BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018074
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 338 bits (866), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 169/334 (50%), Positives = 230/334 (68%), Gaps = 18/334 (5%)
Query: 9 SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSN-- 66
SS S+ D R +++ PSIWGD F+N +K + E EKR + LK E+ K++V+
Sbjct: 11 SSPLSSNKDEMRPKADFQPSIWGDLFLNCP--DKNIDAETEKRHQQLKEEVRKMIVAPMA 68
Query: 67 NTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVA 126
N+ K +A ++ +QRLGV+YHF EI++ L+ IY + N D NDLY +
Sbjct: 69 NSTQK-----LAFIDSVQRLGVSYHFTKEIEDELENIYHN--------NNDAENDLYTTS 115
Query: 127 LRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEAC 186
+RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL LY+ASYLRV GE+IL+EA
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175
Query: 187 EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILEL 246
F PL ++V H+L+ + RG+PR+EAR Y+S+Y+ D + N+ +LE
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ-DIESHNKALLEF 234
Query: 247 AKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK 306
AK+DFN+LQ LHR ELSEI RWWKD+DF KLP+ARDR+VE YFWI GVYFEP+YS RK
Sbjct: 235 AKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRK 294
Query: 307 FMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER 340
+TK+IA+AS++DD YD Y T EEL +T+AIER
Sbjct: 295 MLTKVIAMASIVDDTYDSYATYEELIPYTNAIER 328
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/329 (45%), Positives = 219/329 (66%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY + E LK + +L++ +
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----QEIEALKEQTRSMLLATG---RK 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI E L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 293
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/329 (45%), Positives = 219/329 (66%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY + E LK + +L++ +
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----QEIEALKEQTRSMLLATG---RK 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI E L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDIIERLGISYHFEKEIDEILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 293
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/329 (45%), Positives = 218/329 (66%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGM---K 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 293
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/329 (45%), Positives = 218/329 (66%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGM---K 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 293
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/329 (45%), Positives = 217/329 (65%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S EKY K E LK + +L++
Sbjct: 14 EIVRPVADFSPSLWGDQFLSFSIKNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 65
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 66 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 116
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 177 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 235
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKT 295
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 296 ISMISIVDDTFDAYGTVKELEAYTDAIQR 324
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/329 (45%), Positives = 217/329 (65%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S EKY K E LK + +L++
Sbjct: 14 EIVRPVADFSPSLWGDQFLSFSIKNQVAEKYA-----KEIEALKEQTRNMLLATGM---K 65
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 66 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 116
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 177 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 235
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 295
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 296 ISMISIVDDTFDAYGTVKELEAYTDAIQR 324
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 151/326 (46%), Positives = 215/326 (65%), Gaps = 23/326 (7%)
Query: 20 RRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEE 75
R +++ PS+WGD F++ S EKY K E LK + +L++ L +
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYA-----KEIEALKEQTRNMLLATGMK---LAD 53
Query: 76 IVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQH 135
+ +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLLRQH
Sbjct: 54 TLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLLRQH 104
