Query 018079
Match_columns 361
No_of_seqs 173 out of 1488
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 4.6E-20 1E-24 193.4 14.4 178 1-183 166-366 (968)
2 PLN03210 Resistant to P. syrin 99.8 1.8E-19 4E-24 190.2 17.5 116 216-338 777-908 (1153)
3 PLN00113 leucine-rich repeat r 99.8 1.6E-19 3.4E-24 189.4 14.6 315 1-334 95-439 (968)
4 PLN03210 Resistant to P. syrin 99.8 1.8E-17 3.9E-22 175.2 16.8 286 1-337 613-944 (1153)
5 KOG4194 Membrane glycoprotein 99.7 4.1E-19 8.8E-24 164.8 2.5 311 2-337 81-430 (873)
6 KOG0472 Leucine-rich repeat pr 99.7 6E-19 1.3E-23 157.1 -1.9 318 2-336 117-541 (565)
7 KOG0444 Cytoskeletal regulator 99.6 3.7E-18 8.1E-23 159.7 -4.5 209 117-337 115-376 (1255)
8 KOG0618 Serine/threonine phosp 99.6 1.6E-16 3.4E-21 154.8 -2.3 212 128-359 241-507 (1081)
9 KOG4194 Membrane glycoprotein 99.5 2.9E-15 6.3E-20 139.5 -0.7 57 270-331 391-447 (873)
10 KOG0472 Leucine-rich repeat pr 99.5 3.7E-16 8.1E-21 139.4 -8.7 235 1-281 70-307 (565)
11 PRK15387 E3 ubiquitin-protein 99.4 1E-12 2.3E-17 131.0 13.9 77 246-335 381-457 (788)
12 KOG0444 Cytoskeletal regulator 99.4 1.8E-15 4E-20 141.9 -7.1 236 3-284 130-375 (1255)
13 KOG4341 F-box protein containi 99.3 1.8E-13 3.9E-18 123.0 -2.0 301 1-359 140-456 (483)
14 KOG4658 Apoptotic ATPase [Sign 99.2 1.6E-11 3.4E-16 125.0 4.9 214 1-274 573-797 (889)
15 KOG0617 Ras suppressor protein 99.2 3.9E-13 8.4E-18 107.2 -6.1 182 122-337 27-213 (264)
16 PRK15370 E3 ubiquitin-protein 99.2 4.4E-11 9.5E-16 119.9 6.7 159 129-335 263-427 (754)
17 PRK15387 E3 ubiquitin-protein 99.1 4.4E-10 9.5E-15 112.4 10.2 250 3-317 205-463 (788)
18 PRK15370 E3 ubiquitin-protein 99.0 6.1E-10 1.3E-14 111.8 7.4 157 128-334 241-399 (754)
19 KOG0618 Serine/threonine phosp 99.0 1.3E-11 2.9E-16 120.9 -5.0 36 298-334 382-418 (1081)
20 cd00116 LRR_RI Leucine-rich re 98.8 2.2E-09 4.8E-14 98.4 4.4 200 117-338 70-293 (319)
21 KOG4341 F-box protein containi 98.8 2.6E-10 5.6E-15 103.0 -1.9 254 50-339 142-417 (483)
22 KOG0617 Ras suppressor protein 98.8 1.8E-10 4E-15 92.1 -3.0 153 3-169 37-190 (264)
23 cd00116 LRR_RI Leucine-rich re 98.7 1.5E-08 3.2E-13 92.9 5.9 221 65-334 72-318 (319)
24 KOG4658 Apoptotic ATPase [Sign 98.7 2.1E-08 4.5E-13 102.5 5.4 176 1-235 597-788 (889)
25 KOG2120 SCF ubiquitin ligase, 98.6 3.1E-09 6.7E-14 92.3 -3.3 166 121-311 203-375 (419)
26 KOG4237 Extracellular matrix p 98.5 3.5E-09 7.5E-14 95.2 -3.9 28 3-31 71-99 (498)
27 KOG2120 SCF ubiquitin ligase, 98.5 8.6E-09 1.9E-13 89.6 -2.2 160 68-281 204-373 (419)
28 KOG3207 Beta-tubulin folding c 98.5 2.9E-08 6.4E-13 90.4 0.3 182 122-334 140-337 (505)
29 KOG4237 Extracellular matrix p 98.4 2.5E-08 5.5E-13 89.8 -3.1 243 1-279 93-354 (498)
30 PF14580 LRR_9: Leucine-rich r 98.3 2.7E-07 5.8E-12 76.2 2.5 127 126-280 17-149 (175)
31 KOG1259 Nischarin, modulator o 98.3 3.4E-07 7.3E-12 79.9 2.5 196 126-335 180-411 (490)
32 PF14580 LRR_9: Leucine-rich r 98.2 1E-06 2.2E-11 72.9 3.4 108 215-334 40-151 (175)
33 PRK15386 type III secretion pr 98.1 2.3E-05 5E-10 72.8 10.8 64 122-190 46-111 (426)
34 KOG0532 Leucine-rich repeat (L 98.1 9E-08 2E-12 90.0 -5.5 179 118-333 88-270 (722)
35 KOG3207 Beta-tubulin folding c 98.0 1.7E-06 3.6E-11 79.2 1.5 24 65-88 163-186 (505)
36 PRK15386 type III secretion pr 98.0 9.4E-06 2E-10 75.4 6.2 68 215-294 50-118 (426)
37 KOG0532 Leucine-rich repeat (L 98.0 2.2E-07 4.7E-12 87.5 -4.6 170 4-234 80-250 (722)
38 COG4886 Leucine-rich repeat (L 97.9 1E-05 2.2E-10 76.6 4.1 174 124-334 112-288 (394)
39 KOG2982 Uncharacterized conser 97.8 1.6E-05 3.4E-10 69.6 3.6 205 71-329 68-285 (418)
40 KOG1909 Ran GTPase-activating 97.8 1.2E-05 2.6E-10 71.7 2.5 195 120-335 84-310 (382)
41 COG4886 Leucine-rich repeat (L 97.8 3.2E-05 7E-10 73.2 5.2 46 123-169 158-203 (394)
42 PF13855 LRR_8: Leucine rich r 97.7 6E-05 1.3E-09 50.8 4.4 39 295-334 21-60 (61)
43 KOG1947 Leucine rich repeat pr 97.7 1.1E-05 2.3E-10 78.2 0.9 94 121-232 207-310 (482)
44 KOG1259 Nischarin, modulator o 97.6 8E-06 1.7E-10 71.5 -0.8 22 15-36 206-227 (490)
45 KOG1859 Leucine-rich repeat pr 97.5 1.6E-06 3.4E-11 84.1 -7.3 199 117-335 76-291 (1096)
46 PF13855 LRR_8: Leucine rich r 97.5 0.00013 2.8E-09 49.2 4.0 58 217-281 1-59 (61)
47 KOG1947 Leucine rich repeat pr 97.5 1.5E-05 3.2E-10 77.3 -0.9 163 126-310 186-373 (482)
48 KOG1859 Leucine-rich repeat pr 97.4 1.8E-06 3.8E-11 83.7 -8.4 133 16-182 102-241 (1096)
49 KOG1909 Ran GTPase-activating 97.4 7.3E-05 1.6E-09 66.9 2.1 198 67-311 85-310 (382)
50 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.4E-09 73.8 3.3 110 215-334 146-261 (699)
51 PLN03150 hypothetical protein; 97.3 0.00061 1.3E-08 68.3 7.2 108 219-336 420-528 (623)
52 PF12799 LRR_4: Leucine Rich r 97.2 0.00024 5.2E-09 44.3 2.2 37 1-45 3-39 (44)
53 PF12799 LRR_4: Leucine Rich r 97.1 0.0006 1.3E-08 42.5 3.4 41 128-169 1-41 (44)
54 KOG1644 U2-associated snRNP A' 97.1 0.0018 3.9E-08 53.9 6.6 122 131-280 22-149 (233)
55 KOG0531 Protein phosphatase 1, 97.1 9.9E-05 2.2E-09 70.3 -1.0 111 117-256 84-195 (414)
56 PLN03150 hypothetical protein; 96.9 0.0015 3.3E-08 65.5 5.7 82 249-334 420-501 (623)
57 KOG3665 ZYG-1-like serine/thre 96.8 0.00091 2E-08 67.3 3.7 58 125-183 145-205 (699)
58 KOG2982 Uncharacterized conser 96.7 0.0013 2.9E-08 57.9 3.3 166 64-285 87-263 (418)
59 KOG0531 Protein phosphatase 1, 96.0 0.002 4.2E-08 61.5 0.1 115 5-182 78-195 (414)
60 PF00560 LRR_1: Leucine Rich R 95.5 0.0052 1.1E-07 31.9 0.7 21 1-22 2-22 (22)
61 KOG2123 Uncharacterized conser 95.1 0.0014 2.9E-08 57.3 -3.7 103 216-331 18-125 (388)
62 KOG3864 Uncharacterized conser 95.0 0.0065 1.4E-07 50.6 0.0 67 213-283 121-188 (221)
63 COG5238 RNA1 Ran GTPase-activa 94.8 0.038 8.3E-07 48.4 4.0 50 117-167 81-135 (388)
64 KOG3864 Uncharacterized conser 94.7 0.0033 7.1E-08 52.4 -2.5 44 242-285 120-165 (221)
65 KOG1644 U2-associated snRNP A' 94.6 0.056 1.2E-06 45.2 4.4 91 121-228 57-151 (233)
66 KOG2123 Uncharacterized conser 94.5 0.0015 3.3E-08 57.0 -5.0 105 127-253 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 93.8 0.028 6E-07 48.8 1.3 14 215-228 114-127 (260)
68 PF00560 LRR_1: Leucine Rich R 93.5 0.037 8.1E-07 28.6 1.0 21 300-321 1-21 (22)
69 COG5238 RNA1 Ran GTPase-activa 93.1 0.063 1.4E-06 47.1 2.2 200 117-334 19-253 (388)
70 KOG4579 Leucine-rich repeat (L 92.8 0.037 8E-07 43.5 0.4 65 67-161 46-110 (177)
71 PF13504 LRR_7: Leucine rich r 91.4 0.15 3.2E-06 24.5 1.5 10 300-309 2-11 (17)
72 KOG4579 Leucine-rich repeat (L 91.3 0.028 6.1E-07 44.1 -1.7 73 118-192 43-118 (177)
73 KOG2739 Leucine-rich acidic nu 91.0 0.091 2E-06 45.7 0.8 109 215-335 41-155 (260)
74 PF13306 LRR_5: Leucine rich r 86.3 4.4 9.5E-05 31.1 7.5 103 213-332 8-112 (129)
75 smart00367 LRR_CC Leucine-rich 85.7 0.43 9.4E-06 25.6 1.0 18 322-339 1-18 (26)
76 PF13306 LRR_5: Leucine rich r 82.9 4.7 0.0001 30.9 6.3 83 241-332 6-90 (129)
77 smart00370 LRR Leucine-rich re 68.9 4.8 0.0001 21.3 1.9 20 128-147 2-21 (26)
78 smart00369 LRR_TYP Leucine-ric 68.9 4.8 0.0001 21.3 1.9 20 128-147 2-21 (26)
79 smart00364 LRR_BAC Leucine-ric 59.0 6 0.00013 21.3 1.1 16 1-17 4-19 (26)
80 PF13516 LRR_6: Leucine Rich r 45.9 14 0.00031 19.0 1.3 13 322-334 1-13 (24)
81 KOG3763 mRNA export factor TAP 21.5 50 0.0011 32.4 1.3 68 244-315 215-286 (585)
82 smart00368 LRR_RI Leucine rich 20.6 65 0.0014 17.3 1.2 11 1-12 4-14 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=4.6e-20 Score=193.38 Aligned_cols=178 Identities=19% Similarity=0.086 Sum_probs=82.0
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR 78 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~ 78 (361)
|++|++++|.....+|..++++++|++|++.++.... ....+..+. |+ .+.+.... .....+..++++++|++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNN----LSGEIPYEIGGLTSLNH 240 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCc----cCCcCChhHhcCCCCCE
Confidence 6788888883334678888888888888886554321 111222222 22 22222110 01112223445555555
Q ss_pred EEEEecCCCCCCcchhhhhhcccccccccccccc------------------cchhhHHHHHhcCCCCCccEEEecccCC
Q 018079 79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRR------------------KNEKDKQLLEALQPPLNVEELWIIFYGG 140 (361)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 140 (361)
|+++.|........++...++++.|++..+.... .+.....++..+..+++|++|++.+|..
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 5555444332223333444444444444332000 0000112233344445555555555443
Q ss_pred CC-CchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEecccc
Q 018079 141 NI-FPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNL 183 (361)
Q Consensus 141 ~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~ 183 (361)
.. .|.++..+++|+.|++++|.-...+|. ++.++ |+.|+++++
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 32 444455555555555555433333443 44555 666666554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.8e-19 Score=190.23 Aligned_cols=116 Identities=22% Similarity=0.403 Sum_probs=98.3
Q ss_pred CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCC----ccc
Q 018079 216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP----ILE 291 (361)
Q Consensus 216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp----~L~ 291 (361)
+++|+.|+++++..+..++. .++.+++|+.|++.+|+.++.+|..+ .+++|+.|++++|..++.+| +|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~------si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~ 849 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPS------SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNIS 849 (1153)
T ss_pred cccchheeCCCCCCccccCh------hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccC
Confidence 46788888888877777765 46689999999999999999998766 68999999999998888776 566
Q ss_pred ccccCC------------CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccchh
Q 018079 292 DHRTTD------------IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLEN 338 (361)
Q Consensus 292 ~L~l~~------------l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~ 338 (361)
.|++++ +++|+.|++.+|++++.+|..+..+++|+.+++++|+++..
T Consensus 850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 666654 78899999999999999998888999999999999998864
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.6e-19 Score=189.40 Aligned_cols=315 Identities=17% Similarity=0.074 Sum_probs=171.4
Q ss_pred CceeecCCCCccc-ccCccCC-CccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLK-YMPIGIS-KLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~-~lP~~i~-~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
|++|++++| .+. .+|.++. .+++|++|++.++.... ......++ |+ .+.+.+. ......+..++++++|+
T Consensus 95 L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~l~~L~-~L~Ls~n----~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 95 IQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGSIPNLE-TLDLSNN----MLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCcccc-ccCccccCCCC-EEECcCC----cccccCChHHhcCCCCC
Confidence 456666666 433 5565533 66666666664333221 00001111 22 3332221 11112334467788888
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC-CCchhhhcCccCCee
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKWLTSLANLREL 156 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L 156 (361)
.|+++.|.........+...++++.|++..+.. ...++..+..+++|++|++++|... .+|.+++.+++|+.|
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCC------cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 888887765444445566777777777776531 2234566677778888888777654 367777778888888
Q ss_pred eecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCC----CCCcccCCCCccEEEEcCCccc
Q 018079 157 NLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSS----SSPSVIAFPKLKSLEIDGMKEL 230 (361)
Q Consensus 157 ~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~l 230 (361)
++++|.....+|. ++.++ |+.|+++++.-...++..+.....+..+.++... ....+..+++|+.|++.++.-.
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 8877644445554 67777 8888777654322333333322222222222111 1112345566666666554322
Q ss_pred hhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCccc-------CCcccccccC-------
Q 018079 231 EEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEE-------LPILEDHRTT------- 296 (361)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-------lp~L~~L~l~------- 296 (361)
...+ ..+..+++|+.|++++|.....+|..+..+++|+.|+++++.--.. +++|+.+++.
T Consensus 322 ~~~~------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 322 GKIP------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred CcCC------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 2222 1344566777777766543345666666677777777766432222 2233433332
Q ss_pred ------CCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 297 ------DIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 297 ------~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
++++|+.|++.+|.....+|..+..+++|+.+++++|.
