm_A Ring finger and CHY zin 98.5 9.8E-08 3.3E-12 65.1 4.0 49 140-199 4-54 (55)
26 2ecj_A Tripartite motif-contai 98.5 1.4E-07 4.8E-12 65.0 4.7 44 139-190 13-56 (58)
27 1g25_A CDK-activating kinase a 98.5 5E-08 1.7E-12 69.1 2.0 55 141-205 3-60 (65)
28 2xeu_A Ring finger protein 4; 98.5 5.7E-08 1.9E-12 68.4 2.2 54 141-205 3-61 (64)
29 2yur_A Retinoblastoma-binding 98.4 1.9E-07 6.7E-12 67.9 5.1 49 139-198 13-62 (74)
30 2ea6_A Ring finger protein 4; 98.4 1.3E-07 4.3E-12 67.6 4.0 51 138-199 12-67 (69)
31 2kiz_A E3 ubiquitin-protein li 98.4 2.9E-07 1E-11 65.9 5.8 51 139-200 12-63 (69)
32 3lrq_A E3 ubiquitin-protein li 98.4 2.2E-07 7.6E-12 71.8 5.4 53 141-205 22-75 (100)
33 2yu4_A E3 SUMO-protein ligase 98.4 2.5E-07 8.7E-12 70.7 5.3 58 139-201 5-64 (94)
34 3l11_A E3 ubiquitin-protein li 98.4 5.1E-08 1.8E-12 77.4 1.4 50 139-200 13-62 (115)
35 2ect_A Ring finger protein 126 98.4 1.7E-07 5.8E-12 68.8 3.4 54 139-203 13-67 (78)
36 2y43_A E3 ubiquitin-protein li 98.4 1.8E-07 6.2E-12 72.1 3.4 48 141-201 22-70 (99)
37 2ep4_A Ring finger protein 24; 98.3 5.6E-07 1.9E-11 65.3 5.5 50 139-199 13-63 (74)
38 4ayc_A E3 ubiquitin-protein li 98.3 2.2E-07 7.4E-12 76.3 3.0 46 141-199 53-98 (138)
39 3fl2_A E3 ubiquitin-protein li 98.3 3.9E-07 1.3E-11 73.3 4.3 48 141-200 52-99 (124)
40 2kr4_A Ubiquitin conjugation f 98.2 2.4E-06 8.2E-11 63.9 7.1 50 139-201 12-61 (85)
41 1iym_A EL5; ring-H2 finger, ub 98.2 4.7E-07 1.6E-11 61.6 2.8 49 140-199 4-54 (55)
42 1chc_A Equine herpes virus-1 r 98.2 7.4E-07 2.5E-11 63.5 3.7 47 141-199 5-51 (68)
43 2l0b_A E3 ubiquitin-protein li 98.2 9.5E-07 3.3E-11 67.0 3.9 51 139-200 38-89 (91)
44 1x4j_A Ring finger protein 38; 98.2 6.9E-07 2.4E-11 65.1 3.0 51 139-200 21-72 (75)
45 2ckl_A Polycomb group ring fin 98.2 7.8E-07 2.7E-11 69.7 3.4 48 140-200 14-62 (108)
46 2c2l_A CHIP, carboxy terminus 98.2 1.9E-06 6.5E-11 78.7 6.1 52 138-201 205-256 (281)
47 1z6u_A NP95-like ring finger p 98.2 1.1E-06 3.6E-11 73.2 3.9 49 141-201 78-126 (150)
48 1bor_A Transcription factor PM 98.2 4.6E-07 1.6E-11 62.2 1.4 44 140-199 5-48 (56)
49 2ecn_A Ring finger protein 141 98.1 2.2E-07 7.4E-12 66.8 -0.8 48 139-200 13-60 (70)
50 1v87_A Deltex protein 2; ring- 98.1 2.5E-06 8.5E-11 67.3 4.8 54 141-200 25-94 (114)
51 1jm7_B BARD1, BRCA1-associated 98.1 6.6E-07 2.3E-11 71.2 1.2 45 141-200 22-67 (117)
52 1wgm_A Ubiquitin conjugation f 98.0 6.5E-06 2.2E-10 63.2 5.5 50 139-201 20-70 (98)
53 2kre_A Ubiquitin conjugation f 98.0 1.8E-06 6.3E-11 66.6 2.3 50 139-201 27-76 (100)
54 2ckl_B Ubiquitin ligase protei 97.9 4.8E-06 1.6E-10 70.2 3.4 48 140-199 53-101 (165)
55 3htk_C E3 SUMO-protein ligase 97.9 3.3E-06 1.1E-10 75.6 2.4 54 140-202 180-234 (267)
56 2ecl_A Ring-box protein 2; RNF 97.9 7.5E-06 2.6E-10 60.5 3.4 51 140-201 14-77 (81)
57 2f42_A STIP1 homology and U-bo 97.9 1.5E-05 5.1E-10 67.9 5.3 51 139-201 104-154 (179)
58 4ic3_A E3 ubiquitin-protein li 97.8 5.4E-06 1.8E-10 60.2 1.8 43 141-200 24-67 (74)
59 2ct7_A Ring finger protein 31; 97.8 5.2E-06 1.8E-10 62.1 1.4 51 299-355 25-76 (86)
60 2ecg_A Baculoviral IAP repeat- 97.8 1.3E-05 4.5E-10 58.2 3.0 43 141-200 25-68 (75)
61 4ap4_A E3 ubiquitin ligase RNF 97.7 9.8E-06 3.4E-10 65.3 2.2 57 138-205 69-130 (133)
62 2vje_A E3 ubiquitin-protein li 97.7 1.9E-05 6.3E-10 55.6 2.6 48 139-199 6-56 (64)
63 2vje_B MDM4 protein; proto-onc 97.6 2E-05 6.8E-10 55.2 2.3 49 140-199 6-55 (63)
64 2d8s_A Cellular modulator of i 97.6 9E-05 3.1E-09 54.5 5.2 53 139-200 13-70 (80)
65 2ea5_A Cell growth regulator w 97.6 9.7E-05 3.3E-09 52.5 5.0 46 138-200 12-58 (68)
66 3dpl_R Ring-box protein 1; ubi 97.5 5.5E-05 1.9E-09 58.8 3.9 49 140-199 36-100 (106)
67 2y1n_A E3 ubiquitin-protein li 97.5 7.3E-05 2.5E-09 71.0 4.2 48 142-201 333-380 (389)
68 2yho_A E3 ubiquitin-protein li 97.4 3.8E-05 1.3E-09 56.4 1.3 42 142-200 19-61 (79)
69 2jmo_A Parkin; IBR, E3 ligase, 97.4 7E-05 2.4E-09 55.1 2.6 40 299-338 25-70 (80)
70 4a0k_B E3 ubiquitin-protein li 96.9 0.00013 4.4E-09 57.6 0.0 48 141-199 48-111 (117)
71 3t6p_A Baculoviral IAP repeat- 96.8 0.0003 1E-08 66.1 1.1 43 141-200 295-338 (345)
72 2ct0_A Non-SMC element 1 homol 96.5 0.0037 1.3E-07 45.0 4.9 50 140-199 14-63 (74)
73 3k1l_B Fancl; UBC, ring, RWD, 96.5 0.0054 1.9E-07 56.8 7.1 62 139-202 306-375 (381)
74 2bay_A PRE-mRNA splicing facto 96.1 0.0033 1.1E-07 43.4 3.0 50 141-203 3-53 (61)
75 1v92_A NSFL1 cofactor P47; 3-h 95.9 0.015 5.1E-07 37.5 5.2 40 79-118 5-44 (46)
76 2dal_A Protein KIAA0794; FAS a 95.4 0.031 1.1E-06 38.5 5.5 42 78-119 14-55 (62)
77 2cs3_A Protein C14ORF4, MY039 95.0 0.053 1.8E-06 38.8 5.8 52 136-191 10-63 (93)
78 1wd2_A Ariadne-1 protein homol 94.7 0.012 4E-07 40.5 1.8 38 229-270 5-45 (60)
79 3vk6_A E3 ubiquitin-protein li 94.6 0.022 7.7E-07 42.9 3.0 45 143-198 3-47 (101)
80 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.024 8.2E-07 43.0 2.5 33 141-173 3-36 (101)
81 2jrp_A Putative cytoplasmic pr 94.0 0.041 1.4E-06 39.9 3.3 59 300-361 3-66 (81)
82 2dam_A ETEA protein; KIAA0887, 94.0 0.12 4.2E-06 36.1 5.7 41 78-118 17-58 (67)
83 1vyx_A ORF K3, K3RING; zinc-bi 93.7 0.1 3.5E-06 35.6 4.8 49 140-199 5-58 (60)
84 2dzl_A Protein FAM100B; UBA-li 93.3 0.14 4.8E-06 35.7 5.0 38 81-118 19-56 (66)
85 3e21_A HFAF1, FAS-associated f 93.1 0.11 3.9E-06 33.2 4.0 38 79-116 5-43 (45)
86 2jne_A Hypothetical protein YF 93.1 0.049 1.7E-06 40.5 2.5 59 300-361 33-96 (101)
87 1wj7_A Hypothetical protein (R 93.0 0.17 5.9E-06 38.4 5.5 40 79-118 39-78 (104)
88 3lrq_A E3 ubiquitin-protein li 90.5 0.073 2.5E-06 40.3 1.0 35 300-340 23-57 (100)
89 1g25_A CDK-activating kinase a 90.4 0.094 3.2E-06 36.0 1.4 32 256-312 25-56 (65)
90 1z96_A DNA-damage, UBA-domain 90.4 0.55 1.9E-05 28.7 4.9 35 80-115 5-39 (40)
91 2di0_A Activating signal coint 89.8 0.89 3E-05 31.9 6.0 41 78-118 12-53 (71)
92 3vk6_A E3 ubiquitin-protein li 89.8 0.17 5.8E-06 38.1 2.4 49 232-314 3-52 (101)
93 2ysj_A Tripartite motif-contai 89.1 0.12 3.9E-06 35.3 1.0 33 300-339 21-53 (63)
94 2ysl_A Tripartite motif-contai 87.3 0.24 8.4E-06 34.6 1.8 32 300-338 21-52 (73)
95 1x4j_A Ring finger protein 38; 87.1 0.31 1.1E-05 34.4 2.3 37 252-314 38-75 (75)
96 2k4x_A 30S ribosomal protein S 87.1 0.23 7.7E-06 33.3 1.4 30 298-328 17-46 (55)
97 2djb_A Polycomb group ring fin 86.7 0.18 6.2E-06 35.4 0.8 34 300-339 16-49 (72)
98 2ecy_A TNF receptor-associated 86.5 0.21 7.1E-06 34.3 1.0 32 300-338 16-47 (66)
99 2ckl_B Ubiquitin ligase protei 86.3 0.22 7.4E-06 41.2 1.2 34 300-339 55-88 (165)
100 1pft_A TFIIB, PFTFIIBN; N-term 86.1 0.43 1.5E-05 31.0 2.4 29 299-328 5-34 (50)
101 3nw0_A Non-structural maintena 85.2 0.52 1.8E-05 41.6 3.2 51 141-201 180-230 (238)
102 2ecw_A Tripartite motif-contai 85.1 0.32 1.1E-05 34.9 1.5 45 300-351 20-64 (85)
103 2ct2_A Tripartite motif protei 84.8 0.25 8.6E-06 35.9 0.8 38 300-340 16-53 (88)
104 2ecm_A Ring finger and CHY zin 84.7 0.41 1.4E-05 31.3 1.8 38 300-340 6-43 (55)
105 3j20_Y 30S ribosomal protein S 84.4 0.28 9.4E-06 32.1 0.8 29 298-328 18-47 (50)
106 1bor_A Transcription factor PM 83.9 0.74 2.5E-05 30.5 2.8 27 256-311 23-49 (56)
107 1chc_A Equine herpes virus-1 r 83.7 0.31 1.1E-05 33.6 0.8 35 299-339 5-39 (68)
108 1ify_A HHR23A, UV excision rep 83.4 2.7 9.1E-05 27.1 5.3 38 79-117 8-45 (49)
109 1e4u_A Transcriptional repress 83.4 0.42 1.4E-05 34.4 1.5 35 300-337 12-46 (78)
110 2jr6_A UPF0434 protein NMA0874 83.2 0.75 2.6E-05 32.1 2.6 29 299-328 8-36 (68)
111 1vq8_Z 50S ribosomal protein L 82.9 0.46 1.6E-05 34.6 1.5 36 299-338 27-62 (83)
112 3fl2_A E3 ubiquitin-protein li 82.8 0.39 1.3E-05 37.6 1.2 33 300-339 53-85 (124)
113 1iym_A EL5; ring-H2 finger, ub 82.6 0.57 1.9E-05 30.6 1.8 37 300-339 6-42 (55)
114 2kiz_A E3 ubiquitin-protein li 82.6 0.41 1.4E-05 33.0 1.1 37 300-340 15-51 (69)
115 2ckl_A Polycomb group ring fin 82.5 0.36 1.2E-05 36.8 0.8 35 300-340 16-50 (108)
116 2yur_A Retinoblastoma-binding 82.4 0.45 1.5E-05 33.5 1.3 35 300-340 16-50 (74)
117 1t1h_A Gspef-atpub14, armadill 82.4 0.49 1.7E-05 33.5 1.5 34 300-340 9-42 (78)
118 2g3q_A Protein YBL047C; endocy 82.3 2.7 9.3E-05 26.1 4.9 37 80-117 5-41 (43)
119 2y43_A E3 ubiquitin-protein li 82.0 0.37 1.3E-05 36.0 0.7 34 300-339 23-56 (99)
120 3bq3_A Defective in cullin ned 81.6 1.6 5.4E-05 39.2 4.8 44 77-120 13-56 (270)
121 1jm7_A BRCA1, breast cancer ty 80.9 0.5 1.7E-05 36.0 1.2 34 300-340 22-55 (112)
122 3l11_A E3 ubiquitin-protein li 80.9 0.77 2.6E-05 35.3 2.3 34 300-340 16-49 (115)
123 2ecj_A Tripartite motif-contai 80.9 0.49 1.7E-05 31.2 1.0 32 300-338 16-47 (58)
124 2ecv_A Tripartite motif-contai 80.9 0.29 9.8E-06 35.2 -0.2 33 300-339 20-52 (85)
125 1vg5_A RSGI RUH-014, rhomboid 80.6 2.8 9.7E-05 29.6 4.9 37 81-118 31-67 (73)
126 2egp_A Tripartite motif-contai 79.9 0.58 2E-05 33.1 1.1 33 300-339 13-45 (79)
127 2d8t_A Dactylidin, ring finger 79.8 0.58 2E-05 32.6 1.1 34 300-340 16-49 (71)
128 3ng2_A RNF4, snurf, ring finge 79.6 0.42 1.4E-05 33.1 0.3 40 300-340 11-51 (71)
129 2ect_A Ring finger protein 126 78.8 0.99 3.4E-05 31.8 2.1 36 300-339 16-51 (78)
130 2ecn_A Ring finger protein 141 78.7 0.61 2.1E-05 32.2 0.9 31 300-338 16-46 (70)
131 4ayc_A E3 ubiquitin-protein li 78.6 2.1 7.1E-05 34.1 4.2 34 300-340 54-87 (138)
132 2ea6_A Ring finger protein 4; 77.8 0.58 2E-05 32.0 0.6 39 300-339 16-55 (69)
133 2xeu_A Ring finger protein 4; 77.1 0.59 2E-05 31.4 0.4 39 300-339 4-43 (64)
134 2dak_A Ubiquitin carboxyl-term 76.5 5 0.00017 27.3 5.1 38 81-119 11-48 (63)
135 3ztg_A E3 ubiquitin-protein li 76.4 0.53 1.8E-05 34.6 0.0 33 300-338 14-46 (92)
136 2csy_A Zinc finger protein 183 76.2 0.7 2.4E-05 33.0 0.6 33 300-339 16-48 (81)
137 2knz_A Ubiquilin-4; cytoplasm, 76.1 6.4 0.00022 25.7 5.4 40 78-118 10-50 (53)
138 4ic3_A E3 ubiquitin-protein li 75.7 0.8 2.7E-05 32.3 0.8 26 256-311 41-67 (74)
139 1jm7_B BARD1, BRCA1-associated 75.6 1.3 4.6E-05 34.1 2.2 34 299-338 22-55 (117)
140 1veg_A NEDD8 ultimate buster-1 75.3 6.1 0.00021 28.6 5.4 36 82-118 32-67 (83)
141 2jp7_A MRNA export factor MEX6 75.0 4.7 0.00016 27.0 4.5 41 77-117 4-44 (57)
142 3knv_A TNF receptor-associated 74.3 0.88 3E-05 36.6 0.8 33 300-339 32-64 (141)
143 1z6u_A NP95-like ring finger p 73.1 1.1 3.8E-05 36.4 1.2 34 300-340 79-112 (150)
144 2ep4_A Ring finger protein 24; 72.5 1.1 3.7E-05 31.3 0.9 37 300-340 16-52 (74)
145 2l0b_A E3 ubiquitin-protein li 72.0 0.71 2.4E-05 34.0 -0.2 36 300-339 41-76 (91)
146 1wji_A Tudor domain containing 71.2 7.3 0.00025 26.5 4.8 37 81-118 11-47 (63)
147 1v87_A Deltex protein 2; ring- 71.2 1.3 4.4E-05 33.9 1.1 38 256-314 60-97 (114)
148 1rmd_A RAG1; V(D)J recombinati 70.7 1.2 4.1E-05 34.2 0.9 33 300-339 24-56 (116)
149 1oai_A Nuclear RNA export fact 70.7 13 0.00045 24.9 6.0 39 78-116 6-44 (59)
150 2d8v_A Zinc finger FYVE domain 70.6 2.3 8E-05 29.2 2.1 34 139-175 6-40 (67)
151 2jy5_A Ubiquilin-1; UBA, alter 70.2 7.3 0.00025 25.4 4.5 38 80-118 13-51 (52)
152 2hf1_A Tetraacyldisaccharide-1 69.7 3.2 0.00011 28.9 2.7 29 299-328 8-36 (68)
153 3hct_A TNF receptor-associated 69.6 1.2 4.2E-05 34.4 0.6 34 300-340 19-52 (118)
154 2js4_A UPF0434 protein BB2007; 69.0 3.5 0.00012 28.9 2.8 29 299-328 8-36 (70)
155 1wfl_A Zinc finger protein 216 68.6 2.3 7.9E-05 30.0 1.8 27 300-332 26-52 (74)
156 1wfh_A Zinc finger (AN1-like) 68.1 2.8 9.7E-05 28.7 2.1 28 299-332 15-42 (64)
157 2pk7_A Uncharacterized protein 68.0 3.8 0.00013 28.6 2.9 29 299-328 8-36 (69)
158 1wr1_B Ubiquitin-like protein 67.9 11 0.00037 25.2 5.0 41 77-118 15-56 (58)
159 3h0g_I DNA-directed RNA polyme 67.6 3.9 0.00013 31.5 3.2 29 299-328 4-36 (113)
160 2jrp_A Putative cytoplasmic pr 64.9 2.6 8.8E-05 30.4 1.5 29 301-338 33-63 (81)
161 1wg2_A Zinc finger (AN1-like) 63.9 3.4 0.00011 28.3 1.8 28 299-332 15-42 (64)
162 2y1n_A E3 ubiquitin-protein li 63.5 6.4 0.00022 37.1 4.4 31 256-311 349-379 (389)
163 2bwb_A Ubiquitin-like protein 63.1 16 0.00056 23.0 5.0 40 77-117 5-45 (46)
164 2ecl_A Ring-box protein 2; RNF 62.7 2.3 7.8E-05 30.4 0.9 18 323-340 47-64 (81)
165 2jny_A Uncharacterized BCR; st 62.1 5.5 0.00019 27.6 2.7 29 299-328 10-38 (67)
166 3qt1_I DNA-directed RNA polyme 61.6 3.7 0.00013 32.6 2.0 30 298-328 23-56 (133)
167 1weo_A Cellulose synthase, cat 61.4 19 0.00066 26.2 5.5 50 139-198 14-68 (93)
168 1wiv_A UBP14, ubiquitin-specif 61.2 19 0.00065 25.2 5.5 35 83-118 33-67 (73)
169 2dkl_A Trinucleotide repeat co 61.2 17 0.00058 26.3 5.4 38 80-118 22-59 (85)
170 2dah_A Ubiquilin-3; UBA domain 60.9 7.6 0.00026 25.6 3.2 38 80-118 10-48 (54)
171 1weo_A Cellulose synthase, cat 60.8 8.3 0.00028 28.1 3.5 58 231-316 17-75 (93)
172 2c2l_A CHIP, carboxy terminus 59.5 6.1 0.00021 34.9 3.4 29 229-266 207-235 (281)
173 3hcs_A TNF receptor-associated 58.6 2.6 8.7E-05 34.7 0.6 33 300-339 19-51 (170)
174 1wfp_A Zinc finger (AN1-like) 58.2 3.5 0.00012 29.0 1.2 28 299-332 25-52 (74)
175 2dai_A Ubadc1, ubiquitin assoc 56.8 20 0.00068 25.8 5.1 37 81-118 31-67 (83)
176 1odh_A MGCM1; transcription fa 55.3 10 0.00035 30.8 3.5 35 270-325 96-130 (174)
177 1twf_I B12.6, DNA-directed RNA 54.6 5.5 0.00019 31.0 1.9 29 299-328 4-36 (122)
178 3k9o_A Ubiquitin-conjugating e 53.0 19 0.00066 30.4 5.3 37 80-117 164-200 (201)
179 2yu4_A E3 SUMO-protein ligase 52.3 4 0.00014 30.0 0.7 34 300-339 8-41 (94)
180 1z60_A TFIIH basal transcripti 52.3 4.1 0.00014 27.5 0.7 35 231-272 16-51 (59)
181 4a0k_B E3 ubiquitin-protein li 52.2 3 0.0001 32.4 0.0 25 313-339 75-99 (117)
182 3m7n_A Putative uncharacterize 52.0 7.5 0.00026 32.4 2.5 24 300-326 141-164 (179)
183 1wff_A Riken cDNA 2810002D23 p 51.6 13 0.00045 26.9 3.3 29 299-332 25-53 (85)
184 3t7l_A Zinc finger FYVE domain 51.4 11 0.00038 27.5 3.1 38 137-174 16-55 (90)
185 1vej_A Riken cDNA 4931431F19; 51.0 37 0.0013 23.8 5.5 38 80-118 30-68 (74)
186 3e46_A Ubiquitin-conjugating e 50.4 23 0.0008 31.2 5.5 37 80-117 216-252 (253)
187 2lli_A Protein AIR2; RNA surve 49.2 16 0.00055 28.2 3.9 20 257-276 20-40 (124)
188 1dl6_A Transcription factor II 49.1 12 0.00041 24.9 2.7 27 299-326 11-38 (58)
189 3dpl_R Ring-box protein 1; ubi 48.6 5.5 0.00019 30.2 1.0 25 313-339 64-88 (106)
190 3u5c_f 40S ribosomal protein S 47.7 12 0.00041 30.3 3.0 34 229-264 117-151 (152)
191 1joc_A EEA1, early endosomal a 47.3 17 0.00059 28.3 3.8 36 138-173 66-103 (125)
192 1z2q_A LM5-1; membrane protein 46.3 20 0.00068 25.7 3.7 38 136-173 16-55 (84)
193 1wii_A Hypothetical UPF0222 pr 46.2 10 0.00036 27.5 2.1 28 300-328 24-57 (85)
194 2cpw_A CBL-interacting protein 45.8 40 0.0014 22.8 5.0 36 82-118 22-58 (64)
195 2akl_A PHNA-like protein PA012 45.7 14 0.00046 29.0 2.8 32 295-328 23-54 (138)
196 2a20_A Regulating synaptic mem 45.7 14 0.00048 24.7 2.4 39 300-341 10-48 (62)
197 1twf_L ABC10-alpha, DNA-direct 45.3 8.7 0.0003 26.8 1.5 24 301-326 30-53 (70)
198 3u5c_f 40S ribosomal protein S 44.9 12 0.00041 30.3 2.6 31 299-330 118-150 (152)
199 3h0g_I DNA-directed RNA polyme 44.8 13 0.00045 28.4 2.7 31 229-261 3-36 (113)
200 1z67_A Hypothetical protein S4 44.8 25 0.00085 27.8 4.3 37 68-104 62-99 (135)
201 2kpi_A Uncharacterized protein 44.1 17 0.00059 24.0 2.8 28 299-328 10-38 (56)
202 2xzm_9 RPS31E; ribosome, trans 44.0 11 0.00037 31.8 2.2 30 299-330 113-143 (189)
203 3t6p_A Baculoviral IAP repeat- 43.5 9 0.00031 35.5 1.8 26 256-311 312-338 (345)
204 1ee8_A MUTM (FPG) protein; bet 43.4 11 0.00036 33.7 2.2 26 299-325 235-262 (266)
205 2xzf_A Formamidopyrimidine-DNA 43.4 9.3 0.00032 34.1 1.8 26 299-325 242-269 (271)
206 1dv0_A DNA repair protein HHR2 42.7 13 0.00044 23.6 1.9 37 81-118 6-42 (47)
207 1k82_A Formamidopyrimidine-DNA 41.8 10 0.00035 33.8 1.8 25 299-324 240-266 (268)
208 1twf_I B12.6, DNA-directed RNA 41.6 13 0.00045 28.8 2.2 31 229-261 3-36 (122)
209 2yw8_A RUN and FYVE domain-con 41.4 15 0.0005 26.3 2.3 35 138-172 16-52 (82)
210 3u6p_A Formamidopyrimidine-DNA 41.4 10 0.00035 33.9 1.7 25 299-324 245-271 (273)
211 1k3x_A Endonuclease VIII; hydr 41.1 11 0.00036 33.6 1.8 25 300-325 235-261 (262)
212 2dag_A Ubiquitin carboxyl-term 41.1 49 0.0017 23.1 5.0 37 81-118 11-48 (74)
