Query 018074
Match_columns 361
No_of_seqs 144 out of 726
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 6E-109 1E-113 856.7 32.2 330 20-358 1-338 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 1.6E-94 3.4E-99 771.6 25.5 282 70-358 267-572 (784)
3 PLN02592 ent-copalyl diphospha 100.0 5.9E-92 1.3E-96 750.5 27.1 287 70-358 307-633 (800)
4 PF01397 Terpene_synth: Terpen 100.0 2.2E-58 4.8E-63 420.0 15.9 175 30-212 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 99.8 2.1E-19 4.5E-24 168.1 7.6 111 243-353 1-113 (270)
6 cd00868 Terpene_cyclase_C1 Ter 99.6 3.2E-15 6.9E-20 140.8 9.4 101 257-357 1-103 (284)
7 cd00687 Terpene_cyclase_nonpla 97.6 0.00014 2.9E-09 70.1 7.2 81 264-345 18-100 (303)
8 cd00385 Isoprenoid_Biosyn_C1 I 93.8 0.019 4.2E-07 50.8 0.4 48 291-338 2-49 (243)
9 PF11848 DUF3368: Domain of un 29.5 26 0.00056 25.2 0.9 24 125-148 21-44 (48)
10 PRK09177 xanthine-guanine phos 27.4 14 0.0003 33.0 -1.1 22 315-336 87-108 (156)
11 KOG3951 Uncharacterized conser 25.7 1.1E+02 0.0023 30.4 4.5 58 148-213 263-320 (321)
12 cd07604 BAR_ASAPs The Bin/Amph 25.0 1.7E+02 0.0036 27.8 5.7 86 46-150 12-100 (215)
13 PF00156 Pribosyltran: Phospho 24.3 18 0.00039 29.7 -0.9 18 316-333 92-109 (125)
14 PF14164 YqzH: YqzH-like prote 21.9 43 0.00093 26.2 0.8 19 129-147 11-29 (64)
15 TIGR00201 comF comF family pro 21.5 19 0.00041 32.7 -1.4 19 315-333 155-173 (190)
16 COG3063 PilF Tfp pilus assembl 21.4 7.8E+02 0.017 24.1 10.5 139 53-237 52-204 (250)
17 COG2976 Uncharacterized protei 20.5 71 0.0015 30.3 2.2 51 259-318 8-64 (207)
18 PRK11595 DNA utilization prote 20.2 21 0.00045 33.6 -1.5 19 315-333 190-208 (227)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=6e-109 Score=856.74 Aligned_cols=330 Identities=54% Similarity=0.905 Sum_probs=307.6
Q ss_pred CCCCCCCCCCCcc-ccccccCCcccchHHHHHHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHHHHhCcccccHHHH
Q 018074 20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTA--WKTLEEIVAIVNQLQRLGVAYHFENEI 96 (361)
Q Consensus 20 r~~a~~~psiW~~-~fl~~~~~~~~~~~~~~~~~e~LkeeVk~ml~~~~~~--~~d~~~~L~lID~LqRLGI~yhFe~EI 96 (361)
||++||+||+||+ .|++++++... ...+.+++++||++||+||.. . +.|++++|+|||+||||||+|||++||
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~---~~~~~~~~~~l~liD~lqrLGi~~hF~~EI 76 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLED---SEYPVDLFERLWLIDRLQRLGISYHFEDEI 76 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence 7899999999999 66666544321 226889999999999999985 3 579999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCchhhHHHHHHHhhhcCccccccccccccccccccccccchhhHHHHHHHhhhhccC
Q 018074 97 KEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRV 176 (361)
Q Consensus 97 ~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~ 176 (361)
+++|++||++|.+.+ .....|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++
T Consensus 77 ~~~L~~i~~~~~~~~----~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~ 152 (542)
T cd00684 77 KEILDYIYRYWTERG----ESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSF 152 (542)
T ss_pred HHHHHHHHHhhcccc----cccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCC
Confidence 999999999875321 1235799999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhHhhc---CCCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCccccHHHHHHHHhhhHH
Q 018074 177 QGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNL 253 (361)
Q Consensus 177 ~gE~iLdeA~~Ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~~n~~lLelAKlDFn~ 253 (361)
|||+|||||+.||++||++.++. ++++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||+|||+
T Consensus 153 ~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~-~n~~lLelAkldfn~ 231 (542)
T cd00684 153 PGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNI 231 (542)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCcc-ccHHHHHHHHHHHHH
Confidence 99999999999999999999886 78999999999999999999999999999999999999 999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHhCCCCcCccccchhhHHHHHhhccccCCCChhhhHHHHHHHHHHHhhhhhccccCCHHHHHH
Q 018074 254 LQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKL 333 (361)
Q Consensus 254 ~Qs~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfwa~~~~fEPq~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ 333 (361)
||++||+||++++|||+++||.++|||||+|++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+.