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 25667777777665444566666677777777777664
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=1.8e-17 Score=175.20 Aligned_cols=286 Identities=17% Similarity=0.173 Sum_probs=174.1
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
|++|+++++ .+..+|.++..+++|+++++.++........+..++ |+ .+.+.++..+.. .+..++++++|+.|
T Consensus 613 L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le-~L~L~~c~~L~~----lp~si~~L~~L~~L 686 (1153)
T PLN03210 613 LVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE-TLKLSDCSSLVE----LPSSIQYLNKLEDL 686 (1153)
T ss_pred CcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCccc-EEEecCCCCccc----cchhhhccCCCCEE
Confidence 456777777 677777777777788887775433211112222222 33 555554443322 23346677777777
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhh-----------
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLT----------- 148 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~----------- 148 (361)
+++.|......... ...++++.|++..... ...++. ...+|++|++.++....+|..+.
T Consensus 687 ~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~------L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 687 DMSRCENLEILPTG-INLKSLYRLNLSGCSR------LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred eCCCCCCcCccCCc-CCCCCCCEEeCCCCCC------cccccc---ccCCcCeeecCCCccccccccccccccccccccc
Confidence 77765432211111 1344455555543221 111111 12355666666555444443321
Q ss_pred -------------------cCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCC
Q 018079 149 -------------------SLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS 207 (361)
Q Consensus 149 -------------------~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 207 (361)
..++|+.|++++|+....+|. ++.++ |+.|++++|..++.+|...
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------- 822 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------- 822 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--------------
Confidence 124566677777666666665 66777 7777777777777665421
Q ss_pred CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccC
Q 018079 208 SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEEL 287 (361)
Q Consensus 208 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 287 (361)
.+++|+.|++++|..+..++. ..++|+.|++.+ +.++.+|.++..+++|+.|++++|+.++.+
T Consensus 823 -------~L~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 823 -------NLESLESLDLSGCSRLRTFPD---------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred -------CccccCEEECCCCCccccccc---------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 577888888888877766554 356788888877 467888988889999999999999999888
Q ss_pred CcccccccCCCCCccEEEEecCCCCCcccc-c------------cCCCCCCCeEEEeCCccch
Q 018079 288 PILEDHRTTDIPRLSSLRIGYCPKLKVLPD-C------------LLRTTTLQKLTIWGCPLLE 337 (361)
Q Consensus 288 p~L~~L~l~~l~~L~~L~l~~c~~l~~l~~-~------------l~~l~~L~~L~l~~c~~l~ 337 (361)
|. .+..+++|+.+++.+|..++.++- . ...+|+...+.+.+|.++.
T Consensus 886 ~~----~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 886 SL----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred Cc----ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 74 455678888888888887765431 0 1223444556777777664
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=4.1e-19 Score=164.78 Aligned_cols=311 Identities=16% Similarity=0.184 Sum_probs=204.1
Q ss_pred ceeecCCCCcccccC-ccCCCccccceecceeeecCCCCCcccccc--eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079 2 RSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR 78 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~ 78 (361)
+.|+++++ ++.+.- .+|-++++|+.+++.+.... ...++.... +. .+.+.+ ......-...++-++.|+.
T Consensus 81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~-~L~L~~----N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE-KLDLRH----NLISSVTSEELSALPALRS 153 (873)
T ss_pred eeeecccc-ccccCcHHHHhcCCcceeeeeccchhh-hccccccccccee-EEeeec----cccccccHHHHHhHhhhhh
Confidence 45888888 777764 56888899999988433333 222221111 22 222221 0111122334666778888
Q ss_pred EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCchhhh-cCccCCee
Q 018079 79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLREL 156 (361)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L 156 (361)
|+++.|........++....++..|+++.+. +..+ ...+..+.+|-.|.++.+....+|.... .+++|+.|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-------It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-------ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccc-------ccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 8888888877777778887888888888654 3333 3456677788888999888888877655 48999999
Q ss_pred eecCCCCCCCC--CCCCCCc-cceEeccccccceeeccc-ccccCCCCCCCCCCC----CCCCcccCCCCccEEEEcCCc
Q 018079 157 NLSLCFNCEHL--PQLGKLP-LEKLQLKNLKSVKRVGNE-FLGIEESSEDGPSSS----SSSPSVIAFPKLKSLEIDGMK 228 (361)
Q Consensus 157 ~l~~~~~~~~l--~~l~~l~-L~~L~l~~~~~l~~l~~~-~~~~~~~~~~~~~~~----~~~~~l~~~~~L~~L~L~~~~ 228 (361)
++..+ .++.. -.+..++ |+.|.+.+ +++..+... |++...++.+.+..+ -..+++-++.+|+.|++++ +
T Consensus 227 dLnrN-~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-N 303 (873)
T KOG4194|consen 227 DLNRN-RIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-N 303 (873)
T ss_pred hcccc-ceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-h
Confidence 98875 55533 3377888 99888886 456666554 445555554444422 2333455667777777765 2
Q ss_pred cchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcc--------cCCcccccccCC--
Q 018079 229 ELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENME--------ELPILEDHRTTD-- 297 (361)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~--------~lp~L~~L~l~~-- 297 (361)
.+..+-. .+...+++|+.|+++. +.++++++.- ..+..|++|++++ +.+. .+.+|++|++++
T Consensus 304 aI~rih~-----d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 304 AIQRIHI-----DSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhheeec-----chhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 3332221 2233577788888877 5677776543 3367777777776 3333 244677777766
Q ss_pred --------------CCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCccch
Q 018079 298 --------------IPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPLLE 337 (361)
Q Consensus 298 --------------l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~ 337 (361)
+++|++|++.| ++++.+| ..|..+++|++|++.+++-..
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred EEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCccee
Confidence 89999999998 7899999 788999999999999987543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=6e-19 Score=157.08 Aligned_cols=318 Identities=23% Similarity=0.218 Sum_probs=209.0
Q ss_pred ceeecCCCCcccccCccCCCccccceecceeeecCC----------------CCCcccccc---eeceeEEcCCCCCCCh
Q 018079 2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV----------------DGSNTGRLQ---LRGECSIEGLCNVSHV 62 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~----------------~~~~l~~L~---L~~~l~l~~l~~~~~~ 62 (361)
+.|+++.+ .+.++|++|+.+-.|..++..+..... .++.+.+++ .. .-++.+++-..+.
T Consensus 117 ~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 117 VKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL 194 (565)
T ss_pred hhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence 44555555 556666666666666666552221110 344444444 11 1122233333444
Q ss_pred HHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhc-CCCCCccEEEecccCCC
Q 018079 63 DEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEAL-QPPLNVEELWIIFYGGN 141 (361)
Q Consensus 63 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~ 141 (361)
-+.++..+++|.+|+.|+++.|...+.+ ++.....+..+|..++. ...++.++ ..++++..||++++...
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccH-------HHhhHHHHhcccccceeeeccccccc
Confidence 4666778999999999999999887755 77888888889998886 66665554 48899999999999999
Q ss_pred CCchhhhcCccCCeeeecCCCCCCCCCC-CCCCccceEeccccccceeecccccccCCC----------CCCCCC-----
Q 018079 142 IFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLPLEKLQLKNLKSVKRVGNEFLGIEES----------SEDGPS----- 205 (361)
Q Consensus 142 ~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~L~~L~l~~~~~l~~l~~~~~~~~~~----------~~~~~~----- 205 (361)
++|..+..+++|++|+++++ .+..+|. ++.+.|+.|.+.|.+ ++++..++...++- ..++++
T Consensus 266 e~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred cCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 99999999999999999985 7888887 777768888777643 33333222211110 001111
Q ss_pred -------CCCCCCcccCCCCccEEEEcCCccchhhhhhhc----------------------------------------
Q 018079 206 -------SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT---------------------------------------- 238 (361)
Q Consensus 206 -------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~---------------------------------------- 238 (361)
....++......+.+.|++++ .+++..|.++.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 222333344445566666654 22222221000
Q ss_pred ----cccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCC-------cccccc-------------
Q 018079 239 ----RKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP-------ILEDHR------------- 294 (361)
Q Consensus 239 ----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-------~L~~L~------------- 294 (361)
-...+..+++|..|++++ +-+.++|..++.+..|++|+++. +.++.+| .++.+-
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred ccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHH
Confidence 011234678999999987 56789999999999999999997 3666666 122221
Q ss_pred cCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 295 TTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 295 l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
+.++.+|.+|++.+ +.+..+|.+++++.+|++|+++|+|--
T Consensus 501 l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 23378899999987 688999999999999999999999864
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=3.7e-18 Score=159.68 Aligned_cols=209 Identities=20% Similarity=0.243 Sum_probs=113.2
Q ss_pred hHHHHHhcCCCCCccEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccc----cceee
Q 018079 117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLK----SVKRV 189 (361)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~----~l~~l 189 (361)
..+++..+....++-.|+++++.+.++|..+. ++..|-.|+++.+ .+..+|+ +.++. |++|.+++.+ .+..+
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 55555555555556666666666555555444 4555555555553 4555554 45555 5555555432 01111
Q ss_pred cccccccCCCCCCCCC-CC-CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc
Q 018079 190 GNEFLGIEESSEDGPS-SS-SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL 267 (361)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 267 (361)
|. +.....++.-+.+ +. ....++..+.||..++++. +++...|. .+..+++|+.|++++ +.++.+..+.
T Consensus 194 Ps-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPe------cly~l~~LrrLNLS~-N~iteL~~~~ 264 (1255)
T KOG0444|consen 194 PS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPE------CLYKLRNLRRLNLSG-NKITELNMTE 264 (1255)
T ss_pred cc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchH------HHhhhhhhheeccCc-CceeeeeccH
Confidence 10 0000000000000 00 0001133555666666653 44544443 444667777777777 4666665555
Q ss_pred cCCCCcceEeeccCCCcccCC-------cccccccCC-------------------------------------CCCccE
Q 018079 268 LQMTVLQNLRIFFCENMEELP-------ILEDHRTTD-------------------------------------IPRLSS 303 (361)
Q Consensus 268 ~~l~~L~~L~l~~c~~l~~lp-------~L~~L~l~~-------------------------------------l~~L~~ 303 (361)
+.+.+|++|+++. +.+..+| +|+.|...+ |..|++
T Consensus 265 ~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 265 GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQK 343 (1255)
T ss_pred HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHH
Confidence 5566666666665 3343333 333333322 778888
Q ss_pred EEEecCCCCCccccccCCCCCCCeEEEeCCccch
Q 018079 304 LRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLE 337 (361)
Q Consensus 304 L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 337 (361)
|.+. |+.+-.+|++++-++.|+.|++.++|++.
T Consensus 344 L~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 344 LKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hccc-ccceeechhhhhhcCCcceeeccCCcCcc
Confidence 8886 47788899999999999999999998875
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1.6e-16 Score=154.77 Aligned_cols=212 Identities=24% Similarity=0.392 Sum_probs=149.7
Q ss_pred CCccEEEecccCCCCCchhhhcCccCCeeeecCCC----------------------CCCCCCC-CCCCc-cceEecccc
Q 018079 128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCF----------------------NCEHLPQ-LGKLP-LEKLQLKNL 183 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~----------------------~~~~l~~-l~~l~-L~~L~l~~~ 183 (361)
.+|++++++.+....+|+|++.+.+|+.+....+. .+..+|+ .+.+. |++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~- 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS- 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-
Confidence 46888888888887899999988888888765432 3334455 44477 88888874
Q ss_pred ccceeecccccccCCC----------C--------------------CCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079 184 KSVKRVGNEFLGIEES----------S--------------------EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW 233 (361)
Q Consensus 184 ~~l~~l~~~~~~~~~~----------~--------------------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 233 (361)
+++..+|+.++..-.. . ..+..++.+++.+.+|++|+.|++++ +.+..+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~f 398 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSF 398 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccC
Confidence 4466665443321110 0 01111778999999999999999998 567777
Q ss_pred hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079 234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK 313 (361)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~ 313 (361)
+. ..+..++.|++|++++ ++++.+|..+..+..|++|...+ +.+.++| .+..++.|+.+|++ |++++
T Consensus 399 pa-----s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-----e~~~l~qL~~lDlS-~N~L~ 465 (1081)
T KOG0618|consen 399 PA-----SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-----ELAQLPQLKVLDLS-CNNLS 465 (1081)
T ss_pred CH-----HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-----hhhhcCcceEEecc-cchhh
Confidence 76 4566889999999999 68999999999999999997765 6777888 45667889999997 57776
Q ss_pred ccc-cccCCCCCCCeEEEeCCccchhhccCCCCcccchhccCCceec
Q 018079 314 VLP-DCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKW 359 (361)
Q Consensus 314 ~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~~ 359 (361)
.+- ....-.|+||+|+++|+..+.. ..+.++..+++...+|
T Consensus 466 ~~~l~~~~p~p~LkyLdlSGN~~l~~-----d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 466 EVTLPEALPSPNLKYLDLSGNTRLVF-----DHKTLKVLKSLSQMDI 507 (1081)
T ss_pred hhhhhhhCCCcccceeeccCCccccc-----chhhhHHhhhhhheec
Confidence 643 2222338999999999986432 3444444555444333
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.49 E-value=2.9e-15 Score=139.46 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=36.7
Q ss_pred CCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEe
Q 018079 270 MTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIW 331 (361)
Q Consensus 270 l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~ 331 (361)
+++|..|.+.| ++++++|+ =.++++++|+.|++.++...+--|..|.++ .|++|.+.
T Consensus 391 l~~LrkL~l~g-Nqlk~I~k---rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPK---RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chhhhheeecC-ceeeecch---hhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 55666666655 45555542 144558999999998854433345778877 78888664
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=3.7e-16 Score=139.42 Aligned_cols=235 Identities=19% Similarity=0.152 Sum_probs=162.2
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc--eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR 78 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~ 78 (361)
|.+|++.++ ++.++|++|+++..++.++. ..+++.+++ ......+..+.-..+-....+..++++..+..
T Consensus 70 l~vl~~~~n-~l~~lp~aig~l~~l~~l~v-------s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 70 LTVLNVHDN-KLSQLPAAIGELEALKSLNV-------SHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred eeEEEeccc-hhhhCCHHHHHHHHHHHhhc-------ccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 346777777 77888888888888888888 555665655 11011111111111111112223555666666
Q ss_pred EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeee
Q 018079 79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNL 158 (361)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l 158 (361)
++...|...+.+ ....+...+..+++..++ ..+.++....++.|++++...+.-.++|+.++.+.+|..|++
T Consensus 142 l~~~~N~i~slp-~~~~~~~~l~~l~~~~n~-------l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 142 LDATNNQISSLP-EDMVNLSKLSKLDLEGNK-------LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhccccccccCc-hHHHHHHHHHHhhccccc-------hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence 666666554433 223444455556666555 556655555578899999888887789999999999999999
Q ss_pred cCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079 159 SLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI 237 (361)
Q Consensus 159 ~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~ 237 (361)
..+ .+..+|.++... |+.++++. +.++.++.+. ...+++|.+|++.+ .++++.|.
T Consensus 214 ~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~-------------------~~~L~~l~vLDLRd-Nklke~Pd-- 269 (565)
T KOG0472|consen 214 RRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEH-------------------LKHLNSLLVLDLRD-NKLKEVPD-- 269 (565)
T ss_pred hhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHH-------------------hcccccceeeeccc-cccccCch--
Confidence 884 788888888888 99999885 5577776654 33789999999988 68888876
Q ss_pred ccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079 238 TRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC 281 (361)
Q Consensus 238 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 281 (361)
.+..+.+|++|++++ +.++.+|..++++ .|+.|.+.|.