Query: 136 GYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXX 195
G+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 105 GFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES 164
Query: 196 XXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLL 254
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDFNLL
Sbjct: 165 AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLL 223
Query: 255 QALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAI 314
Q LH+ EL+++SRWWKD+DF T LP+ARDR+VECYFW LGVYFEP+YS R + K I++
Sbjct: 224 QMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISM 283
Query: 315 ASVIDDIYDVYGTLEELKLFTHAIER 340
S++DD +D YGT++EL+ +T AI+R
Sbjct: 284 ISIVDDTFDAYGTVKELEAYTDAIQR 309
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 297 bits (761), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 150/329 (45%), Positives = 217/329 (65%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYF LGVYFEP+YS R + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKT 293
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 297 bits (760), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 150/329 (45%), Positives = 217/329 (65%), Gaps = 23/329 (6%)
Query: 17 DVNRRSSNYHPSIWGDHFINVSSN----EKYTNTEVEKRFETLKAEIEKLLVSNNTAWKT 72
++ R +++ PS+WGD F++ S + EKY K E LK + +L++
Sbjct: 12 EIVRPVADFSPSLWGDQFLSFSIDNQVAEKYA-----KEIEALKEQTRNMLLATGMK--- 63
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132
L + + +++ ++RLG++YHFE EI + L IY+ N NC NDL AL+FRLL
Sbjct: 64 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ--NSNC-------NDLCTSALQFRLL 114
Query: 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXX 192
RQHG+ +S +IF KF+DE G+FK L +D GLL LYEAS++R ++ILE+A F
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 193 XXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDF 251
+PL +QV H+LE LH+G+PR+E R +IS IY+ + S +N ++L AKLDF
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDF 233
Query: 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKI 311
NLLQ LH+ EL+++SRWWKD+DF T LP+ARDR+VECYF LGVYFEP+YS R + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKT 293
Query: 312 IAIASVIDDIYDVYGTLEELKLFTHAIER 340
I++ S++DD +D YGT++EL+ +T AI+R
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQR 322
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 244 bits (622), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 199/322 (61%), Gaps = 11/322 (3%)
Query: 20 RRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAI 79
RRS++Y P+ W F+ +SS+ + + + + L+AE+ + + + + TL E++
Sbjct: 15 RRSADYEPNSWDYDFL-LSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELI-- 71
Query: 80 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKV 139
+ +QRLG+ Y FE++I+ AL S G D L+ AL FRLLRQHG++V
Sbjct: 72 -DNVQRLGLGYRFESDIRRALDRFVSS---GGFDGV--TKTSLHATALSFRLLRQHGFEV 125
Query: 140 SADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXX 199
S + F F+D+ G F L D K +L LYEAS+L ++GENIL+EA F
Sbjct: 126 SQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEE 185
Query: 200 XXTP-LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALH 258
L +QV H+LE+PLHR RLEA I Y N+++LELA LD+N++Q+++
Sbjct: 186 KIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDA-NQVLLELAILDYNMIQSVY 244
Query: 259 RIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI 318
+ +L E SRWW+ + ATKL FARDRL+E ++W +GV FEP+YS R + K+ + ++I
Sbjct: 245 QRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTII 304
Query: 319 DDIYDVYGTLEELKLFTHAIER 340
DDIYDVYGTL+EL+LFT A+ER
Sbjct: 305 DDIYDVYGTLDELELFTDAVER 326
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 195/331 (58%), Gaps = 23/331 (6%)
Query: 20 RRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAI 79
RRS NY P++W ++I S N YT R L ++ LL + LE +
Sbjct: 6 RRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLE----L 60
Query: 80 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN-----DLYIVALRFRLLRQ 134
++ L+ LG++ F++EIKE L IY+ H C HNN DLY AL FRLLRQ
Sbjct: 61 IHDLKYLGLSDFFQDEIKEILGVIYNEH---KCF----HNNEVEKMDLYFTALGFRLLRQ 113
Query: 135 HGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXX 193
HG+ +S D+F F++EKG +FKA L D KG+L LYEAS+L +GE+ LE A EF
Sbjct: 114 HGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCL 173
Query: 194 XXXXXXXXTPLVDQ----VEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKL 249
+ + + HSL++PLH + +EAR +I Y A N LI ELAKL
Sbjct: 174 QKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAY-ARRPDMNPLIFELAKL 232