T Consensus 232 ~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ 311 (542)
T cd00684 232 LQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELEL 311 (542)
T ss_pred HhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcCC--cchHHHhhhhc
Q 018074 334 FTHAIERCGKLWQQ--MSYQNTCKSVI 358 (361)
Q Consensus 334 ft~aVeRWD~~~~~--~~y~~~~~~~~ 358 (361)
||+||+|||++++. |.||+.|-..+
T Consensus 312 ft~ai~rwd~~~~~~lPe~mk~~~~al 338 (542)
T cd00684 312 FTEAVERWDISAIDQLPEYMKIVFKAL 338 (542)
T ss_pred HHHHHHhccccchhhccHHHHHHHHHH
Confidence 99999999998776 99999886543
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.6e-94 Score=771.61 Aligned_cols=282 Identities=32% Similarity=0.493 Sum_probs=262.5
Q ss_pred cccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchhhHHHHHHHhhhcCccccccccccccc
Q 018074 70 WKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRD 149 (361)
Q Consensus 70 ~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d 149 (361)
+.++++++++||+||||||+|||++||+++|+++|++|.+++ .....|+++|||+|||||||||+||||||++|+|
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~----~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~ 342 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGE----EEIFLDLATCALAFRILRLNGYDVSSDPLKQFAE 342 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccc----cCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCC
Confidence 468999999999999999999999999999999999875321 1224799999999999999999999999999996
Q ss_pred ccccccccc---chhhHHHHHHHhhhhccCCCchHHHHHHHHHHHHHHhHhhc-------CCCchHHHHHHhccCCccCC
Q 018074 150 EKGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-------LSTPLVDQVEHSLEIPLHRG 219 (361)
Q Consensus 150 ~~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~h~~ 219 (361)
++ |++++ .+|++||||||||||+++|||+|||||+.||++||++.++. ++++|+++|+|||++|||++
T Consensus 343 ~~--F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~ 420 (784)
T PLN02279 343 DH--FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYAN 420 (784)
T ss_pred Cc--ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcC
Confidence 54 99988 58999999999999999999999999999999999998763 57789999999999999999
Q ss_pred cchhHHhhhHHhhhcCCc-----------cccHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHhCCCCcCccccchhhHH
Q 018074 220 MPRLEARQYISIYEADNS-----------TRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 288 (361)
Q Consensus 220 l~RleaR~yI~~Y~~~~~-----------~~n~~lLelAKlDFn~~Qs~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~ 288 (361)
+||||||+||++|++++. ++|++||||||+|||+||++||+||++|+|||+++|| .+|||||||++||
T Consensus 421 l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~ 499 (784)
T PLN02279 421 LERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYC 499 (784)
T ss_pred ccHHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHH
Confidence 999999999999988763 4799999999999999999999999999999999999 6999999999999
Q ss_pred HHHhhccccCCCChhhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhccCCcC---CcchHHHhhhhc
Q 018074 289 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERCGKLWQ---QMSYQNTCKSVI 358 (361)
Q Consensus 289 yfwa~~~~fEPq~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ft~aVeRWD~~~~---~~~y~~~~~~~~ 358 (361)
|||++|++||||||.+|++|||+++|+|++||+||+|||+|||++||+||+|||+++. -|.||+.|-..+
T Consensus 500 Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL 572 (784)
T PLN02279 500 YFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSAL 572 (784)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999844 299999996554
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=5.9e-92 Score=750.48 Aligned_cols=287 Identities=33% Similarity=0.527 Sum_probs=262.2
Q ss_pred cccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCC-CCCCCCCCCchhhHHHHHHHhhhcCcccccccccccc
Q 018074 70 WKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGN-CDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFR 148 (361)
Q Consensus 70 ~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~~~-~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~ 148 (361)
+.+++++|+|||+||||||+|||++||+++|+++|++|.+.+ +++......|+++|||+|||||||||+||||||++|+