213 1y02_A CARP2, FYVE-ring finger 41.1 11 0.00039 29.2 1.7 39 136-174 14-54 (120)
214 1ufz_A Hypothetical protein BA 40.8 81 0.0028 22.6 6.0 44 76-119 31-76 (83)
215 2ekk_A UBA domain from E3 ubiq 40.0 49 0.0017 20.6 4.4 35 81-117 11-45 (47)
216 1joc_A EEA1, early endosomal a 39.9 22 0.00074 27.7 3.3 42 292-336 61-103 (125)
217 1tr8_A Conserved protein (MTH1 39.3 48 0.0016 24.8 4.9 33 80-112 66-98 (102)
218 2l2d_A OTU domain-containing p 38.8 87 0.003 21.1 5.5 37 79-115 17-53 (73)
219 2o35_A Hypothetical protein DU 38.2 14 0.00047 27.5 1.7 17 164-180 42-58 (105)
220 1wfk_A Zinc finger, FYVE domai 37.8 21 0.00072 25.9 2.7 34 299-335 9-42 (88)
221 3fyb_A Protein of unknown func 37.8 14 0.00048 27.4 1.7 16 164-179 41-56 (104)
222 2ko5_A Ring finger protein Z; 37.3 11 0.00039 27.7 1.1 47 140-201 27-74 (99)
223 4gew_A 5'-tyrosyl-DNA phosphod 37.2 28 0.00095 32.2 4.1 38 81-118 47-84 (362)
224 3qt1_I DNA-directed RNA polyme 36.7 17 0.00058 28.7 2.2 32 228-261 22-56 (133)
225 2hu9_A MERP, mercuric transpor 36.7 18 0.00062 28.5 2.3 43 187-242 2-47 (130)
226 1vek_A UBP14, ubiquitin-specif 36.1 70 0.0024 22.9 5.3 36 82-118 32-68 (84)
227 2yre_A F-box only protein 30; 35.9 4.7 0.00016 30.2 -1.2 40 162-202 13-52 (100)
228 1whc_A RSGI RUH-027, UBA/UBX 3 35.4 43 0.0015 22.6 3.8 36 82-118 12-48 (64)
229 3vhs_A ATPase wrnip1; zinc fin 35.4 13 0.00045 20.2 0.9 21 185-207 5-25 (29)
230 1x4u_A Zinc finger, FYVE domai 35.2 21 0.00071 25.6 2.3 36 137-172 10-47 (84)
231 3nyb_B Protein AIR2; polya RNA 34.9 18 0.00063 26.0 1.9 49 259-335 5-55 (83)
232 3mjh_B Early endosome antigen 33.8 12 0.00042 22.1 0.7 15 139-153 3-17 (34)
233 2bl6_A Nucleocapsid protein P1 32.8 26 0.00088 20.7 2.1 16 261-276 2-17 (37)
234 2a51_A Nucleocapsid protein; s 32.5 15 0.0005 22.1 0.9 16 261-276 2-17 (39)
235 3h0g_L DNA-directed RNA polyme 32.0 23 0.00077 24.1 1.8 24 301-326 23-46 (63)
236 3htk_C E3 SUMO-protein ligase 31.9 19 0.00065 32.0 1.9 33 300-338 182-214 (267)
237 1dvp_A HRS, hepatocyte growth 31.8 27 0.00091 29.9 2.8 34 300-336 162-195 (220)
238 1wgl_A TOLL-interacting protei 31.8 81 0.0028 20.9 4.6 38 80-117 10-48 (59)
239 2zet_C Melanophilin; complex, 31.6 70 0.0024 25.8 5.1 35 298-334 67-101 (153)
240 2cp9_A EF-TS, EF-TSMT, elongat 31.2 93 0.0032 21.1 4.9 35 81-115 11-45 (64)
241 2zet_C Melanophilin; complex, 30.4 21 0.00072 28.9 1.8 31 140-170 67-100 (153)
242 2lbc_A Ubiquitin carboxyl-term 30.1 77 0.0026 24.3 5.0 36 82-118 81-116 (126)
243 2cp8_A NEXT to BRCA1 gene 1 pr 29.8 82 0.0028 20.6 4.2 27 91-117 20-47 (54)
244 1vfy_A Phosphatidylinositol-3- 29.8 26 0.00088 24.3 1.9 31 142-172 12-44 (73)
245 3lqh_A Histone-lysine N-methyl 29.7 13 0.00043 31.2 0.3 74 142-218 3-83 (183)
246 4esj_A Type-2 restriction enzy 29.5 40 0.0014 29.3 3.4 22 289-311 25-47 (257)
247 3v2d_5 50S ribosomal protein L 28.0 22 0.00075 23.9 1.2 22 298-325 29-50 (60)
248 2ec7_A GAG polyprotein (PR55GA 27.8 22 0.00074 22.6 1.2 17 260-276 7-23 (49)
249 2cwb_A Chimera of immunoglobul 27.1 81 0.0028 23.8 4.4 38 80-118 67-105 (108)
250 3iz6_X 40S ribosomal protein S 27.1 39 0.0013 24.4 2.4 37 231-270 37-74 (86)
251 1qxf_A GR2, 30S ribosomal prot 26.8 49 0.0017 22.6 2.8 31 231-264 8-39 (66)
252 2lbm_A Transcriptional regulat 26.5 1.4E+02 0.0047 23.7 5.9 49 140-197 62-117 (142)
253 1vk6_A NADH pyrophosphatase; 1 26.5 50 0.0017 29.2 3.7 30 297-327 105-134 (269)
254 2e72_A POGO transposable eleme 26.1 25 0.00085 22.4 1.1 31 298-337 11-41 (49)
255 2gvi_A Conserved hypothetical 25.8 22 0.00074 30.3 1.1 33 139-172 170-202 (204)
256 1k81_A EIF-2-beta, probable tr 25.2 40 0.0014 20.0 1.9 26 301-327 2-30 (36)
257 2d8x_A Protein pinch; LIM doma 25.1 36 0.0012 22.8 2.0 37 141-178 31-67 (70)
258 3zyq_A Hepatocyte growth facto 25.0 1.2E+02 0.0042 25.8 5.9 33 141-173 164-198 (226)
259 3zyq_A Hepatocyte growth facto 24.5 41 0.0014 28.9 2.7 35 300-337 165-199 (226)
260 1tc3_C Protein (TC3 transposas 24.4 66 0.0022 19.0 3.1 24 82-105 23-46 (51)
261 2zjr_Z 50S ribosomal protein L 24.4 32 0.0011 23.1 1.5 22 299-326 30-51 (60)
262 2lli_A Protein AIR2; RNA surve 24.3 58 0.002 24.9 3.3 17 260-276 43-59 (124)
263 1zbd_B Rabphilin-3A; G protein 24.3 36 0.0012 26.8 2.1 36 299-336 55-90 (134)
264 1wil_A KIAA1045 protein; ring 24.3 1.5E+02 0.0053 21.2 5.1 33 140-173 14-47 (89)
265 1lv3_A Hypothetical protein YA 24.2 18 0.00062 25.0 0.2 12 299-310 9-20 (68)
266 2f9y_B Acetyl-coenzyme A carbo 24.1 17 0.00059 33.0 0.2 28 300-328 25-53 (304)
267 1dsq_A Nucleic acid binding pr 24.1 47 0.0016 17.9 1.9 18 260-277 3-20 (26)
268 3a1b_A DNA (cytosine-5)-methyl 23.9 40 0.0014 27.4 2.3 35 139-176 77-114 (159)
269 3jyw_9 60S ribosomal protein L 23.3 49 0.0017 23.1 2.3 28 300-328 27-54 (72)
270 2xzm_6 RPS27E; ribosome, trans 22.7 62 0.0021 23.1 2.8 31 231-264 33-64 (81)
271 3j20_W 30S ribosomal protein S 22.7 65 0.0022 21.8 2.8 31 231-264 16-47 (63)
272 2k5c_A Uncharacterized protein 22.6 29 0.001 24.7 1.1 12 185-198 50-61 (95)
273 1wfe_A Riken cDNA 2310008M20 p 22.6 47 0.0016 24.0 2.2 32 229-267 24-56 (86)
274 2xvc_A ESCRT-III, SSO0910; cel 22.1 1.5E+02 0.0052 19.6 4.4 35 69-103 9-48 (59)
275 1x4v_A Hypothetical protein LO 21.8 51 0.0017 22.3 2.1 26 299-330 12-39 (63)
276 2cur_A Skeletal muscle LIM-pro 21.2 59 0.002 21.6 2.5 34 141-175 31-64 (69)
277 3w0f_A Endonuclease 8-like 3; 21.2 48 0.0016 29.8 2.5 13 300-312 252-264 (287)
278 1fre_A Nuclear factor XNF7; zi 21.1 53 0.0018 19.5 2.0 26 249-274 11-38 (42)
279 4esj_A Type-2 restriction enzy 20.9 84 0.0029 27.3 3.8 42 217-263 24-68 (257)
280 2csz_A Synaptotagmin-like prot 20.7 61 0.0021 22.8 2.4 33 138-170 22-57 (76)
281 2jt1_A PEFI protein; solution 20.6 1.9E+02 0.0066 20.1 5.2 29 73-101 7-45 (77)
282 1nui_A DNA primase/helicase; z 20.6 49 0.0017 28.7 2.4 24 300-327 15-42 (255)
283 2be7_D Aspartate carbamoyltran 20.5 63 0.0022 26.0 2.8 33 229-261 104-144 (153)
284 3j21_i 50S ribosomal protein L 20.4 55 0.0019 23.5 2.1 28 300-328 36-63 (83)
285 1loi_A Cyclic 3',5'-AMP specif 20.3 19 0.00065 19.0 -0.2 11 327-337 6-16 (26)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.90 E-value=3.3e-25 Score=155.23 Aligned_cols=57 Identities=58% Similarity=1.443 Sum_probs=54.0
Q ss_pred HHHhhcCCCCCCCcceeecCCCCceeecCC--CccceeccccccccccCCCCCCcccCCCccc
Q 018073 294 WILANSKPCPRCKRPIEKNQGCMHMTCTPP--CKFEFCWLCLGQWSDHGERTGGFYACNRYET 354 (361)
Q Consensus 294 ~i~~~~k~CP~C~~~IeK~~GCnhm~C~~~--C~~~FCw~C~~~~~~h~~~~g~~y~C~~~~~ 354 (361)
||++++|+||+|+++|||++|||||+|+ . |+++|||+|+++|+.|+. .+|.||||++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence 7888999999999999999999999998 7 999999999999999986 7999999975
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.67 E-value=3.8e-17 Score=126.17 Aligned_cols=87 Identities=21% Similarity=0.537 Sum_probs=75.9
Q ss_pred CCccccccccccccCCccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCc--cchhHHhhcCChHHHHHH
Q 018073 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA--VGQDMIYLLSSDEDKVKY 215 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~--i~~~~i~~ll~~~~~~~y 215 (361)
+..++|+||++.++...++.+ +|||.||++||+.|+..+|.+|. ..+++||.++|+.. ++...++.+++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 456889999999876666655 69999999999999999998875 35799998889999 999999999999999999
Q ss_pred HHHHHHHHHhh
Q 018073 216 NRYFIRSYVED 226 (361)
Q Consensus 216 ~~~~~~~~i~~ 226 (361)
.+++++.|+..
T Consensus 82 ~~~~~~~~v~~ 92 (94)
T 1wim_A 82 KKLQFERSGPS 92 (94)
T ss_dssp HHHHHHSSCSS
T ss_pred HHHHHHhhhcc
Confidence 99999887754
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.44 E-value=1.6e-15 Score=114.69 Aligned_cols=78 Identities=22% Similarity=0.603 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCCceEEe-ccCCccccccCCcC---CCCCCchhHHHHHHh
Q 018073 209 DEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEA---HRPVDCDTVAKWVLK 284 (361)
Q Consensus 209 ~~~~~~y~~~~~~~~i~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~---H~~~~C~~~~~~~~~ 284 (361)
++++++|++++++++|..++.++||| +|++++.... ....|+| .|++.||+.|+.+| |.|.+|.++++|+.+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 34567788888888998899999999 8999886653 3567999 79999999999999 999999999999999
Q ss_pred hhhhhH
Q 018073 285 NSAESE 290 (361)
Q Consensus 285 ~~~~~~ 290 (361)
+.++++
T Consensus 80 n~~~~~ 85 (86)
T 2ct7_A 80 NSGPSS 85 (86)
T ss_dssp HTCSSC
T ss_pred Cccccc
Confidence 877654
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.24 E-value=5.5e-14 Score=104.58 Aligned_cols=69 Identities=29% Similarity=0.623 Sum_probs=59.6
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCCceEEe------ccCCccccccCCcCCCCCCchhH
Q 018073 206 LSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC------RCSYSFCWNCTEEAHRPVDCDTV 278 (361)
Q Consensus 206 ll~~~~~~~y~~~~~~~~i~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C------~C~~~fC~~C~~~~H~~~~C~~~ 278 (361)
+|+++++++|++++++++|..+. ++|||+|+|++++.... ....|.| .|++.||+.|+.+||. .+|.++
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 46677888999999999998886 99999999999987653 4567999 6999999999999999 999753
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=8.5e-13 Score=107.79 Aligned_cols=117 Identities=26% Similarity=0.674 Sum_probs=79.8
Q ss_pred CCccccccccccccC-----CccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhhcCChHHHH
Q 018073 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKV 213 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~ 213 (361)
...++|+||++.+.. ..++.++|||.||..||..|+.. ...|| .|+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~l~i----- 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPIYI----- 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCT--TTCCBCTTTCEEECBC-----
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCC--CCCCcCcccccccccc-----
Confidence 346889999998742 12377899999999999999964 23799 8999987665544321
Q ss_pred HHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCCceEEeccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHH
Q 018073 214 KYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMN 293 (361)
Q Consensus 214 ~y~~~~~~~~i~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~ 293 (361)
+.....||. |...+..........+...||+.||..|... |+.
T Consensus 69 -------------~~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~---------- 111 (133)
T 4ap4_A 69 -------------GSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK---------- 111 (133)
T ss_dssp -------------SSSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH----------
T ss_pred -------------CCCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHH------------HHH----------
Confidence 234557885 7655432211222335559999999999633 321
Q ss_pred HHHhhcCCCCCCCcceeec
Q 018073 294 WILANSKPCPRCKRPIEKN 312 (361)
Q Consensus 294 ~i~~~~k~CP~C~~~IeK~ 312 (361)
..+.||.|+..|.++
T Consensus 112 ----~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ----NANTCPTCRKKINHK 126 (133)
T ss_dssp ----HCSBCTTTCCBCCGG
T ss_pred ----cCCCCCCCCCcCChh
Confidence 237999999999865
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=8.9e-10 Score=93.96 Aligned_cols=82 Identities=22% Similarity=0.516 Sum_probs=57.9
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhhcCChHHHHHHHH
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNR 217 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~y~~ 217 (361)
....+.|+||++.+ ..++.++|||.||..||..++..+ ..+|| .|+..+....+. ....
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~~---~~~~------ 73 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQLF---PDNF------ 73 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGCE---ECHH------
T ss_pred CCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC--------CCCCC--CCccCcchhhhh---hhHH------
Confidence 45578999999987 456778999999999999999763 23899 899888765322 2111
Q ss_pred HHHHHHHhhCCCccccCCCCCCcceee
Q 018073 218 YFIRSYVEDNRKTKWCPAPGCDYAVDF 244 (361)
Q Consensus 218 ~~~~~~i~~~~~~~~CP~p~C~~~i~~ 244 (361)
++..+. .-.+.||+.+|+..+.+
T Consensus 74 --~~~~i~--~l~v~C~n~GC~~~~~~ 96 (170)
T 3hcs_A 74 --AKREIL--SLMVKCPNEGCLHKMEL 96 (170)
T ss_dssp --HHHHHH--TSEEECCSTTCCCEEEG
T ss_pred --HHHHHh--hcccCCCCCCCCceecH
Confidence 111222 24579999999987654
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=2.1e-08 Score=75.44 Aligned_cols=60 Identities=27% Similarity=0.665 Sum_probs=46.6
Q ss_pred CCccccccccccccCCc--cccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhhc
Q 018073 139 GEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLL 206 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~l 206 (361)
...++|+||++.+.... ++.++|||.||..|+..|+.... ..++|| .|+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCT--TTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCC--CCCCcccchhHHHH
Confidence 45688999999886433 67789999999999999998641 157899 89998866555443
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=2.4e-08 Score=74.54 Aligned_cols=57 Identities=33% Similarity=0.708 Sum_probs=46.0
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhH
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~ 202 (361)
...++|+||++.+ .+++.++|||.||..|+..|+..+...+. .+.|| .|+..+....
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG---ESSCP--VCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS---CCCCT--TTCCSSCSSS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC---CCcCC--CCCCccCHHh
Confidence 4568999999987 45667899999999999999988765543 67999 8999886543
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.9e-08 Score=70.63 Aligned_cols=53 Identities=25% Similarity=0.618 Sum_probs=41.8
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhH
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~ 202 (361)
....++|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+....
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLSS----S----SPKCT--ACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHTT----S----SCCCT--TTCCCCCTTT
T ss_pred CCcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHHh----C----cCCCC--CCCcCCChhh
Confidence 34578999999987 45566899999999999999961 1 46799 8998876543
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.64 E-value=3.8e-08 Score=73.42 Aligned_cols=57 Identities=32% Similarity=0.600 Sum_probs=45.2
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhH
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~ 202 (361)
...++|+||++.+ ..++.++|||.||..|+..|+......+. ...|| .|+..+....
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~~ 73 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDG---KGNCP--VCRVPYPFGN 73 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTS---CBCCT--TTCCCCCTTC
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCC---CCCCC--CCCCcCCHHh
Confidence 4568999999987 45567899999999999999988653332 68899 8999886543
No 11
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.62 E-value=3.7e-08 Score=78.31 Aligned_cols=80 Identities=21% Similarity=0.418 Sum_probs=56.8
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhhcCChHHHHHHHHHHH
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFI 220 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~y~~~~~ 220 (361)
.++|+||++.+ .+++.++|||.||..|+..|+... ...|| .|+..+....+...+ ..+
T Consensus 23 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~~~~~-~~l--------- 80 (116)
T 1rmd_A 23 SISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM--------GSYCP--SCRYPCFPTDLESPV-KSF--------- 80 (116)
T ss_dssp HTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCBCCC-HHH---------
T ss_pred CCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC--------cCcCC--CCCCCCCHhhccccH-HHH---------
Confidence 57899999887 456678999999999999999762 24799 899998776544321 111
Q ss_pred HHHHhhCCCccccCCCCCCcceee
Q 018073 221 RSYVEDNRKTKWCPAPGCDYAVDF 244 (361)
Q Consensus 221 ~~~i~~~~~~~~CP~p~C~~~i~~ 244 (361)
...+. .-..+||+.||+..+..