T Consensus 270 ----e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 270 ----EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ----HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence 555788999999988 5788999999988 8888888764
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=1e-12 Score=130.96 Aligned_cols=77 Identities=29% Similarity=0.376 Sum_probs=57.0
Q ss_pred CCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCC
Q 018079 246 MPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTL 325 (361)
Q Consensus 246 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L 325 (361)
.++|+.|+++++ .++.+|.. .++|+.|+++++ .+..+|.+ ..+|+.|++++ ++++.+|+.+..+++|
T Consensus 381 ~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~LP~sl~~L~~L 447 (788)
T PRK15387 381 PSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLPML-------PSGLLSLSVYR-NQLTRLPESLIHLSSE 447 (788)
T ss_pred ccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCCcc-------hhhhhhhhhcc-CcccccChHHhhccCC
Confidence 346778888763 56666643 356788888874 46666642 34678888887 5788999889999999
Q ss_pred CeEEEeCCcc
Q 018079 326 QKLTIWGCPL 335 (361)
Q Consensus 326 ~~L~l~~c~~ 335 (361)
+.|++++++-
T Consensus 448 ~~LdLs~N~L 457 (788)
T PRK15387 448 TTVNLEGNPL 457 (788)
T ss_pred CeEECCCCCC
Confidence 9999999974
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.42 E-value=1.8e-15 Score=141.87 Aligned_cols=236 Identities=21% Similarity=0.168 Sum_probs=148.8
Q ss_pred eeecCCCCcccccCcc-CCCccccceecceeeecCCCCCcccccc--eec--eeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 3 SLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRG--ECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~--~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
+|+++++ +|+.+|.. +-+|+.|-+|++ ..+.+..|+ .+. .+.-..+.+ ..+.......+..|+.|+
T Consensus 130 VLNLS~N-~IetIPn~lfinLtDLLfLDL-------S~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 130 VLNLSYN-NIETIPNSLFINLTDLLFLDL-------SNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred EEEcccC-ccccCCchHHHhhHhHhhhcc-------ccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhh
Confidence 5777877 77888865 667777778888 444555554 110 111111111 112222333455566677
Q ss_pred eEEEEecCC-CCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCee
Q 018079 78 RLHLQFGGK-DEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLREL 156 (361)
Q Consensus 78 ~L~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L 156 (361)
.|.++.... .+....+++...++..+|+.+++ ...+++.+..+++|+.|+++++...++.-.++...+|+.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-------LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETL 273 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccC-------CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhh
Confidence 777765432 33335566667777777777766 6667778888888888888888877766666677788888
Q ss_pred eecCCCCCCCCCC-CCCCc-cceEeccccccce--eecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079 157 NLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVK--RVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232 (361)
Q Consensus 157 ~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~ 232 (361)
+++.+ .++.+|. +..++ |+.|.+.+.. +. .+|. .++.+.+|+.+..++ ++++-
T Consensus 274 NlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPS--------------------GIGKL~~Levf~aan-N~LEl 330 (1255)
T KOG0444|consen 274 NLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPS--------------------GIGKLIQLEVFHAAN-NKLEL 330 (1255)
T ss_pred ccccc-hhccchHHHhhhHHHHHHHhccCc-ccccCCcc--------------------chhhhhhhHHHHhhc-ccccc
Confidence 88874 6677776 77777 8887776532 21 1221 144666777776665 44554
Q ss_pred hhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCc
Q 018079 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENM 284 (361)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 284 (361)
.|. +++.|++|+.|.+.. +++-++|..+.-++-|+.|++...+++
T Consensus 331 VPE------glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 331 VPE------GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Cch------hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 443 666777788877744 667777777777777777777776665
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.29 E-value=1.8e-13 Score=123.03 Aligned_cols=301 Identities=15% Similarity=0.156 Sum_probs=186.4
Q ss_pred CceeecCCCCcccc--cCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHH-HHhhcCCCCCC
Q 018079 1 MRSLLNFGTNSLKY--MPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEA-ERLQLSNKKNL 76 (361)
Q Consensus 1 L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~-~~~~l~~l~~L 76 (361)
||.|.+++|..... +-..-...+++++|.++.+... +...+..+. ...+++..++.......+. +.....++++|
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i-Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI-TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceec-cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46677777743222 2222345566777777666544 333344443 2223333333333333333 33356788999
Q ss_pred ceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh---hcCccC
Q 018079 77 LRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL---TSLANL 153 (361)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~---~~l~~L 153 (361)
++++++|+.... ...+-.....+..++.+...||...+.-... ++..-+
T Consensus 219 ~~lNlSwc~qi~----------------------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 219 KYLNLSWCPQIS----------------------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred HHhhhccCchhh----------------------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 999999987643 1122222334445666666677655432221 245556
Q ss_pred CeeeecCCCCCCCCCC--CCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079 154 RELNLSLCFNCEHLPQ--LGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE 229 (361)
Q Consensus 154 ~~L~l~~~~~~~~l~~--l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 229 (361)
..+++..|..+++... +... . |+.+..++|..+...+....+. +.++|+.+.+.+|..
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~------------------~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ------------------HCHNLQVLELSGCQQ 332 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc------------------CCCceEEEeccccch
Confidence 6777777766664432 3333 3 8888888887766655544433 678999999999998
Q ss_pred chhhhhhhccccccccCCCccEEEEecCCCCCcc--chhccCCCCcceEeeccCCCcccCCccccccc--CCCCCccEEE
Q 018079 230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL--PDYLLQMTVLQNLRIFFCENMEELPILEDHRT--TDIPRLSSLR 305 (361)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l--~~l~~L~~L~ 305 (361)
+.+..+ ...-.+++.|+.+++.+|....+- -.-..+++.|+.+.+++|..+++-. .+.+.- -....|+.+.
T Consensus 333 fsd~~f----t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 333 FSDRGF----TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred hhhhhh----hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh-hhhhhhccccccccceee
Confidence 877665 344457899999999988655432 2223458999999999998776541 111222 2266799999
Q ss_pred EecCCCCCccc-cccCCCCCCCeEEEeCCccchhhccCCCCcccchhccCCceec
Q 018079 306 IGYCPKLKVLP-DCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKW 359 (361)
Q Consensus 306 l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~~ 359 (361)
+.+|+.+++-. +.+..+++|+.+++.+|..+.+... -+.-.|.|+|++
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i------~~~~~~lp~i~v 456 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI------SRFATHLPNIKV 456 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh------HHHHhhCcccee
Confidence 99999987754 6678889999999999988764222 123456666654
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=1.6e-11 Score=124.98 Aligned_cols=214 Identities=26% Similarity=0.318 Sum_probs=115.9
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKN 75 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~ 75 (361)
||+||+++|..+.++|++|++|.+||+|++ ..+.+.+|+ |+ .+...++........ .+.....|.+
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L-------~~t~I~~LP~~l~~Lk-~L~~Lnl~~~~~l~~-~~~i~~~L~~ 643 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDL-------SDTGISHLPSGLGNLK-KLIYLNLEVTGRLES-IPGILLELQS 643 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccc-------cCCCccccchHHHHHH-hhheecccccccccc-ccchhhhccc
Confidence 789999999899999999999999999999 666776666 33 333334333222111 1445666889
Q ss_pred CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCC-
Q 018079 76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLR- 154 (361)
Q Consensus 76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~- 154 (361)
||.|.+....... .......+..+.+|+.+.+..... .+-..+..+..|.
T Consensus 644 Lr~L~l~~s~~~~----------------------------~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 644 LRVLRLPRSALSN----------------------------DKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRS 694 (889)
T ss_pred ccEEEeecccccc----------------------------chhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHH
Confidence 9999988765211 333445556666676666644332 1111111222222
Q ss_pred ---eeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCccc-CCCCccEEEEcCCcc
Q 018079 155 ---ELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVI-AFPKLKSLEIDGMKE 229 (361)
Q Consensus 155 ---~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~ 229 (361)
.+.+.+|........++.++ |+.|.+.+|...+... ....... .- .|+++..+.+.+|..
T Consensus 695 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~--------------~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 695 LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLI--------------VLLCFPNLSKVSILNCHM 759 (889)
T ss_pred HhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccc--------------hhhhHHHHHHHHhhcccc
Confidence 22222232233333456666 7777777766432221 1110000 00 255555555555544
Q ss_pred chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcc
Q 018079 230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQ 274 (361)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 274 (361)
..+... ..-.|+|+.|.+.+|..++.+......+..++
T Consensus 760 ~r~l~~-------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 760 LRDLTW-------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred ccccch-------hhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 443321 11356777777777766665544443333333
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.16 E-value=3.9e-13 Score=107.24 Aligned_cols=182 Identities=27% Similarity=0.344 Sum_probs=140.1
Q ss_pred HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCC
Q 018079 122 EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEES 199 (361)
Q Consensus 122 ~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~ 199 (361)
.++-.+.+...|.++++....+|+.+..+.+|+.|+++++ .++.+|. +..+| |+.|++. ++.+..+|..
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lprg------- 97 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILPRG------- 97 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCccc-------
Confidence 3455567788899999998889999999999999999985 7888888 88999 9999997 5667777765
Q ss_pred CCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeec
Q 018079 200 SEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIF 279 (361)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 279 (361)
++.||.|+.|++.+ .++.+-.. +..+..+.-|+.|++++ +..+.+|..++.+++|+.|.++
T Consensus 98 -------------fgs~p~levldlty-nnl~e~~l----pgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 98 -------------FGSFPALEVLDLTY-NNLNENSL----PGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLR 158 (264)
T ss_pred -------------cCCCchhhhhhccc-cccccccC----CcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeec
Confidence 44899999999987 44543333 33555667788899988 5688899999999999999999
Q ss_pred cCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCC---CCCeEEEeCCccch
Q 018079 280 FCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTT---TLQKLTIWGCPLLE 337 (361)
Q Consensus 280 ~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~---~L~~L~l~~c~~l~ 337 (361)
. +.+-++|+ .++.++.|++|+|.+ +.++-+|..++++. +=+.+.+..+|.+.
T Consensus 159 d-ndll~lpk----eig~lt~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 159 D-NDLLSLPK----EIGDLTRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred c-CchhhCcH----HHHHHHHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 8 56667786 677788899999998 67888886665442 12344555555544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.16 E-value=4.4e-11 Score=119.94 Aligned_cols=159 Identities=22% Similarity=0.302 Sum_probs=95.8
Q ss_pred CccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCCC
Q 018079 129 NVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS 206 (361)
Q Consensus 129 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 206 (361)
+|++|++++|....+|..+. .+|+.|++++| .+..+|. .++ |+.|+++++ .+..++..
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~--~lp~sL~~L~Ls~N-~Lt~LP~~-------------- 322 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPA--HLPSGITHLNVQSN-SLTALPET-------------- 322 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcc--cchhhHHHHHhcCC-ccccCCcc--------------
Confidence 46666666555444554332 35666666654 3444442 223 555555542 23333321
Q ss_pred CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCccc
Q 018079 207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEE 286 (361)
Q Consensus 207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 286 (361)
..++|+.|++.++ .+..++. . ..++|+.|+++++ .+..+|..+ .++|+.|++++| .+..
T Consensus 323 --------l~~sL~~L~Ls~N-~Lt~LP~------~--l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~ 381 (754)
T PRK15370 323 --------LPPGLKTLEAGEN-ALTSLPA------S--LPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTN 381 (754)
T ss_pred --------ccccceeccccCC-ccccCCh------h--hcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCC
Confidence 2367888888875 4555543 1 2368999999885 577777654 368899999885 5666
Q ss_pred CCcccccccCCCCCccEEEEecCCCCCcccccc----CCCCCCCeEEEeCCcc
Q 018079 287 LPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCL----LRTTTLQKLTIWGCPL 335 (361)
Q Consensus 287 lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l----~~l~~L~~L~l~~c~~ 335 (361)
+|. .+ ..+|+.|++++ +++..+|..+ ..++++..+++.++|-
T Consensus 382 LP~----~l--~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 382 LPE----NL--PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCH----hH--HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 663 11 23677788887 4666776543 3457888899988874
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.09 E-value=4.4e-10 Score=112.45 Aligned_cols=250 Identities=18% Similarity=0.124 Sum_probs=142.2
Q ss_pred eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
.|+++++ .+..+|+++. .+|+.|++. .+.+..++ |+ .+.+.+- .+..+ + ...++|+
T Consensus 205 ~LdLs~~-~LtsLP~~l~--~~L~~L~L~-------~N~Lt~LP~lp~~Lk-~LdLs~N-~LtsL----P---~lp~sL~ 265 (788)
T PRK15387 205 VLNVGES-GLTTLPDCLP--AHITTLVIP-------DNNLTSLPALPPELR-TLEVSGN-QLTSL----P---VLPPGLL 265 (788)
T ss_pred EEEcCCC-CCCcCCcchh--cCCCEEEcc-------CCcCCCCCCCCCCCc-EEEecCC-ccCcc----c---Ccccccc
Confidence 5788888 8888898776 378888883 34444443 22 3333220 11111 0 1124666
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeee
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELN 157 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~ 157 (361)
.|+++.|.....+ .....+..|++..++ ...++. .+++|++|++++|....+|.. ..+|+.|+
T Consensus 266 ~L~Ls~N~L~~Lp----~lp~~L~~L~Ls~N~-------Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~ 328 (788)
T PRK15387 266 ELSIFSNPLTHLP----ALPSGLCKLWIFGNQ-------LTSLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLW 328 (788)
T ss_pred eeeccCCchhhhh----hchhhcCEEECcCCc-------cccccc---cccccceeECCCCccccCCCC---cccccccc
Confidence 7777666543211 122344555555443 222222 235688888887776666542 23466666
Q ss_pred ecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCCCCC--CCCcccCCCCccEEEEcCCccchhh
Q 018079 158 LSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSS--SSPSVIAFPKLKSLEIDGMKELEEW 233 (361)
Q Consensus 158 l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~L~~L~L~~~~~l~~~ 233 (361)
+++| .+..+|. +| |+.|++++ +.++.+|.... .+..+.++.+. .++. ...+|+.|+++++ .+..+
T Consensus 329 Ls~N-~L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~lp~---~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N-~Lt~L 397 (788)
T PRK15387 329 AYNN-QLTSLPT---LPSGLQELSVSD-NQLASLPTLPS---ELYKLWAYNNRLTSLPA--LPSGLKELIVSGN-RLTSL 397 (788)
T ss_pred cccC-ccccccc---cccccceEecCC-CccCCCCCCCc---ccceehhhccccccCcc--cccccceEEecCC-cccCC
Confidence 6664 4455553 34 77777775 34555543211 11111111111 1111 2347899999874 56655
Q ss_pred hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079 234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK 313 (361)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~ 313 (361)
+. ..++|+.|+++++ .+..+|.. +.+|+.|++++ +.++.+|. .+.++++|+.|++++++.-.
T Consensus 398 P~---------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~----sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 398 PV---------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPE----SLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CC---------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccCh----HHhhccCCCeEECCCCCCCc
Confidence 44 3568999999985 68888754 35788899987 56778885 56678899999999875544
Q ss_pred cccc
Q 018079 314 VLPD 317 (361)
Q Consensus 314 ~l~~ 317 (361)
..+.
T Consensus 460 ~~~~ 463 (788)
T PRK15387 460 RTLQ 463 (788)
T ss_pred hHHH
Confidence 4443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=6.1e-10 Score=111.84 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=113.5
Q ss_pred CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCC-c-cceEeccccccceeecccccccCCCCCCCCC
Q 018079 128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 205 (361)
++|+.|++++|....+|.++. .+|+.|+++++ .+..+|. .+ + |+.|+++++ .++.++..