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~ 386 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE 386 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 468999999999999999999999999999999999865421 1101112479999999999999999999999999999
Q ss_pred cccccccccc---chhhHHHHHHHhhhhccCCCchHHHHHHHHHHHHHHhHhh--c------CCCchHHHHHHhccCCcc
Q 018074 149 DEKGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--H------LSTPLVDQVEHSLEIPLH 217 (361)
Q Consensus 149 d~~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~h 217 (361)
+ +|+|++.+ .+|++|||+|||||||+++||.|||+|+.||+++|++.++ + ++++|+++|+|||++|||
T Consensus 387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~ 465 (800)
T PLN02592 387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWY 465 (800)
T ss_pred C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhh
Confidence 6 89998665 7999999999999999999999999999999999999753 1 367899999999999999
Q ss_pred CCcchhHHhhhHHhhhcCCcc------------ccHHHHHHHHhhhHHHhhhhhHHHHHHHHHHHHhCCCCcCccccchh
Q 018074 218 RGMPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRL 285 (361)
Q Consensus 218 ~~l~RleaR~yI~~Y~~~~~~------------~n~~lLelAKlDFn~~Qs~hq~EL~~lsrWwk~~~l~~~L~faRdr~ 285 (361)
++|||||||+||++|++++++ +|+.||||||+|||+||++||+||++|+||||++||. +|||||||+
T Consensus 466 ~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRdr~ 544 (800)
T PLN02592 466 ASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRSEL 544 (800)
T ss_pred cCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchhHH
Confidence 999999999999999987662 4999999999999999999999999999999999995 999999999
Q ss_pred hHHHHHhhccccCCCChhhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHH--------hccCCcCC--cc------
Q 018074 286 VECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIE--------RCGKLWQQ--MS------ 349 (361)
Q Consensus 286 ve~yfwa~~~~fEPq~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ft~aVe--------RWD~~~~~--~~------ 349 (361)
+|||||++|++||||||.+|++|||+++|+|+|||+||+|||+|||++||+||+ |||.++.. |.
T Consensus 545 ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~ 624 (800)
T PLN02592 545 LLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVK 624 (800)
T ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchh
Confidence 999999999999999999999999999999999999999999999999999997 99998876 55
Q ss_pred hHHHhhhhc
Q 018074 350 YQNTCKSVI 358 (361)
Q Consensus 350 y~~~~~~~~ 358 (361)
||+.|-.++
T Consensus 625 ~mki~f~aL 633 (800)
T PLN02592 625 TGEELVGLL 633 (800)
T ss_pred HHHHHHHHH
Confidence 999996543
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2.2e-58 Score=420.00 Aligned_cols=175 Identities=53% Similarity=0.869 Sum_probs=147.9
Q ss_pred Cccccccc-cCCc----ccchHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHH
Q 018074 30 WGDHFINV-SSNE----KYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY 104 (361)
Q Consensus 30 W~~~fl~~-~~~~----~~~~~~~~~~~e~LkeeVk~ml~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy 104 (361)
|||+|+++ +|.. ....+.+.+++++||++||.||.+ ...+++++|+|||+||||||+|||++||+++|+++|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~---~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPA---SYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHS---SSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 99999953 2211 122478899999999999999986 334899999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCchhhHHHHHHHhhhcCccccccccccccccccccccccchhhHHHHHHHhhhhccCCCchHHHH
Q 018074 105 DSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184 (361)
Q Consensus 105 ~~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 184 (361)
+.|.... ....|||+|||+|||||||||+||||||++|+|++|+|+.++.+||+|||+|||||||+++||+|||+
T Consensus 78 ~~~~~~~-----~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLde 152 (183)
T PF01397_consen 78 RSWDEDN-----EEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDE 152 (183)
T ss_dssp HTTTTTS-----HTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHH
T ss_pred hhccccc-----cccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHH
Confidence 9875321 12359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhcCCC---chHHHHHHhc
Q 018074 185 ACEFSRKHLKSLLSHLST---PLVDQVEHSL 212 (361)