T Consensus 81 ~~~i~--~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 81 LNILN--SLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp HHHHH--HCEEECCSTTCCCEEEH
T ss_pred HHHHH--HhcCCCCCCCCcchhhH
Confidence 11111 12468999999987654
No 12
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.61 E-value=4.4e-08 Score=78.21 Aligned_cols=83 Identities=22% Similarity=0.502 Sum_probs=58.8
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhhcCChHHHHHHHH
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNR 217 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~y~~ 217 (361)
....+.|+||++.+ ..++.++|||.||..|+..|+... ...|| .|+..+....+. ....
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~~---~~~~------ 73 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQLF---PDNF------ 73 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGCE---ECHH------
T ss_pred CCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC--------CCCCC--CCCCCcCHHhcc---cCHH------
Confidence 45578999999877 456778999999999999999763 23799 899988764332 2111
Q ss_pred HHHHHHHhhCCCccccCCCCCCcceeee
Q 018073 218 YFIRSYVEDNRKTKWCPAPGCDYAVDFV 245 (361)
Q Consensus 218 ~~~~~~i~~~~~~~~CP~p~C~~~i~~~ 245 (361)
++..+. .-.+.||+.+|...+.+.
T Consensus 74 --l~~~i~--~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 74 --AKREIL--SLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp --HHHHHH--TSEEECSSTTCCCEEEGG
T ss_pred --HHHHHc--cceeECCCCCCCCEEeeH
Confidence 112222 235799999999887654
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.60 E-value=1.2e-08 Score=75.17 Aligned_cols=59 Identities=32% Similarity=0.643 Sum_probs=45.6
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHH
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i 203 (361)
...++|+||++.+ .+++.++|||.||..|+..|+........ ....|| .|+..+....+
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~--~~~~CP--~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG--GKSSCP--VCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC--CCCCCS--SSCCCCCSSGG
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC--CCCcCC--CCCCcCCHhhC
Confidence 4568999999987 45667899999999999999877543322 367899 89998865443
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3e-08 Score=71.67 Aligned_cols=55 Identities=24% Similarity=0.503 Sum_probs=44.0
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhh
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ 205 (361)
.....+|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL---------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC---------SSBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC---------CCcCc--CcCchhCHhhccC
Confidence 44568999999886 45677899999999999998854 25799 8999988766543
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=6.5e-08 Score=70.05 Aligned_cols=53 Identities=28% Similarity=0.521 Sum_probs=41.5
Q ss_pred CCccccccccccccCCccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHh
Q 018073 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~ 204 (361)
...++|+||++.+. +++.+ +|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY---------SNRCP--KCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH---------CSSCT--TTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc---------CCcCC--CcCcccCccccc
Confidence 44689999998874 35554 89999999999999965 25799 899988665443
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.55 E-value=5e-08 Score=71.88 Aligned_cols=54 Identities=24% Similarity=0.613 Sum_probs=41.1
Q ss_pred CCccccccccccccCCcccccc--CCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhH
Q 018073 139 GEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~ 202 (361)
...++|+||++.+...++..++ |||.||..||..++.. + ..+|| .|+..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~----~~~CP--~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E----NGLCP--ACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S----CSBCT--TTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C----CCCCC--CCCCccCCCc
Confidence 4568999999988655454444 9999999999988753 1 46899 8999886543
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4.2e-08 Score=71.13 Aligned_cols=54 Identities=31% Similarity=0.727 Sum_probs=42.3
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
....+.|+||++.+ .+++.++|||.||..|+..|+... + ....|| .|+..+...
T Consensus 17 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C---GFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS---C---SCCCCS--SSCCCCCCC
T ss_pred CccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC---C---CCCCCC--CCCCcCCcc
Confidence 34568999999987 456777999999999999998631 1 257899 899887654
No 18
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.3e-07 Score=74.57 Aligned_cols=69 Identities=17% Similarity=0.384 Sum_probs=49.5
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhhc-CChHHHHHHHHHH
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLL-SSDEDKVKYNRYF 219 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~l-l~~~~~~~y~~~~ 219 (361)
.+.|+||++.+ ..++.++|||.||..|+..|+...- ..+.|| .|+..+....+... .-..+.+.+.+.+
T Consensus 21 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQKK------GPSQCP--LCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSSS------SSCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhCC------CCCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 46799999976 4566789999999999999998641 147899 89998876655432 2234555555544
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.2e-07 Score=66.65 Aligned_cols=45 Identities=33% Similarity=0.752 Sum_probs=35.6
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccC
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP 190 (361)
....++|+||++.+ .+++.++|||.||..|+..|+... + ...+||
T Consensus 17 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP 61 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C---GFFKCP 61 (63)
T ss_dssp CCCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHC---S---SCCCCS
T ss_pred CccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcC---C---CCCcCc
Confidence 34578999999987 456778999999999999999852 1 146788
No 20
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.50 E-value=1.5e-08 Score=83.54 Aligned_cols=85 Identities=26% Similarity=0.501 Sum_probs=56.3
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHh------hcCChHH
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY------LLSSDED 211 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~------~ll~~~~ 211 (361)
....++|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+...... .++....
T Consensus 28 l~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~~~l~~~~~~~d~~ 95 (141)
T 3knv_A 28 LEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS----G----PQNCA--ACVHEGIYEEGISILESSSAFPDNA 95 (141)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG----S----CEECH--HHHHTTCCCTTTTEECGGGCEECHH
T ss_pred CCcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc----C----CCCCC--CCCCcccccccccccchhhhcccHH
Confidence 34578999999876 45677899999999999999853 1 36899 888765332211 2222221
Q ss_pred HHHHHHHHHHHHHhhCCCccccCCCCCCcceee
Q 018073 212 KVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDF 244 (361)
Q Consensus 212 ~~~y~~~~~~~~i~~~~~~~~CP~p~C~~~i~~ 244 (361)
++..+. .-.++||+.+|...+..
T Consensus 96 --------~~~~i~--~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 96 --------ARREVE--SLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp --------HHHHHH--TSEEECCSTTCCCEEEH
T ss_pred --------HHHHHc--ccccccCCCCCCCEeEH
Confidence 122222 33579999999977654
No 21
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.49 E-value=9.2e-08 Score=70.31 Aligned_cols=51 Identities=18% Similarity=0.355 Sum_probs=41.5
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
...+.|+||++.+ .+++.++|||.||+.|+..|+.. + ...|| .|+..+...
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~----~~~CP--~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G----HKTCP--KSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T----CCBCT--TTCCBCSSC
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C----cCCCC--CCcCCCChh
Confidence 3468999999977 56777899999999999999963 2 35799 899988654
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=69.33 Aligned_cols=48 Identities=27% Similarity=0.622 Sum_probs=40.0
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
...+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA---------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH---------CSBCS--SSCCBCC
T ss_pred CCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC---------CCcCC--CcCcccc
Confidence 4468999999987 45667899999999999999964 34799 8999875
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.48 E-value=7.8e-08 Score=73.07 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=40.6
Q ss_pred CCCccccccccccccCCcccccc-CCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCcc
Q 018073 138 DGEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i 198 (361)
....++|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 10 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 60 (92)
T ss_dssp CCTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC---T----TCCCT--TTCCSS
T ss_pred CCcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc---C----CCcCc--CCCCcC
Confidence 34578999999987 4667788 99999999999999742 1 36899 899886
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.48 E-value=4.1e-08 Score=70.75 Aligned_cols=55 Identities=27% Similarity=0.790 Sum_probs=42.4
Q ss_pred CCccccccccccccC-----CccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHh
Q 018073 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~ 204 (361)
....+|+||++.+.. ..++.++|||.||..|+..|+..+ ..|| .|+..+....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCP--TCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---------SBCT--TTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---------CCCC--CCCCccChhhee
Confidence 456889999998742 223678999999999999999752 4799 899988765443
No 25
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.48 E-value=9.8e-08 Score=65.07 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=39.3
Q ss_pred CccccccccccccC--CccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPS--DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
...+|+||++.+.. ..+..++|+|.||..|+..|+... ..|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCC--CCCCcCC
Confidence 45789999998743 346778899999999999999873 4699 8987663
No 26
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.4e-07 Score=64.98 Aligned_cols=44 Identities=30% Similarity=0.767 Sum_probs=34.2
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccC
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP 190 (361)
...+.|+||++.+. +++.++|||.||..|+..|+... . ...+||
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~-~-----~~~~CP 56 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVIIECGHNFCKACITRWWEDL-E-----RDFPCP 56 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHTTSS-C-----CSCCCS
T ss_pred ccCCCCccCCcccC--ccEeCCCCCccCHHHHHHHHHhc-C-----CCCCCC
Confidence 44688999999873 55678999999999999998641 1 146788
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=5e-08 Score=69.14 Aligned_cols=55 Identities=27% Similarity=0.707 Sum_probs=41.0
Q ss_pred ccccccccc-cccCCc--cccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhh
Q 018073 141 EMTCGICFE-NYPSDR--LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (361)
Q Consensus 141 ~~~C~IC~e-~~~~~~--~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ 205 (361)
..+|+||++ .+.... ++.++|||.||..|+..++.. + ..+|| .|+..+....+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G----AGNCP--ECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T----SSSCT--TTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C----CCcCC--CCCCcccccccee
Confidence 468999999 553222 246789999999999999863 1 35899 8999887665543
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.45 E-value=5.7e-08 Score=68.36 Aligned_cols=54 Identities=26% Similarity=0.762 Sum_probs=41.7
Q ss_pred ccccccccccccC-----CccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhh
Q 018073 141 EMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (361)
Q Consensus 141 ~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ 205 (361)
..+|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHP 61 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCTTTCEEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCC--CCCccCCccceee
Confidence 5789999998742 12367789999999999999975 24799 8999887655443
No 29
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.45 E-value=1.9e-07 Score=67.91 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=39.8
Q ss_pred CCccccccccccccCCcccccc-CCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCcc
Q 018073 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i 198 (361)
...+.|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS---S----SSCCS--SSCCSS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc---C----CCcCC--CCCCcC
Confidence 4578999999987 4567788 99999999999999863 1 36899 899864
No 30
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-07 Score=67.61 Aligned_cols=51 Identities=27% Similarity=0.823 Sum_probs=39.5
Q ss_pred CCCccccccccccccCC-----ccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 138 DGEEMTCGICFENYPSD-----RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
......|+||++.+... .++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCT--TTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCC--CCCCccC
Confidence 34568899999987421 1267899999999999999975 24799 8988764
No 31
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.44 E-value=2.9e-07 Score=65.85 Aligned_cols=51 Identities=24% Similarity=0.584 Sum_probs=40.3
Q ss_pred CCccccccccccccC-CccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 139 GEEMTCGICFENYPS-DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCP--ICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCT--TTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCc--CcCccccC
Confidence 446789999998754 456678999999999999999762 2599 89887643
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.44 E-value=2.2e-07 Score=71.83 Aligned_cols=53 Identities=23% Similarity=0.534 Sum_probs=42.9
Q ss_pred ccccccccccccCCcccc-ccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhh
Q 018073 141 EMTCGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ 205 (361)
.++|+||++.+ ..++. ++|||.||..|+..|+... ...|| .|+..+....+..
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 22 VFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ--------RAQCP--HCRAPLQLRELVN 75 (100)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCEE
T ss_pred CCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC--------cCCCC--CCCCcCCHHHhHh
Confidence 57899999987 45666 8999999999999999863 25799 8999987665443
No 33
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2.5e-07 Score=70.65 Aligned_cols=58 Identities=19% Similarity=0.427 Sum_probs=44.6
Q ss_pred CCccccccccccccCCcccccc-CCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCc-cchh
Q 018073 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA-VGQD 201 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~-i~~~ 201 (361)
...+.|+||++.+ .+++.++ |||.||+.|+..|+...-..+ ....||..+|... +...
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~---~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRK---KKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTT---CCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcC---CCCCCCcCcCcccccCHh
Confidence 3468999999877 5778885 999999999999998643212 2578998889876 5543
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.41 E-value=5.1e-08 Score=77.39 Aligned_cols=50 Identities=30% Similarity=0.738 Sum_probs=40.4
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
...++|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK----A----SLCCP--FCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT----T----TSBCT--TTCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH----C----cCCCC--CCCcccCc
Confidence 4468999999887 46777899999999999988753 1 36899 89998864
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.38 E-value=1.7e-07 Score=68.84 Aligned_cols=54 Identities=24% Similarity=0.626 Sum_probs=41.7
Q ss_pred CCccccccccccccCC-ccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHH
Q 018073 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i 203 (361)
....+|+||++.+... .+..++|+|.||..|+..|+... ..|| .|+..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---------DSCP--VCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---------CSCT--TTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---------CcCc--CcCCccCCccc
Confidence 4467899999988643 34567899999999999998542 3799 89988765433
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.37 E-value=1.8e-07 Score=72.08 Aligned_cols=48 Identities=33% Similarity=0.884 Sum_probs=39.0
Q ss_pred ccccccccccccCCccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
.++|+||++.+. +++.+ +|||.||..|+..|+.. ...|| .|+..+...
T Consensus 22 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY---------KTQCP--TCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT---------CCBCT--TTCCBCCGG
T ss_pred CCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC---------CCCCC--CCCCcCChh
Confidence 478999999874 45555 89999999999999974 24799 899988754
No 37
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=5.6e-07 Score=65.31 Aligned_cols=50 Identities=26% Similarity=0.667 Sum_probs=39.3
Q ss_pred CCccccccccccccC-CccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 139 GEEMTCGICFENYPS-DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
.....|+||++.+.. ..+..++|+|.||..|+..|+... ..|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCP--LCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCT--TTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCC--CcCcccc
Confidence 346789999999854 334556899999999999999752 2799 8998764
No 38
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.32 E-value=2.2e-07 Score=76.27 Aligned_cols=46 Identities=30% Similarity=0.824 Sum_probs=38.1
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
.++|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR---------KIECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT---------CSBCT--TTCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc---------CCcCC--CCCCcCC
Confidence 36799999987 46778899999999999999753 24699 8998874
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.31 E-value=3.9e-07 Score=73.27 Aligned_cols=48 Identities=25% Similarity=0.663 Sum_probs=40.0
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
.++|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 52 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA----Q----VFSCP--ACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCT
T ss_pred CCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH----C----cCCCC--CCCccCCC
Confidence 57899999987 46777899999999999999972 1 46899 89998865
No 40
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.25 E-value=2.4e-06 Score=63.88 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=41.6
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
...+.|+||++.+ .+++.++|||.||+.|+..|+.. ...|| .|+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN---------SPTDP--FNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc---------CCCCC--CCcCCCChH
Confidence 3479999999876 67888899999999999999974 13699 888887654
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.24 E-value=4.7e-07 Score=61.63 Aligned_cols=49 Identities=22% Similarity=0.639 Sum_probs=37.5
Q ss_pred CccccccccccccCC-cccccc-CCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPSD-RLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
...+|+||++.+... .+..++ |||.||..|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCc--CCCCEeE
Confidence 356799999988643 355666 9999999999999854 23699 8987653
No 42
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.23 E-value=7.4e-07 Score=63.49 Aligned_cols=47 Identities=34% Similarity=0.742 Sum_probs=37.7
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
..+|+||++.+. +..+.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQ---------NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHH---------SCSTT--TTCCCCC
T ss_pred CCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhC---------cCcCc--CCChhhH
Confidence 467999999874 33467899999999999999864 23799 8998775
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.19 E-value=9.5e-07 Score=66.95 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=39.8
Q ss_pred CCccccccccccccCC-ccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
.....|+||++.+... .+..++|||.||..|+..|+.. ...|| .|+..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCc--CcCccCCC
Confidence 3467899999988543 3566889999999999999854 23799 89987753
No 44
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.19 E-value=6.9e-07 Score=65.06 Aligned_cols=51 Identities=27% Similarity=0.686 Sum_probs=39.9
Q ss_pred CCccccccccccccCC-ccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
.....|+||++.+... .+..++|+|.||..|+..|+... ..|| .|+..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------RTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------SSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------CcCc--CcCCcCCC
Confidence 3467899999988643 34667899999999999999752 3699 89887653
No 45
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.19 E-value=7.8e-07 Score=69.66 Aligned_cols=48 Identities=27% Similarity=0.681 Sum_probs=38.7
Q ss_pred CccccccccccccCCccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
..++|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET---------SKYCP--ICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS---------CSBCT--TTCCBSCS
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh---------CCcCc--CCCccccc
Confidence 357899999987 345665 99999999999999975 25799 89988753
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=1.9e-06 Score=78.74 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
....+.|+||++.+ .+++.++|||+||+.|+..|+... + ..|| .|+..+...
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~-----~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G-----HFNP--VTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C-----SSCT--TTCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C-----CCCc--CCCCCCchh
Confidence 34578999999976 678889999999999999999752 1 2399 899988654
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.16 E-value=1.1e-06 Score=73.17 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=40.9
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
.+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA----Q----VFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCTT
T ss_pred CCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh----C----CCcCC--CCCccCCCC
Confidence 47899999977 46677899999999999999974 1 46899 899988765
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.16 E-value=4.6e-07 Score=62.15 Aligned_cols=44 Identities=25% Similarity=0.571 Sum_probs=35.6
Q ss_pred CccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
..++|+||++.+. +++.++|||.||..|+.. . .++|| .|+..+.
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~--------~----~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA--------S----GMQCP--ICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS--------S----SSSCS--SCCSSSS
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc--------C----CCCCC--cCCcEee
Confidence 4678999999874 567889999999999866 1 46899 8988764
No 49
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.2e-07 Score=66.75 Aligned_cols=48 Identities=27% Similarity=0.731 Sum_probs=37.9
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
.....|+||++.+.. +.++|||.||..|+..|+.. ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSDR---------HRNCP--ICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSCC---------CSSCH--HHHHCTTC
T ss_pred CCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHHC---------cCcCC--CcCCcccC
Confidence 346789999998753 77899999999999998762 35798 78776643
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.10 E-value=2.5e-06 Score=67.34 Aligned_cols=54 Identities=30% Similarity=0.570 Sum_probs=39.3
Q ss_pred ccccccccccccCCc----------------cccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 141 EMTCGICFENYPSDR----------------LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~----------------~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
..+|+||++.+.... ...++|+|.||..|+..|+...... ....|| .|+..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~----~~~~CP--~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD----GSLQCP--SCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS----SCCBCT--TTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC----CCCcCC--CCCCccCC
Confidence 458999999874321 1257899999999999999643322 246899 89987643
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=6.6e-07 Score=71.17 Aligned_cols=45 Identities=27% Similarity=0.627 Sum_probs=37.3
Q ss_pred ccccccccccccCCccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
.++|+||++.+ .+++.+ +|||.||..|+..|+. ..|| .|+..+..
T Consensus 22 ~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP--~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG-----------TGCP--VCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT-----------TBCS--SSCCBCSC
T ss_pred CCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc-----------CCCc--CCCCcCcc
Confidence 47799999987 466777 8999999999998875 4699 89988754
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.02 E-value=6.5e-06 Score=63.21 Aligned_cols=50 Identities=10% Similarity=-0.087 Sum_probs=41.6
Q ss_pred CCccccccccccccCCccccccCC-CcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 139 GEEMTCGICFENYPSDRLLAAACG-HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
...+.|+||++.+ .+++.++|| |.||+.|+..|+.. ...|| .|+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS---------DQTDP--FNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT---------SCBCT--TTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh---------CCCCC--CCCCCCChh
Confidence 4579999999876 678889999 99999999999974 13699 899888654
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.01 E-value=1.8e-06 Score=66.58 Aligned_cols=50 Identities=8% Similarity=-0.069 Sum_probs=41.4
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
...+.|+||++.+ .+++.++|||.||+.|+..|+.. ...|| .|+..+...
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN---------SPTDP--FNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS---------CSBCS--SSCCBCCTT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc---------CCCCC--CCCCCCChh
Confidence 3479999999876 67888899999999999999963 24699 898887653
No 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.92 E-value=4.8e-06 Score=70.25 Aligned_cols=48 Identities=27% Similarity=0.764 Sum_probs=38.4
Q ss_pred CccccccccccccCCccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
..+.|+||++.+. +++.+ +|||.||..|+..|+.. + ...|| .|+..+.
T Consensus 53 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G----NKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T----CCBCT--TTCCBCC
T ss_pred CCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C----cCCCC--CCCCcCC
Confidence 3579999999874 45554 99999999999999974 1 35799 8998874
No 55
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.91 E-value=3.3e-06 Score=75.59 Aligned_cols=54 Identities=26% Similarity=0.505 Sum_probs=43.0
Q ss_pred CccccccccccccCCcccc-ccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhH
Q 018073 140 EEMTCGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~ 202 (361)
..++||||++.+ .+++. ..|||.||+.|+..|+... + ...||..+|+..+....
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~---~----~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY---T----TRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC---S----CEECSGGGCSCEECGGG
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC---C----CCCCCcccccCcCchhh
Confidence 468999999987 45665 5899999999999999742 2 47899888999876543
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=7.5e-06 Score=60.51 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=36.7
Q ss_pred CccccccccccccC------------Cccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 140 EEMTCGICFENYPS------------DRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 140 ~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
...+|+||++.+.. ..++.+ +|+|.|+..|+..|+..+ -.|| .|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP--~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------NRCP--LCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------CBCT--TTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------CCCC--CcCCCcchh
Confidence 35568888887732 223444 599999999999998752 2799 899887543
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.85 E-value=1.5e-05 Score=67.86 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
...+.||||++.+ .+++.++|||.||+.|+..|+... + . .|| .|+..+...
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~----~-tcP--~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----H-FDP--VTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---C----S-BCT--TTCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---C----C-CCC--CCcCCCChh
Confidence 4579999999876 578888999999999999999762 2 2 599 899888654
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.82 E-value=5.4e-06 Score=60.18 Aligned_cols=43 Identities=28% Similarity=0.705 Sum_probs=34.8
Q ss_pred ccccccccccccCCccccccCCCc-ccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
...|+||++.+ .+++.++|||. ||..|+..+ .+|| .|+..+..