T Consensus 241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~--~l~~sL~~L~Ls~N-~Lt~LP~~------------- 301 (754)
T PRK15370 241 DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPE--NLPEELRYLSVYDN-SIRTLPAH------------- 301 (754)
T ss_pred ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCcccc--ccCCCCcEEECCCC-ccccCccc-------------
Confidence 478999999998878887664 57999999875 6666664 23 4 999999875 46655532
Q ss_pred CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079 206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME 285 (361)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 285 (361)
..++|+.|++.++ .+..++. . ..++|+.|++.+| .++.+|..+ +++|+.|++++| .+.
T Consensus 302 ---------lp~sL~~L~Ls~N-~Lt~LP~------~--l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~L~ 359 (754)
T PRK15370 302 ---------LPSGITHLNVQSN-SLTALPE------T--LPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-QIT 359 (754)
T ss_pred ---------chhhHHHHHhcCC-ccccCCc------c--ccccceeccccCC-ccccCChhh--cCcccEEECCCC-CCC
Confidence 1246888888873 4555443 1 2468999999886 577788655 379999999986 566
Q ss_pred cCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 286 ELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 286 ~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
.+|. .+ .++|+.|++++| .++.+|..+. .+|+.|++++|.
T Consensus 360 ~LP~----~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 360 VLPE----TL--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred cCCh----hh--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC
Confidence 6663 11 368999999986 6778887664 468888888874
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.99 E-value=1.3e-11 Score=120.91 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079 298 IPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 298 l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 334 (361)
+..|+.|++++ +.+..+| ..+..+..|++|+++|+.
T Consensus 382 ~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred ccceeeeeecc-cccccCCHHHHhchHHhHHHhcccch
Confidence 77899999998 6888888 567888999999999874
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.85 E-value=2.2e-09 Score=98.38 Aligned_cols=200 Identities=22% Similarity=0.193 Sum_probs=112.0
Q ss_pred hHHHHHhcCCCCCccEEEecccCCCC-CchhhhcCc---cCCeeeecCCCCCC-CCC----CCCCC-c-cceEecccccc
Q 018079 117 DKQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLA---NLRELNLSLCFNCE-HLP----QLGKL-P-LEKLQLKNLKS 185 (361)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~---~L~~L~l~~~~~~~-~l~----~l~~l-~-L~~L~l~~~~~ 185 (361)
...+...+..+++|++|+++++.... .+..+..+. +|+.|++++|.... ..+ .+..+ + |+.|++++|.
T Consensus 70 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~- 148 (319)
T cd00116 70 LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR- 148 (319)
T ss_pred HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-
Confidence 34455666667888888888776542 334444333 38888888764221 111 13455 5 8888888765
Q ss_pred ceeec-ccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCC--
Q 018079 186 VKRVG-NEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLK-- 261 (361)
Q Consensus 186 l~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-- 261 (361)
++... ..+... +..+++|++|++.++. +..... .+ ...+..+++|+.|++++|. +.
T Consensus 149 l~~~~~~~~~~~----------------~~~~~~L~~L~l~~n~-l~~~~~~~l--~~~l~~~~~L~~L~L~~n~-i~~~ 208 (319)
T cd00116 149 LEGASCEALAKA----------------LRANRDLKELNLANNG-IGDAGIRAL--AEGLKANCNLEVLDLNNNG-LTDE 208 (319)
T ss_pred CCchHHHHHHHH----------------HHhCCCcCEEECcCCC-CchHHHHHH--HHHHHhCCCCCEEeccCCc-cChH
Confidence 23111 111100 3356788888888753 331110 00 1123345788888888863 33
Q ss_pred ---ccchhccCCCCcceEeeccCCCcccC--CcccccccCCCCCccEEEEecCCCC----CccccccCCCCCCCeEEEeC
Q 018079 262 ---ALPDYLLQMTVLQNLRIFFCENMEEL--PILEDHRTTDIPRLSSLRIGYCPKL----KVLPDCLLRTTTLQKLTIWG 332 (361)
Q Consensus 262 ---~l~~~~~~l~~L~~L~l~~c~~l~~l--p~L~~L~l~~l~~L~~L~l~~c~~l----~~l~~~l~~l~~L~~L~l~~ 332 (361)
.+...+..+++|+.|++++|+ +... ..+...-....+.|++|++.+|... ..+...+..+++|+++++++
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 233345557888888888863 3220 0000000012468889999887432 22445566678899999988
Q ss_pred Cccchh
Q 018079 333 CPLLEN 338 (361)
Q Consensus 333 c~~l~~ 338 (361)
+.--.+
T Consensus 288 N~l~~~ 293 (319)
T cd00116 288 NKFGEE 293 (319)
T ss_pred CCCcHH
Confidence 865443
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=2.6e-10 Score=102.98 Aligned_cols=254 Identities=20% Similarity=0.148 Sum_probs=134.2
Q ss_pred eeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCC
Q 018079 50 ECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLN 129 (361)
Q Consensus 50 ~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 129 (361)
++.+.++..... ........+++++++|++.++.... .....+.-..+++
T Consensus 142 ~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iT----------------------------d~s~~sla~~C~~ 191 (483)
T KOG4341|consen 142 ELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKIT----------------------------DSSLLSLARYCRK 191 (483)
T ss_pred cccccccccCCc--chhhHHhhhCCchhhhhhhcceecc----------------------------HHHHHHHHHhcch
Confidence 455555444332 1222234567777777777665432 2233444456678
Q ss_pred ccEEEecccCCCC---CchhhhcCccCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeeccccccc--CCCC
Q 018079 130 VEELWIIFYGGNI---FPKWLTSLANLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGI--EESS 200 (361)
Q Consensus 130 L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~--~~~~ 200 (361)
++++++..|...+ +-.....+++|++|+++||+.+.. +.. ..... ++.+...||..++.-....... ..+-
T Consensus 192 l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~ 271 (483)
T KOG4341|consen 192 LRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEIL 271 (483)
T ss_pred hhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhh
Confidence 8888888876544 111223688888888888876653 222 22333 5555555554322100000000 0000
Q ss_pred CCC------CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhcc--CCCC
Q 018079 201 EDG------PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLL--QMTV 272 (361)
Q Consensus 201 ~~~------~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~ 272 (361)
.++ +++...+..-.++..|+.|+.++|....+.+. ...-++.++|+.+.+.+|.+++...+.+. +++.
T Consensus 272 ~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l----~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 272 KLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL----WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred ccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH----HHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 000 00111111112345566666666665554443 22334566667776666666555444332 2666
Q ss_pred cceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcc-----ccccCCCCCCCeEEEeCCccchhh
Q 018079 273 LQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVL-----PDCLLRTTTLQKLTIWGCPLLENR 339 (361)
Q Consensus 273 L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l-----~~~l~~l~~L~~L~l~~c~~l~~~ 339 (361)
|+.+++.+|..+..- .|..+. .+|+.|+++.++.|..+++- ...-..+..|..+.+.+||.+.+.
T Consensus 348 Le~l~~e~~~~~~d~-tL~sls-~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 348 LERLDLEECGLITDG-TLASLS-RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhhcccccceehhh-hHhhhc-cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 666666666544332 122222 23889999999988877664 233345677889999999988764
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.83 E-value=1.8e-10 Score=92.12 Aligned_cols=153 Identities=17% Similarity=0.047 Sum_probs=109.8
Q ss_pred eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079 3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ 82 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 82 (361)
.|.++.+ ++..+|+.|+.+.+|+.|++++.....-...+..++ ++++.++.. +--...+..++.++-|+.|++.
T Consensus 37 rLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~---klr~lnvgm--nrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 37 RLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP---KLRILNVGM--NRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhch---hhhheecch--hhhhcCccccCCCchhhhhhcc
Confidence 4667888 999999999999999999996554442233444443 444444321 1112345568899999999999
Q ss_pred ecCCCCC-CcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCC
Q 018079 83 FGGKDED-WRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLC 161 (361)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~ 161 (361)
+|..... -..-+-..+.++-+++.|++ ..-++..++++.+||.|.+.++...++|..++.+..|+.|.+.++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dnd-------fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDND-------FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCC-------cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 8765321 12334455667778888886 666788888999999999998888889999998999999999885
Q ss_pred CCCCCCCC
Q 018079 162 FNCEHLPQ 169 (361)
Q Consensus 162 ~~~~~l~~ 169 (361)
.+..+|+
T Consensus 184 -rl~vlpp 190 (264)
T KOG0617|consen 184 -RLTVLPP 190 (264)
T ss_pred -eeeecCh
Confidence 5666664
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=1.5e-08 Score=92.92 Aligned_cols=221 Identities=20% Similarity=0.136 Sum_probs=125.5
Q ss_pred HHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC--
Q 018079 65 AERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-- 142 (361)
Q Consensus 65 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-- 142 (361)
.....+.++++|++|+++.+...... ...+...... ++|++|++++|....
T Consensus 72 ~~~~~l~~~~~L~~L~l~~~~~~~~~--------------------------~~~~~~l~~~-~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 72 SLLQGLTKGCGLQELDLSDNALGPDG--------------------------CGVLESLLRS-SSLQELKLNNNGLGDRG 124 (319)
T ss_pred HHHHHHHhcCceeEEEccCCCCChhH--------------------------HHHHHHHhcc-CcccEEEeeCCccchHH
Confidence 34455777999999999887653200 1222222233 679999998876542
Q ss_pred ---CchhhhcC-ccCCeeeecCCCCCC----CCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCc
Q 018079 143 ---FPKWLTSL-ANLRELNLSLCFNCE----HLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPS 212 (361)
Q Consensus 143 ---~p~~~~~l-~~L~~L~l~~~~~~~----~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 212 (361)
+...+..+ ++|+.|++++|.-.. .+.. +..++ |+.|++++|. +.......... .
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~---------------~ 188 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAE---------------G 188 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHH---------------H
Confidence 22334456 788999998874321 1111 44566 8888888754 33211111100 0
Q ss_pred ccCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCcc-chhc-c----CCCCcceEeeccCCCcc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKAL-PDYL-L----QMTVLQNLRIFFCENME 285 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~-~----~l~~L~~L~l~~c~~l~ 285 (361)
+..+++|+.|++++|. +..... .+ ...+..+++|+.|++++|. ++.. ...+ . ..+.|++|++++|. ++
T Consensus 189 l~~~~~L~~L~L~~n~-i~~~~~~~l--~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~ 263 (319)
T cd00116 189 LKANCNLEVLDLNNNG-LTDEGASAL--AETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-IT 263 (319)
T ss_pred HHhCCCCCEEeccCCc-cChHHHHHH--HHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CC
Confidence 2356799999998864 322111 00 1234567889999998863 4431 1111 1 14789999999873 32
Q ss_pred c--CCcccccccCCCCCccEEEEecCCCCCc----cccccCCC-CCCCeEEEeCCc
Q 018079 286 E--LPILEDHRTTDIPRLSSLRIGYCPKLKV----LPDCLLRT-TTLQKLTIWGCP 334 (361)
Q Consensus 286 ~--lp~L~~L~l~~l~~L~~L~l~~c~~l~~----l~~~l~~l-~~L~~L~l~~c~ 334 (361)
. ...+.. .+..+++|+.++++++..-.. +...+... +.|+.+++.+.|
T Consensus 264 ~~~~~~l~~-~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 264 DDGAKDLAE-VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cHHHHHHHH-HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 0 000000 223357889999988644322 34445555 678888887654
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=2.1e-08 Score=102.51 Aligned_cols=176 Identities=23% Similarity=0.190 Sum_probs=106.9
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCC----cccccceeceeEEcCCCCCCChHHHHHhhcCCCCCC
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGS----NTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNL 76 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~----~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L 76 (361)
||+|+++++ .+.++|.++++|+.|++|++...+...... .+.+|+ .+.+..-. ..........+.++++|
T Consensus 597 LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr---~L~l~~s~--~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 597 LRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR---VLRLPRSA--LSNDKLLLKELENLEHL 670 (889)
T ss_pred hhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhccccc---EEEeeccc--cccchhhHHhhhcccch
Confidence 799999999 999999999999999999997665431121 133333 33332211 12223344456778888
Q ss_pred ceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCc----cEEEecccCCCCCchhhhcCcc
Q 018079 77 LRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNV----EELWIIFYGGNIFPKWLTSLAN 152 (361)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~p~~~~~l~~ 152 (361)
+.+...... . .+.+.+....+| +.+.+.++...+.+..+..+.+
T Consensus 671 ~~ls~~~~s-------------------------------~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 671 ENLSITISS-------------------------------V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGN 718 (889)
T ss_pred hhheeecch-------------------------------h-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccC
Confidence 888775433 1 222222222222 2334334444445566678899
Q ss_pred CCeeeecCCCCCCCCC----C--CCC-Cc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEE
Q 018079 153 LRELNLSLCFNCEHLP----Q--LGK-LP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEI 224 (361)
Q Consensus 153 L~~L~l~~~~~~~~l~----~--l~~-l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 224 (361)
|+.|.+.+|...+... . ... ++ +..+.+.+|.....+.+. ...|+|+.|.+
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---------------------~f~~~L~~l~l 777 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---------------------LFAPHLTSLSL 777 (889)
T ss_pred cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---------------------hccCcccEEEE
Confidence 9999999985543111 1 122 55 566666666655554432 25689999999
Q ss_pred cCCccchhhhh
Q 018079 225 DGMKELEEWNY 235 (361)
Q Consensus 225 ~~~~~l~~~~~ 235 (361)
..|...++...
T Consensus 778 ~~~~~~e~~i~ 788 (889)
T KOG4658|consen 778 VSCRLLEDIIP 788 (889)
T ss_pred ecccccccCCC
Confidence 99988776554
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.1e-09 Score=92.27 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=109.9
Q ss_pred HHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeeecCCCCCCCCCC---CCCCc-cceEeccccccceeecccccc
Q 018079 121 LEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLG 195 (361)
Q Consensus 121 ~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~ 195 (361)
..-+..+.+|+.|.++|..-.. +...++.=.+|+.++++.|.+++.... +..+. |..|+++.|.-..+.......
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 3445677888888888866433 334455667899999999888775433 55666 888888887644433221111
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc-chhhhhhhccccccccCCCccEEEEecCCCCCc-cchhccCCCCc
Q 018079 196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE-LEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-LPDYLLQMTVL 273 (361)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L 273 (361)
.--++|+.|+++||.. +...-. ......+|+|..|++++|..++. .-..+..++.|
T Consensus 283 ------------------hise~l~~LNlsG~rrnl~~sh~----~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 283 ------------------HISETLTQLNLSGYRRNLQKSHL----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred ------------------hhchhhhhhhhhhhHhhhhhhHH----HHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 1347889999998753 222211 12344799999999999987774 22234568999
Q ss_pred ceEeeccCCCcccCCcccccccCCCCCccEEEEecCCC
Q 018079 274 QNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPK 311 (361)
Q Consensus 274 ~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~ 311 (361)
++|+++.|..+- | =+.+.+...|+|..|++.+|-.
T Consensus 341 ~~lSlsRCY~i~--p-~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 341 QHLSLSRCYDII--P-ETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeeehhhhcCCC--h-HHeeeeccCcceEEEEeccccC
Confidence 999999997652 2 1233556678889999988743
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.54 E-value=3.5e-09 Score=95.19 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=22.1
Q ss_pred eeecCCCCcccccCcc-CCCccccceecce
Q 018079 3 SLLNFGTNSLKYMPIG-ISKLTSLRRLDKF 31 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~ 31 (361)
.+++..| +|..+|++ |+.+.+||.|+++
T Consensus 71 eirLdqN-~I~~iP~~aF~~l~~LRrLdLS 99 (498)
T KOG4237|consen 71 EIRLDQN-QISSIPPGAFKTLHRLRRLDLS 99 (498)
T ss_pred EEEeccC-CcccCChhhccchhhhceeccc
Confidence 4567777 88888876 8888889999883
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.6e-09 Score=89.56 Aligned_cols=160 Identities=24% Similarity=0.322 Sum_probs=113.2
Q ss_pred hhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC---Cc
Q 018079 68 LQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI---FP 144 (361)
Q Consensus 68 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~p 144 (361)
..+..|.+|+.|.+.++.. .+.+...+.+-.+|..|+++.|.+.+ ..