Q Consensus 185 A~~Ft~~~L~~~~~~~~~---~l~~~V~~aL 212 (361)
|+.||++||++++++..+ +|+++|+|||
T Consensus 153 A~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 153 ARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 999999999999885533 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.78 E-value=2.1e-19 Score=168.07 Aligned_cols=111 Identities=35% Similarity=0.444 Sum_probs=102.2
Q ss_pred HHHHHHhhhHHHhhhhhHHHHHHHHHHHHhCCCCcCccccchhhHHHHHhhccccCCCChhhhHHHHHHHHHHHhhhhhc
Q 018074 243 ILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIY 322 (361)
Q Consensus 243 lLelAKlDFn~~Qs~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfwa~~~~fEPq~s~~R~~~tK~~~litiiDD~y 322 (361)
+|+|||+|||+||+.||+|++++++||+++|+..+.+.+|+|++.++||.++.++.|..+..|+++||.++++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999778888999999999999999999998889999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhccCCcCC--cchHHH
Q 018074 323 DVYGTLEELKLFTHAIERCGKLWQQ--MSYQNT 353 (361)
Q Consensus 323 D~yGTleEL~~ft~aVeRWD~~~~~--~~y~~~ 353 (361)
|..|+.++++.|+++++|||+.... |.++..
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 113 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKP 113 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHH
Confidence 9999999999999999999873332 555543
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.59 E-value=3.2e-15 Score=140.78 Aligned_cols=101 Identities=55% Similarity=0.974 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHhCCCCcCccccchhhHHHHHhhccccCCCChhhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHH
Q 018074 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (361)
Q Consensus 257 ~hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfwa~~~~fEPq~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ft~ 336 (361)
.||+|++++++||+++||....+++|.+..++|+|+++++|+|+.+..|+++||.++++.++||.||.+|+.+|+..|++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 48999999999999999976666999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCcCC--cchHHHhhhh
Q 018074 337 AIERCGKLWQQ--MSYQNTCKSV 357 (361)
Q Consensus 337 aVeRWD~~~~~--~~y~~~~~~~ 357 (361)
+++||++.... |.|++.|...
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~ 103 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKA 103 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHH
Confidence 99999976444 8888766543
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=97.62 E-value=0.00014 Score=70.10 Aligned_cols=81 Identities=19% Similarity=0.143 Sum_probs=70.4
Q ss_pred HHHHHHHHhCCCCcCccccchhhHHHHHhhccccCCCChhhhHHHH-HHHHHHHhhhhhcccc-CCHHHHHHHHHHHHhc
Q 018074 264 EISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMT-KIIAIASVIDDIYDVY-GTLEELKLFTHAIERC 341 (361)
Q Consensus 264 ~lsrWwk~~~l~~~L~faRdr~ve~yfwa~~~~fEPq~s~~R~~~t-K~~~litiiDD~yD~y-GTleEL~~ft~aVeRW 341 (361)
+...|.++.|+. .-+.+|++.++++|+.++.++.|+.+..|+.++ +.++++.++||.||.. ++++++..+++.+.+|
T Consensus 18 ~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhc
Confidence 477898888763 345899999999999999999999999999666 9999999999999998 4999999999888888
Q ss_pred cCCc
Q 018074 342 GKLW 345 (361)
Q Consensus 342 D~~~ 345 (361)
....
T Consensus 97 ~~~~ 100 (303)
T cd00687 97 LRGD 100 (303)
T ss_pred cCCC
Confidence 7643
No 8
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=93.84 E-value=0.019 Score=50.84 Aligned_cols=48 Identities=35% Similarity=0.331 Sum_probs=41.5
Q ss_pred HhhccccCCCChhhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHH
Q 018074 291 WILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAI 338 (361)
Q Consensus 291 wa~~~~fEPq~s~~R~~~tK~~~litiiDD~yD~yGTleEL~~ft~aV 338 (361)
|+++++++|+++..|..+++..++..++||++|..++..+.......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~ 49 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV 49 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH
Confidence 567889999999999999999999999999999999887766555443
No 9
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.47 E-value=26 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=17.0
Q ss_pred HHHHHHHhhhcCcccccccccccc
Q 018074 125 VALRFRLLRQHGYKVSADIFKKFR 148 (361)
Q Consensus 125 ~AL~FRLLRqhGy~VSsDvF~~F~ 148 (361)
+.=.+--|+++||++|+++++.+.