T Consensus 24 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV-------------DKCP--MCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC-------------SBCT--TTCCBCSE
T ss_pred CCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC-------------ccCC--CcCcCccC
Confidence 46799999875 56778899999 999998755 4799 89987753
No 59
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.80 E-value=5.2e-06 Score=62.15 Aligned_cols=51 Identities=24% Similarity=0.594 Sum_probs=40.9
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccccccc-cccCCCCCCcccCCCccch
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW-SDHGERTGGFYACNRYETA 355 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~-~~h~~~~g~~y~C~~~~~~ 355 (361)
.+-||.|...+....+-..++|. .|++.||+.|+.+| ..|.. ..|..|+.-
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~-~C~~~FC~~C~~~w~~~H~~-----~sC~~~~~w 76 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCP-QCHQTFCVRCKRQWEEQHRG-----RSCEDFQNW 76 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECT-TTCCEECSSSCSBCCTTTTT-----SCHHHHHHH
T ss_pred EeECcCCCchheecCCCCceEeC-CCCCccccccCCchhhcCCC-----CChHHHHHH
Confidence 35699999999888888889997 79999999999999 44543 457766543
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.3e-05 Score=58.20 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=34.2
Q ss_pred ccccccccccccCCccccccCCCc-ccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
..+|+||++.+ .+++.++|||. ||..|+.. ..+|| .|+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~-------------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA-------------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH-------------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC-------------CCCCc--cCCceecC
Confidence 35799999875 56778899999 99999942 25799 89988754
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.73 E-value=9.8e-06 Score=65.31 Aligned_cols=57 Identities=25% Similarity=0.732 Sum_probs=43.7
Q ss_pred CCCccccccccccccC-----CccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHHhh
Q 018073 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ 205 (361)
+.....|+||++.+.. ...+.++|||.||..|+..|+.. ...|| .|+..+..+.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHP 130 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCT--TTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCC--CCCCcCChhccee
Confidence 3457889999998742 12266789999999999999975 24799 8999987766543
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.67 E-value=1.9e-05 Score=55.59 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=36.5
Q ss_pred CCccccccccccccCCccccc--cCCCc-ccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 139 GEEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
.....|.||++.. .+.+.+ +|||. ||..|+..+... .-+|| .|+..+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR---------NKPCP--VCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT---------TCCCT--TTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc---------CCcCC--CcCcchh
Confidence 3456899999875 344444 99999 899999988753 23699 8998774
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.64 E-value=2e-05 Score=55.24 Aligned_cols=49 Identities=18% Similarity=0.439 Sum_probs=35.4
Q ss_pred CccccccccccccCCccccccCCCc-ccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
....|.||++......++.++|||. ||..|...+... .-+|| .|+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA---------GASCP--ICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT---------TCBCT--TTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh---------CCcCC--CcCchhh
Confidence 3568999998653212223499998 999999987753 13799 8998874
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=9e-05 Score=54.49 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=41.7
Q ss_pred CCccccccccccccCCccccccCC-----CcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 139 GEEMTCGICFENYPSDRLLAAACG-----HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
.....|.||++.+.......++|. |.|...|+..|+..+ + ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~----~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D----TRCCE--LCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C----CSBCS--SSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C----CCCCC--CCCCeeec
Confidence 345789999998865555567886 999999999999874 1 36899 89987754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=9.7e-05 Score=52.53 Aligned_cols=46 Identities=22% Similarity=0.616 Sum_probs=36.2
Q ss_pred CCCccccccccccccCCccccccCCCc-ccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 138 DGEEMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
......|.||++.. .+++.++|||. ||..|+.. ..+|| .|+..|..
T Consensus 12 ~~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~-------------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY-------------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH-------------CSSCT--TTCCCCCC
T ss_pred CCCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc-------------CCCCC--CCCcchhc
Confidence 34467899999865 56788999999 99999982 14799 89987754
No 66
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.54 E-value=5.5e-05 Score=58.80 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=37.4
Q ss_pred CccccccccccccCC----------------ccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
...+|.||++.+... .++.++|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCS--SSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCc--CCCCcce
Confidence 346799999887533 1345789999999999999875 24699 8988753
No 67
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.45 E-value=7.3e-05 Score=71.00 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=39.5
Q ss_pred cccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 142 MTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 142 ~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
..|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+...
T Consensus 333 ~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~----~----~~~CP--~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES----E----GQGCP--FCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH----T----CSBCT--TTCCBCCEE
T ss_pred CCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc----C----CCCCC--CCCCccCCc
Confidence 6899999876 56778899999999999999874 1 35799 899987654
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.40 E-value=3.8e-05 Score=56.38 Aligned_cols=42 Identities=33% Similarity=0.747 Sum_probs=34.1
Q ss_pred cccccccccccCCccccccCCCc-ccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 142 MTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 142 ~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
..|+||++.. .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 19 ~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEE--INSTFCPCGHTVCCESCAAQL-------------QSCP--VCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC-------------SBCT--TTCCBCCE
T ss_pred CEeEEeCccc--CcEEEECCCCHHHHHHHHHhc-------------CcCC--CCCchhhC
Confidence 5699999875 56778899999 999998643 2799 89998754
No 69
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.40 E-value=7e-05 Score=55.09 Aligned_cols=40 Identities=28% Similarity=0.699 Sum_probs=35.2
Q ss_pred cCCCCC--CCcceeecCCCCceeecC----CCccceeccccccccc
Q 018073 299 SKPCPR--CKRPIEKNQGCMHMTCTP----PCKFEFCWLCLGQWSD 338 (361)
Q Consensus 299 ~k~CP~--C~~~IeK~~GCnhm~C~~----~C~~~FCw~C~~~~~~ 338 (361)
.+-||. |+..|....+...++|.. .|++.||+.|+.+|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 578997 999999888999999941 4999999999999965
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.94 E-value=0.00013 Score=57.63 Aligned_cols=48 Identities=21% Similarity=0.406 Sum_probs=0.4
Q ss_pred ccccccccccccCC----------------ccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 141 EMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 141 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
.-+|.||++.+... .++.++|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 111 (117)
T ss_dssp C--------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCC--CCCCeee
Confidence 45899999987531 1223579999999999999976 23699 8887653
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.77 E-value=0.0003 Score=66.14 Aligned_cols=43 Identities=28% Similarity=0.780 Sum_probs=35.2
Q ss_pred ccccccccccccCCccccccCCCc-ccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccch
Q 018073 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~ 200 (361)
...|+||++.+ ..++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 295 ~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~-------------~~CP--~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL-------------RKCP--ICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC-------------SBCT--TTCCBCCE
T ss_pred CCCCCccCCcC--CceEEcCCCChhHhHHHHhcC-------------CcCC--CCCCCccC
Confidence 57899999876 56778899999 999998744 4799 89988753
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.47 E-value=0.0037 Score=44.96 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=37.6
Q ss_pred CccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
...+|.||++.+.... .-..|+|.|...|+.+||+++- .-.|| .|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNA-------EPRCP--HCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCS-------SCCCT--TTCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcC-------CCCCC--CCcCcCC
Confidence 3568999999886433 2237999999999999997631 24799 8987764
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.46 E-value=0.0054 Score=56.84 Aligned_cols=62 Identities=23% Similarity=0.506 Sum_probs=43.5
Q ss_pred CCccccccccccccC-Cccc-----cccCCCcccHhhHHHHHHhhhcCCC--CeeeeccCCCcCCCccchhH
Q 018073 139 GEEMTCGICFENYPS-DRLL-----AAACGHPFCSSCWTGYISTAINDGP--GCLMLRCPDPSCGAAVGQDM 202 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~Cl~~~i~~~i~~~~--~~~~i~CP~~~C~~~i~~~~ 202 (361)
....+|+||++.+.. ..+. ...|+|.|...|+..|+.+.-.... ....=.|| -|+..|+...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCccH
Confidence 346789999998754 2221 2469999999999999987654322 12334799 8999886543
No 74
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.14 E-value=0.0033 Score=43.39 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=38.1
Q ss_pred ccccccccccccCCccccc-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhHH
Q 018073 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMI 203 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~i 203 (361)
.+.|+|+++.+ .+++.+ ++||.|++.|+..|+... + +|| ..+..+....+
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~------~cP--~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G------NDP--ITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S------BCT--TTCCBCCGGGC
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C------CCc--CCcCCCChhhc
Confidence 46799999876 466777 899999999999999752 2 388 67777765544
No 75
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=95.91 E-value=0.015 Score=37.49 Aligned_cols=40 Identities=13% Similarity=0.334 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+++.|.+...+.+.++..|+.+|...+||++..+..||.+
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4567899999999999999999999999999999999875
No 76
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.40 E-value=0.031 Score=38.55 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhcH
Q 018073 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (361)
Q Consensus 78 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~~ 119 (361)
.+++.|.+.+.+.+.++..|+.+|...+||++..+..||..+
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456789999999999999999999999999999999999763
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.04 E-value=0.053 Score=38.79 Aligned_cols=52 Identities=23% Similarity=0.566 Sum_probs=38.6
Q ss_pred CCCCCccccccccccccCCcccccc--CCCcccHhhHHHHHHhhhcCCCCeeeeccCC
Q 018073 136 FPDGEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPD 191 (361)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~ 191 (361)
.++...+.|.+|.+.+...-++..+ =.|.||..|-+.+|+.+-..+ .+-||.
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~----EvyCPS 63 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG----EVYCPS 63 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS----CCCCTT
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC----cEECCC
Confidence 3456678999999988655454433 379999999999999976543 567775
No 78
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.74 E-value=0.012 Score=40.46 Aligned_cols=38 Identities=32% Similarity=0.830 Sum_probs=30.9
Q ss_pred CccccCCCCCCcceeeecCCCCceEEe-c--cCCccccccCCcCC
Q 018073 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-R--CSYSFCWNCTEEAH 270 (361)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~--C~~~fC~~C~~~~H 270 (361)
..+.|| .|+..|... .+...++| . |++.||+.|+.+|-
T Consensus 5 ~~k~CP--~C~~~Iek~--~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKD--GGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCT--TTCCCCSSC--CSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred cceECc--CCCCeeEeC--CCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 467899 599988764 46788999 5 99999999998763
No 79
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.56 E-value=0.022 Score=42.88 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=30.9
Q ss_pred ccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCcc
Q 018073 143 TCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (361)
Q Consensus 143 ~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i 198 (361)
.|++|--++. .....++|.|.||.+|...+..... -.|| .|+..|
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~~--------k~Cp--~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKGD--------KMCP--GCSDPV 47 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTTC--------CBCT--TTCCBC
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhccC--------CCCc--CcCCee
Confidence 4888864432 2345679999999999998876532 2466 677665
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.14 E-value=0.024 Score=43.03 Aligned_cols=33 Identities=18% Similarity=0.630 Sum_probs=24.6
Q ss_pred ccccccccccccCCcccc-ccCCCcccHhhHHHH
Q 018073 141 EMTCGICFENYPSDRLLA-AACGHPFCSSCWTGY 173 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~~ 173 (361)
.+.|+||.+.+....+.. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 578999997643222222 789999999999983
No 81
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=93.98 E-value=0.041 Score=39.85 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=40.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCcc-----ceeccccccccccCCCCCCcccCCCccchhcccCC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF-----EFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVV 361 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~-----~FCw~C~~~~~~h~~~~g~~y~C~~~~~~~~~~~~ 361 (361)
..||.|+.+|+.++| +..|. .|+. -||-.|+++......--..-|.||.=.+-+.+.+|
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~-~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~LiSkkrv 66 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCE-TCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGLISKKRV 66 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECT-TTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCCCCTTSS
T ss_pred CCCCCCCCccccCCC--ceECc-cccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCEeecceE
Confidence 579999999999888 66798 7863 48999998875432110135678876655554443
No 82
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.97 E-value=0.12 Score=36.12 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 78 RQEEDITRISTVLS-ISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 78 ~~~~~i~~v~~~l~-i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.+.+.|.+.+.+.+ ..+..|+.+|...+||++..+..||..
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35667999999999 789999999999999999999999976
No 83
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.70 E-value=0.1 Score=35.63 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=35.2
Q ss_pred CccccccccccccCCccccccC--CC---cccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccc
Q 018073 140 EEMTCGICFENYPSDRLLAAAC--GH---PFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~C--gH---~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~ 199 (361)
....|.||++... .. ..++| .| .|...|+..|+..+- ...|| .|+..+.
T Consensus 5 ~~~~CrIC~~~~~-~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~-------~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG-NE-RFRACGCTGELENVHRSCLSTWLTISR-------NTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS-CC-CCCSCCCSSGGGSCCHHHHHHHHHHHT-------CSBCT--TTCCBCC
T ss_pred CCCEeEEeecCCC-Cc-eecCcCCCCchhhhHHHHHHHHHHhCC-------CCccC--CCCCeee
Confidence 3567999998743 23 34665 45 899999999997642 35799 8887653
No 84
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.30 E-value=0.14 Score=35.70 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+.|.+...+.+.++..|+..|...+||++..+..||.+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 46888899999999999999999999999999999976
No 85
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=93.14 E-value=0.11 Score=33.18 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHcCCChHHHHHHhh
Q 018073 79 QEEDITRISTVLSISK-VAASILLRFYNWSVSKVHDEWF 116 (361)
Q Consensus 79 ~~~~i~~v~~~l~i~~-~~a~~LL~~~~w~~~~l~e~~~ 116 (361)
..+.|.+.+++.|++. ..|+..|-..+||.+.....||
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3567888999999985 9999999999999988877665
No 86
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=93.09 E-value=0.049 Score=40.53 Aligned_cols=59 Identities=20% Similarity=0.435 Sum_probs=43.0
Q ss_pred CCCCCCCcceeecCCCCceeecCCCcc-----ceeccccccccccCCCCCCcccCCCccchhcccCC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF-----EFCWLCLGQWSDHGERTGGFYACNRYETAKQEGVV 361 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~-----~FCw~C~~~~~~h~~~~g~~y~C~~~~~~~~~~~~ 361 (361)
..||.|+..++.++| +..|. .|.. -||--|+++......--..-|.|+.-..-+.+.+|
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~-~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgLiSKkRV 96 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCR-SCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKRV 96 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEET-TTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEEECTTTS
T ss_pred ccCccCCCcceecCC--EEECc-cccchhhccccCcchhhHHHHHHHhcCcchhhccCCceeecceE
Confidence 689999999999988 77898 7975 46999998876543211145778877665555544
No 87
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.02 E-value=0.17 Score=38.35 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+++.|..|+++.+++++.|+..|...+|++...++.++..
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3789999999999999999999999999999999988865
No 88
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=90.51 E-value=0.073 Score=40.29 Aligned_cols=35 Identities=20% Similarity=0.590 Sum_probs=29.1
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+. +.++|. .|||.||+.|+..|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCP-HCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccC-CCCChhhHHHHHHHHHHC
Confidence 57999998886 467778 699999999999986654
No 89
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.38 E-value=0.094 Score=36.03 Aligned_cols=32 Identities=25% Similarity=0.795 Sum_probs=22.9
Q ss_pred ccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceeec
Q 018073 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKN 312 (361)
Q Consensus 256 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~ 312 (361)
.||+.||..|... | +..+...||.|+.++.++
T Consensus 25 ~CgH~fC~~Ci~~------------~-------------~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 25 VCGHTLCESCVDL------------L-------------FVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCCEEHHHHHH------------H-------------HHTTSSSCTTTCCCCSSC
T ss_pred CCCCHhHHHHHHH------------H-------------HHcCCCcCCCCCCccccc
Confidence 7999999998622 2 122236899999998753
No 90
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=90.37 E-value=0.55 Score=28.74 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHh
Q 018073 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (361)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~ 115 (361)
.+.|.++.+. |.++..|+..|+..+||++...+-+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578888886 9999999999999999998877644
No 91
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.83 E-value=0.89 Score=31.94 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 78 RQEEDITRISTVL-SISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 78 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.+.+.|.+|.++| .+..+....+|.+|+-|++.++..++++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4567888898888 6799999999999999999999988876
No 92
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=89.79 E-value=0.17 Score=38.09 Aligned_cols=49 Identities=22% Similarity=0.687 Sum_probs=33.8
Q ss_pred ccCCCCCCcceeeecCCCCceEEe-ccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCccee
Q 018073 232 WCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIE 310 (361)
Q Consensus 232 ~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~Ie 310 (361)
+|+. |+..|..- ..- .|++.||..|.. .|.+...+.||.|+.+|.
T Consensus 3 fC~~--C~~Pi~iy-------gRmIPCkHvFCydCa~-------------------------~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDK--CGLPIKVY-------GRMIPCKHVFCYDCAI-------------------------LHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTT--TCSBCSEE-------EEEETTCCEEEHHHHH-------------------------HHHHTTCCBCTTTCCBCS
T ss_pred ecCc--cCCCeEEE-------eeeccccccHHHHHHH-------------------------HHHhccCCCCcCcCCeee
Confidence 5774 87665332 344 799999999852 222334589999999998
Q ss_pred ecCC
Q 018073 311 KNQG 314 (361)
Q Consensus 311 K~~G 314 (361)
+.+-
T Consensus 49 rVe~ 52 (101)
T 3vk6_A 49 RIEQ 52 (101)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 7654
No 93
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.11 E-value=0.12 Score=35.29 Aligned_cols=33 Identities=27% Similarity=0.677 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+. +.++- +|||.||+.|+..|...
T Consensus 21 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHH
T ss_pred CCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHc
Confidence 57999998776 24444 39999999999999764
No 94
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.34 E-value=0.24 Score=34.59 Aligned_cols=32 Identities=28% Similarity=0.701 Sum_probs=25.6
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
..||-|...+. +.++- +|||.||+.|+..|..
T Consensus 21 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHH
Confidence 57999998776 23444 4999999999999976
No 95
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.15 E-value=0.31 Score=34.37 Aligned_cols=37 Identities=27% Similarity=0.734 Sum_probs=25.9
Q ss_pred eEEe-ccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceeecCC
Q 018073 252 DVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 314 (361)
Q Consensus 252 ~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~G 314 (361)
.+.. .|++.||..|.. +|+ .. ...||.|+..|....|
T Consensus 38 ~~~~l~C~H~fh~~Ci~------------~w~-------------~~-~~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 38 LLRVLPCNHEFHAKCVD------------KWL-------------KA-NRTCPICRADSGPSSG 75 (75)
T ss_dssp EEEEETTTEEEETTHHH------------HHH-------------HH-CSSCTTTCCCCCCCCC
T ss_pred eEEEECCCCHhHHHHHH------------HHH-------------Hc-CCcCcCcCCcCCCCCC
Confidence 3444 799999988863 232 22 2589999999987766
No 96
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=87.07 E-value=0.23 Score=33.27 Aligned_cols=30 Identities=20% Similarity=0.542 Sum_probs=21.5
Q ss_pred hcCCCCCCCcceeecCCCCceeecCCCccce
Q 018073 298 NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 298 ~~k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
..+.||+|+..+.-...-+..+|. +|++.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCG-RCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECT-TTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECC-CCCCEE
Confidence 358999999855422334689998 798874
No 97
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.74 E-value=0.18 Score=35.36 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+.. .++-. +|+|.||+.|...|...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTIT-ECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GSCTTTSSCCSS-----CEECS-SSCCEECHHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEEC-CCCCHHHHHHHHHHHHc
Confidence 589999887763 45555 59999999999888654
No 98
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.51 E-value=0.21 Score=34.35 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=25.1
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
..||-|...+.. .++ . +|||.||+.|...|..
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQ-T-ECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCC-C-SSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeE-C-CCCCHHHHHHHHHHHH
Confidence 479999887752 233 4 5999999999999975
No 99
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=86.30 E-value=0.22 Score=41.24 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=27.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|...+.. .++.. +|||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTK-ECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCSS-----EEEET-TTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhhC-----cCEeC-CCCChhHHHHHHHHHHh
Confidence 379999988763 57775 59999999999998764
No 100
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=86.09 E-value=0.43 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=22.3
Q ss_pred cCCCCCCCc-ceeecCCCCceeecCCCccce
Q 018073 299 SKPCPRCKR-PIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~-~IeK~~GCnhm~C~~~C~~~F 328 (361)
...||.|+. .|.....=..+.|. .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~-~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA-KCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES-SSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc-ccCCcc
Confidence 468999998 88777666779998 576644
No 101
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=85.19 E-value=0.52 Score=41.62 Aligned_cols=51 Identities=22% Similarity=0.512 Sum_probs=37.4
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
...|.||.+.+..... -..|+|.|...|+..|+++. ...+|| .|+..++..
T Consensus 180 i~~C~iC~~iv~~g~~-C~~C~~~~H~~C~~~~~~~~-------~~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQS-CETCGIRMHLPCVAKYFQSN-------AEPRCP--HCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEE-CSSSCCEECHHHHHHHTTTC-------SSCBCT--TTCCBCCSC
T ss_pred CCcCcchhhHHhCCcc-cCccChHHHHHHHHHHHHhC-------CCCCCC--CCCCCCCCC
Confidence 5679999987754321 22399999999999999752 145899 899876543
No 102
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.08 E-value=0.32 Score=34.93 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=29.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccCCCCCCcccCCC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNR 351 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~~~~g~~y~C~~ 351 (361)
-.||-|...+.. .++- +|+|.||+.|+..|.......++...|+.
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSA--DCNHSFCRACITLNYESNRNTDGKGNCPV 64 (85)
T ss_dssp TSCTTTCSCCSS-----CEEC--TTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred CCCcCCChhhCc-----ceeC--CCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 579999888753 2443 49999999999998655321122344553
No 103
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.83 E-value=0.25 Score=35.86 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=26.7
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
..||-|...+..... ..+.- +|||.||+.|...|....
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLL--HCGHTICRQCLEKLLASS 53 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEEC--SSSCEEEHHHHHHHHHHC
T ss_pred CCCccCCccccccCC-CeEEC--CCCChhhHHHHHHHHHcC
Confidence 579999988764321 12333 499999999999997654
No 104
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=84.65 E-value=0.41 Score=31.28 Aligned_cols=38 Identities=21% Similarity=0.511 Sum_probs=27.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
..||-|...+...+ ..+.-. +|+|.||+.|+..|....
