BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018079
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 20/122 (16%)
Query: 221 SLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFF 280
+++ G+ EL + + E +++ + N L+ALP + + L+ L I
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTL----------ARNPLRALPASIASLNRLRELSIRA 159
Query: 281 CENMEELPILEDHRTTD-------IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGC 333
C + ELP E +TD + L SLR+ + ++ LP + L+ L I
Sbjct: 160 CPELTELP--EPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS 216
Query: 334 PL 335
PL
Sbjct: 217 PL 218
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 156 LNLSLCFNCEHLPQLGKLPLEKLQLKNLKSV 186
++L+LC NC H P L L L K LK+L++V
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate
Reductase, The Terminal Enzyme Of The Non-mevalonate
Pathway
pdb|3DNF|B Chain B, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate
Reductase, The Terminal Enzyme Of The Non-mevalonate
Pathway
Length = 297
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 19 ISKLTSLRR---------LDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQ 69
I TSLR+ +D ++ GG + NT RL S E N H++ AE LQ
Sbjct: 192 ICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYY---ISKELNPNTYHIETAEELQ 248
Query: 70 LSNKKNLLRLHLQFGGKDEDW 90
+ + R+ + G DW
Sbjct: 249 PEWFRGVKRVGISAGASTPDW 269
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 151 ANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVG 190
A+L ELN SLC+ LP G L + ++ NLK++ G
Sbjct: 137 ADLGELNFSLCY----LPTAGLLTVTIIKASNLKAMDLTG 172
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 151 ANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVG 190
A+L ELN SLC+ LP G L + ++ NLK++ G
Sbjct: 136 ADLGELNFSLCY----LPTAGLLTVTIIKASNLKAMDLTG 171
>pdb|3U0A|A Chain A, Crystal Structure Of An Acyl-Coa Thioesterase Ii Tesb2
From Mycobacterium Marinum
pdb|3U0A|B Chain B, Crystal Structure Of An Acyl-Coa Thioesterase Ii Tesb2
From Mycobacterium Marinum
Length = 285
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----------YL 267
++ + G ++ EEW+ RI ++ ++ +P +S + LPD Y+
Sbjct: 137 SVRVFDDAGFRQFEEWDVRIVPRDLLAPLPGKASQQQVWFRHRDPLPDDPVLHICALAYM 196
Query: 268 LQMTVLQNLRIFFCENMEELPILE-DH 293
+T+L + ++ E L + DH
Sbjct: 197 SDLTLLGSAQVTHLAEREHLQVASLDH 223
>pdb|2Y1I|A Chain A, Crystal Structure Of A S-Diastereomer Analogue Of The
Spore Photoproduct In Complex With Fragment Dna
Polymerase I From Bacillus Stearothermophilus
pdb|2Y1J|A Chain A, Crystal Structure Of A R-Diastereomer Analogue Of The
Spore Photoproduct In Complex With Fragment Dna
Polymerase I From Bacillus Stearothermophilus
Length = 580
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 112 RKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLA-----NLRELNLSLC----- 161
R+NE+D+ L+E L+ PL+ + F G + K L + LR + +
Sbjct: 170 RRNEQDRLLVE-LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLRTVEQRIYELAGQ 228
Query: 162 -FNCEHLPQLGKLPLEKLQLKNLKSVK 187
FN QLG + EKLQL LK K
Sbjct: 229 EFNINSPKQLGVILFEKLQLPVLKKTK 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,740,753
Number of Sequences: 62578
Number of extensions: 350406
Number of successful extensions: 720
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 37
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)