T Consensus 204 ~iLs~C~kLk~lSlEg~~L------------------------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRL------------------------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred HHHHHHHhhhhcccccccc------------------------------CcHHHHHHhccccceeeccccccccchhHHH
Confidence 3456677777777777665 44566778888999999999988765 22
Q ss_pred hhhhcCccCCeeeecCCCCCCCCCC--CCCCc--cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCcc
Q 018079 145 KWLTSLANLRELNLSLCFNCEHLPQ--LGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLK 220 (361)
Q Consensus 145 ~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 220 (361)
-.+.+++.|..|+++||....+... +.... ++.|+++||. ..+...-... -...+|+|.
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r--rnl~~sh~~t---------------L~~rcp~l~ 316 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR--RNLQKSHLST---------------LVRRCPNLV 316 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH--hhhhhhHHHH---------------HHHhCCcee
Confidence 2345899999999999966554433 44554 9999999875 2222110000 033789999
Q ss_pred EEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch---hccCCCCcceEeeccC
Q 018079 221 SLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD---YLLQMTVLQNLRIFFC 281 (361)
Q Consensus 221 ~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~l~~L~~L~l~~c 281 (361)
.|++++|..+..-.+ ..+..|+.|++|.+++|..+. |. .+...|+|.+|++.+|
T Consensus 317 ~LDLSD~v~l~~~~~-----~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCF-----QEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccccccccCchHH-----HHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 999999988776443 345689999999999996442 33 3456899999999987
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.9e-08 Score=90.40 Aligned_cols=182 Identities=19% Similarity=0.172 Sum_probs=88.4
Q ss_pred HhcCCCCCccEEEecccCCCC---CchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccc
Q 018079 122 EALQPPLNVEELWIIFYGGNI---FPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLG 195 (361)
Q Consensus 122 ~~l~~l~~L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~ 195 (361)
+....+++++.|+++.+-... +-.....+++|+.|+++.+........ -..++ ++.|.++.|. +..-.....
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~- 217 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWI- 217 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHH-
Confidence 344556677777777654322 222233677777777766422111111 23455 7777777664 221111111
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc--hhccCCCCc
Q 018079 196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP--DYLLQMTVL 273 (361)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L 273 (361)
+..||+|+.|.+.+....... ......+..|++|++++.+ +-+.+ .-.+.++.|
T Consensus 218 -----------------~~~fPsl~~L~L~~N~~~~~~------~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 218 -----------------LLTFPSLEVLYLEANEIILIK------ATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGL 273 (505)
T ss_pred -----------------HHhCCcHHHhhhhccccccee------cchhhhhhHHhhccccCCc-ccccccccccccccch
Confidence 225677777766653211100 1122245567777776643 33333 234456666
Q ss_pred ceEeeccCCCcccCCccccccc------CCCCCccEEEEecCCCCCccc--cccCCCCCCCeEEEeCCc
Q 018079 274 QNLRIFFCENMEELPILEDHRT------TDIPRLSSLRIGYCPKLKVLP--DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 274 ~~L~l~~c~~l~~lp~L~~L~l------~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~ 334 (361)
..|+++.| .++++...+. ..+++|+.|++.. +++...+ ..++.+++|+.+.+.+.+
T Consensus 274 ~~Lnls~t----gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 274 NQLNLSST----GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhcccc----CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccc
Confidence 66666654 1222222222 2266777777766 3443333 335555666666655443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.36 E-value=2.5e-08 Score=89.76 Aligned_cols=243 Identities=17% Similarity=0.133 Sum_probs=136.1
Q ss_pred CceeecCCCCccccc-CccCCCccccceecceeeecCCCCCcccccc---eec--eeEEcCCCCCCChHHHHHhhcCCCC
Q 018079 1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ---LRG--ECSIEGLCNVSHVDEAERLQLSNKK 74 (361)
Q Consensus 1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~---L~~--~l~l~~l~~~~~~~~~~~~~l~~l~ 74 (361)
||.||+++| +|+.+ |..|..+.+|-.|.++ ..++|++++ +.+ .++...+ +...........++.++
T Consensus 93 LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvly------g~NkI~~l~k~~F~gL~slqrLll-Nan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 93 LRRLDLSKN-NISFIAPDAFKGLASLLSLVLY------GNNKITDLPKGAFGGLSSLQRLLL-NANHINCIRQDALRDLP 164 (498)
T ss_pred hceeccccc-chhhcChHhhhhhHhhhHHHhh------cCCchhhhhhhHhhhHHHHHHHhc-ChhhhcchhHHHHHHhh
Confidence 789999999 88877 5669999998888883 237778777 110 1111110 11122344566788999
Q ss_pred CCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH------HHhcCCCCCccEEEecccCCCCCchhhh
Q 018079 75 NLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL------LEALQPPLNVEELWIIFYGGNIFPKWLT 148 (361)
Q Consensus 75 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~p~~~~ 148 (361)
++..|.+..|........++.....++-++++.+..-.+|..-... +-..+......-..+........++. .
T Consensus 165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~-k 243 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR-K 243 (498)
T ss_pred hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh-h
Confidence 9999999988877777777777777777777765433333210000 00011111111111111111111110 0
Q ss_pred cCccCCee---eecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEE
Q 018079 149 SLANLREL---NLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSL 222 (361)
Q Consensus 149 ~l~~L~~L---~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 222 (361)
....++.+ ..+.|......|. +..+| |+.|++++ +.++.+.+.++ .+...++.|
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aF-------------------e~~a~l~eL 303 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAF-------------------EGAAELQEL 303 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhhh-------------------cchhhhhhh
Confidence 11112222 1223333333443 77888 88888886 55777666543 256677777
Q ss_pred EEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc-hhccCCCCcceEeec
Q 018079 223 EIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP-DYLLQMTVLQNLRIF 279 (361)
Q Consensus 223 ~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~ 279 (361)
.+.+ ++++.+.. ..+.++..|+.|++.+ ++++.+. ..+..+.+|.+|++-
T Consensus 304 ~L~~-N~l~~v~~-----~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 304 YLTR-NKLEFVSS-----GMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hcCc-chHHHHHH-----HhhhccccceeeeecC-CeeEEEecccccccceeeeeehc
Confidence 7766 45554443 4566777888888877 4666553 344557777777764
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=2.7e-07 Score=76.25 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=44.4
Q ss_pred CCCCccEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079 126 PPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG 203 (361)
Q Consensus 126 ~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 203 (361)
...++++|++.++....+. .++ .+.+|+.|++++| .+..+..+..++ |+.|++++ +.++++...+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l---------- 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGL---------- 83 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHH----------
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccch----------
Confidence 4446899999998876653 344 5788999999996 777777788888 99999986 5566664322
Q ss_pred CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc----hhccCCCCcceEeec
Q 018079 204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP----DYLLQMTVLQNLRIF 279 (361)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~----~~~~~l~~L~~L~l~ 279 (361)
...+|+|++|.+++ .++.++.. ...+..+|+|+.|++.++|- ..-+ ..+..+|+|+.|+-.
T Consensus 84 ---------~~~lp~L~~L~L~~-N~I~~l~~----l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 ---------DKNLPNLQELYLSN-NKISDLNE----LEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ---------HHH-TT--EEE-TT-S---SCCC----CGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred ---------HHhCCcCCEEECcC-CcCCChHH----hHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 12588999999886 45554433 34556788899998887542 2221 123446777776654
Q ss_pred c
Q 018079 280 F 280 (361)
Q Consensus 280 ~ 280 (361)
.
T Consensus 149 ~ 149 (175)
T PF14580_consen 149 D 149 (175)
T ss_dssp E
T ss_pred E
Confidence 3
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=3.4e-07 Score=79.94 Aligned_cols=196 Identities=19% Similarity=0.256 Sum_probs=117.0
Q ss_pred CCCCccEEEecccCCCC---------CchhhhcCccCCeeeecCCCCCCCCCCCCC-Cc-cceEeccccccceeeccccc
Q 018079 126 PPLNVEELWIIFYGGNI---------FPKWLTSLANLRELNLSLCFNCEHLPQLGK-LP-LEKLQLKNLKSVKRVGNEFL 194 (361)
Q Consensus 126 ~l~~L~~L~l~~~~~~~---------~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~-l~-L~~L~l~~~~~l~~l~~~~~ 194 (361)
-+.+|++|.+++..+.- +|-.+..+++|+.+.++.|. ...+..+.. -| |.++.+.+.. +. +.+...
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~-~~~~l~ 256 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQ-DVPSLL 256 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-cc-cccccc
Confidence 34568888888654311 34345578899999999883 333333333 34 8888877522 11 111111
Q ss_pred ccCCCC-----CCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccC
Q 018079 195 GIEESS-----EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQ 269 (361)
Q Consensus 195 ~~~~~~-----~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 269 (361)
...... +.............-.+.|+++++++ +.+.++.. ++...|+++.|+++. +.+..+. .+..
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDE------SvKL~Pkir~L~lS~-N~i~~v~-nLa~ 327 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDE------SVKLAPKLRRLILSQ-NRIRTVQ-NLAE 327 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhh------hhhhccceeEEeccc-cceeeeh-hhhh
Confidence 110000 01111111111223356788888887 45555543 556788889998887 4565554 3667
Q ss_pred CCCcceEeeccCCCccc-------CCcccccccCC-----------CCCccEEEEecCCCCCccc--cccCCCCCCCeEE
Q 018079 270 MTVLQNLRIFFCENMEE-------LPILEDHRTTD-----------IPRLSSLRIGYCPKLKVLP--DCLLRTTTLQKLT 329 (361)
Q Consensus 270 l~~L~~L~l~~c~~l~~-------lp~L~~L~l~~-----------l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~ 329 (361)
+++|+.|++++. .+.+ +.+.+.|.+++ +.+|..|++.+ +++..+- .+++++|.|+.+.
T Consensus 328 L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 328 LPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred cccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHh
Confidence 888888888873 2322 33444554443 67889999988 5666654 5789999999999
Q ss_pred EeCCcc
Q 018079 330 IWGCPL 335 (361)
Q Consensus 330 l~~c~~ 335 (361)
+.++|-
T Consensus 406 L~~NPl 411 (490)
T KOG1259|consen 406 LTGNPL 411 (490)
T ss_pred hcCCCc
Confidence 999974
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.21 E-value=1e-06 Score=72.86 Aligned_cols=108 Identities=20% Similarity=0.333 Sum_probs=46.3
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhcc-CCCCcceEeeccCCCcccCCccccc
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLL-QMTVLQNLRIFFCENMEELPILEDH 293 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~L~~L 293 (361)
.+.+|+.|+++++ .++.+. ++..+++|+.|++++ +.++++...+. .+++|++|++++ +.+.++..+.
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l~-------~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~-- 107 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKLE-------GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELE-- 107 (175)
T ss_dssp T-TT--EEE-TTS---S--T-------T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCG--
T ss_pred hhcCCCEEECCCC-CCcccc-------CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhH--
Confidence 3567777777764 344332 344577888888877 57777765543 478888888876 4555555443
Q ss_pred ccCCCCCccEEEEecCCCCCc---cccccCCCCCCCeEEEeCCc
Q 018079 294 RTTDIPRLSSLRIGYCPKLKV---LPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 294 ~l~~l~~L~~L~l~~c~~l~~---l~~~l~~l~~L~~L~l~~c~ 334 (361)
.++.+++|+.|++.++|--.. -.-.+..+|+|+.||-....
T Consensus 108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 334588888888888654322 11345678999988876554
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=2.3e-05 Score=72.81 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=47.3
Q ss_pred HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeec
Q 018079 122 EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVG 190 (361)
Q Consensus 122 ~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~ 190 (361)
+.+..+.++++|++++|....+|. -..+|+.|.+.+|..+..+|. .+| |+.|.+++|..+..+|
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccccc
Confidence 345556889999999987666772 234699999999988877774 456 9999999887665443
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.10 E-value=9e-08 Score=90.01 Aligned_cols=179 Identities=24% Similarity=0.366 Sum_probs=101.9
Q ss_pred HHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCccceEeccccccceeeccccccc
Q 018079 118 KQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLPLEKLQLKNLKSVKRVGNEFLGI 196 (361)
Q Consensus 118 ~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~L~~L~l~~~~~l~~l~~~~~~~ 196 (361)
.++++.+..+..|..+.+..|..-.+|..++.+..|..++++.+ .+..+|. +..+||+.|.+++ ++++.+|++..
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig-- 163 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIG-- 163 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCcceeEEEec-CccccCCcccc--
Confidence 34444555555566666666655556777777777777777764 5555555 5555677777775 44666665532
Q ss_pred CCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceE
Q 018079 197 EESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNL 276 (361)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 276 (361)
..+.|..|+.+.+ .+..++. .++.+.+|+.|.++. +++..+|.... .-.|..|
T Consensus 164 ------------------~~~tl~~ld~s~n-ei~slps------ql~~l~slr~l~vrR-n~l~~lp~El~-~LpLi~l 216 (722)
T KOG0532|consen 164 ------------------LLPTLAHLDVSKN-EIQSLPS------QLGYLTSLRDLNVRR-NHLEDLPEELC-SLPLIRL 216 (722)
T ss_pred ------------------cchhHHHhhhhhh-hhhhchH------HhhhHHHHHHHHHhh-hhhhhCCHHHh-CCceeee
Confidence 4566666666653 3444443 334566666666666 45666666666 3346666
Q ss_pred eeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcccccc---CCCCCCCeEEEeCC
Q 018079 277 RIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCL---LRTTTLQKLTIWGC 333 (361)
Q Consensus 277 ~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l---~~l~~L~~L~l~~c 333 (361)
+++ |+++..+|- ++.+++.|++|.+.++ -+.+=|..+ +...=.++|++.-|
T Consensus 217 DfS-cNkis~iPv----~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFS-CNKISYLPV----DFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecc-cCceeecch----hhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 666 466666663 5555666666666653 333333211 11222355666555
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.7e-06 Score=79.23 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=16.9
Q ss_pred HHHhhcCCCCCCceEEEEecCCCC
Q 018079 65 AERLQLSNKKNLLRLHLQFGGKDE 88 (361)
Q Consensus 65 ~~~~~l~~l~~L~~L~l~~~~~~~ 88 (361)
.....+..+++|+.|+++.|....
T Consensus 163 ~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 163 PVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred HHHHHHHhcccchhcccccccccC
Confidence 334456788888888888776544
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=9.4e-06 Score=75.37 Aligned_cols=68 Identities=21% Similarity=0.403 Sum_probs=43.1
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCC-ccccc
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP-ILEDH 293 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~L~~L 293 (361)
.+++++.|++++| .++.++. ..++|+.|.+++|..++.+|..+ .++|+.|.+++|..+..+| +|+.|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceE
Confidence 4567777777776 5555443 23357777777777777766543 3577777777776666666 34444
Q ss_pred c
Q 018079 294 R 294 (361)
Q Consensus 294 ~ 294 (361)
.