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~~ 43 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVL-PCGHLLHRTCYEEMLKEG 43 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEEC-TTSCEEETTHHHHHHHHT
T ss_pred CcCcccChhhcCCC--cCeEec-CCCCcccHHHHHHHHHcC
Confidence 57999988775221 235556 599999999999997554
No 105
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.39 E-value=0.28 Score=32.15 Aligned_cols=29 Identities=28% Similarity=0.691 Sum_probs=20.4
Q ss_pred hcCCCCCCCccee-ecCCCCceeecCCCccce
Q 018073 298 NSKPCPRCKRPIE-KNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 298 ~~k~CP~C~~~Ie-K~~GCnhm~C~~~C~~~F 328 (361)
..+.||+|+..+. .+.+ +...|. .||+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~-~R~~C~-kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHG-DRWACG-KCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECS-SEEECS-SSCCEE
T ss_pred ecccCCCCCCceEEecCC-CeEECC-CCCCEE
Confidence 3478999998543 3333 788998 798753
No 106
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.88 E-value=0.74 Score=30.49 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=21.5
Q ss_pred ccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceee
Q 018073 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (361)
Q Consensus 256 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 311 (361)
.||+.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 69999999997541 2689999998863
No 107
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=83.70 E-value=0.31 Score=33.56 Aligned_cols=35 Identities=26% Similarity=0.856 Sum_probs=25.1
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
...||-|...+.. ...-. +|||.||+.|...|...
T Consensus 5 ~~~C~IC~~~~~~-----~~~~~-~C~H~fc~~Ci~~~~~~ 39 (68)
T 1chc_A 5 AERCPICLEDPSN-----YSMAL-PCLHAFCYVCITRWIRQ 39 (68)
T ss_dssp CCCCSSCCSCCCS-----CEEET-TTTEEESTTHHHHHHHH
T ss_pred CCCCeeCCccccC-----CcEec-CCCCeeHHHHHHHHHhC
Confidence 3689999988752 23445 58888888888888643
No 108
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.43 E-value=2.7 Score=27.12 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
..+.|.++.+. |.++..|+..|+..+||+++..+-+++
T Consensus 8 ~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34556666554 899999999999999999998887665
No 109
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=83.41 E-value=0.42 Score=34.36 Aligned_cols=35 Identities=29% Similarity=0.851 Sum_probs=23.0
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~ 337 (361)
..||-|.-++.. ..-..+.|. |||.||..|+..+.
T Consensus 12 ~~CpICle~~~~-~d~~~~p~~--CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEI-DDINFFPCT--CGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCT-TTTTCCSST--TSCCCCHHHHHHHT
T ss_pred CcCCccCccCcc-ccccccccC--CCCCcCHHHHHHHH
Confidence 579999987742 112223354 88888888887754
No 110
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=83.19 E-value=0.75 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.4
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccce
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
.-.||.|+.+++-..+...++|. .|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSR-QAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEET-TTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 35899999999988888999998 677655
No 111
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=82.94 E-value=0.46 Score=34.61 Aligned_cols=36 Identities=25% Similarity=0.649 Sum_probs=29.4
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
.-.||.|+....+..+=..+.|. .|++.|- |+.|..
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~-~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCS-YCDYKFT---GGSYKP 62 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEET-TTCCEEE---CCSSSS
T ss_pred cCcCCCCCCcceeccCCCeEECC-CCCCEec---CCEecc
Confidence 35899999999999888899999 7999874 455554
No 112
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.76 E-value=0.39 Score=37.59 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|...+. +.++- +|||.||..|+..|-..
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 85 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFRA 85 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHHT
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHhH
Confidence 57999998776 33443 49999999999888653
No 113
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.60 E-value=0.57 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=27.4
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+..... .+.-. .|+|.||..|+..|...
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~-~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLP-RCGHGFHAECVDMWLGS 42 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECS-SSCCEECTTHHHHTTTT
T ss_pred CcCccCCccccCCCc--eEECC-CCCCcccHHHHHHHHHc
Confidence 579999888764432 33443 49999999999999754
No 114
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=82.57 E-value=0.41 Score=33.02 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=27.0
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
..||-|...+.... .+... +|+|.||+.|+..|....
T Consensus 15 ~~C~IC~~~~~~~~---~~~~~-~C~H~fc~~Ci~~~~~~~ 51 (69)
T 2kiz_A 15 EKCTICLSILEEGE---DVRRL-PCMHLFHQVCVDQWLITN 51 (69)
T ss_dssp CSBTTTTBCCCSSS---CEEEC-TTSCEEEHHHHHHHHHHC
T ss_pred CCCeeCCccccCCC---cEEEe-CCCCHHHHHHHHHHHHcC
Confidence 68999988775322 24444 599999999999997553
No 115
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=82.51 E-value=0.36 Score=36.80 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.6
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+. +.++.. +|||.||+.|...|...+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTII-ECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHh-----CcCEeC-CCCChhhHHHHHHHHHhC
Confidence 57999998875 356665 499999999999986543
No 116
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=82.43 E-value=0.45 Score=33.53 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+. +.++-. .|||.||+.|...|-...
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALLES 50 (74)
T ss_dssp GSCSSSCCCCT-----TCEECS-SSCCEECTTHHHHHHHHS
T ss_pred CCCcCCChHHh-----CCeEcC-CCCCHHHHHHHHHHHHhc
Confidence 57999988775 345532 399999999999997643
No 117
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=82.43 E-value=0.49 Score=33.50 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=26.3
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+. +.++- .|||.||..|...|-..+
T Consensus 9 ~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~~ 42 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDAG 42 (78)
T ss_dssp SSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTTT
T ss_pred CCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHHC
Confidence 47999998775 23554 399999999999987653
No 118
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=82.32 E-value=2.7 Score=26.12 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
++.|.++.+ +|.++..|...|+..+||++...+-++.
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 355777776 6999999999999999999988776554
No 119
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=82.01 E-value=0.37 Score=36.05 Aligned_cols=34 Identities=21% Similarity=0.548 Sum_probs=26.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|...+.. .++.. +|||.||..|...|...
T Consensus 23 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 56 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIP-QCSHNYCSLCIRKFLSY 56 (99)
T ss_dssp TBCTTTCSBCSS-----EEECT-TTCCEEEHHHHHHHHTT
T ss_pred CCcccCChhhCC-----cCEEC-CCCCHhhHHHHHHHHHC
Confidence 589999988763 45554 59999999999998764
No 120
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=81.60 E-value=1.6 Score=39.22 Aligned_cols=44 Identities=11% Similarity=0.326 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhcHH
Q 018073 77 QRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEE 120 (361)
Q Consensus 77 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~~~ 120 (361)
..+++.|.+.+.+.+.++..|+..|..++||.+..++.||.++.
T Consensus 13 ~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 13 SPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 34677899999999999999999999999999999999998764
No 121
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.94 E-value=0.5 Score=36.02 Aligned_cols=34 Identities=26% Similarity=0.677 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+.. .++ . +|||.||+.|...|....
T Consensus 22 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 22 LECPICLELIKE-----PVS-T-KCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp TSCSSSCCCCSS-----CCB-C-TTSCCCCSHHHHHHHHSS
T ss_pred CCCcccChhhcC-----eEE-C-CCCCHHHHHHHHHHHHhC
Confidence 589999987742 234 3 499999999999887654
No 122
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=80.89 E-value=0.77 Score=35.26 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=25.6
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+.. .++ . .|||.||..|...|...+
T Consensus 16 ~~C~iC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~~ 49 (115)
T 3l11_A 16 CQCGICMEILVE-----PVT-L-PCNHTLCKPCFQSTVEKA 49 (115)
T ss_dssp HBCTTTCSBCSS-----CEE-C-TTSCEECHHHHCCCCCTT
T ss_pred CCCccCCcccCc-----eeE-c-CCCCHHhHHHHHHHHhHC
Confidence 379999977752 233 3 499999999999998653
No 123
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.87 E-value=0.49 Score=31.21 Aligned_cols=32 Identities=22% Similarity=0.772 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
..||-|...+... ++ . +|+|.||+.|+..|..
T Consensus 16 ~~C~IC~~~~~~p-----~~-~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-----VI-I-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSSC-----CC-C-SSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCcc-----Ee-C-CCCCccCHHHHHHHHH
Confidence 5799999887632 33 3 4999999999999954
No 124
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.86 E-value=0.29 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.651 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+.. .++- +|+|.||..|+..|...
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSL--DCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCTTTCSCCSS-----CBCC--SSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeC--CCCCHHHHHHHHHHHHH
Confidence 589999988753 2333 49999999999888654
No 125
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=80.60 E-value=2.8 Score=29.59 Aligned_cols=37 Identities=8% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+.|.++.+ ++.+...|+..|+..+||+++..+-++..
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 45666665 58999999999999999999998877654
No 126
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=79.87 E-value=0.58 Score=33.11 Aligned_cols=33 Identities=18% Similarity=0.595 Sum_probs=25.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|...+.. .++- +|||.||..|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l--~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSL--DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCC--SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeEC--CCCCHHHHHHHHHHHHh
Confidence 469999877642 3443 49999999999998765
No 127
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.79 E-value=0.58 Score=32.55 Aligned_cols=34 Identities=32% Similarity=0.722 Sum_probs=25.4
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
..||-|...+.. .++- +|+|.||+.|...|...+
T Consensus 16 ~~C~IC~~~~~~-----~~~~--~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSL--PCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp CBCSSSSSBCSS-----EEEE--TTTEEEEHHHHHHCTTCS
T ss_pred CCCccCCcccCC-----CEEc--cCCCHHHHHHHHHHHHCC
Confidence 579999877742 2444 399999999999987543
No 128
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=79.62 E-value=0.42 Score=33.10 Aligned_cols=40 Identities=25% Similarity=0.482 Sum_probs=28.3
Q ss_pred CCCCCCCcceeec-CCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKN-QGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~-~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
..||-|...+... .+=..+.-. +|||.||+.|...|-...
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~ 51 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA 51 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC
T ss_pred CCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC
Confidence 5799999887643 222334455 599999999999996543
No 129
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.79 E-value=0.99 Score=31.85 Aligned_cols=36 Identities=25% Similarity=0.629 Sum_probs=24.0
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+.... .+.-. .|+|.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~~~~---~~~~~-~C~H~fc~~Ci~~~~~~ 51 (78)
T 2ect_A 16 LECPVCKEDYALGE---SVRQL-PCNHLFHDSCIVPWLEQ 51 (78)
T ss_dssp CCCTTTTSCCCTTS---CEEEC-TTSCEEETTTTHHHHTT
T ss_pred CCCeeCCccccCCC---CEEEe-CCCCeecHHHHHHHHHc
Confidence 68999987765322 12223 48888888888888643
No 130
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.75 E-value=0.61 Score=32.21 Aligned_cols=31 Identities=32% Similarity=0.896 Sum_probs=24.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
..||-|...+.. ++ . +|+|.||+.|...|..
T Consensus 16 ~~C~IC~~~~~~------~~-~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LI-L-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EE-E-TTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------cc-c-CCCCcccHHHHHHHHH
Confidence 589999887753 33 3 4999999999999875
No 131
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=78.56 E-value=2.1 Score=34.06 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|.-.+. +.++- +|||.||..|...|-...
T Consensus 54 ~~C~iC~~~~~-----~~~~~--~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTL--NCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp SBCTTTCSBCS-----SEEEE--TTSCEEEHHHHHHHTTTC
T ss_pred CCCcccCcccC-----CceEC--CCCCCccHHHHHHHHHcC
Confidence 46999998775 23454 399999999999987544
No 132
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.79 E-value=0.58 Score=32.01 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=27.3
Q ss_pred CCCCCCCcceeecCC-CCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQG-CMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~G-Cnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+..... =..+.-. +|+|.||..|...|...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 55 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 55 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc
Confidence 579999988764321 1222344 59999999999999654
No 133
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=77.10 E-value=0.59 Score=31.44 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=26.7
Q ss_pred CCCCCCCcceeecC-CCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQ-GCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~-GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+.... +=..+.-. +|||.||..|...|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc
Confidence 46888888776431 22233444 59999999999999754
No 134
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.45 E-value=5 Score=27.26 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhcH
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~~ 119 (361)
+.|.++.+ +|.++..|+..|+..+||++...+-++...
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34666666 699999999999999999999988777653
No 135
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=76.41 E-value=0.53 Score=34.55 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
-.||-|...+. +.++-. .|||.||..|+..|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECT-TTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECC-CCCCHHHHHHHHHHHH
Confidence 47999987765 334443 3999999999988864
No 136
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.15 E-value=0.7 Score=33.04 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=25.1
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+.. .++ . +|+|.||+.|...|...
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVV-T-KCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeE-c-cCCCHhHHHHHHHHHHC
Confidence 479999988753 344 4 49999999999888653
No 137
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=76.10 E-value=6.4 Score=25.73 Aligned_cols=40 Identities=8% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 78 RQEEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 78 ~~~~~i~~v~~~l~i-~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
...+.|.++.+ +|. +...++..|+..+||+++.++-++..
T Consensus 10 ~~~~~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 10 RFQQQLEQLNS-MGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 44666777765 488 88999999999999999998877654
No 138
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=75.74 E-value=0.8 Score=32.27 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=21.5
Q ss_pred ccCCc-cccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceee
Q 018073 256 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (361)
Q Consensus 256 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 311 (361)
.||+. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 89999 999996433 589999999874
No 139
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.65 E-value=1.3 Score=34.06 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=23.9
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
.-.||-|...+.. .++-. .|||.||+.|...|..
T Consensus 22 ~~~C~IC~~~~~~-----pv~~~-~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILRE-----PVCLG-GCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSS-----CBCCC-SSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhC-----ccEeC-CCCCHHHHHHHHHHhc
Confidence 3689999987752 34432 3888888888877754
No 140
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.26 E-value=6.1 Score=28.60 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.|.++.+ +|.++..|+..|+..+||+++..+-+|..
T Consensus 32 ~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 32 SINQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4555554 49999999999999999999999888764
No 141
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=75.04 E-value=4.7 Score=26.95 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 77 QRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 77 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
..+.+.|..++...++...-+...|...+||.++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999998887754
No 142
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=74.26 E-value=0.88 Score=36.62 Aligned_cols=33 Identities=18% Similarity=0.611 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|...+. +.++. .|||.||..|...|-..
T Consensus 32 ~~C~IC~~~~~-----~pv~~--~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA--QCGHRYCSFCLASILSS 64 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHGGG
T ss_pred cCCCCCChhhc-----CcEEC--CCCCccCHHHHHHHHhc
Confidence 47999998875 23564 49999999999998754
No 143
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=73.14 E-value=1.1 Score=36.41 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+. +.++ . +|||.||+.|+..|-.++
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~ 112 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQ 112 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhC
Confidence 57999998775 3344 4 499999999998887653
No 144
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.53 E-value=1.1 Score=31.27 Aligned_cols=37 Identities=27% Similarity=0.665 Sum_probs=26.1
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
..||-|...+..... .+.. +|+|.||+.|+..|....
T Consensus 16 ~~C~IC~~~~~~~~~--~~~~--~C~H~f~~~Ci~~~~~~~ 52 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE--LGIC--PCKHAFHRKCLIKWLEVR 52 (74)
T ss_dssp CBCSSSCCBCCSSSC--EEEE--TTTEEEEHHHHHHHHHHC
T ss_pred CCCcCCCcccCCCCc--EEEc--CCCCEecHHHHHHHHHcC
Confidence 579999888754322 1223 399999999999997543
No 145
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=71.99 E-value=0.71 Score=33.96 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
..||-|...+.... .+.-. +|+|.||+.|...|-..
T Consensus 41 ~~C~IC~~~~~~~~---~~~~l-~C~H~Fh~~Ci~~wl~~ 76 (91)
T 2l0b_A 41 MCCPICCSEYVKGD---VATEL-PCHHYFHKPCVSIWLQK 76 (91)
T ss_dssp SEETTTTEECCTTC---EEEEE-TTTEEEEHHHHHHHHTT
T ss_pred CCCcccChhhcCCC---cEEec-CCCChHHHHHHHHHHHc
Confidence 46999987765332 23334 49999999999999754
No 146
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.22 E-value=7.3 Score=26.53 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+.|+++.+ ++.+...|+..|+..+||++...+-++..
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 44666655 69999999999999999999988776654
No 147
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=71.18 E-value=1.3 Score=33.86 Aligned_cols=38 Identities=26% Similarity=0.533 Sum_probs=24.0
Q ss_pred ccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceeecCC
Q 018073 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 314 (361)
Q Consensus 256 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~G 314 (361)
.|++.||..|... |+..... .....||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCCCC
Confidence 7999999999633 3211000 113589999998875533
No 148
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=70.75 E-value=1.2 Score=34.17 Aligned_cols=33 Identities=24% Similarity=0.635 Sum_probs=25.7
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|...+.. .++ . +|||.||+.|...|...
T Consensus 24 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVE-T-SCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCSS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEE-c-CCCCcccHHHHHHHHhH
Confidence 579999988752 345 4 49999999999888765
No 149
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=70.67 E-value=13 Score=24.88 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhh
Q 018073 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWF 116 (361)
Q Consensus 78 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~ 116 (361)
.+.+.|..++...++...-+...|...+||.++.+..|.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677889999999999999999999999999999888774
No 150
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.60 E-value=2.3 Score=29.17 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=25.9
Q ss_pred CCccccccccccccCCccccccC-CCcccHhhHHHHHH
Q 018073 139 GEEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYIS 175 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~~i~ 175 (361)
....-|.||.++- .+.-+.| +-.||..||+..-.
T Consensus 6 ee~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDA---TLRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCC---eEEecCCCCceehHHHHHHHcc
Confidence 3456799999863 3555678 78999999998763
No 151
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=70.22 E-value=7.3 Score=25.36 Aligned_cols=38 Identities=8% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 80 EEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 80 ~~~i~~v~~~l~i-~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.+.|.++.+ +|. +...+...|+..+||+++.++-++..
T Consensus 13 ~~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 13 QQQLEQLSA-MGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 345666665 588 88889999999999999998877654
No 152
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=69.73 E-value=3.2 Score=28.91 Aligned_cols=29 Identities=24% Similarity=0.569 Sum_probs=22.3
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccce
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
.-.||.|+.+++-..+=..++|. .|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICK-GDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 35899999999877665678897 576655
No 153
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=69.57 E-value=1.2 Score=34.38 Aligned_cols=34 Identities=24% Similarity=0.644 Sum_probs=25.3
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 340 (361)
-.||-|...+.. .++. +|||.||+.|...|-..+
T Consensus 19 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~ 52 (118)
T 3hct_A 19 YECPICLMALRE-----AVQT--PCGHRFCKACIIKSIRDA 52 (118)
T ss_dssp GBCTTTCSBCSS-----EEEC--TTSCEEEHHHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEEC--CcCChhhHHHHHHHHhhC
Confidence 479999988752 3454 399999999998886543
No 154
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=68.96 E-value=3.5 Score=28.87 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=22.5
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccce
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
.-.||.|+.+++-..+=..++|. .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCN-ADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEET-TTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcC-CCCcee
Confidence 35899999999877665678897 576655
No 155
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=68.59 E-value=2.3 Score=30.00 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=22.4
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (361)
.+|..|+..+...+ +.|+ |+..||-.=
T Consensus 26 nRC~~CrKkvgL~g----f~Cr--Cg~~FCs~H 52 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCR--CGNLFCGLH 52 (74)
T ss_dssp TBCSSSCCBCGGGC----EECT--TSCEECSSS
T ss_pred CcChhhCCcccccC----eecC--CCCEechhc
Confidence 58999999988763 8997 999999654
No 156
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.13 E-value=2.8 Score=28.67 Aligned_cols=28 Identities=21% Similarity=0.675 Sum_probs=22.5
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (361)
+.+|..|+..+... -+.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMCR--CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT----CEECS--SSCEECTTT
T ss_pred CCcChhhCCccCcc----CEEee--cCCEecccc
Confidence 47899999987755 38897 999999754
No 157
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=68.04 E-value=3.8 Score=28.58 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=22.2
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccce
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
.-.||.|+.+++-..+=..++|. .|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISK-GAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEET-TTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 46899999999866655678897 676655
No 158
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=67.91 E-value=11 Score=25.25 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 77 QRQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 77 ~~~~~~i~~v~~~l~i~-~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.+.++.|.++.+. +.+ ...++..|+..+||+++.++.+++.
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3445667777664 775 6677899999999999999888764
No 159
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=67.64 E-value=3.9 Score=31.48 Aligned_cols=29 Identities=14% Similarity=0.522 Sum_probs=23.2
Q ss_pred cCCCCCCCcceeec----CCCCceeecCCCccce
Q 018073 299 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~----~GCnhm~C~~~C~~~F 328 (361)
.+-||.|+.++.-. .|.+.+.|+ .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~-~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACR-NCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECS-SSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECC-CCCCeE
Confidence 47899999887532 368899999 799977
No 160
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.94 E-value=2.6 Score=30.38 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=23.9
Q ss_pred CCCCCCcceeecCCCCceeecCCCc--cceeccccccccc
Q 018073 301 PCPRCKRPIEKNQGCMHMTCTPPCK--FEFCWLCLGQWSD 338 (361)
Q Consensus 301 ~CP~C~~~IeK~~GCnhm~C~~~C~--~~FCw~C~~~~~~ 338 (361)
.||.|+.++|+ |. .|| -.||-.|++..+.
T Consensus 33 fCPeCgq~Le~--------lk-ACGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LK-ACGAVDYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCCE--------EE-ETTEEEECCTTTTCCCCT
T ss_pred cCcchhhHHHH--------HH-hcCCcCeeeccCCCEeec
Confidence 79999999997 66 676 5799999877664
No 161
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=63.94 E-value=3.4 Score=28.33 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=22.0
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (361)
..+|..|+..+... -+.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCK--CGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECT--TSCEECSSS
T ss_pred CCcChhhCCccccc----CeEee--cCCEecccC
Confidence 46899999887654 37896 999999654
No 162
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=63.52 E-value=6.4 Score=37.15 Aligned_cols=31 Identities=26% Similarity=0.761 Sum_probs=22.6
Q ss_pred ccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceee
Q 018073 256 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (361)
Q Consensus 256 ~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 311 (361)
.||+.||..|... | +......||.|+.+|..
