BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018077
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 173/339 (51%), Gaps = 27/339 (7%)
Query: 25 VKGLSEMGLKALPKQYIQPLEER------FSEKKIVPHESIPIIDMSKWD-DPEVAKSIC 77
V+ L++ G+ ++PK+YI+P EE F E+K +P ID+ + D E + C
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 78 -----DAAEMWGFFQVVNHRVPLQVLDRVKAATHRFFGLSAAEKNKYSKELSPSNNVRFG 132
A+ WG ++NH +P +++RVK A FF LS EK KY+ + + +G
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 133 TSFNTQAEKALEWKDY-LSLFYVSDDEASALWPPACKDEV---LEYTKSSEVLIKQLLKV 188
+ A LEW+DY L Y + ++WP D + EY K +L ++ K
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 189 LMKGLKVEGTDEAKE--ALLMGSVRTNLNYYPICPNPELTVGVGRHSDVSTLTILLQDDI 246
L GL +E KE L ++ +NYYP CP PEL +GV H+DVS LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 247 GG--LYVRGNDGESWIHVPPISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVP 304
G L+ G W+ + S+V++IGD L+I+SNGKY+S+ H + N RIS
Sbjct: 247 PGLQLFYEGK----WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 305 IFINPRPQDTI--GPFPEVLASGEKPVYKQVLYKDYVKH 341
+F P P+D I P PE+++ + + +++H
Sbjct: 303 VFCEP-PKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 340
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 173/339 (51%), Gaps = 27/339 (7%)
Query: 25 VKGLSEMGLKALPKQYIQPLEER------FSEKKIVPHESIPIIDMSKWD-DPEVAKSIC 77
V+ L++ G+ ++PK+YI+P EE F E+K +P ID+ + D E + C
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 78 -----DAAEMWGFFQVVNHRVPLQVLDRVKAATHRFFGLSAAEKNKYSKELSPSNNVRFG 132
A+ WG ++NH +P +++RVK A FF LS EK KY+ + + +G
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 133 TSFNTQAEKALEWKDY-LSLFYVSDDEASALWPPACKDEV---LEYTKSSEVLIKQLLKV 188
+ A LEW+DY L Y + ++WP D + EY K +L ++ K
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 189 LMKGLKVEGTDEAKE--ALLMGSVRTNLNYYPICPNPELTVGVGRHSDVSTLTILLQDDI 246
L GL +E KE L ++ +NYYP CP PEL +GV H+DVS LT +L + +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245
Query: 247 GG--LYVRGNDGESWIHVPPISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVP 304
G L+ G W+ + S+V++IGD L+I+SNGKY+S+ H + N RIS
Sbjct: 246 PGLQLFYEGK----WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 301
Query: 305 IFINPRPQDTI--GPFPEVLASGEKPVYKQVLYKDYVKH 341
+F P P+D I P PE+++ + + +++H
Sbjct: 302 VFCEP-PKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 170/339 (50%), Gaps = 27/339 (7%)
Query: 25 VKGLSEMGLKALPKQYIQPLEER------FSEKKIVPHESIPIIDMSKWD-DPEVAKSIC 77
V+ L++ G+ ++PK+YI+P EE F E+K +P ID+ + D E + C
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 78 -----DAAEMWGFFQVVNHRVPLQVLDRVKAATHRFFGLSAAEKNKYSKELSPSNNVRFG 132
A+ WG ++NH +P + +RVK A FF LS EK KY+ + + +G
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 133 TSFNTQAEKALEWKDY-LSLFYVSDDEASALWPPACKDEV---LEYTKSSEVLIKQLLKV 188
+ A LEW+DY L Y + ++WP D + EY K +L ++ K
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 189 LMKGLKVEGTDEAKE--ALLMGSVRTNLNYYPICPNPELTVGVGRHSDVSTLTILLQDDI 246
L GL +E KE L ++ +NYYP CP PEL +GV H+DVS LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXV 246
Query: 247 GG--LYVRGNDGESWIHVPPISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVP 304
G L+ G W+ + S+V +IGD L+I+SNGKY+S+ H + N RIS
Sbjct: 247 PGLQLFYEGK----WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 305 IFINPRPQDTI--GPFPEVLASGEKPVYKQVLYKDYVKH 341
+F P P+D I P PE ++ + + +++H
Sbjct: 303 VFCEP-PKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 28/301 (9%)