T Consensus 118 ~ 118 (426)
T PRK15386 118 E 118 (426)
T ss_pred E
Confidence 3
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.02 E-value=2.2e-07 Score=87.51 Aligned_cols=170 Identities=18% Similarity=0.132 Sum_probs=110.1
Q ss_pred eecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEe
Q 018079 4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF 83 (361)
Q Consensus 4 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 83 (361)
.|++.+ .+.++|.++..+..|..+.++..........+..|. .+.+.++..-+ ....+..++.| -|+.|-++.
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~---~lt~l~ls~Nq--lS~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLE---ALTFLDLSSNQ--LSHLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhh---HHHHhhhccch--hhcCChhhhcC-cceeEEEec
Confidence 456666 667777777777777777773222110111111111 22222211100 01122234444 466777776
Q ss_pred cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCC
Q 018079 84 GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFN 163 (361)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 163 (361)
|. ...+++.++...+|..|+.+.|...++|+.++.+..|+.|.+..+ .
T Consensus 153 Nk-------------------------------l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~ 200 (722)
T KOG0532|consen 153 NK-------------------------------LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-H 200 (722)
T ss_pred Cc-------------------------------cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-h
Confidence 66 445677777778899999999998889999999999999999885 5
Q ss_pred CCCCCC-CCCCccceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhh
Q 018079 164 CEHLPQ-LGKLPLEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN 234 (361)
Q Consensus 164 ~~~l~~-l~~l~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 234 (361)
+..+|. +..|||..|+++ |+++.++|..|. .|..|++|-|.+ +-+..-+
T Consensus 201 l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr--------------------~m~~Lq~l~Len-NPLqSPP 250 (722)
T KOG0532|consen 201 LEDLPEELCSLPLIRLDFS-CNKISYLPVDFR--------------------KMRHLQVLQLEN-NPLQSPP 250 (722)
T ss_pred hhhCCHHHhCCceeeeecc-cCceeecchhhh--------------------hhhhheeeeecc-CCCCCCh
Confidence 666676 778889999999 788999998765 788889988876 3344433
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.89 E-value=1e-05 Score=76.57 Aligned_cols=174 Identities=24% Similarity=0.348 Sum_probs=97.1
Q ss_pred cCCCCCccEEEecccCCCCCchhhhcCc-cCCeeeecCCCCCCCCC-CCCCCc-cceEeccccccceeecccccccCCCC
Q 018079 124 LQPPLNVEELWIIFYGGNIFPKWLTSLA-NLRELNLSLCFNCEHLP-QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESS 200 (361)
Q Consensus 124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~-~L~~L~l~~~~~~~~l~-~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 200 (361)
+...+.++.|++.++....++...+.+. +|+.|+++++ .+..++ .++.++ |+.|+++++. +..++....
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~------ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS------ 183 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhh------
Confidence 3344667777777777766777666664 7777777774 555654 466677 7777777633 455543211
Q ss_pred CCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeecc
Q 018079 201 EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFF 280 (361)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 280 (361)
..++|+.|++++ ..+..++. .......|+++.+.+. .....+..+..+.++..+.+.+
T Consensus 184 --------------~~~~L~~L~ls~-N~i~~l~~------~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 184 --------------NLSNLNNLDLSG-NKISDLPP------EIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred --------------hhhhhhheeccC-CccccCch------hhhhhhhhhhhhhcCC-cceecchhhhhcccccccccCC
Confidence 456666677666 34554444 1112333666666552 2334444445555555555333
Q ss_pred CCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 281 CENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 281 c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
..+..++. .++.+++++.|++.+ +.+++++. +..+.+++.+++++..
T Consensus 242 -n~~~~~~~----~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 242 -NKLEDLPE----SIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred -ceeeeccc----hhccccccceecccc-cccccccc-ccccCccCEEeccCcc
Confidence 22222222 344455666666665 45566655 5566666666666643
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=1.6e-05 Score=69.61 Aligned_cols=205 Identities=20% Similarity=0.162 Sum_probs=122.8
Q ss_pred CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh-hc
Q 018079 71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TS 149 (361)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~~ 149 (361)
..+++++++++.||...+ ..++..-+..+|.|+.|+++.+.-...-... ..
T Consensus 68 ~~~~~v~elDL~~N~iSd----------------------------WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISD----------------------------WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred HHhhhhhhhhcccchhcc----------------------------HHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 346788999999998766 7777788889999999999987653311111 25
Q ss_pred CccCCeeeecCCCCCC--CCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEc
Q 018079 150 LANLRELNLSLCFNCE--HLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEID 225 (361)
Q Consensus 150 l~~L~~L~l~~~~~~~--~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 225 (361)
..+|+.|.+.+. .+. .... +..+| ++.|+++. ++...+-.+...... ..+.+++++..
T Consensus 120 ~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~----------------~s~~v~tlh~~ 181 (418)
T KOG2982|consen 120 LKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSD-NSLRQLNLDDNCIED----------------WSTEVLTLHQL 181 (418)
T ss_pred ccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhcc-chhhhhccccccccc----------------cchhhhhhhcC
Confidence 678888888774 222 2222 66788 88888875 333443322211111 34567777777
Q ss_pred CCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc--cCCCCcceEeeccCCCcccCCcccccccCCCCCccE
Q 018079 226 GMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL--LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSS 303 (361)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~ 303 (361)
+|... .+.++ -.....||++..+-+.+|+ +++....- ..++++.-|+++. .++.++.++. .+.++++|..
T Consensus 182 ~c~~~--~w~~~--~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD--~Ln~f~~l~d 253 (418)
T KOG2982|consen 182 PCLEQ--LWLNK--NKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVD--ALNGFPQLVD 253 (418)
T ss_pred CcHHH--HHHHH--HhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHH--HHcCCchhhe
Confidence 76422 22211 1123368999999998875 44443332 3366666666654 3444444332 2345777777
Q ss_pred EEEecCCCCCcccc------ccCCCCCCCeEE
Q 018079 304 LRIGYCPKLKVLPD------CLLRTTTLQKLT 329 (361)
Q Consensus 304 L~l~~c~~l~~l~~------~l~~l~~L~~L~ 329 (361)
|.+...|....+-. -++++++++.|+
T Consensus 254 lRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 254 LRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eeccCCcccccccCCcceEEEEeeccceEEec
Confidence 77777666555431 245566666654
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=1.2e-05 Score=71.70 Aligned_cols=195 Identities=20% Similarity=0.216 Sum_probs=91.4
Q ss_pred HHHhcCCCCCccEEEecccCCC-CCc----hhhhcCccCCeeeecCCCCCCCCCC---------------CCCCc-cceE
Q 018079 120 LLEALQPPLNVEELWIIFYGGN-IFP----KWLTSLANLRELNLSLCFNCEHLPQ---------------LGKLP-LEKL 178 (361)
Q Consensus 120 ~~~~l~~l~~L~~L~l~~~~~~-~~p----~~~~~l~~L~~L~l~~~~~~~~l~~---------------l~~l~-L~~L 178 (361)
+.+++..+++|+++++++|..- ..+ ..+.++..|++|.+.+| ++..... .+.-+ |+.+
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 3455666677888888776432 222 23346777777777776 3332111 11222 5555
Q ss_pred eccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCC
Q 018079 179 QLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCN 258 (361)
Q Consensus 179 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 258 (361)
...+ +.+..-+....... +...|.|+.+.+....--..-...+ ...+..+|.|+.|++++.
T Consensus 163 i~~r-Nrlen~ga~~~A~~---------------~~~~~~leevr~~qN~I~~eG~~al--~eal~~~~~LevLdl~DN- 223 (382)
T KOG1909|consen 163 ICGR-NRLENGGATALAEA---------------FQSHPTLEEVRLSQNGIRPEGVTAL--AEALEHCPHLEVLDLRDN- 223 (382)
T ss_pred Eeec-cccccccHHHHHHH---------------HHhccccceEEEecccccCchhHHH--HHHHHhCCcceeeecccc-
Confidence 5543 22232222211110 3344666666665422111100000 134556777777777663
Q ss_pred CCC-----ccchhccCCCCcceEeeccCCCccc--CCcccccccCCCCCccEEEEecCCCCCc----cccccCCCCCCCe
Q 018079 259 KLK-----ALPDYLLQMTVLQNLRIFFCENMEE--LPILEDHRTTDIPRLSSLRIGYCPKLKV----LPDCLLRTTTLQK 327 (361)
Q Consensus 259 ~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~--lp~L~~L~l~~l~~L~~L~l~~c~~l~~----l~~~l~~l~~L~~ 327 (361)
-++ .+...+..+++|+.+++++|..=.. ..-.+.+. ...++|++|.+.+|..-.. +...+...|.|..
T Consensus 224 tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 224 TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK 302 (382)
T ss_pred hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence 332 1222334466677777777621100 00000000 0156777777777532211 2223444677778
Q ss_pred EEEeCCcc
Q 018079 328 LTIWGCPL 335 (361)
Q Consensus 328 L~l~~c~~ 335 (361)
|++.+|..
T Consensus 303 LnLngN~l 310 (382)
T KOG1909|consen 303 LNLNGNRL 310 (382)
T ss_pred hcCCcccc
Confidence 88877754
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.76 E-value=3.2e-05 Score=73.19 Aligned_cols=46 Identities=33% Similarity=0.412 Sum_probs=20.7
Q ss_pred hcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC
Q 018079 123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ 169 (361)
Q Consensus 123 ~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~ 169 (361)
.+..+++|+.|++.++....+|...+..+.|..|+++++ .+..+|.
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~ 203 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPP 203 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCch
Confidence 344444444444444444444443334444444444442 3444443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.70 E-value=6e-05 Score=50.81 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=24.9
Q ss_pred cCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079 295 TTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 295 l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 334 (361)
+.++++|++|++++ +.++.++ ..+.++++|++|++++|+
T Consensus 21 f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 21 FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 33455566666654 4556666 466777888888887764
No 43
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.70 E-value=1.1e-05 Score=78.23 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHhcCCCCCccEEEeccc-CCCC-Cc----hhhhcCccCCeeeecCCCCCCCCCC--CC-CCc-cceEeccccccceeec
Q 018079 121 LEALQPPLNVEELWIIFY-GGNI-FP----KWLTSLANLRELNLSLCFNCEHLPQ--LG-KLP-LEKLQLKNLKSVKRVG 190 (361)
Q Consensus 121 ~~~l~~l~~L~~L~l~~~-~~~~-~p----~~~~~l~~L~~L~l~~~~~~~~l~~--l~-~l~-L~~L~l~~~~~l~~l~ 190 (361)
.......++|+.|++.++ .... .+ .....+++|+.+++++|..+.+... +. ..+ |+.|.+.+|..++...
T Consensus 207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 207 DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence 344455566666666652 2111 11 1112446666666666654443221 22 245 6666666565433322
Q ss_pred ccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079 191 NEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232 (361)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~ 232 (361)
.... ...+++|++|++++|..+.+
T Consensus 287 l~~i------------------~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 287 LVSI------------------AERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred HHHH------------------HHhcCcccEEeeecCccchH
Confidence 2222 22566677777776666533
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.65 E-value=8e-06 Score=71.52 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=12.9
Q ss_pred cCccCCCccccceecceeeecC
Q 018079 15 MPIGISKLTSLRRLDKFVVGGG 36 (361)
Q Consensus 15 lP~~i~~L~~L~~L~l~~~~~~ 36 (361)
+|-.+.-+++|..+.++.++..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~ 227 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE 227 (490)
T ss_pred cccchHHhhhhheeeeeccchh
Confidence 4444555667777776665544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=1.6e-06 Score=84.11 Aligned_cols=199 Identities=24% Similarity=0.272 Sum_probs=93.6
Q ss_pred hHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeeccccc
Q 018079 117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFL 194 (361)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~ 194 (361)
...+...+++...|+.+..-+-+..+ |-.+..|..|++|.+.+|+ +.....+..+. |++|.-.+ ++..+...+.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~-L~~~~GL~~lr~qLe~LIC~~--Sl~Al~~v~a 151 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCD-LSTAKGLQELRHQLEKLICHN--SLDALRHVFA 151 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcc-hhhhhhhHHHHHhhhhhhhhc--cHHHHHHHHH
Confidence 44455556555555555444333222 5556688999999999883 33222233333 55543221 1122211111
Q ss_pred ccCCCCCCCCC---------CC----CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCC
Q 018079 195 GIEESSEDGPS---------SS----SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLK 261 (361)
Q Consensus 195 ~~~~~~~~~~~---------~~----~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 261 (361)
.++......+. +. ..-.++.-+|.|+.|+|++ +++.+... +..+++|+.|+|++ +.++
T Consensus 152 scggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~~-------Lr~l~~LkhLDlsy-N~L~ 222 (1096)
T KOG1859|consen 152 SCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVDN-------LRRLPKLKHLDLSY-NCLR 222 (1096)
T ss_pred HhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhHH-------HHhccccccccccc-chhc
Confidence 11110000000 00 0000123346666777665 34443322 34577777777766 4666
Q ss_pred ccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc--cccCCCCCCCeEEEeCCcc
Q 018079 262 ALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP--DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 262 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~~ 335 (361)
.+|..-..--.|+.|.+++ +.++.+- .+.++.+|+.||++++ -+.... .-+..+..|..|++.|+|-
T Consensus 223 ~vp~l~~~gc~L~~L~lrn-N~l~tL~-----gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 223 HVPQLSMVGCKLQLLNLRN-NALTTLR-----GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccccchhhhhheeeeecc-cHHHhhh-----hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6664322222377777776 2333322 3334566666666652 333222 2233445666667766653
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.53 E-value=0.00013 Score=49.20 Aligned_cols=58 Identities=28% Similarity=0.463 Sum_probs=36.2
Q ss_pred CCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccC
Q 018079 217 PKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFC 281 (361)
Q Consensus 217 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 281 (361)
|+|++|+++++ ++..++. ..+.++++|+.|++++ +.++.++. .+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~-----~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-----DSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-----TTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-----HHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 46677777764 5555543 3555677777777775 35666654 3455677777777664
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=1.5e-05 Score=77.30 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=98.5
Q ss_pred CCCCccEEEecccCCCC---CchhhhcCccCCeeeecCC-CCCCCCC----C-CCCCc-cceEeccccccceeecccccc
Q 018079 126 PPLNVEELWIIFYGGNI---FPKWLTSLANLRELNLSLC-FNCEHLP----Q-LGKLP-LEKLQLKNLKSVKRVGNEFLG 195 (361)
Q Consensus 126 ~l~~L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~-~~~~~l~----~-l~~l~-L~~L~l~~~~~l~~l~~~~~~ 195 (361)
..+.|+.+.+.++.... +-+.....++|+.|++++| ......+ . ....+ ++.++++.|..+++.......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36788888888876554 2334447888999998873 3333222 1 23345 888888887765555444332
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc--cchhccCCCCc
Q 018079 196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA--LPDYLLQMTVL 273 (361)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L 273 (361)
. .+++|+.|.+.+|..+++... ......+++|++|++++|..++. +.....++++|
T Consensus 266 ~------------------~c~~L~~L~l~~c~~lt~~gl----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l 323 (482)
T KOG1947|consen 266 S------------------RCPNLETLSLSNCSNLTDEGL----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL 323 (482)
T ss_pred h------------------hCCCcceEccCCCCccchhHH----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch
Confidence 2 478999999888887654444 34556889999999999877643 33333446666
Q ss_pred ceEeeccC---CCcccC--------C--cccccccCCCCCccEEEEecCC
Q 018079 274 QNLRIFFC---ENMEEL--------P--ILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 274 ~~L~l~~c---~~l~~l--------p--~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
+.+.+..+ ..++.+ . .+..+.+.+++.++.+.+..|.