Query: 250 DFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMT 309
+FN++QA H+ EL ++SRWW + F KLPF RDRLVE +FW +G++ ++ RK
Sbjct: 233 NFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAA 292
Query: 310 KIIAIASVIDDIYDVYGTLEELKLFTHAIER 340
II +A+VIDDIYDVYGTL+EL+LFT +R
Sbjct: 293 TIIVLATVIDDIYDVYGTLDELELFTDTFKR 323
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 193/327 (59%), Gaps = 17/327 (5%)
Query: 20 RRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETL---KAEIEKLLVSNNTAWKTLEEI 76
RRS NY+PS W +FI ++ + V + E + K E+EK + LE
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEK----ETDQIRQLE-- 55
Query: 77 VAIVNQLQRLGVAYHFENEIKEALQTIY-DSHVNGNCDVNYDHNNDLYIVALRFRLLRQH 135
+++ LQR+G++ HF+NE KE L +IY D H N DLY +L FRLLR+H
Sbjct: 56 --LIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK--EERDLYSTSLAFRLLREH 111
Query: 136 GYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXX 195
G++V+ ++F F++E+GEFK L++D +GLL LYEAS+L +GE LE A EF
Sbjct: 112 GFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEE 171
Query: 196 XXXXXXTP--LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNL 253
L+ ++ +SL+IPLH + R A +I Y N ++LELA LD N+
Sbjct: 172 KVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRK-RPDMNPVVLELAILDLNI 230
Query: 254 LQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIA 313
+QA + EL E RWW++ F KLPFARDRLVECYFW G+ ++++ R M K+ A
Sbjct: 231 VQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNA 290
Query: 314 IASVIDDIYDVYGTLEELKLFTHAIER 340
+ +VIDDIYDVYGTLEEL+ FT I R
Sbjct: 291 LITVIDDIYDVYGTLEELEQFTDLIRR 317
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 182/322 (56%), Gaps = 15/322 (4%)
Query: 21 RSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIV 80
R+ Y P++W I S + +Y + R + +++ +L + + LE ++
Sbjct: 36 RTGGYQPTLWDFSTIQ-SFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLE----LI 90
Query: 81 NQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVS 140
+ L+RLG++ HFE EI E L + Y + N D DLY ALRFRLLRQ+ + VS
Sbjct: 91 DDLRRLGISCHFEREIVEILNSKY--YTNNEID-----ERDLYSTALRFRLLRQYDFSVS 143
Query: 141 ADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFXXX-XXXXXXX 198
++F F++ KG +FK L +D +GLL LYEAS+L QGE L A +F
Sbjct: 144 QEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLV 203
Query: 199 XXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALH 258
L+ +E +LE+P H + AR +I Y+ N +LELAKLDFN++QA
Sbjct: 204 DKDINLLSSIERALELPTHWRVQMPNARSFIDAYKR-RPDMNPTVLELAKLDFNMVQAQF 262
Query: 259 RIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI 318
+ EL E SRWW +LPF RDR+VECY+W GV ++ R +TKI A+ + I
Sbjct: 263 QQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTI 322
Query: 319 DDIYDVYGTLEELKLFTHAIER 340
DD++D+YGTLEEL+LFT AI+R
Sbjct: 323 DDVFDIYGTLEELQLFTTAIQR 344
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 159/296 (53%), Gaps = 34/296 (11%)
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRF 129
L E + IV+ + RLG+ HFE EIKEAL +Y H N + + N DL AL F
Sbjct: 298 LLERLLIVDNIVRLGIYRHFEKEIKEALDYVY-RHWNER-GIGWGRLNPIADLETTALGF 355
Query: 130 RLLRQHGYKVSADIFKKFRDEKGEF---KAMLTNDAKGLLCLYEASYLRVQGENILEEAC 186
RLLR H Y VS IF F+D G+F D +L LY AS L GENIL+EA
Sbjct: 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAK 415
Query: 187 EFXXXXXXXXXXXXXTP--------LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS- 237
F T L +++++L+ H +PR+EA++Y +Y D +
Sbjct: 416 SFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYAR 475
Query: 238 ----------TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP---FARDR 284
NE LEL KLDFN++Q++H+ E+ ++ W++D + LP FAR+R
Sbjct: 476 IAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGLPLFTFARER 531
Query: 285 LVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER 340
+E YF + +EP+Y+ R TK+ + +V+DD+YD YGTL+ELKLFT A+ R
Sbjct: 532 PLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRR 587
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 13 STKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLL 63
S+ + + RR++N HP++WG ++ S Y ++ +R E L +EI+ +L
Sbjct: 18 SSTSGLIRRTANPHPNVWGYDLVH-SLKSPYIDSSYRERAEVLVSEIKAML 67
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 157/286 (54%), Gaps = 28/286 (9%)
Query: 80 VNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNN---DLYIVALRFRLLRQHG 136
V+ ++RLG+ HF+ EIKEAL +Y SH + + + N D+ A+ R+LR HG
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVY-SHWDER-GIGWARENPVPDIDDTAMGLRILRLHG 334