T Consensus 349 pCGH~FC~~Ci~~------------w-------------l~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 349 PCGHLMCTSCLTS------------W-------------QESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TTCCEECHHHHHH------------H-------------HHHTCSBCTTTCCBCCE
T ss_pred CCCChhhHHHHHH------------H-------------HhcCCCCCCCCCCccCC
Confidence 8999999988522 2 22234789999999874
No 163
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=63.06 E-value=16 Score=22.99 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCChHHHHHHhhh
Q 018073 77 QRQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 77 ~~~~~~i~~v~~~l~i~-~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
++.++.|.++.+. |.+ ...++..|+..+||+++.++.+++
T Consensus 5 ~~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3445667777654 875 556689999999999999887764
No 164
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.75 E-value=2.3 Score=30.42 Aligned_cols=18 Identities=22% Similarity=0.757 Sum_probs=15.1
Q ss_pred CCccceeccccccccccC
Q 018073 323 PCKFEFCWLCLGQWSDHG 340 (361)
Q Consensus 323 ~C~~~FCw~C~~~~~~h~ 340 (361)
.|+|.|+..|+..|-...
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC
T ss_pred CCCCccChHHHHHHHHhC
Confidence 499999999999997554
No 165
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=62.06 E-value=5.5 Score=27.57 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=22.1
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccce
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
.-.||.|+.+++-...=+...|. .|+..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~-~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNE-RLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcC-CCCccc
Confidence 46899999999877655678887 676655
No 166
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=61.59 E-value=3.7 Score=32.63 Aligned_cols=30 Identities=13% Similarity=0.494 Sum_probs=23.4
Q ss_pred hcCCCCCCCccee-ec---CCCCceeecCCCccce
Q 018073 298 NSKPCPRCKRPIE-KN---QGCMHMTCTPPCKFEF 328 (361)
Q Consensus 298 ~~k~CP~C~~~Ie-K~---~GCnhm~C~~~C~~~F 328 (361)
..+-||.|+.++- +. .|.+.+.|+ .|+|.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr-tCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCS-SSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECC-CCCCcE
Confidence 3589999998764 32 368899999 799876
No 167
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.39 E-value=19 Score=26.22 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=34.0
Q ss_pred CCccccccccccccCC---cccc-c-cCCCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCcc
Q 018073 139 GEEMTCGICFENYPSD---RLLA-A-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~---~~~~-l-~CgH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i 198 (361)
.....|.||-+.+... +++. . .|+-..|+.|+.--.. +| ...|| .|+...
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG----~q~Cp--qCktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EG----TQNCP--QCKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TS----CSSCT--TTCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----cc----Ccccc--ccCCcc
Confidence 3457899999986542 2333 2 3888999999865443 34 35688 788765
No 168
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=61.25 E-value=19 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 83 ITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 83 i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
|.++.+ +|.+...|+..|+..+||++...+-++..
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 444543 59999999999999999999988877654
No 169
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=61.18 E-value=17 Score=26.31 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.+.|.++.+ +++++..|+..|+..+||++...+-++..
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 556777766 59999999999999999999998877764
No 170
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.88 E-value=7.6 Score=25.55 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCHHH-HHHHHHHcCCChHHHHHHhhhc
Q 018073 80 EEDITRISTVLSISKVA-ASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 80 ~~~i~~v~~~l~i~~~~-a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.+.|.++.+. +.+... ++..|+..+||+++.++.++..
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3456666554 886655 5899999999999999988764
No 171
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.83 E-value=8.3 Score=28.15 Aligned_cols=58 Identities=22% Similarity=0.671 Sum_probs=37.9
Q ss_pred cccCCCCCCcceeeecCCCCceEEe-ccCCccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcce
Q 018073 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPI 309 (361)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~I 309 (361)
..|-. |+--|-.. ..+...|-| .|++..|..|. ++. ++..++-||+|+++.
T Consensus 17 qiCqi--CGD~VG~~-~~Ge~FVAC~eC~FPvCrpCy----------EYE---------------rkeG~q~CpqCktrY 68 (93)
T 1weo_A 17 QFCEI--CGDQIGLT-VEGDLFVACNECGFPACRPCY----------EYE---------------RREGTQNCPQCKTRY 68 (93)
T ss_dssp CBCSS--SCCBCCBC-SSSSBCCSCSSSCCCCCHHHH----------HHH---------------HHTSCSSCTTTCCCC
T ss_pred Ccccc--ccCccccC-CCCCEEEeeeccCChhhHHHH----------HHH---------------HhccCccccccCCcc
Confidence 34553 66555444 345677889 89998887664 221 122358999999999
Q ss_pred eecCCCC
Q 018073 310 EKNQGCM 316 (361)
Q Consensus 310 eK~~GCn 316 (361)
.+..|+.
T Consensus 69 kr~kgsp 75 (93)
T 1weo_A 69 KRLRGSP 75 (93)
T ss_dssp CCCTTCC
T ss_pred ccccCCC
Confidence 8766654
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=59.46 E-value=6.1 Score=34.86 Aligned_cols=29 Identities=0% Similarity=-0.246 Sum_probs=17.9
Q ss_pred CccccCCCCCCcceeeecCCCCceEEeccCCccccccC
Q 018073 229 KTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCT 266 (361)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 266 (361)
....||- |..++. ..|+-.||+.||..|-
T Consensus 207 ~~~~c~i--~~~~~~-------dPv~~~~gh~f~~~~i 235 (281)
T 2c2l_A 207 DYLCGKI--SFELMR-------EPCITPSGITYDRKDI 235 (281)
T ss_dssp STTBCTT--TCSBCS-------SEEECSSCCEEETTHH
T ss_pred cccCCcC--cCCHhc-------CCeECCCCCEECHHHH
Confidence 3456774 554432 1244479999998885
No 173
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=58.64 E-value=2.6 Score=34.72 Aligned_cols=33 Identities=21% Similarity=0.583 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|..++.. .+++. ||+.||..|...|...
T Consensus 19 ~~C~IC~~~~~~-----pv~~~--CgH~fC~~Ci~~~~~~ 51 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTP--CGHRFCKACIIKSIRD 51 (170)
T ss_dssp GBCTTTCSBCSS-----EEECT--TSCEEEHHHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECC--CCCHHHHHHHHHHHHh
Confidence 479999988763 36654 9999999999888643
No 174
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=58.19 E-value=3.5 Score=29.04 Aligned_cols=28 Identities=21% Similarity=0.664 Sum_probs=22.2
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (361)
..+|..|+..+... -+.|+ |+..||-.=
T Consensus 25 ~~RC~~C~kkvgL~----~f~Cr--Cg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKCR--CGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT----CEECT--TSCEECTTT
T ss_pred CccchhhcCccccc----ceEec--cCCEecccc
Confidence 46899999887765 38897 999999653
No 175
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.83 E-value=20 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+.|.++.+ +|.+...|+..|+..+||++...+-++..
T Consensus 31 ~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 31 AALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34556665 69999999999999999999988877654
No 176
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=55.31 E-value=10 Score=30.81 Aligned_cols=35 Identities=29% Similarity=0.695 Sum_probs=24.7
Q ss_pred CCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceeecCCCCceeecCCCc
Q 018073 270 HRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCK 325 (361)
Q Consensus 270 H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GCnhm~C~~~C~ 325 (361)
-.|..|..+++- ...|.||+|.-+++ ++.|+..||
T Consensus 96 lRPAicdkAR~K---------------Qq~k~CpnC~g~L~------~~~Crgh~G 130 (174)
T 1odh_A 96 LRPAICDKARQK---------------QQRKSCPNCNGPLK------LIPCRGHGG 130 (174)
T ss_dssp ECCCSSHHHHHH---------------HHHSBCSSSCCBEE------EECCCTBTT
T ss_pred echHHHHHHHHH---------------hhcCCCCCCCccee------eEeccCcCC
Confidence 368889876541 11299999999997 788874454
No 177
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=54.60 E-value=5.5 Score=31.05 Aligned_cols=29 Identities=14% Similarity=0.461 Sum_probs=22.3
Q ss_pred cCCCCCCCcceeec----CCCCceeecCCCccce
Q 018073 299 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~----~GCnhm~C~~~C~~~F 328 (361)
.+-||.|+.++.-. .+-+.+.|+ .|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~-~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECS-SSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECC-cCCCee
Confidence 36799999877622 668889998 798866
No 178
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=53.01 E-value=19 Score=30.40 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
++.|+++.+ .|+++..|+..|...+|+++...+.+++
T Consensus 164 eekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 455555543 5999999999999999999999988765
No 179
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.34 E-value=4 Score=30.05 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=26.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
-.||-|..++. +.++-. .|||.||-.|...|-..
T Consensus 8 ~~CPI~~~~~~-----dPV~~~-~cGh~f~r~cI~~~l~~ 41 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNK-VCGHTYEEDAIVRMIES 41 (94)
T ss_dssp CBCTTTCSBCS-----SEEEES-SSCCEEEHHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcC-CCCCeecHHHHHHHHHH
Confidence 36999998776 466664 49999999999988654
No 180
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.25 E-value=4.1 Score=27.48 Aligned_cols=35 Identities=26% Similarity=0.718 Sum_probs=24.0
Q ss_pred cccCCCCCCcceeeecCCCCceEEe-ccCCccccccCCcCCCC
Q 018073 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRP 272 (361)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~~ 272 (361)
+.|- +|...+. ......| .|+..||..|-.-.|..
T Consensus 16 ~~C~--~C~~~~~-----~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCY--GCQGELK-----DQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEET--TTTEECT-----TSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred Cccc--ccCcccC-----CCccEECCccCcCcccchhHHHHhh
Confidence 3575 4776542 1223679 99999999998777754
No 181
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=52.23 E-value=3 Score=32.37 Aligned_cols=25 Identities=20% Similarity=0.690 Sum_probs=0.0
Q ss_pred CCCCceeecCCCccceecccccccccc
Q 018073 313 QGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 313 ~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
+.|.-+.-. |+|.|+..|...|-..
T Consensus 75 ~~~~v~~~~--C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 75 EECTVAWGV--CNHAFHFHCISRWLKT 99 (117)
T ss_dssp ---------------------------
T ss_pred cccccccCC--cCceEcHHHHHHHHHc
Confidence 345445454 9999999999999654
No 182
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=52.00 E-value=7.5 Score=32.39 Aligned_cols=24 Identities=21% Similarity=0.593 Sum_probs=20.4
Q ss_pred CCCCCCCcceeecCCCCceeecCCCcc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKF 326 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~ 326 (361)
-.||+|+.+..+.+ ++|.|. .|+.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp-~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCP-ECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECS-SSCC
T ss_pred ecccccCCceEECC--CEEECC-CCCC
Confidence 47999999998876 999998 6764
No 183
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.62 E-value=13 Score=26.90 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=22.3
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 332 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C 332 (361)
..+|..|+..+-.. +-+.|+ |+..||-.=
T Consensus 25 ~~rC~~C~kkvgl~---~~f~Cr--Cg~~FC~~H 53 (85)
T 1wff_A 25 MKHCFLCGKKTGLA---TSFECR--CGNNFCASH 53 (85)
T ss_dssp CCBCSSSCCBCSSS---SCEECT--TCCEECTTT
T ss_pred CccchhhCCeeccc---CCeEcC--CCCEecccC
Confidence 46899999877543 348997 999999754
No 184
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.45 E-value=11 Score=27.51 Aligned_cols=38 Identities=32% Similarity=0.655 Sum_probs=25.9
Q ss_pred CCCCccccccccccccCC--ccccccCCCcccHhhHHHHH
Q 018073 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGYI 174 (361)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~~i 174 (361)
+......|.+|...|... ...--.||+.||..|....+
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 334456799999887532 12234699999999986543
No 185
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.96 E-value=37 Score=23.84 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 80 EEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 80 ~~~i~~v~~~l~i-~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
++.|.++.++ |. ....++..|+..+||+++.++.+|..
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4456666654 77 46777899999999999999887754
No 186
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=50.39 E-value=23 Score=31.18 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
.+.|+++.+ .|+....|+..|...+|+++..++.++.
T Consensus 216 ~~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 444555533 4999999999999999999999988775
No 187
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=49.16 E-value=16 Score=28.22 Aligned_cols=20 Identities=25% Similarity=0.658 Sum_probs=15.2
Q ss_pred cCCccccccCCc-CCCCCCch
Q 018073 257 CSYSFCWNCTEE-AHRPVDCD 276 (361)
Q Consensus 257 C~~~fC~~C~~~-~H~~~~C~ 276 (361)
|....|++|+.. -|....|.
T Consensus 20 Cp~~~C~~Cg~~~gH~~~~C~ 40 (124)
T 2lli_A 20 CPHIICSYCGATDDHYSRHCP 40 (124)
T ss_dssp TTSCCCTTTCCTTTCCTTTGG
T ss_pred CcCCcCcCCCCcCCccCcccC
Confidence 566788888876 78777775
No 188
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.11 E-value=12 Score=24.94 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=17.6
Q ss_pred cCCCCCCCc-ceeecCCCCceeecCCCcc
Q 018073 299 SKPCPRCKR-PIEKNQGCMHMTCTPPCKF 326 (361)
Q Consensus 299 ~k~CP~C~~-~IeK~~GCnhm~C~~~C~~ 326 (361)
...||.|+. .|.....=.-+.|. .||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~-~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICP-ECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECT-TTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeC-CCCC
Confidence 357999986 56555444557787 4553
No 189
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=48.64 E-value=5.5 Score=30.17 Aligned_cols=25 Identities=20% Similarity=0.666 Sum_probs=17.5
Q ss_pred CCCCceeecCCCccceecccccccccc
Q 018073 313 QGCMHMTCTPPCKFEFCWLCLGQWSDH 339 (361)
Q Consensus 313 ~GCnhm~C~~~C~~~FCw~C~~~~~~h 339 (361)
.+|.-+.- +|+|.|+..|...|-..
T Consensus 64 ~~~~~~~~--~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWG--VCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEE--TTSCEEEHHHHHHHHTT
T ss_pred ccceEeec--ccCcEECHHHHHHHHHc
Confidence 34444444 49999999999999654
No 190
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=47.75 E-value=12 Score=30.27 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=23.4
Q ss_pred CccccCCCCCCcceeeecCCCCceEEe-ccCCccccc
Q 018073 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (361)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (361)
..+.||++.|+..+..... ..+..| .|+..++++
T Consensus 117 ~~~~c~~~~cg~g~fma~h--~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANH--KDRLYCGKCHSVYKVN 151 (152)
T ss_dssp CSCBCCSTTSCSSSBEEEC--SSCEEESSSSSCCEEC
T ss_pred CcCcCCCccCCCceEeccc--CCCcccCCCceEEEec
Confidence 3578999999874433212 246789 899988764
No 191
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.32 E-value=17 Score=28.27 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=24.6
Q ss_pred CCCccccccccccccCCc--cccccCCCcccHhhHHHH
Q 018073 138 DGEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTGY 173 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~~ 173 (361)
......|.+|...|.... ..--.||+.||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 334567999998875321 122369999999998654
No 192
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.31 E-value=20 Score=25.71 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCCCCccccccccccccCCc--cccccCCCcccHhhHHHH
Q 018073 136 FPDGEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTGY 173 (361)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~~ 173 (361)
.+......|.+|...|..-. ..--.||+.||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34455678999998875421 122359999999997653
No 193
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=46.19 E-value=10 Score=27.48 Aligned_cols=28 Identities=29% Similarity=0.725 Sum_probs=20.9
Q ss_pred CCCCCCCcc------eeecCCCCceeecCCCccce
Q 018073 300 KPCPRCKRP------IEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 300 k~CP~C~~~------IeK~~GCnhm~C~~~C~~~F 328 (361)
=.||.|+.. |.|..|=-+++|+ .|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~-~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEES-SSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcc-cCCCeE
Confidence 479999876 3355777889998 687766
No 194
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.84 E-value=40 Score=22.81 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-ChHHHHHHhhhc
Q 018073 82 DITRISTVLSISKVAASILLRFYNW-SVSKVHDEWFAD 118 (361)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~w-~~~~l~e~~~~~ 118 (361)
.|.++.+ ++.++..|+..|+..+| |++...+-++..
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 4666665 69999999999999999 999888766653
No 195
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=45.69 E-value=14 Score=29.02 Aligned_cols=32 Identities=25% Similarity=0.825 Sum_probs=21.8
Q ss_pred HHhhcCCCCCCCcceeecCCCCceeecCCCccce
Q 018073 295 ILANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 295 i~~~~k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
+..+.-+||+|+....=..|= ...|. .|+++|
T Consensus 23 ~M~~lP~CP~C~seytYeDg~-l~vCP-eC~hEW 54 (138)
T 2akl_A 23 MVSTLPPCPQCNSEYTYEDGA-LLVCP-ECAHEW 54 (138)
T ss_dssp CCCCSCCCTTTCCCCCEECSS-SEEET-TTTEEE
T ss_pred ccccCCCCCCCCCcceEecCC-eEECC-cccccc
Confidence 334457999999877655554 37787 566654
No 196
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=45.66 E-value=14 Score=24.71 Aligned_cols=39 Identities=31% Similarity=0.703 Sum_probs=29.6
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccccCC
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGE 341 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~~ 341 (361)
..|+.|...=. ..|+-|. |. .|+..||-.||+.+.--.+
T Consensus 10 ~~C~iC~KTKF-ADG~Gh~-C~-yCk~r~CaRCGg~v~lr~~ 48 (62)
T 2a20_A 10 PTCGICHKTKF-ADGCGHN-CS-YCQTKFCARCGGRVSLRSN 48 (62)
T ss_dssp CCCSSSSCSCC-CSSCCEE-BT-TTCCEECTTSEEEEESSTT
T ss_pred chhhhhcccee-ccCCCcc-cc-ccCCeeecccCCEeeecCC
Confidence 46888875432 5889886 55 5999999999999886544
No 197
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=45.29 E-value=8.7 Score=26.79 Aligned_cols=24 Identities=17% Similarity=0.576 Sum_probs=14.9
Q ss_pred CCCCCCcceeecCCCCceeecCCCcc
Q 018073 301 PCPRCKRPIEKNQGCMHMTCTPPCKF 326 (361)
Q Consensus 301 ~CP~C~~~IeK~~GCnhm~C~~~C~~ 326 (361)
.|+.|+..++...+ ..+.|. .||+
T Consensus 30 ~C~~CG~~~e~~~~-d~irCp-~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLSRT-DAVRCK-DCGH 53 (70)
T ss_dssp ECSSSCCEECCCTT-STTCCS-SSCC
T ss_pred ECCCCCCcceeCCC-CCccCC-CCCc
Confidence 68888877665433 445666 4554
No 198
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=44.88 E-value=12 Score=30.28 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=22.9
Q ss_pred cCCCCC--CCcceeecCCCCceeecCCCccceec
Q 018073 299 SKPCPR--CKRPIEKNQGCMHMTCTPPCKFEFCW 330 (361)
Q Consensus 299 ~k~CP~--C~~~IeK~~GCnhm~C~~~C~~~FCw 330 (361)
-+.||+ |+.-+.-..-=+..+|. +|++-+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cg-kc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCG-KCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEES-SSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccC-CCceEEEe
Confidence 479999 99866533333578999 79998875
No 199
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.82 E-value=13 Score=28.38 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=21.7
Q ss_pred CccccCCCCCCcceeeecCC--CCceEEe-ccCCcc
Q 018073 229 KTKWCPAPGCDYAVDFVVGS--GNYDVTC-RCSYSF 261 (361)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~--~~~~v~C-~C~~~f 261 (361)
.+.+|| .|+..+.+.... +...+.| .|++.+
T Consensus 3 ~m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 367999 599988776432 3456788 788765
No 200
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=44.77 E-value=25 Score=27.84 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=32.1
Q ss_pred EeeCHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHc
Q 018073 68 TVLTEADIRQRQEED-ITRISTVLSISKVAASILLRFY 104 (361)
Q Consensus 68 ~~l~~~~i~~~~~~~-i~~v~~~l~i~~~~a~~LL~~~ 104 (361)
..+++++|.+.+-.+ |++++..+++++.++...|..+
T Consensus 62 ~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~ 99 (135)
T 1z67_A 62 QSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQ 99 (135)
T ss_dssp CCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 567999999999555 9999999999999999888655
No 201
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=44.11 E-value=17 Score=24.01 Aligned_cols=28 Identities=29% Similarity=0.896 Sum_probs=20.0
Q ss_pred cCCCCCCCcceeecCCCCceeec-CCCccce
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCT-PPCKFEF 328 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~-~~C~~~F 328 (361)
.-.||.|+.+++-.. ....|. +.|+..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 358999999988666 677886 1366544
No 202
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=44.02 E-value=11 Score=31.78 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=23.0
Q ss_pred cCCCCCCCcce-eecCCCCceeecCCCccceec
Q 018073 299 SKPCPRCKRPI-EKNQGCMHMTCTPPCKFEFCW 330 (361)
Q Consensus 299 ~k~CP~C~~~I-eK~~GCnhm~C~~~C~~~FCw 330 (361)
.+.||+|+..+ -....+.| +|. +|++-|.|
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CG-kC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCG-KCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EET-TTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccC-CceeEEEe
Confidence 47999999664 45666666 999 79988865
No 203
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=43.48 E-value=9 Score=35.53 Aligned_cols=26 Identities=27% Similarity=0.777 Sum_probs=21.6
Q ss_pred ccCCc-cccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceee
Q 018073 256 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 311 (361)
Q Consensus 256 ~C~~~-fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK 311 (361)
.||+. ||..|...+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 999997432 579999999975
No 204
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=43.45 E-value=11 Score=33.66 Aligned_cols=26 Identities=38% Similarity=1.004 Sum_probs=18.0
Q ss_pred cCCCCCCCcceeec--CCCCceeecCCCc
Q 018073 299 SKPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (361)
Q Consensus 299 ~k~CP~C~~~IeK~--~GCnhm~C~~~C~ 325 (361)
.++||.|+.+|+|. +|=+--.|. .|.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 262 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCP-TCQ 262 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECT-TTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 37999999999865 554444554 443
No 205
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=43.37 E-value=9.3 Score=34.13 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=18.4
Q ss_pred cCCCCCCCcceeec--CCCCceeecCCCc
Q 018073 299 SKPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (361)
Q Consensus 299 ~k~CP~C~~~IeK~--~GCnhm~C~~~C~ 325 (361)
.++||.|+.+|+|. +|=.--.|. .|.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 269 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCP-VCQ 269 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECT-TTS
T ss_pred CCCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 37999999999865 665555554 454
No 206
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=42.73 E-value=13 Score=23.59 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+.|+++. .+|.++..|...|...+||++...+-+|+.