T Consensus 324 ~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 324 RELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred hhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 66554443 233221 1 2444444555555555555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=1.8e-06 Score=83.74 Aligned_cols=133 Identities=26% Similarity=0.230 Sum_probs=65.8
Q ss_pred CccCCCccccceecceeeecCCCCCcccccc--eeceeEEcCCCCCCChHHHHHhhcCCCC---CCceEEEEecCCCCCC
Q 018079 16 PIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRGECSIEGLCNVSHVDEAERLQLSNKK---NLLRLHLQFGGKDEDW 90 (361)
Q Consensus 16 P~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~~l~l~~l~~~~~~~~~~~~~l~~l~---~L~~L~l~~~~~~~~~ 90 (361)
|-.|..+.+||.|.+..|... ...++.+|+ |++-++...++.+..+.......+++-. .|..-+.++|.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~-~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~----- 175 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS-TAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR----- 175 (1096)
T ss_pred CceeccccceeeEEecCcchh-hhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-----
Confidence 556777888888888666655 444555554 4422233333333322222222222211 23333444443
Q ss_pred cchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCC
Q 018079 91 RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQL 170 (361)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l 170 (361)
...+-+++.-++.++.|++++|....+. .+..+++|++|+++++ .+..+|.+
T Consensus 176 --------------------------L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l 227 (1096)
T KOG1859|consen 176 --------------------------LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQL 227 (1096)
T ss_pred --------------------------HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhcccccc
Confidence 2222334444555666666666544433 4455666666666663 45555554
Q ss_pred CCCc--cceEeccc
Q 018079 171 GKLP--LEKLQLKN 182 (361)
Q Consensus 171 ~~l~--L~~L~l~~ 182 (361)
+.-. |..|.+.+
T Consensus 228 ~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 228 SMVGCKLQLLNLRN 241 (1096)
T ss_pred chhhhhheeeeecc
Confidence 4333 55555554
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.42 E-value=7.3e-05 Score=66.86 Aligned_cols=198 Identities=19% Similarity=0.164 Sum_probs=117.8
Q ss_pred HhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-
Q 018079 67 RLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK- 145 (361)
Q Consensus 67 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~- 145 (361)
...+.++++|+.++++.|....- . ...+-+.+..+..|++|.+.+|+.-....
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~------g--------------------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~ 138 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPK------G--------------------IRGLEELLSSCTDLEELYLNNCGLGPEAGG 138 (382)
T ss_pred HHHHhcCCceeEeeccccccCcc------c--------------------hHHHHHHHHhccCHHHHhhhcCCCChhHHH
Confidence 34577888999999998876541 0 34445556778899999999987543211
Q ss_pred -------------hhhcCccCCeeeecCCCCCCCCCC------CCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079 146 -------------WLTSLANLRELNLSLCFNCEHLPQ------LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205 (361)
Q Consensus 146 -------------~~~~l~~L~~L~l~~~~~~~~l~~------l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 205 (361)
-++.-++|+.+....+ .+.+.+. +...| |+.+.+.. +.|..-.......
T Consensus 139 ~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~e--------- 207 (382)
T KOG1909|consen 139 RLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAE--------- 207 (382)
T ss_pred HHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHH---------
Confidence 1124567888887774 5554443 44567 88887764 2233222111111
Q ss_pred CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-----chhc-cCCCCcceEeec
Q 018079 206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-----PDYL-LQMTVLQNLRIF 279 (361)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----~~~~-~~l~~L~~L~l~ 279 (361)
.+..+|+|+.|+|.+..--..-...+ ...+..+++|+.|++.+|. ++.- ..-+ ...|+|+.+.+.
T Consensus 208 ------al~~~~~LevLdl~DNtft~egs~~L--akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 208 ------ALEHCPHLEVLDLRDNTFTLEGSVAL--AKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred ------HHHhCCcceeeecccchhhhHHHHHH--HHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccC
Confidence 15578999999998732111111111 2345578899999999994 4321 1112 237899999998
Q ss_pred cCCCcccCC-cccccccCCCCCccEEEEecCCC
Q 018079 280 FCENMEELP-ILEDHRTTDIPRLSSLRIGYCPK 311 (361)
Q Consensus 280 ~c~~l~~lp-~L~~L~l~~l~~L~~L~l~~c~~ 311 (361)
++ .++.=. .--...+...+.|++|++.+|..
T Consensus 279 gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 279 GN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 85 222100 00001233367888888888654
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=0.00011 Score=73.78 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=73.9
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccc
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHR 294 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~ 294 (361)
.||+|++|.+.+..-..+. + .....+||+|..|+|+++ +++.+ .++.++++|+.|.+.+. .+++...+. +
T Consensus 146 ~LPsL~sL~i~~~~~~~~d-F----~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~--~ 215 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDD-F----SQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNL-EFESYQDLI--D 215 (699)
T ss_pred hCcccceEEecCceecchh-H----HHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCC-CCCchhhHH--H
Confidence 6899999999984322222 1 123458999999999997 56666 68888999999999874 333333222 3
Q ss_pred cCCCCCccEEEEecCCCCCc--cc----cccCCCCCCCeEEEeCCc
Q 018079 295 TTDIPRLSSLRIGYCPKLKV--LP----DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 295 l~~l~~L~~L~l~~c~~l~~--l~----~~l~~l~~L~~L~l~~c~ 334 (361)
+-++++|+.||++.-.+... +. +.-.-+|.|+.||.++-.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 44578899999986444322 11 112347889999988654
No 51
>PLN03150 hypothetical protein; Provisional
Probab=97.28 E-value=0.00061 Score=68.30 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=73.6
Q ss_pred ccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCC
Q 018079 219 LKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDI 298 (361)
Q Consensus 219 L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l 298 (361)
++.|+|.++.--..++. .+..+++|+.|+++++.--..+|..+..+++|+.|+++++.--..+|. .++++
T Consensus 420 v~~L~L~~n~L~g~ip~------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE----SLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCH------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch----HHhcC
Confidence 56667766432222322 455788889998888643347787888888899999888655456664 56678
Q ss_pred CCccEEEEecCCCCCccccccCCC-CCCCeEEEeCCccc
Q 018079 299 PRLSSLRIGYCPKLKVLPDCLLRT-TTLQKLTIWGCPLL 336 (361)
Q Consensus 299 ~~L~~L~l~~c~~l~~l~~~l~~l-~~L~~L~l~~c~~l 336 (361)
++|+.|++++|.....+|..+... .++..+++.+++.+
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 889999998876656788666542 45667777777643
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.22 E-value=0.00024 Score=44.30 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=30.4
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCccccc
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRL 45 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L 45 (361)
|++|++++| .++.+|+++++|++|++|++ ..+.+..+
T Consensus 3 L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l-------~~N~i~~i 39 (44)
T PF12799_consen 3 LEELDLSNN-QITDLPPELSNLPNLETLNL-------SNNPISDI 39 (44)
T ss_dssp -SEEEETSS-S-SSHGGHGTTCTTSSEEEE-------TSSCCSBE
T ss_pred ceEEEccCC-CCcccCchHhCCCCCCEEEe-------cCCCCCCC
Confidence 789999999 99999999999999999999 55555544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.12 E-value=0.0006 Score=42.47 Aligned_cols=41 Identities=32% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC
Q 018079 128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ 169 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~ 169 (361)
++|++|+++++....+|+.++.+++|+.|+++++ .+.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4688899998888888887888999999999886 5655554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.0018 Score=53.90 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=80.4
Q ss_pred cEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCC
Q 018079 131 EELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSS 208 (361)
Q Consensus 131 ~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 208 (361)
+.+++.+..+...-. ++ ...+...++++++ .+..++.+..++ |++|.+++ +.|+.+.+...
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~-------------- 84 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLD-------------- 84 (233)
T ss_pred cccccccccccchhh-ccccccccceeccccc-chhhcccCCCccccceEEecC-Ccceeeccchh--------------
Confidence 345555554422211 22 3456778888885 677777777888 99999986 66788776542
Q ss_pred CCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch----hccCCCCcceEeecc
Q 018079 209 SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----YLLQMTVLQNLRIFF 280 (361)
Q Consensus 209 ~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~ 280 (361)
..+|+|++|.+.+ +++.++.. ...+..||+|++|.+-+.+ ++.... .+..+|+|+.|++.+
T Consensus 85 -----~~~p~l~~L~Ltn-Nsi~~l~d----l~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 85 -----TFLPNLKTLILTN-NSIQELGD----LDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -----hhccccceEEecC-cchhhhhh----cchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 2678999999987 45555544 4556689999999998843 333221 234477777777765
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.05 E-value=9.9e-05 Score=70.34 Aligned_cols=111 Identities=23% Similarity=0.283 Sum_probs=75.7
Q ss_pred hHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccc
Q 018079 117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLG 195 (361)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~ 195 (361)
.......+..+.+|..|++.++....+...+..+++|++|+++++ .++.+..+..++ |+.|++.++ .+..+..
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N-~i~~~~~---- 157 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGN-LISDISG---- 157 (414)
T ss_pred hhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccC-cchhccC----
Confidence 344455678888899999998887666654677889999999984 788888888888 999998874 3554432
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEec
Q 018079 196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSS 256 (361)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 256 (361)
+..+++|+.+++.++. ...+.. .. ...+.+++.+.+.+
T Consensus 158 -----------------~~~l~~L~~l~l~~n~-i~~ie~----~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 158 -----------------LESLKSLKLLDLSYNR-IVDIEN----DE-LSELISLEELDLGG 195 (414)
T ss_pred -----------------CccchhhhcccCCcch-hhhhhh----hh-hhhccchHHHhccC
Confidence 2346777777777643 222211 00 24677777777766
No 56
>PLN03150 hypothetical protein; Provisional
Probab=96.89 E-value=0.0015 Score=65.48 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=67.8
Q ss_pred ccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeE
Q 018079 249 LSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKL 328 (361)
Q Consensus 249 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L 328 (361)
++.|++.++.--..+|..+..+++|+.|+++++.--..+|. .++.+++|+.|++++|.....+|+.+.++++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 67788877644347888889999999999999755456775 56779999999999976666899999999999999
Q ss_pred EEeCCc
Q 018079 329 TIWGCP 334 (361)
Q Consensus 329 ~l~~c~ 334 (361)
++++|.
T Consensus 496 ~Ls~N~ 501 (623)
T PLN03150 496 NLNGNS 501 (623)
T ss_pred ECcCCc
Confidence 999885
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.84 E-value=0.00091 Score=67.32 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=37.1
Q ss_pred CCCCCccEEEecccCCCC--CchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccc
Q 018079 125 QPPLNVEELWIIFYGGNI--FPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNL 183 (361)
Q Consensus 125 ~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~ 183 (361)
..+|.|++|.+.+..... +.....+|++|..||++++ ++..+..+.+++ |+.|.+.+.
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNL 205 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCC
Confidence 345788888877644321 3333347888888888885 566665666777 777766653
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0013 Score=57.86 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=87.6
Q ss_pred HHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhc-CCCCCccEEEecccCCC-
Q 018079 64 EAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEAL-QPPLNVEELWIIFYGGN- 141 (361)
Q Consensus 64 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~- 141 (361)
..+...+.+|++|+.|+++.|...++ ...+ .+..+|+.|-+.|..-.
T Consensus 87 seI~~ile~lP~l~~LNls~N~L~s~-------------------------------I~~lp~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 87 SEIGAILEQLPALTTLNLSCNSLSSD-------------------------------IKSLPLPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred HHHHHHHhcCccceEeeccCCcCCCc-------------------------------cccCcccccceEEEEEcCCCCCh
Confidence 34556688999999999999986542 1222 35678888888875432
Q ss_pred -CCchhhhcCccCCeeeecCCCCCC----CCCCCCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCccc
Q 018079 142 -IFPKWLTSLANLRELNLSLCFNCE----HLPQLGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVI 214 (361)
Q Consensus 142 -~~p~~~~~l~~L~~L~l~~~~~~~----~l~~l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (361)
...+.+..++.++.|.++.++ .. +-...... + +++++..+|.-...... ... -.
T Consensus 136 ~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--~~l----------------~r 196 (418)
T KOG2982|consen 136 TQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--NKL----------------SR 196 (418)
T ss_pred hhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHH--HhH----------------Hh
Confidence 133444567777777777651 11 11112222 2 66666665531111000 000 11
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch--hccCCCCcceEeeccCCCcc
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD--YLLQMTVLQNLRIFFCENME 285 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~ 285 (361)
.||++..+-+..|+ +..... +.+...+|.+-.|++.. +++.++.. .+..++.|..|.+++.+-..
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~----ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESS----EKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCc-ccchhh----cccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccc
Confidence 46777666666653 222222 34455666666665544 23333321 23446666666666544443
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.95 E-value=0.002 Score=61.51 Aligned_cols=115 Identities=28% Similarity=0.235 Sum_probs=60.2
Q ss_pred ecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEec
Q 018079 5 LNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFG 84 (361)
Q Consensus 5 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 84 (361)
+++.+ .+...-..++.+++|..+++ ..+.+..+. . .+..+.+|+.|+++.|
T Consensus 78 ~l~~n-~i~~~~~~l~~~~~l~~l~l-------~~n~i~~i~---~------------------~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 78 NLRQN-LIAKILNHLSKLKSLEALDL-------YDNKIEKIE---N------------------LLSSLVNLQVLDLSFN 128 (414)
T ss_pred ccchh-hhhhhhcccccccceeeeec-------cccchhhcc---c------------------chhhhhcchheecccc
Confidence 34444 44443334677788888888 444444432 0 0445667777777776
Q ss_pred CCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCC
Q 018079 85 GKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNC 164 (361)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 164 (361)
.... ...+..++.|+.|++.+|....+.. +..+..|+.+++.++ .+
T Consensus 129 ~I~~--------------------------------i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n-~i 174 (414)
T KOG0531|consen 129 KITK--------------------------------LEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYN-RI 174 (414)
T ss_pred cccc--------------------------------ccchhhccchhhheeccCcchhccC-CccchhhhcccCCcc-hh
Confidence 6433 2333444446666666665544332 233555666666654 33
Q ss_pred CCCCC--CCCCc-cceEeccc
Q 018079 165 EHLPQ--LGKLP-LEKLQLKN 182 (361)
Q Consensus 165 ~~l~~--l~~l~-L~~L~l~~ 182 (361)
..+.. ...+. ++.+.+.+
T Consensus 175 ~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 175 VDIENDELSELISLEELDLGG 195 (414)
T ss_pred hhhhhhhhhhccchHHHhccC
Confidence 33333 24444 55555554
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0052 Score=31.89 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.8
Q ss_pred CceeecCCCCcccccCccCCCc
Q 018079 1 MRSLLNFGTNSLKYMPIGISKL 22 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L 22 (361)
|++|++++| .++.+|+++++|
T Consensus 2 L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp ESEEEETSS-EESEEGTTTTT-
T ss_pred ccEEECCCC-cCEeCChhhcCC
Confidence 689999999 999999887764
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.0014 Score=57.28 Aligned_cols=103 Identities=27% Similarity=0.292 Sum_probs=69.3
Q ss_pred CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCccccccc
Q 018079 216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRT 295 (361)
Q Consensus 216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l 295 (361)
+.+.++|+.++| .+.++.. ...+|.|+.|.++- ++++++. .+..|+.|++|++.. +.|.++-.|+ ++
T Consensus 18 l~~vkKLNcwg~-~L~DIsi-------c~kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~--YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI-------CEKMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRK-NCIESLDELE--YL 84 (388)
T ss_pred HHHhhhhcccCC-CccHHHH-------HHhcccceeEEeec-cccccch-hHHHHHHHHHHHHHh-cccccHHHHH--HH
Confidence 557788888887 4665544 34688999999875 5676664 566789999999986 3444444333 56
Q ss_pred CCCCCccEEEEecCCCCCccc-----cccCCCCCCCeEEEe
Q 018079 296 TDIPRLSSLRIGYCPKLKVLP-----DCLLRTTTLQKLTIW 331 (361)
Q Consensus 296 ~~l~~L~~L~l~~c~~l~~l~-----~~l~~l~~L~~L~l~ 331 (361)
.++++|+.|++..+|=-..-+ ..+.-+|+|+.||=.