Query: 137 YKVSADIFKKFRDEKGEFKAMLTNDAKG---LLCLYEASYLRVQGENILEEA--C----- 186
Y VS+D+ K FRDE GEF L +G +L + S++ GE I+EEA C
Sbjct: 335 YNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYL 394
Query: 187 -EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS-------- 237
+ +VE++L+ P H+ MPRLEAR YI Y D+
Sbjct: 395 RNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYM 454
Query: 238 ---TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILG 294
NE LELAKLDFN +Q++H+ EL ++ RWWK F T L F R+R+ E YF
Sbjct: 455 MPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPAS 513
Query: 295 VYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER 340
FEP++S R+ TK ++DD+YD +G+L++LKLFT +++R
Sbjct: 514 FIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKR 559
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 150/287 (52%), Gaps = 23/287 (8%)
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDH-NNDLYIVALRFRL 131
L E +++V+ ++ LG+ HF+ EIK AL +Y D DL AL R
Sbjct: 246 LLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRT 305
Query: 132 LRQHGYKVSADIFKKFRDEKGEFKAMLTN---DAKGLLCLYEASYLRVQGENILEEACEF 188
LR HGY VS+D+ F+DE G F + + + ++ L+ AS L E +++A +F
Sbjct: 306 LRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKF 365
Query: 189 XXX---XXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADN--------- 236
T L ++E+ +E P H +PRLEAR YI Y+ DN
Sbjct: 366 AEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYD-DNYVWQRKTLY 424
Query: 237 ---STRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWIL 293
S N LELAKLDFN++Q+LH+ EL ++RWWK+ A + F R R+ E YF
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYF--S 481
Query: 294 GVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER 340
FEP+YS TR TKI + + DD+ D++ TL+ELK FT ++R
Sbjct: 482 SATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKR 528
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 130/270 (48%), Gaps = 26/270 (9%)
Query: 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHV-NGNCDVNYDHNNDLYIVALRFRL 131
L E + IV++LQRLG++ +FE EIKE L ++ NG C H D+ A+ FRL
Sbjct: 245 LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRL 304
Query: 132 LRQHGYKVSADIFKKFRDEKGEFKAML--TNDA-KGLLCLYEASYLRVQGENILEEACEF 188
LRQHGY+VSAD+FK F E GEF + +N A G+ LY AS L E IL+ A EF
Sbjct: 305 LRQHGYQVSADVFKNFEKE-GEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEF 363
Query: 189 XXXXXXXXXXXX--------XTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS--- 237
L ++ +LEIP + +PR+E R YI Y +N
Sbjct: 364 SYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWI 423
Query: 238 ---------TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 288
N LELAK D+N QA H++E +W+++ + ++ R L+EC
Sbjct: 424 GKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-NRLSEWGVRRSELLEC 482
Query: 289 YFWILGVYFEPKYSTTRKFMTKIIAIASVI 318
Y+ FE + S R K + I
Sbjct: 483 YYLAAATIFESERSHERMVWAKSSVLVKAI 512
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 33 HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHF 92
+++N SSNE + L +E+L VSNN L E+ A+ +L+RL +++
Sbjct: 300 YYLNASSNEI-------RSLCDLPPSLEELNVSNNK----LIELPALPPRLERLIASFNH 348
Query: 93 ENEIKEALQTIYDSHVNGN 111
E+ E Q + HV N
Sbjct: 349 LAEVPELPQNLKQLHVEYN 367
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family Of
Chromatin Binding Proteins
Length = 104
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 47 EVEKRFETLKAEIEKLLVSNNTAWKTL--EEIVAIVNQLQRL-GVAYHF-ENEIKEALQT 102
++++R E LKAEI+KL ++ ++L EE +A++ Q+Q G F +++++ A QT
Sbjct: 29 DLDQRTEDLKAEIDKLATEYXSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAXQT 88
Query: 103 --IYDSHV 108
D H+
Sbjct: 89 YEXVDKHI 96
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 2 RDLKSVLSSKESTKADVNRRSSNYHP 27
+ LKS LSSK++ KADV+ S++Y+
Sbjct: 13 KQLKSFLSSKDTFKADVHGHSASYYA 38
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 27 PSIWGDHFI-----NVSSNEKYTNTEVEKRFETLKAE-IEKLLVSNNTAWKTLEEIVAIV 80
PS+ D FI +S ++ + + E E +K E I++ + + A +TL +I +
Sbjct: 1012 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA-RTLLDIARLR 1070
Query: 81 NQLQRLGVAYHFENEIKEALQTIYDSHVN 109
Q Q+LG+ NE ++ +HVN
Sbjct: 1071 QQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1099
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,057,763
Number of Sequences: 62578
Number of extensions: 384872
Number of successful extensions: 1158
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 31
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)