T Consensus 6 eaI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 6 EAIERLK-ALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp HHHTTTT-TTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3455554 358999999999999999999887776653
No 207
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=41.82 E-value=10 Score=33.82 Aligned_cols=25 Identities=28% Similarity=0.743 Sum_probs=17.7
Q ss_pred cCCCCCCCcceeec--CCCCceeecCCC
Q 018073 299 SKPCPRCKRPIEKN--QGCMHMTCTPPC 324 (361)
Q Consensus 299 ~k~CP~C~~~IeK~--~GCnhm~C~~~C 324 (361)
.++||.|+.+|+|. +|=+--.|. .|
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP-~C 266 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCR-QC 266 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECT-TT
T ss_pred CCCCCCCCCEeeEEEECCCceEECC-CC
Confidence 37999999999865 554445554 45
No 208
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=41.60 E-value=13 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=22.2
Q ss_pred CccccCCCCCCcceeeecC--CCCceEEe-ccCCcc
Q 018073 229 KTKWCPAPGCDYAVDFVVG--SGNYDVTC-RCSYSF 261 (361)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~--~~~~~v~C-~C~~~f 261 (361)
.+.+|| .|+.++.+... .....+.| .|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 367999 49998876643 33466788 888765
No 209
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.43 E-value=15 Score=26.28 Aligned_cols=35 Identities=31% Similarity=0.790 Sum_probs=24.3
Q ss_pred CCCccccccccccccCCc--cccccCCCcccHhhHHH
Q 018073 138 DGEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTG 172 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~ 172 (361)
......|.+|...|.... ..--.||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 444567999998875321 12235999999999864
No 210
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=41.37 E-value=10 Score=33.93 Aligned_cols=25 Identities=44% Similarity=0.971 Sum_probs=17.7
Q ss_pred cCCCCCCCcceeec--CCCCceeecCCC
Q 018073 299 SKPCPRCKRPIEKN--QGCMHMTCTPPC 324 (361)
Q Consensus 299 ~k~CP~C~~~IeK~--~GCnhm~C~~~C 324 (361)
.++||.|+.+|+|. +|=.--.|. .|
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP-~C 271 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCP-RC 271 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECT-TT
T ss_pred cCCCCCCCCeEEEEEECCCCeEECC-CC
Confidence 37999999999964 664445554 45
No 211
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=41.15 E-value=11 Score=33.58 Aligned_cols=25 Identities=36% Similarity=0.781 Sum_probs=18.1
Q ss_pred CCCCCCCcceeec--CCCCceeecCCCc
Q 018073 300 KPCPRCKRPIEKN--QGCMHMTCTPPCK 325 (361)
Q Consensus 300 k~CP~C~~~IeK~--~GCnhm~C~~~C~ 325 (361)
++||.|+.+|+|. +|=.--.|. .|.
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCP-GCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECC-CCC
Confidence 6999999999865 665555565 453
No 212
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.12 E-value=49 Score=23.07 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CChHHHHHHhhhc
Q 018073 81 EDITRISTVLSISKVAASILLRFYN-WSVSKVHDEWFAD 118 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~-w~~~~l~e~~~~~ 118 (361)
+.|.++.+ +|.+...|+..|+..+ |+++...+-++..
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 34566665 6999999998888877 6899888777654
No 213
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=41.06 E-value=11 Score=29.19 Aligned_cols=39 Identities=23% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCCCCccccccccccccCC--ccccccCCCcccHhhHHHHH
Q 018073 136 FPDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGYI 174 (361)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~~i 174 (361)
.|......|..|-..|... ...--.||..||..|....+
T Consensus 14 ~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 14 SPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred cCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3455567899999887532 11234699999999977654
No 214
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=40.81 E-value=81 Score=22.58 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCChHHHHHHhhhcH
Q 018073 76 RQRQEEDITRISTVLS--ISKVAASILLRFYNWSVSKVHDEWFADE 119 (361)
Q Consensus 76 ~~~~~~~i~~v~~~l~--i~~~~a~~LL~~~~w~~~~l~e~~~~~~ 119 (361)
+.++..=+.++.+|+| ||.....-...++++|+++.++.++..+
T Consensus 31 ~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~ 76 (83)
T 1ufz_A 31 QARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQD 76 (83)
T ss_dssp HHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 4566677888889988 6888877788899999999999887653
No 215
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.00 E-value=49 Score=20.61 Aligned_cols=35 Identities=6% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
+.|.++.+ +|.+...|...|+..+ |++...+-++.
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 34566655 6899999999999887 88877765554
No 216
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.91 E-value=22 Score=27.68 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=29.7
Q ss_pred HHHHHhh-cCCCCCCCcceeecCCCCceeecCCCccceeccccccc
Q 018073 292 MNWILAN-SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW 336 (361)
Q Consensus 292 ~~~i~~~-~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~ 336 (361)
..|+... ...|+.|+...-- .=-.-.|+ .||.-||..|....
T Consensus 61 ~~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 61 RKWAEDNEVQNCMACGKGFSV--TVRRHHCR-QCGNIFCAECSAKN 103 (125)
T ss_dssp CCCCCGGGCCBCTTTCCBCCS--SSCCEECT-TTCCEECGGGSCEE
T ss_pred CccccCCCCCCCcCcCCcccc--ccccccCC-CCCeEEChHHhCCc
Confidence 3466443 5689999987641 22345788 79999999998654
No 217
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=39.35 E-value=48 Score=24.80 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHH
Q 018073 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVH 112 (361)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~ 112 (361)
.++|+-|++..++|...|.-.|+..++|+-..+
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai 98 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAI 98 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHH
Confidence 366788888899999999999999999976543
No 218
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=38.82 E-value=87 Score=21.14 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHh
Q 018073 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (361)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~ 115 (361)
+...++....-++..|+.|+-||---+|++...+..|
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH
Confidence 4455666777889999999999999999999888766
No 219
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=38.19 E-value=14 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=14.0
Q ss_pred cccHhhHHHHHHhhhcC
Q 018073 164 PFCSSCWTGYISTAIND 180 (361)
Q Consensus 164 ~fC~~Cl~~~i~~~i~~ 180 (361)
-||++||..|+..+-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999876543
No 220
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.84 E-value=21 Score=25.89 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=24.5
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceecccccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 335 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~ 335 (361)
...|..|+...-.. =-.-.|+ .||.-||..|...
T Consensus 9 ~~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF--KKEYGCK-NCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSS--SCEEECS-SSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCc--cccccCC-CCCCEEChhHcCC
Confidence 36788888865421 2345688 7999999999755
No 221
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=37.81 E-value=14 Score=27.40 Aligned_cols=16 Identities=25% Similarity=0.756 Sum_probs=13.4
Q ss_pred cccHhhHHHHHHhhhc
Q 018073 164 PFCSSCWTGYISTAIN 179 (361)
Q Consensus 164 ~fC~~Cl~~~i~~~i~ 179 (361)
-||++||..|+..+-.
T Consensus 41 GFCRNCLskWy~~aA~ 56 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAAT 56 (104)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999987654
No 222
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=37.33 E-value=11 Score=27.74 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=33.1
Q ss_pred CccccccccccccCCccccccC-CCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchh
Q 018073 140 EEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~ 201 (361)
..+.|..|.-.. . -.+.| .|++|..|+...+.. .=+|| -|+..++..
T Consensus 27 G~~nCKsCWf~~--k--~LV~C~dHYLCl~CLtlmL~~---------SdrCp--IC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN--K--GLVECNNHYLCLNCLTLLLSV---------SNRCP--ICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC--S--SEEECSSCEEEHHHHHHTCSS---------SSEET--TTTEECCCC
T ss_pred CcccChhhcccc--C--CeeeecchhhHHHHHHHHHhh---------ccCCc--ccCCcCCcc
Confidence 467899997432 2 22344 699999999887754 34688 899887654
No 223
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=37.20 E-value=28 Score=32.17 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
+...+.+.|.+.....|...|+.++|+.++.+..||..
T Consensus 47 ~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 47 QKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 36778899999999999999999999999999999954
No 224
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=36.67 E-value=17 Score=28.72 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=21.5
Q ss_pred CCccccCCCCCCcceeeecCC--CCceEEe-ccCCcc
Q 018073 228 RKTKWCPAPGCDYAVDFVVGS--GNYDVTC-RCSYSF 261 (361)
Q Consensus 228 ~~~~~CP~p~C~~~i~~~~~~--~~~~v~C-~C~~~f 261 (361)
..+++|| .|+..+.+.... +...+.| .|++..
T Consensus 22 ~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4689999 599988765332 3345677 677654
No 225
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=36.66 E-value=18 Score=28.46 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=30.9
Q ss_pred eccCCCcCCCc---cchhHHhhcCChHHHHHHHHHHHHHHHhhCCCccccCCCCCCcce
Q 018073 187 LRCPDPSCGAA---VGQDMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAV 242 (361)
Q Consensus 187 i~CP~~~C~~~---i~~~~i~~ll~~~~~~~y~~~~~~~~i~~~~~~~~CP~p~C~~~i 242 (361)
..|| .|+.. +....|+.++.++.+. +.. ..+.+|++|+|.-+.
T Consensus 2 ~~CP--~Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~-~~y~~C~~~~C~VvY 47 (130)
T 2hu9_A 2 MRCP--ECSTEGWRVLPLTVGAHVKEGLWS----------KIK-GDFYFCSLESCEVVY 47 (130)
T ss_dssp CBCT--TTCCBCEEECHHHHHHHBCGGGGG----------GCC-SCEEECCCTTCSEEE
T ss_pred CcCC--CCCCcCcCccHHHHHHHhhHHHhc----------cCC-CCEEeECCCCCCEEE
Confidence 4699 88874 6778888888765321 222 478999999998554
No 226
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.14 E-value=70 Score=22.87 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc-CCChHHHHHHhhhc
Q 018073 82 DITRISTVLSISKVAASILLRFY-NWSVSKVHDEWFAD 118 (361)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~-~w~~~~l~e~~~~~ 118 (361)
.|.++.+ +|.+...|+..|++. +||++...+-+|+.
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4555655 699999998888876 59999988777654
No 227
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.87 E-value=4.7 Score=30.23 Aligned_cols=40 Identities=28% Similarity=0.557 Sum_probs=29.2
Q ss_pred CCcccHhhHHHHHHhhhcCCCCeeeeccCCCcCCCccchhH
Q 018073 162 GHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (361)
Q Consensus 162 gH~fC~~Cl~~~i~~~i~~~~~~~~i~CP~~~C~~~i~~~~ 202 (361)
.|.-|..|+.......+..+....++.||. .|...+..-.
T Consensus 13 ~h~HC~~C~~~~C~~~~~~~~~C~~i~CP~-~Cga~i~rck 52 (100)
T 2yre_A 13 QHSHCVNCVSRRCMTRPEPGISCDLIGCPL-VCGAVFHSCK 52 (100)
T ss_dssp CCTTGGGCCCTTCCCCCCTTTCCCEEECTT-CCSCEEEHHH
T ss_pred cchhHhhhcccccCCCCCCCCeeeeeeCCc-ccCCeeehhh
Confidence 478888888887777777776678999983 6877655443
No 228
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.39 E-value=43 Score=22.61 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc-CCChHHHHHHhhhc
Q 018073 82 DITRISTVLSISKVAASILLRFY-NWSVSKVHDEWFAD 118 (361)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~-~w~~~~l~e~~~~~ 118 (361)
.|.++.+ +|.+...|+..|+.. +||++...+-++..
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 12 ALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 3555655 689999999999988 79999988776653
No 229
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=35.37 E-value=13 Score=20.22 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=17.2
Q ss_pred eeeccCCCcCCCccchhHHhhcC
Q 018073 185 LMLRCPDPSCGAAVGQDMIYLLS 207 (361)
Q Consensus 185 ~~i~CP~~~C~~~i~~~~i~~ll 207 (361)
+.+.|| .|...++...|+..+
T Consensus 5 f~vqcp--vcqq~mpaahin~hl 25 (29)
T 3vhs_A 5 FQVQCP--VCQQMMPAAHINSHL 25 (29)
T ss_dssp CEEECT--TTCCEEEGGGHHHHH
T ss_pred eeeeCh--HHHHhCcHHHHHHHH
Confidence 578999 999999888887644
No 230
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.21 E-value=21 Score=25.58 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=24.2
Q ss_pred CCCCccccccccccccCCc--cccccCCCcccHhhHHH
Q 018073 137 PDGEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTG 172 (361)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~ 172 (361)
+......|.+|...|..-. -.--.||..||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3444567999998875321 12235999999999644
No 231
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=34.86 E-value=18 Score=25.98 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=27.6
Q ss_pred CccccccCCcCCCCCCchhHHHHHHhhhhhhHHHHHHHhhcCCCCCCCcceeecCCCCce--eecCCCccceecccccc
Q 018073 259 YSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHM--TCTPPCKFEFCWLCLGQ 335 (361)
Q Consensus 259 ~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~CP~C~~~IeK~~GCnhm--~C~~~C~~~FCw~C~~~ 335 (361)
..+|+.|+..-|....|.+. .+|..|+..- || .|..+=...+||.|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~g-------h~~~~c~~p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDDN-------EKAKPKVLPFHTIYCYNCGGK 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC--------------------CCCBCSSSSCB
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccCC-------cccccccCCCCCCeecccCCC
Confidence 46799999999998888642 2577776542 22 13201245789999865
No 232
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.80 E-value=12 Score=22.07 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=11.3
Q ss_pred CCccccccccccccC
Q 018073 139 GEEMTCGICFENYPS 153 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~ 153 (361)
...+.||||+..+..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 346899999987753
No 233
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=32.82 E-value=26 Score=20.66 Aligned_cols=16 Identities=31% Similarity=0.918 Sum_probs=12.3
Q ss_pred cccccCCcCCCCCCch
Q 018073 261 FCWNCTEEAHRPVDCD 276 (361)
Q Consensus 261 fC~~C~~~~H~~~~C~ 276 (361)
.|++|++..|....|.
T Consensus 2 ~C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCR 17 (37)
T ss_dssp CBSSSCCSSCCTTTSS
T ss_pred cccccCCCCcchhhCc
Confidence 5888888888776665
No 234
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=32.54 E-value=15 Score=22.10 Aligned_cols=16 Identities=31% Similarity=0.845 Sum_probs=10.6
Q ss_pred cccccCCcCCCCCCch
Q 018073 261 FCWNCTEEAHRPVDCD 276 (361)
Q Consensus 261 fC~~C~~~~H~~~~C~ 276 (361)
.|++|++.-|....|.
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 4677777777665554
No 235
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.96 E-value=23 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=12.3
Q ss_pred CCCCCCcceeecCCCCceeecCCCcc
Q 018073 301 PCPRCKRPIEKNQGCMHMTCTPPCKF 326 (361)
Q Consensus 301 ~CP~C~~~IeK~~GCnhm~C~~~C~~ 326 (361)
.|..|+..++...+ .-|.|. .||+
T Consensus 23 ~C~~Cg~~~~l~~~-~~iRC~-~CG~ 46 (63)
T 3h0g_L 23 LCADCGARNTIQAK-EVIRCR-ECGH 46 (63)
T ss_dssp BCSSSCCBCCCCSS-SCCCCS-SSCC
T ss_pred ECCCCCCeeecCCC-CceECC-CCCc
Confidence 46666655554333 345555 4554
No 236
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.86 E-value=19 Score=31.97 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 338 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 338 (361)
-.||-|..++. ..++-. .|||.||-.|...|-.
T Consensus 182 l~CPIcl~~f~-----DPVts~-~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISR-KCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp SBCTTTSSBCS-----SEEEES-SSCCEEEHHHHHHHST
T ss_pred eECcCccCccc-----CCeeeC-CCCCcccHHHHHHHHH
Confidence 57999998885 567765 5999999999877654
No 237
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.84 E-value=27 Score=29.90 Aligned_cols=34 Identities=24% Similarity=0.580 Sum_probs=25.5
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceeccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW 336 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~ 336 (361)
+.|+.|+...- ----.-.|+ .||.-||..|....
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr-~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCR-NCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECT-TTCCEECSTTSCEE
T ss_pred CccCCCCCccC--CcccccccC-CcCCEEChHHhCCe
Confidence 68999998763 222346788 79999999998654
No 238
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.77 E-value=81 Score=20.92 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 80 EEDITRISTVL-SISKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 80 ~~~i~~v~~~l-~i~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
++.|..+.+++ +|........|+..+.+++..++.++.
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45566666666 778899999999999999998887654
No 239
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.56 E-value=70 Score=25.77 Aligned_cols=35 Identities=26% Similarity=0.608 Sum_probs=28.8
Q ss_pred hcCCCCCCCcceeecCCCCceeecCCCccceeccccc
Q 018073 298 NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 334 (361)
Q Consensus 298 ~~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~ 334 (361)
+.+.|..|..+.-...+. -.+|. .|++.+|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~-~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCL-ECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECT-TTCCEECGGGEE
T ss_pred CCccchhhcCccccccCC-CCcCC-CCCchhhccccc
Confidence 457899999998777777 46787 799999999983
No 240
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=31.19 E-value=93 Score=21.08 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHh
Q 018073 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (361)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~ 115 (361)
+.|..|.+..+++..++.-.|...+||+++.++.+
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56888899999999999999999999999988755
No 241
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.38 E-value=21 Score=28.90 Aligned_cols=31 Identities=29% Similarity=0.611 Sum_probs=22.4
Q ss_pred CccccccccccccCC---ccccccCCCcccHhhH
Q 018073 140 EEMTCGICFENYPSD---RLLAAACGHPFCSSCW 170 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~---~~~~l~CgH~fC~~Cl 170 (361)
....|.+|..+|..- ...-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999986431 1223469999999997
No 242
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=30.12 E-value=77 Score=24.35 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.|.++.+ +|.+...|+..|+..+||++...+-++..
T Consensus 81 ~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 81 IVAIITS-MGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566655 69999999999999999999888776653
No 243
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.80 E-value=82 Score=20.59 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.4
Q ss_pred CC-CHHHHHHHHHHcCCChHHHHHHhhh
Q 018073 91 SI-SKVAASILLRFYNWSVSKVHDEWFA 117 (361)
Q Consensus 91 ~i-~~~~a~~LL~~~~w~~~~l~e~~~~ 117 (361)
+. .......+|+..+||+++.++++..
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 44 6777899999999999999887654
No 244
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.78 E-value=26 Score=24.34 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=21.7
Q ss_pred cccccccccccCCc--cccccCCCcccHhhHHH
Q 018073 142 MTCGICFENYPSDR--LLAAACGHPFCSSCWTG 172 (361)
Q Consensus 142 ~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~ 172 (361)
..|.+|...|..-. ..--.||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 36999998775321 12235999999999754
No 245
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.66 E-value=13 Score=31.20 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=40.4
Q ss_pred cccccccccccCCc----cccc-cCCCcccHhhHHHHHH--hhhcCCCCeeeeccCCCcCCCccchhHHhhcCChHHHHH
Q 018073 142 MTCGICFENYPSDR----LLAA-ACGHPFCSSCWTGYIS--TAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVK 214 (361)
Q Consensus 142 ~~C~IC~e~~~~~~----~~~l-~CgH~fC~~Cl~~~i~--~~i~~~~~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ 214 (361)
..|+||...+..++ ++.. .|..-|...|..---. ..+.+-+......|| .|...-+.. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 46999998887654 4444 4887888888742211 112110001257899 898765543 433344444444
Q ss_pred HHHH
Q 018073 215 YNRY 218 (361)
Q Consensus 215 y~~~ 218 (361)
+.++
T Consensus 80 l~~v 83 (183)
T 3lqh_A 80 LKQV 83 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 246
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=29.51 E-value=40 Score=29.31 Aligned_cols=22 Identities=27% Similarity=0.827 Sum_probs=16.4
Q ss_pred hHHHHHHHhhcCCCCCCCc-ceee
Q 018073 289 SENMNWILANSKPCPRCKR-PIEK 311 (361)
Q Consensus 289 ~~~~~~i~~~~k~CP~C~~-~IeK 311 (361)
.-+..|+..|. .||.|+. +|.+
T Consensus 25 VLTE~Wv~~n~-yCPnCG~~~l~~ 47 (257)
T 4esj_A 25 ILTEDWVYRQS-YCPNCGNNPLNH 47 (257)
T ss_dssp HHHHHHHHHHC-CCTTTCCSSCEE
T ss_pred hhhHHHHHHCC-cCCCCCChhhhh
Confidence 34668988774 8999998 5653
No 247
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.05 E-value=22 Score=23.91 Aligned_cols=22 Identities=36% Similarity=0.869 Sum_probs=14.9
Q ss_pred hcCCCCCCCcceeecCCCCceeecCCCc
Q 018073 298 NSKPCPRCKRPIEKNQGCMHMTCTPPCK 325 (361)
Q Consensus 298 ~~k~CP~C~~~IeK~~GCnhm~C~~~C~ 325 (361)
+...||.|+.+.. .|..|. .||
T Consensus 29 ~l~~c~~cGe~~~-----~H~vc~-~CG 50 (60)
T 3v2d_5 29 TLVPCPECKAMKP-----PHTVCP-ECG 50 (60)
T ss_dssp CCEECTTTCCEEC-----TTSCCT-TTC
T ss_pred ceeECCCCCCeec-----ceEEcC-CCC
Confidence 3467999988876 455565 455
No 248
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=27.77 E-value=22 Score=22.58 Aligned_cols=17 Identities=41% Similarity=1.105 Sum_probs=11.8
Q ss_pred ccccccCCcCCCCCCch
Q 018073 260 SFCWNCTEEAHRPVDCD 276 (361)
Q Consensus 260 ~fC~~C~~~~H~~~~C~ 276 (361)
..|++|++.-|....|.
T Consensus 7 ~~C~~Cg~~GH~a~~C~ 23 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCR 23 (49)
T ss_dssp CBCTTTCCBTCCTTTCC
T ss_pred CeeeecCCCCcChhhCc
Confidence 45777777777766664
No 249
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=27.09 E-value=81 Score=23.80 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChHHHHHHhhhc
Q 018073 80 EEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (361)
Q Consensus 80 ~~~i~~v~~~l~i-~~~~a~~LL~~~~w~~~~l~e~~~~~ 118 (361)
.+.|.++.+ +|+ ....++..|+..+||+++.++.+++.