Query: 57 ESIPIIDMSKWDDPEVAKS---ICDAAEMWGFFQVVNHRVPLQVLDRVKAATHRFFGLSA 113
E+ PII + K + E A + I DA E WGFF++VNH +P +V D V+ T +
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 114 AEKNKYSKELSPSNNVRFGTSFNTQAE-KALEWKDYLSLFYVSDDEASALWPPACKDEVL 172
++ KEL S + QAE +W+ L ++ S + P +E
Sbjct: 62 EQR---FKELVASKALE-----GVQAEVTDXDWESTFFLKHLPISNISEV--PDLDEEYR 111
Query: 173 E----YTKSSEVLIKQLLKVLMKGLKVEGTDEAKEALLMG---SVRTNLNYYPICPNPEL 225
E + K E L ++LL +L + L +E K A + T ++ YP CP P+L
Sbjct: 112 EVXRDFAKRLEKLAEELLDLLCENLGLE-KGYLKNAFYGSKGPNFGTKVSNYPPCPKPDL 170
Query: 226 TVGVGRHSDVSTLTILLQDD-IGGLYVRGNDGESWIHVPPISGSLVINIGDALQIMSNGK 284
G+ H+D + +L QDD + GL + DG+ WI VPP S+V+N+GD L++++NGK
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGQ-WIDVPPXRHSIVVNLGDQLEVITNGK 228
Query: 285 YRSVEHCVIANGSSNRISVPIFINPRPQDTIGPFPEVL---ASGEKPVYKQVLYKDYVKH 341
Y+SV H VIA R S+ F NP I P P ++ A K VY + ++ DY K
Sbjct: 229 YKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
Query: 342 F 342
+
Sbjct: 289 Y 289
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 19/250 (7%)
Query: 73 AKSICDAAEMWGFFQVVNHRVPLQVLDRVKAATHRFFGLSAAEKNKYSKELSPSNNVRFG 132
A+ + + E +GF + ++ + +D + FF L K +Y+ R
Sbjct: 23 AQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYA---GVKGGARGY 79
Query: 133 TSFNTQAEKALEWKDYLSLFYVSDD----------EASALWP---PACKDEVLEYTKSSE 179
F + K + D ++ D A +WP PA K +V S +
Sbjct: 80 IPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLD 139
Query: 180 VLIKQLLKVLMKGLKVEGTDEAKEALLMGSVRTNLNYYPICPNPELTVGVGRHSDVSTLT 239
++L+ + LK+E D K + G+ L +YP P V G H D++T+T
Sbjct: 140 GXGGKVLEAIATYLKLE-RDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTIT 198
Query: 240 ILLQDDIGGLYVRGNDGESWIHVPPISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSN 299
+LL + GGL V DG+ W+ + P G LVINIGD L+ ++N S H V+ N
Sbjct: 199 LLLGAEEGGLEVLDRDGQ-WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPE 256
Query: 300 RISVPIFINP 309
R VP + P
Sbjct: 257 RRGVPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 33/257 (12%)
Query: 73 AKSICDAAEMWGFFQVVNHRVPLQVLDRVKAATHRFFGLSAAEKNKYSKELSPSNNVRFG 132
AK ++ GF + NH + ++++R+ FF A + +++E +++ F
Sbjct: 15 AKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRE---THDGFFP 71
Query: 133 TSFNTQAEKALEWKDYLSLFYVSDDEASALW---PPACKDEVLEYTKSSEVLIKQLLKVL 189
S + A K KD ++V W P + + +L Y + + L +LL+
Sbjct: 72 ASISETA-KGHTVKDIKEYYHVYP------WGRIPDSLRANILAYYEKANTLASELLE-- 122
Query: 190 MKGLKVEGTDEAKEAL-------LMGSVRT---NLNYYPICPNPEL-TVGVGRHSDVSTL 238
++ DE K + S +T L+Y P + E + H D++ +
Sbjct: 123 --WIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLI 180
Query: 239 TILLQDDIGGLYVRGNDGESWIHVPPISGSLVINIGDALQIMSNGKYRSVEHCVI----A 294
T+L + GL V+ DG SW+ VP G+++INIGD LQ S+G + S H VI
Sbjct: 181 TVLPTANEPGLQVKAKDG-SWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGT 239
Query: 295 NGSSNRISVPIFINPRP 311
+ + +RIS+P+F++P P
Sbjct: 240 DKTKSRISLPLFLHPHP 256
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 128/326 (39%), Gaps = 48/326 (14%)
Query: 54 VPHESIPIIDMSKW--DDP----EVAKSICDAAEMWGFFQVVNHRVPLQVLDRVKAATHR 107
V ++P ID+S DD VA+ I A+ GFF VNH + +Q L + H
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH- 62
Query: 108 FFGLSAAEK-----NKYSKELSPSNNVRFGTSFNTQAEKALEWKDYLSLFYVSDD----- 157
++ EK Y+KE + VR G + +KA+E YL+ + D
Sbjct: 63 -MSITPEEKWDLAIRAYNKEH--QDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 158 ----EASALWP-----PACKDEVLEYTKSSEVLIKQLLKVLMKGLKVEGTDEAK----EA 204