T Consensus 21 ~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 21 VKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHH
Confidence 333445558889999998887764
No 10
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=27.35 E-value=14 Score=33.03 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.0
Q ss_pred HHhhhhhccccCCHHHHHHHHH
Q 018074 315 ASVIDDIYDVYGTLEELKLFTH 336 (361)
Q Consensus 315 itiiDD~yD~yGTleEL~~ft~ 336 (361)
+.++||+.|.++|+.++.....
T Consensus 87 VLIVDDIiDTG~Tl~~v~~~l~ 108 (156)
T PRK09177 87 FLVVDDLVDTGGTARAVREMYP 108 (156)
T ss_pred EEEEeeeeCCHHHHHHHHHHHh
Confidence 3468999999999999876654
No 11
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.71 E-value=1.1e+02 Score=30.39 Aligned_cols=58 Identities=28% Similarity=0.335 Sum_probs=40.9
Q ss_pred cccccccccccchhhHHHHHHHhhhhccCCCchHHHHHHHHHHHHHHhHhhcCCCchHHHHHHhcc
Q 018074 148 RDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLE 213 (361)
Q Consensus 148 ~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~l~~~V~~aL~ 213 (361)
-+.+|-|.....-|+||-..|-.+-- ... -+-|=.|..||++||.. .+-+++++|-|+
T Consensus 263 Vhp~GAFv~~s~iDmkgcvrllk~q~-p~~-~e~LLnaLRfTTKHlNd------esTpK~ir~ll~ 320 (321)
T KOG3951|consen 263 VHPNGAFVSNSSIDMKGCVRLLKLQP-PEQ-SECLLNALRFTTKHLND------ESTPKSIRHLLE 320 (321)
T ss_pred ccccccccccCcCcHHHHHHHHHcCC-chh-hHHHHHHHHHHHhhcCC------CCChHHHHHHhc
Confidence 35778888888889999999887632 112 24577899999999853 334566666554
No 12
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=25.03 E-value=1.7e+02 Score=27.76 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCccc-HHHHHHHHHHHHHhCcccc--cHHHHHHHHHHHHhhccCCCCCCCCCCCCch
Q 018074 46 TEVEKRFETLKAEIEKLLVSNNTAWKT-LEEIVAIVNQLQRLGVAYH--FENEIKEALQTIYDSHVNGNCDVNYDHNNDL 122 (361)
Q Consensus 46 ~~~~~~~e~LkeeVk~ml~~~~~~~~d-~~~~L~lID~LqRLGI~yh--Fe~EI~~~L~~iy~~~~~~~~~~~~~~~~DL 122 (361)
+..+.+.++++.-+|.|..+ ..+ .-....++++|+.||=..- .+.+|..+|...-. -+
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~----g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~---------------~l 72 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNS----GLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSV---------------FT 72 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHH---------------HH
Confidence 45677889999999999875 344 5678999999999993221 23357777655422 24
Q ss_pred hhHHHHHHHhhhcCcccccccccccccc
Q 018074 123 YIVALRFRLLRQHGYKVSADIFKKFRDE 150 (361)
Q Consensus 123 ~~~AL~FRLLRqhGy~VSsDvF~~F~d~ 150 (361)
..++=.+-.|++|=-++-...+.+|..+
T Consensus 73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 73 KELAALFKNLMQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677887777766777778644
No 13
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=24.30 E-value=18 Score=29.65 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=13.1
Q ss_pred HhhhhhccccCCHHHHHH
Q 018074 316 SVIDDIYDVYGTLEELKL 333 (361)
Q Consensus 316 tiiDD~yD~yGTleEL~~ 333 (361)
.++||++|.++|+.+...
T Consensus 92 liVDDvi~tG~Tl~~~~~ 109 (125)
T PF00156_consen 92 LIVDDVIDTGGTLKEAIE 109 (125)
T ss_dssp EEEEEEESSSHHHHHHHH
T ss_pred EEEeeeEcccHHHHHHHH
Confidence 467888888888666543
No 14
>PF14164 YqzH: YqzH-like protein
Probab=21.86 E-value=43 Score=26.16 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=15.6
Q ss_pred HHHhhhcCccccccccccc
Q 018074 129 FRLLRQHGYKVSADIFKKF 147 (361)
Q Consensus 129 FRLLRqhGy~VSsDvF~~F 147 (361)
=+-|||+||++.++.+...