T Consensus 67 ~~qL~qL~e-MGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 67 QPQLQQLRD-MGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 455555544 566 45788999999999999999988764
No 250
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.07 E-value=39 Score=24.41 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=25.0
Q ss_pred cccCCCCCCcceeeecCCCCceEEe-ccCCccccccCCcCC
Q 018073 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAH 270 (361)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H 270 (361)
+-|| +|...-.+- +..+..|.| .|++..|.-=+..+.
T Consensus 37 VkCp--~C~~~~~VF-ShA~t~V~C~~CgtvL~~PTGGKa~ 74 (86)
T 3iz6_X 37 VKCQ--GCFNITTVF-SHSQTVVVCPGCQTVLCQPTGGKAR 74 (86)
T ss_dssp EECT--TTCCEEEEE-TTCSSCCCCSSSCCCCSCCCSSSCC
T ss_pred EECC--CCCCeeEEE-ecCCcEEEccCCCCEeecCCCCCEE
Confidence 6898 698754333 445677899 899998865444433
No 251
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=26.85 E-value=49 Score=22.59 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=21.5
Q ss_pred cccCCCCCCcceeeecCCCCceEEe-ccCCccccc
Q 018073 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (361)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (361)
+.|| +|...-..- +..+..|.| .|++..|.-
T Consensus 8 VKCp--~C~niq~VF-ShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 8 VKCP--DCEHEQVIF-DHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EECT--TTCCEEEEE-SSCSSCEECSSSCCEEEEC
T ss_pred EECC--CCCCceEEE-ecCceEEEcccCCCEEeec
Confidence 5688 698754332 345677899 899998854
No 252
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=26.51 E-value=1.4e+02 Score=23.72 Aligned_cols=49 Identities=22% Similarity=0.607 Sum_probs=32.8
Q ss_pred CccccccccccccCCccccc-cCCCcccHhhHHHHHH----hhh--cCCCCeeeeccCCCcCCCc
Q 018073 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYIS----TAI--NDGPGCLMLRCPDPSCGAA 197 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~i~----~~i--~~~~~~~~i~CP~~~C~~~ 197 (361)
....|.+|.+. .+++.. .|...||..|+..-+. ..| ..+ .-.|| .|...
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~----~W~C~--~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN----QWYCY--ICHPE 117 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT----CCCCT--TTCCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC----CCEee--cccCc
Confidence 35779999864 344333 5999999999997763 222 333 45788 77654
No 253
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=26.48 E-value=50 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.446 Sum_probs=24.4
Q ss_pred hhcCCCCCCCcceeecCCCCceeecCCCccc
Q 018073 297 ANSKPCPRCKRPIEKNQGCMHMTCTPPCKFE 327 (361)
Q Consensus 297 ~~~k~CP~C~~~IeK~~GCnhm~C~~~C~~~ 327 (361)
.+.+-||.|+.+.+...+=-.+.|. .|+..
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~-~C~~~ 134 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCS-HCRER 134 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEES-SSSCE
T ss_pred hcCCccccCCCcCccCCCceeeeCC-CCCCE
Confidence 3568999999999887777788998 68753
No 254
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.06 E-value=25 Score=22.42 Aligned_cols=31 Identities=23% Similarity=0.596 Sum_probs=18.5
Q ss_pred hcCCCCCCCcceeecCCCCceeecCCCccceecccccccc
Q 018073 298 NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (361)
Q Consensus 298 ~~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~ 337 (361)
.++.||+|++..-... .=+.|.||-|+..+.
T Consensus 11 ~~~~CPrCn~~f~~~~---------sLr~HmkycCp~~v~ 41 (49)
T 2e72_A 11 GRKICPRCNAQFRVTE---------ALRGHMCYCCPEMVE 41 (49)
T ss_dssp SCCCCTTTCCCCSSHH---------HHHHHHHHHCTTTCC
T ss_pred CceeCCcccccccchH---------HHHhhhhhcCcchhh
Confidence 4689999998764110 124455566765543
No 255
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=25.82 E-value=22 Score=30.26 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=23.7
Q ss_pred CCccccccccccccCCccccccCCCcccHhhHHH
Q 018073 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTG 172 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~ 172 (361)
.....|++|-|.+.....+... |-.+|..|...
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~-g~~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLN-GKPVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEET-TEEECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeC-CcEEChhhhcc
Confidence 4468899999988654444333 77899999753
No 256
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=25.20 E-value=40 Score=19.97 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=18.1
Q ss_pred CCCCCCcc---eeecCCCCceeecCCCccc
Q 018073 301 PCPRCKRP---IEKNQGCMHMTCTPPCKFE 327 (361)
Q Consensus 301 ~CP~C~~~---IeK~~GCnhm~C~~~C~~~ 327 (361)
.||.|+.| +.|..+=-.+.|. .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~-aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCM-ACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEE-TTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhh-cCCCc
Confidence 58899865 4455666678887 67764
No 257
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.12 E-value=36 Score=22.82 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=24.8
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHHhhh
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAI 178 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~~~i 178 (361)
=+.|..|-..+... .+...=+..||..|....+....
T Consensus 31 CF~C~~C~~~L~~~-~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 31 CFRCDLCQEVLADI-GFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp TSBCSSSCCBCSSS-CCEEETTEEECHHHHHHHHCCCS
T ss_pred CCEeCCCCCcCCCC-ccEeECCeEECHHHhhhhcCCCC
Confidence 46788887766543 23344678899999887765543
No 258
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.99 E-value=1.2e+02 Score=25.81 Aligned_cols=33 Identities=27% Similarity=0.662 Sum_probs=23.4
Q ss_pred ccccccccccccCC--ccccccCCCcccHhhHHHH
Q 018073 141 EMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (361)
Q Consensus 141 ~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~~ 173 (361)
...|.+|...|..- ...--.||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 35899999887532 1223369999999998754
No 259
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.52 E-value=41 Score=28.89 Aligned_cols=35 Identities=26% Similarity=0.632 Sum_probs=25.1
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccceecccccccc
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 337 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~~ 337 (361)
..|+.|+...-- --..-.|+ .||.-||..|.....
T Consensus 165 ~~C~~C~~~F~~--~~RrhHCR-~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 165 EECHRCRVQFGV--MTRKHHCR-ACGQIFCGKCSSKYS 199 (226)
T ss_dssp SBCTTTCCBCBT--TBCCEECT-TTCCEECTTTCCEEE
T ss_pred CCCcCcCCCCCc--cccccccC-CCcCEeChhhcCCcc
Confidence 578888876541 12345688 799999999987543
No 260
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.43 E-value=66 Score=19.02 Aligned_cols=24 Identities=17% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Q 018073 82 DITRISTVLSISKVAASILLRFYN 105 (361)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~ 105 (361)
.+.+|+..|+|+.......++.|+
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 467899999999988877776654
No 261
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.41 E-value=32 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.797 Sum_probs=15.0
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCcc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKF 326 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~ 326 (361)
...||.|+.+.. .|..|. .||+
T Consensus 30 l~~c~~cG~~~~-----pH~vc~-~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKL-----SHHICP-NCGY 51 (60)
T ss_dssp CEECTTTCCEEC-----TTBCCT-TTCB
T ss_pred ceECCCCCCEeC-----CceEcC-CCCc
Confidence 457999998865 466665 5653
No 262
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=24.34 E-value=58 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=12.2
Q ss_pred ccccccCCcCCCCCCch
Q 018073 260 SFCWNCTEEAHRPVDCD 276 (361)
Q Consensus 260 ~fC~~C~~~~H~~~~C~ 276 (361)
..|++|.+.-|....|.
T Consensus 43 ~~C~~Cg~~GH~~~~C~ 59 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCP 59 (124)
T ss_dssp SCSSSSSCSSSSTTTSC
T ss_pred ccccccCCCCCccccCc
Confidence 36888887777776665
No 263
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.31 E-value=36 Score=26.84 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=24.6
Q ss_pred cCCCCCCCcceeecCCCCceeecCCCccceeccccccc
Q 018073 299 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW 336 (361)
Q Consensus 299 ~k~CP~C~~~IeK~~GCnhm~C~~~C~~~FCw~C~~~~ 336 (361)
...|..|..+.-..++.. ..|. .|++.+|-.|+...
T Consensus 55 ~~~C~~C~~~~g~l~~~g-~~C~-~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSAS-VVCE-DCKKNVCTKCGVET 90 (134)
T ss_dssp SSBCSSSCCBCSTTSCCE-EECT-TTCCEEETTSEEEC
T ss_pred CccccccCCCcccccCCC-CCCC-CCCcccccccCCcc
Confidence 456888887775445555 5666 68888888887643
No 264
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.25 E-value=1.5e+02 Score=21.24 Aligned_cols=33 Identities=18% Similarity=0.617 Sum_probs=23.6
Q ss_pred CccccccccccccCCccccc-cCCCcccHhhHHHH
Q 018073 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGY 173 (361)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~~ 173 (361)
....|.||- .++.+.++.. -|+-.|...||+..
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceeccccccccccHhhcccc
Confidence 456799995 3444555444 38999999999975
No 265
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.18 E-value=18 Score=24.99 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=10.7
Q ss_pred cCCCCCCCccee
Q 018073 299 SKPCPRCKRPIE 310 (361)
Q Consensus 299 ~k~CP~C~~~Ie 310 (361)
++.||.|+++++
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 578999999997
No 266
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=24.11 E-value=17 Score=32.97 Aligned_cols=28 Identities=14% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCCCCCCcceeecC-CCCceeecCCCccce
Q 018073 300 KPCPRCKRPIEKNQ-GCMHMTCTPPCKFEF 328 (361)
Q Consensus 300 k~CP~C~~~IeK~~-GCnhm~C~~~C~~~F 328 (361)
.+||+|+.+|.+.. .=|...|. .|+|++
T Consensus 25 ~kc~~~~~~~~~~~l~~~~~v~~-~~~~~~ 53 (304)
T 2f9y_B 25 TKCDSCGQVLYRAELERNLEVCP-KCDHHM 53 (304)
T ss_dssp ECCTTTCCCEETTHHHHTTTBCT-TTCCBC
T ss_pred HhhhhccchhhHHHHHHHhCCCC-CCCCCC
Confidence 78999999998763 23788897 699886
No 267
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=24.08 E-value=47 Score=17.91 Aligned_cols=18 Identities=28% Similarity=0.853 Sum_probs=14.8
Q ss_pred ccccccCCcCCCCCCchh
Q 018073 260 SFCWNCTEEAHRPVDCDT 277 (361)
Q Consensus 260 ~fC~~C~~~~H~~~~C~~ 277 (361)
..|+.|++.-|....|..
T Consensus 3 ~~Cf~CG~~GH~ardC~~ 20 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CeeEeCCCCCcccccCCC
Confidence 469999999998877764
No 268
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.93 E-value=40 Score=27.42 Aligned_cols=35 Identities=26% Similarity=0.621 Sum_probs=24.4
Q ss_pred CCccccccccccccCCccccc---cCCCcccHhhHHHHHHh
Q 018073 139 GEEMTCGICFENYPSDRLLAA---ACGHPFCSSCWTGYIST 176 (361)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l---~CgH~fC~~Cl~~~i~~ 176 (361)
.....|.||.+. ..++.. .|...||..|+...+..
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 345678888763 344433 48889999999987754
No 269
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.26 E-value=49 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.435 Sum_probs=21.2
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccce
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
-.||.|+..-.|..+-.-=.|. .|+..|
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~-~C~~~~ 54 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCS-CCKKTV 54 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCS-SSCCCC
T ss_pred ccCCCCCCceeEecCCCeEECC-CCCCEE
Confidence 5899999887777776555787 677665
No 270
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=22.72 E-value=62 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=21.7
Q ss_pred cccCCCCCCcceeeecCCCCceEEe-ccCCccccc
Q 018073 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (361)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (361)
+-|| +|...-.+- +..+..|.| .|++..|.-
T Consensus 33 VkCp--~C~n~q~VF-ShA~t~V~C~~Cg~~L~~P 64 (81)
T 2xzm_6 33 VKCA--QCQNIQMIF-SNAQSTIICEKCSAILCKP 64 (81)
T ss_dssp EECS--SSCCEEEEE-TTCSSCEECSSSCCEEEEE
T ss_pred eECC--CCCCeeEEE-ecCccEEEccCCCCEEeec
Confidence 5788 698754332 445677899 899998854
No 271
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.71 E-value=65 Score=21.79 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=21.4
Q ss_pred cccCCCCCCcceeeecCCCCceEEe-ccCCccccc
Q 018073 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (361)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (361)
+.|| +|...-..- +..+..|.| .|++..|.-
T Consensus 16 VkCp--~C~~~q~VF-Sha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 16 VKCI--DCGNEQIVF-SHPATKVRCLICGATLVEP 47 (63)
T ss_dssp EECS--SSCCEEEEE-SSCSSCEECSSSCCEEEEC
T ss_pred EECC--CCCCeeEEE-ecCCeEEEccCcCCEEecC
Confidence 5788 598754332 445677899 899988853
No 272
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=22.60 E-value=29 Score=24.74 Aligned_cols=12 Identities=33% Similarity=1.237 Sum_probs=9.9
Q ss_pred eeeccCCCcCCCcc
Q 018073 185 LMLRCPDPSCGAAV 198 (361)
Q Consensus 185 ~~i~CP~~~C~~~i 198 (361)
+.++|| .|+..+
T Consensus 50 F~FkCP--~CgEEF 61 (95)
T 2k5c_A 50 FVFKCP--VCGEEF 61 (95)
T ss_dssp SEEECT--TTCCEE
T ss_pred HhhcCC--CccHHH
Confidence 689999 898765
No 273
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.58 E-value=47 Score=24.03 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=24.1
Q ss_pred CccccCCCCCCcceeeecCCCCceEEe-ccCCccccccCC
Q 018073 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 267 (361)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 267 (361)
....|..++|.... ...+.| .|+..||...+.
T Consensus 24 ~~~~C~~~~Ck~~~-------~l~f~C~~C~~~FC~~HR~ 56 (86)
T 1wfe_A 24 KSYSCSFKGCTDVE-------LVAVICPYCEKNFCLRHRH 56 (86)
T ss_dssp CCEECCSTTCCCEE-------SSCEECTTTCCEECGGGCS
T ss_pred CCCCCCCcCCCCCC-------ccceECCCCCcccccccCC
Confidence 34579988998652 245799 799999998774
No 274
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.11 E-value=1.5e+02 Score=19.59 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=29.3
Q ss_pred eeCHHHHHHHHHH-----HHHHHHHHhCCCHHHHHHHHHH
Q 018073 69 VLTEADIRQRQEE-----DITRISTVLSISKVAASILLRF 103 (361)
Q Consensus 69 ~l~~~~i~~~~~~-----~i~~v~~~l~i~~~~a~~LL~~ 103 (361)
.+|+.+|...+.. +|+.++..+++++++..-+|+.
T Consensus 9 ~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 9 MITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp CCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHH
Confidence 4678888888877 5899999999999999888864
No 275
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.78 E-value=51 Score=22.32 Aligned_cols=26 Identities=35% Similarity=0.951 Sum_probs=19.2
Q ss_pred cCCCCC--CCcceeecCCCCceeecCCCccceec
Q 018073 299 SKPCPR--CKRPIEKNQGCMHMTCTPPCKFEFCW 330 (361)
Q Consensus 299 ~k~CP~--C~~~IeK~~GCnhm~C~~~C~~~FCw 330 (361)
.++|.. |+.... .-+.|. .|+..||-
T Consensus 12 ~~~Cs~~~Ck~~~l-----l~f~C~-~C~~~FC~ 39 (63)
T 1x4v_A 12 TNKCERAGCRQREM-----MKLTCE-RCSRNFCI 39 (63)
T ss_dssp CCCCCSTTCCCCCS-----SCCBCS-SSCCBCCH
T ss_pred CCCCCccCCCCCCc-----cceECC-CCCcccCc
Confidence 468886 887621 357898 79999995
No 276
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.18 E-value=59 Score=21.58 Aligned_cols=34 Identities=21% Similarity=0.648 Sum_probs=22.0
Q ss_pred ccccccccccccCCccccccCCCcccHhhHHHHHH
Q 018073 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYIS 175 (361)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~~i~ 175 (361)
=+.|..|-..+.... +...=+..||..|+...+.
T Consensus 31 CF~C~~C~~~L~~~~-~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 31 CFVCVTCSKKLAGQR-FTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTBCTTTCCBCTTSC-EEECSSCEEEHHHHHHHHT
T ss_pred cCEECCCCCCCCCCc-cEeECCEEECHHHhHHHhc
Confidence 467888877665332 3334477899999876654
No 277
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=21.17 E-value=48 Score=29.76 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=11.3
Q ss_pred CCCCCCCcceeec
Q 018073 300 KPCPRCKRPIEKN 312 (361)
Q Consensus 300 k~CP~C~~~IeK~ 312 (361)
++||.|+.+|++.
T Consensus 252 ~pC~~CGt~I~~~ 264 (287)
T 3w0f_A 252 PNCDQCHSKITVC 264 (287)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEEEEE
Confidence 4999999999864
No 278
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=21.07 E-value=53 Score=19.54 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=20.4
Q ss_pred CCceEEe-ccCCccccccCC-cCCCCCC
Q 018073 249 GNYDVTC-RCSYSFCWNCTE-EAHRPVD 274 (361)
Q Consensus 249 ~~~~v~C-~C~~~fC~~C~~-~~H~~~~ 274 (361)
....+.| .++...|..|.. ..|.+++
T Consensus 11 e~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 11 ERLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SSCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred CeeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 3466789 899999999987 6787653
No 279
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.89 E-value=84 Score=27.29 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCccccCCCCCCcc-e-eeecCCCCceEEe-ccCCcccc
Q 018073 217 RYFIRSYVEDNRKTKWCPAPGCDYA-V-DFVVGSGNYDVTC-RCSYSFCW 263 (361)
Q Consensus 217 ~~~~~~~i~~~~~~~~CP~p~C~~~-i-~~~~~~~~~~v~C-~C~~~fC~ 263 (361)
|.+.+.++..+ .+||+ |+.. + .+.......++.| .|+..|=.
T Consensus 24 RVLTE~Wv~~n---~yCPn--CG~~~l~~f~nN~PVaDF~C~~C~EeyEL 68 (257)
T 4esj_A 24 RILTEDWVYRQ---SYCPN--CGNNPLNHFENNRPVADFYCNHCSEEFEL 68 (257)
T ss_dssp HHHHHHHHHHH---CCCTT--TCCSSCEEC----CCCEEECTTTCCEEEE
T ss_pred hhhhHHHHHHC---CcCCC--CCChhhhhccCCCcccccccCCcchhhee
Confidence 45666777664 48996 8763 3 3433333345666 56555433
No 280
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.69 E-value=61 Score=22.82 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=22.8
Q ss_pred CCCccccccccccccCCcc---ccccCCCcccHhhH
Q 018073 138 DGEEMTCGICFENYPSDRL---LAAACGHPFCSSCW 170 (361)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~---~~l~CgH~fC~~Cl 170 (361)
....-.|..|.+.+..--. +-..|.|..|..|=
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4456789999998753211 12359999999984
No 281
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.64 E-value=1.9e+02 Score=20.05 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=21.2
Q ss_pred HHHHHHHHHH----------HHHHHHHhCCCHHHHHHHH
Q 018073 73 ADIRQRQEED----------ITRISTVLSISKVAASILL 101 (361)
Q Consensus 73 ~~i~~~~~~~----------i~~v~~~l~i~~~~a~~LL 101 (361)
.+|...+.+. +.+|++.|+|++..++--|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 4555555555 8999999999987776655
No 282
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.58 E-value=49 Score=28.73 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=16.0
Q ss_pred CCCCCCCc----ceeecCCCCceeecCCCccc
Q 018073 300 KPCPRCKR----PIEKNQGCMHMTCTPPCKFE 327 (361)
Q Consensus 300 k~CP~C~~----~IeK~~GCnhm~C~~~C~~~ 327 (361)
-+||.|+- .+- ..| +..|. +||+.
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~-~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCY-VCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEET-TTCCE
T ss_pred CcCCCCCCCCCceEe-CCC--Ceecc-cCCCc
Confidence 59999987 333 345 57777 57763
No 283
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=20.49 E-value=63 Score=26.04 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=18.4
Q ss_pred CccccCCCCC-C------cceeeecCCCCceEEe-ccCCcc
Q 018073 229 KTKWCPAPGC-D------YAVDFVVGSGNYDVTC-RCSYSF 261 (361)
Q Consensus 229 ~~~~CP~p~C-~------~~i~~~~~~~~~~v~C-~C~~~f 261 (361)
....||+|+| . ..+............| .|...|
T Consensus 104 gv~~C~Np~CITn~E~v~s~F~v~~~~~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 104 NVFPCPNSNCITHGEPVTSSFSIKKTKGNIGLKCKYCEKTF 144 (153)
T ss_dssp SSSCCSCTTCTTSSSSCCCCEEEEEETTEEEEEETTTCCEE
T ss_pred CeEEcCCCCCCcCCcccccEEEEeecCCCCEEEeeCCCCEe
Confidence 4678999999 3 1222211111334678 787654
No 284
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.36 E-value=55 Score=23.51 Aligned_cols=28 Identities=29% Similarity=0.599 Sum_probs=21.3
Q ss_pred CCCCCCCcceeecCCCCceeecCCCccce
Q 018073 300 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 328 (361)
Q Consensus 300 k~CP~C~~~IeK~~GCnhm~C~~~C~~~F 328 (361)
-.||.|+..-.|..+-.-=.|. .|+..|
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~-kCg~~~ 63 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQ-KCGATF 63 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEET-TTCCEE
T ss_pred cCCCCCCCceeEecCcCeEEcC-CCCCEE
Confidence 5899999887777665555788 687765
No 285
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.27 E-value=19 Score=19.03 Aligned_cols=11 Identities=36% Similarity=0.885 Sum_probs=8.9
Q ss_pred ceecccccccc
Q 018073 327 EFCWLCLGQWS 337 (361)
Q Consensus 327 ~FCw~C~~~~~ 337 (361)
.||-.|.++|-
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 47888998885
Done!