+WP P +D +Y L LLK L E A+ +
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 205 LLMGSVRTNLNYYPICPNPELTVGVGR---------HSDVSTLTILLQDDIGGLYVRGND 255
L V Y + P PE + H DVS +T+L Q ++ L V
Sbjct: 180 TLASVVLIRYPY--LDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 256 GESWIHVPPISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVPIFINPRPQDTI 315
G + + +IN G + ++N Y++ H V ++ R S+P F+N I
Sbjct: 238 G--YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV-KWVNAERQSLPFFVNLGYDSVI 294
Query: 316 GPFPEVLASGEKPVYKQVLYKDYVKH 341
PF +G K + + Y DY+++
Sbjct: 295 DPFDPREPNG-KSDREPLSYGDYLQN 319
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 128/326 (39%), Gaps = 48/326 (14%)
Query: 54 VPHESIPIIDMSKW--DDP----EVAKSICDAAEMWGFFQVVNHRVPLQVLDRVKAATHR 107
V ++P ID+S DD VA+ I A+ GFF VNH + +Q L + H
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH- 62
Query: 108 FFGLSAAEK-----NKYSKELSPSNNVRFGTSFNTQAEKALEWKDYLSLFYVSDD----- 157
++ EK Y+KE + VR G + +KA+E YL+ + D
Sbjct: 63 -MSITPEEKWDLAIRAYNKEH--QDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 158 ----EASALWP-----PACKDEVLEYTKSSEVLIKQLLKVLMKGLKVEGTDEAK----EA 204
+WP P +D +Y L LLK L E A+ +
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 205 LLMGSVRTNLNYYPICPNPELTVGVGR---------HSDVSTLTILLQDDIGGLYVRGND 255
L V Y + P PE + H DVS +T+L Q ++ L V
Sbjct: 180 TLASVVLIRYPY--LDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 256 GESWIHVPPISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVPIFINPRPQDTI 315
G + + +IN G + ++N Y++ H V ++ R S+P F+N I
Sbjct: 238 G--YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV-KWVNAERQSLPFFVNLGYDSVI 294
Query: 316 GPFPEVLASGEKPVYKQVLYKDYVKH 341
PF +G K + + Y DY+++
Sbjct: 295 DPFDPREPNG-KSDREPLSYGDYLQN 319
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 265 ISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVPIFINP 309
I+G+LV+NIG SVE +IA S+N VP+ ++P
Sbjct: 58 IAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 95
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 265 ISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVPIFINP 309
I+G+LV+NIG SVE +IA S+N VP+ ++P
Sbjct: 70 IAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 107
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 265 ISGSLVINIGDALQIMSNGKYRSVEHCVIANGSSNRISVPIFINP 309
I+G+LV+NIG SVE +IA S+N VP+ ++P
Sbjct: 70 IAGALVLNIGTL-------SKESVEAMIIAGKSANEHGVPVILDP 107
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 36/131 (27%)
Query: 50 EKKIVPHESIPIIDMS--------KWDDPEVAKSICDAAEMWGFFQ----VVNHRVPLQV 97
+K + P E IP+ + K D EV KS+ D A GFFQ + H P +
Sbjct: 204 KKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKT 263
Query: 98 LDRVKAATHRFFGLSAAEKNK----YSKELSPSNNVRFGTSFNTQAEKALEWKDYLSLFY 153
L+ K LS+ K +++E+ N R+G AE+ LF
Sbjct: 264 LEETKTE------LSSTAKRSIESPWNEEIVFDNETRYGF-----AEE---------LFL 303
Query: 154 VSDDEASALWP 164
+D+ A WP
Sbjct: 304 PKEDDIPANWP 314
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 278 QIMSNGKYRSVEHCVIANGSSNRISVPIFINPRPQDTIGPFPEVLASGEKPVY 330
+I GK +H N +N V +F+N Q T+ FP+ + E PV+
Sbjct: 346 EIFPKGKLSGEQHIPFINAIANNKRVRLFLNVENQGTLKDFPDDVVX-ELPVW 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,087,668
Number of Sequences: 62578
Number of extensions: 467593
Number of successful extensions: 1212
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 14
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)