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 678999999998755433322 235567777776533
No 62
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.0065 Score=50.63 Aligned_cols=67 Identities=21% Similarity=0.421 Sum_probs=47.2
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc-hhccCCCCcceEeeccCCC
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP-DYLLQMTVLQNLRIFFCEN 283 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~ 283 (361)
+..++.++.|.+.+|..+.+|.. +..-+..++|+.|++++|+.+++-. .++..+++|+.|.+++.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L----~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCL----ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHH----HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 44678888888888888888876 3344467888888888888877542 2455567777776666433
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.76 E-value=0.038 Score=48.36 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=35.4
Q ss_pred hHHHHHhcCCCCCccEEEecccCC-CCCchh----hhcCccCCeeeecCCCCCCCC
Q 018079 117 DKQLLEALQPPLNVEELWIIFYGG-NIFPKW----LTSLANLRELNLSLCFNCEHL 167 (361)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~l~~~~~-~~~p~~----~~~l~~L~~L~l~~~~~~~~l 167 (361)
...+..++-++|+|+..+++++.. .++|.. +.+-..|.+|.+.+| +++.+
T Consensus 81 L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~ 135 (388)
T COG5238 81 LVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPI 135 (388)
T ss_pred HHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCcc
Confidence 334467788999999999997753 445543 447788999999987 44433
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.0033 Score=52.37 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=21.9
Q ss_pred ccccCCCccEEEEecCCCCCccch-hcc-CCCCcceEeeccCCCcc
Q 018079 242 NISIMPRLSSLEVSSCNKLKALPD-YLL-QMTVLQNLRIFFCENME 285 (361)
Q Consensus 242 ~~~~l~~L~~L~l~~c~~l~~l~~-~~~-~l~~L~~L~l~~c~~l~ 285 (361)
.+..++.++.|.+.+|.++.+... .++ -.++|+.|++++|+.|+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 344566666667766665543321 111 14455555555554443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.56 E-value=0.056 Score=45.25 Aligned_cols=91 Identities=23% Similarity=0.226 Sum_probs=62.5
Q ss_pred HHhcCCCCCccEEEecccCCCCCchhhh-cCccCCeeeecCC--CCCCCCCCCCCCc-cceEeccccccceeeccccccc
Q 018079 121 LEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLC--FNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGI 196 (361)
Q Consensus 121 ~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~--~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~ 196 (361)
...+..+++|.+|.+..+.+..+.+.+. -+++|+.|.+.++ ..+.++.++..+| |++|.+-+.+ ++.... ++.
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~--YR~ 133 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKN--YRL 133 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccC--cee
Confidence 4556777889999999998877666665 5677999999886 2334666688889 9999887643 222110 100
Q ss_pred CCCCCCCCCCCCCCCcccCCCCccEEEEcCCc
Q 018079 197 EESSEDGPSSSSSSPSVIAFPKLKSLEIDGMK 228 (361)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 228 (361)
- .+..+|+|++|+..+..
T Consensus 134 y--------------vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 134 Y--------------VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred E--------------EEEecCcceEeehhhhh
Confidence 0 04478999999987754
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.0015 Score=57.00 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=70.5
Q ss_pred CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079 127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205 (361)
Q Consensus 127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 205 (361)
+.+.+.|+.-||+...+ +....|+.|+.|.++-+ .+..+.++.++. |+.|++.. +.|..+.+-++
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRk-N~I~sldEL~Y----------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRK-NCIESLDELEY----------- 83 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHh-cccccHHHHHH-----------
Confidence 45677788777765433 23458999999999984 788888888888 99998875 44666665554
Q ss_pred CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEE
Q 018079 206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLE 253 (361)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 253 (361)
+.++|+|++|.|...+.......... ...+..+|+|+.|+
T Consensus 84 -------LknlpsLr~LWL~ENPCc~~ag~nYR-~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 -------LKNLPSLRTLWLDENPCCGEAGQNYR-RKVLRVLPNLKKLD 123 (388)
T ss_pred -------HhcCchhhhHhhccCCcccccchhHH-HHHHHHcccchhcc
Confidence 55889999999986443332221000 12345688888885
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.84 E-value=0.028 Score=48.77 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=6.7
Q ss_pred CCCCccEEEEcCCc
Q 018079 215 AFPKLKSLEIDGMK 228 (361)
Q Consensus 215 ~~~~L~~L~L~~~~ 228 (361)
.+++|..|++..|.
T Consensus 114 ~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 114 ELENLKSLDLFNCS 127 (260)
T ss_pred hhcchhhhhcccCC
Confidence 44445555554443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.54 E-value=0.037 Score=28.60 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=13.6
Q ss_pred CccEEEEecCCCCCccccccCC
Q 018079 300 RLSSLRIGYCPKLKVLPDCLLR 321 (361)
Q Consensus 300 ~L~~L~l~~c~~l~~l~~~l~~ 321 (361)
+|+.|++++| .++.+|+.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777776 66677765543
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.06 E-value=0.063 Score=47.07 Aligned_cols=200 Identities=20% Similarity=0.124 Sum_probs=110.4
Q ss_pred hHHHHHhcCCCCCccEEEecccCCCC-Cchhh----hcCccCCeeeecCCCCCC---CCC--------CCCCCc-cceEe
Q 018079 117 DKQLLEALQPPLNVEELWIIFYGGNI-FPKWL----TSLANLRELNLSLCFNCE---HLP--------QLGKLP-LEKLQ 179 (361)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~----~~l~~L~~L~l~~~~~~~---~l~--------~l~~l~-L~~L~ 179 (361)
.+.+.+.+..+..+..++++|+-+.+ -..|+ .+-.+|+..++++..--. .++ .+..+| |+..+
T Consensus 19 vk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 19 VKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred hhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 56667777778889999999876543 33343 355677777776542111 111 244567 77777
Q ss_pred ccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc-------cccccccCCCccEE
Q 018079 180 LKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT-------RKENISIMPRLSSL 252 (361)
Q Consensus 180 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~-------~~~~~~~l~~L~~L 252 (361)
+++..--...++..... ++....|++|.+.+|.--.....+++ .......-|.|+.+
T Consensus 99 LSDNAfg~~~~e~L~d~----------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 99 LSDNAFGSEFPEELGDL----------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred ccccccCcccchHHHHH----------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 77532111222211110 34567888888887542111111111 11223356778888
Q ss_pred EEecCCCCCccchh-----ccCCCCcceEeeccCCCcc--cCCcccccccCCCCCccEEEEecCCCCCc----cccccCC
Q 018079 253 EVSSCNKLKALPDY-----LLQMTVLQNLRIFFCENME--ELPILEDHRTTDIPRLSSLRIGYCPKLKV----LPDCLLR 321 (361)
Q Consensus 253 ~l~~c~~l~~l~~~-----~~~l~~L~~L~l~~c~~l~--~lp~L~~L~l~~l~~L~~L~l~~c~~l~~----l~~~l~~ 321 (361)
...+ +++..-|.. +..-..|+++.+... .++ .+..|-.+.+..+.+|+.|++.++..... +...+..
T Consensus 163 icgr-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 163 ICGR-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred Eecc-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 6655 455544322 122246777777652 221 12233334455588999999988533211 3355667
Q ss_pred CCCCCeEEEeCCc
Q 018079 322 TTTLQKLTIWGCP 334 (361)
Q Consensus 322 l~~L~~L~l~~c~ 334 (361)
++.|.+|.+.+|-
T Consensus 241 W~~lrEL~lnDCl 253 (388)
T COG5238 241 WNLLRELRLNDCL 253 (388)
T ss_pred cchhhhccccchh
Confidence 7888999998884
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.81 E-value=0.037 Score=43.47 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=38.5
Q ss_pred HhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchh
Q 018079 67 RLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW 146 (361)
Q Consensus 67 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 146 (361)
+..+.+..+|...+++.|...+.+. ....+++..++++++++....+|..
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~------------------------------kft~kf~t~t~lNl~~neisdvPeE 95 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPK------------------------------KFTIKFPTATTLNLANNEISDVPEE 95 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCH------------------------------HHhhccchhhhhhcchhhhhhchHH
Confidence 3446667788888888887543221 2223445556666666665556665
Q ss_pred hhcCccCCeeeecCC
Q 018079 147 LTSLANLRELNLSLC 161 (361)
Q Consensus 147 ~~~l~~L~~L~l~~~ 161 (361)
+..++.|+.|++..+
T Consensus 96 ~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFN 110 (177)
T ss_pred HhhhHHhhhcccccC
Confidence 556666666666554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.45 E-value=0.15 Score=24.48 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=4.2
Q ss_pred CccEEEEecC
Q 018079 300 RLSSLRIGYC 309 (361)
Q Consensus 300 ~L~~L~l~~c 309 (361)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.33 E-value=0.028 Score=44.09 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=56.1
Q ss_pred HHHHHhcCCCCCccEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeeccc
Q 018079 118 KQLLEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNE 192 (361)
Q Consensus 118 ~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~ 192 (361)
......+.....|+..+++++....+|..+. .++.++.|++..+ .+.++|. +..+| |+.++++.. .+...++.
T Consensus 43 ~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N-~l~~~p~v 118 (177)
T KOG4579|consen 43 ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFN-PLNAEPRV 118 (177)
T ss_pred HHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccC-ccccchHH
Confidence 3444556666788889999999888887766 6778999999984 7888887 88999 999999864 34554543
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.99 E-value=0.091 Score=45.66 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=65.5
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCC-CC-CccchhccCCCCcceEeeccCCCcccCCcccc
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCN-KL-KALPDYLLQMTVLQNLRIFFCENMEELPILED 292 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~-~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~ 292 (361)
.+..|+.|++.++.-.+ ...+-.+|+|+.|.+++.. +. ..++.-+..+++|+++++++. .++.+.+++.
T Consensus 41 ~~~~le~ls~~n~gltt--------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p 111 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP 111 (260)
T ss_pred cccchhhhhhhccceee--------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch
Confidence 56778888777654222 1123357889999998741 11 133333445799999999983 4433332221
Q ss_pred cccCCCCCccEEEEecCCCCCccc----cccCCCCCCCeEEEeCCcc
Q 018079 293 HRTTDIPRLSSLRIGYCPKLKVLP----DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 293 L~l~~l~~L~~L~l~~c~~l~~l~----~~l~~l~~L~~L~l~~c~~ 335 (361)
+..+++|..|++.+|.-.. +- ..+.-+++|++++-..+..
T Consensus 112 --l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 112 --LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred --hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 2235678888888876543 21 3455678888887776643
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.30 E-value=4.4 Score=31.08 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=54.4
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILE 291 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~ 291 (361)
+.++.+|+.+.+.. .+..+.. ..+..+++|+.+.+.. .+..++... ..+++++.+.+.. .+..++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~-----~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~--- 73 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGE-----NAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIG--- 73 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-T-----TTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE----
T ss_pred HhCCCCCCEEEECC--CeeEeCh-----hhcccccccccccccc--cccccceeeeecccccccccccc--cccccc---
Confidence 44677888888863 3444332 4566788899998865 467776654 4476899988864 333333
Q ss_pred ccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeC
Q 018079 292 DHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWG 332 (361)
Q Consensus 292 ~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~ 332 (361)
.-.+.++++|+.+.+.. .+..++ ..+.+. +|+.+.+.+
T Consensus 74 ~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 22455578888888853 466666 456666 788887764
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.73 E-value=0.43 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=13.5
Q ss_pred CCCCCeEEEeCCccchhh
Q 018079 322 TTTLQKLTIWGCPLLENR 339 (361)
Q Consensus 322 l~~L~~L~l~~c~~l~~~ 339 (361)
+++|++|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467888888888887754
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.88 E-value=4.7 Score=30.90 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=48.7
Q ss_pred cccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cc
Q 018079 241 ENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DC 318 (361)
Q Consensus 241 ~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~ 318 (361)
..+..+++|+.+.+.+ .++.++... ..+++|+.+.+.. .+..++ .-.+.++++++.+.+.+ .+..++ ..
T Consensus 6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~---~~~F~~~~~l~~i~~~~--~~~~i~~~~ 76 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIG---DNAFSNCKSLESITFPN--NLKSIGDNA 76 (129)
T ss_dssp TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE----TTTTTT-TT-EEEEETS--TT-EE-TTT
T ss_pred HHHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccc---eeeeecccccccccccc--ccccccccc
Confidence 3456788999999864 466776654 4577999999876 244333 33566788899999964 566666 45
Q ss_pred cCCCCCCCeEEEeC
Q 018079 319 LLRTTTLQKLTIWG 332 (361)
Q Consensus 319 l~~l~~L~~L~l~~ 332 (361)
+..+++|+.+.+..
T Consensus 77 F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TTECEEEETT
T ss_pred ccccccccccccCc
Confidence 67799999999954
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=68.91 E-value=4.8 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=12.8
Q ss_pred CCccEEEecccCCCCCchhh
Q 018079 128 LNVEELWIIFYGGNIFPKWL 147 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~ 147 (361)
++|++|++.+|....+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45677777777666666543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=68.91 E-value=4.8 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=12.8
Q ss_pred CCccEEEecccCCCCCchhh
Q 018079 128 LNVEELWIIFYGGNIFPKWL 147 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~ 147 (361)
++|++|++.+|....+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45677777777666666543
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.01 E-value=6 Score=21.33 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.7
Q ss_pred CceeecCCCCcccccCc
Q 018079 1 MRSLLNFGTNSLKYMPI 17 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~ 17 (361)
|++|++++| .++.+|+
T Consensus 4 L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 4 LKELNVSNN-QLTSLPE 19 (26)
T ss_pred cceeecCCC-ccccCcc
Confidence 678999988 8999886
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=45.86 E-value=14 Score=18.96 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=8.3
Q ss_pred CCCCCeEEEeCCc
Q 018079 322 TTTLQKLTIWGCP 334 (361)
Q Consensus 322 l~~L~~L~l~~c~ 334 (361)
+++|+.|++++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3678888898887
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.49 E-value=50 Score=32.44 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=36.1
Q ss_pred ccCCCccEEEEecCCCCC---ccchhccCCCCcceEeeccCC-CcccCCcccccccCCCCCccEEEEecCCCCCcc
Q 018079 244 SIMPRLSSLEVSSCNKLK---ALPDYLLQMTVLQNLRIFFCE-NMEELPILEDHRTTDIPRLSSLRIGYCPKLKVL 315 (361)
Q Consensus 244 ~~l~~L~~L~l~~c~~l~---~l~~~~~~l~~L~~L~l~~c~-~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l 315 (361)
.++|.+..+.+++ +++. .+..-....|+|++|+|++.. .+..-+ ++.--....|++|.+.|+|.-+.+
T Consensus 215 ~n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~---el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES---ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchh---hhhhhcCCCHHHeeecCCccccch
Confidence 3677777777766 3343 333333457788888887641 111111 111111345777777776655443
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=20.61 E-value=65 Score=17.35 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=7.7
Q ss_pred CceeecCCCCcc
Q 018079 1 MRSLLNFGTNSL 12 (361)
Q Consensus 1 L~~L~l~~~~~l 12 (361)
|++|++++| .+
T Consensus 4 L~~LdL~~N-~i 14 (28)
T smart00368 4 LRELDLSNN-KL 14 (28)
T ss_pred cCEEECCCC-CC
Confidence 577788877 44
Done!