T Consensus 11 ~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 11 INCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHhCCcccCCCCCHH
Confidence 3679999999999877654
No 15
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=21.55 E-value=19 Score=32.74 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.9
Q ss_pred HHhhhhhccccCCHHHHHH
Q 018074 315 ASVIDDIYDVYGTLEELKL 333 (361)
Q Consensus 315 itiiDD~yD~yGTleEL~~ 333 (361)
|.++||+|.++.|+.|+..
T Consensus 155 vllvDDV~TTGaTl~~~~~ 173 (190)
T TIGR00201 155 IVLVDDVVTTGATLHEIAR 173 (190)
T ss_pred EEEEeeeeccHHHHHHHHH
Confidence 4568999999999998754
No 16
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.35 E-value=7.8e+02 Score=24.14 Aligned_cols=139 Identities=19% Similarity=0.167 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCCCCCCchhhHHHHHHHh
Q 018074 53 ETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLL 132 (361)
Q Consensus 53 e~LkeeVk~ml~~~~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~~~~~~~~~~~~DL~~~AL~FRLL 132 (361)
..-|..+++.|.. .++.....+-+--.-|++|---+=.++-..+|..--+
T Consensus 52 ~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--------------------------- 101 (250)
T COG3063 52 AQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--------------------------- 101 (250)
T ss_pred HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---------------------------
Confidence 3456677777876 5778888888888888888655554443333321110
Q ss_pred hhcCccccccccccccccccccccccchhhHHHHHHHhhhhccCCCch--HHHHHHHHHH---------HHHHhHhhcC-
Q 018074 133 RQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGEN--ILEEACEFSR---------KHLKSLLSHL- 200 (361)
Q Consensus 133 RqhGy~VSsDvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~--iLdeA~~Ft~---------~~L~~~~~~~- 200 (361)
+-||+|+| |-|-|+...=..+|--+=+|..--.-||. .++.+.-++- .+|+..+...
T Consensus 102 -------~GdVLNNY----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 102 -------NGDVLNNY----GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred -------ccchhhhh----hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 13577777 77777666667777777778766555653 5666555443 4555555422
Q ss_pred --CCchHHHHHHhccCCccCCcchhHHhhhHHhhhcCCc
Q 018074 201 --STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNS 237 (361)
Q Consensus 201 --~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~ 237 (361)
++.+. .+-.+.+..=.+..||.|++.|.+...
T Consensus 171 ~~~~~~l-----~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 171 QFPPALL-----ELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred CCChHHH-----HHHHHHHhcccchHHHHHHHHHHhccc
Confidence 22222 223333445567899999999998765
No 17
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.55 E-value=71 Score=30.33 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhCCCCcCccccchhhHHHHHhhccccCCCChh------hhHHHHHHHHHHHhh
Q 018074 259 RIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYST------TRKFMTKIIAIASVI 318 (361)
Q Consensus 259 q~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfwa~~~~fEPq~s~------~R~~~tK~~~litii 318 (361)
++|+..|.+||++.|-. ++=...-++|.+|.=+|-. .+-.-.+.-.+++.+
T Consensus 8 ~qql~~ik~wwkeNGk~---------li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~ 64 (207)
T COG2976 8 QQQLEAIKDWWKENGKA---------LIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAV 64 (207)
T ss_pred HHHHHHHHHHHHHCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999952 2334455566666655543 334444555555544
No 18
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.23 E-value=21 Score=33.57 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=15.8
Q ss_pred HHhhhhhccccCCHHHHHH
Q 018074 315 ASVIDDIYDVYGTLEELKL 333 (361)
Q Consensus 315 itiiDD~yD~yGTleEL~~ 333 (361)
+.+|||++|++.|+.++..
T Consensus 190 vllvDDv~tTG~Tl~~~~~ 208 (227)
T PRK11595 190 MAIVDDVVTTGSTVAEIAQ 208 (227)
T ss_pred EEEEeeeecchHHHHHHHH
Confidence 4568999999999888753
Done!