Query 018079
Match_columns 361
No_of_seqs 173 out of 1488
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 9.5E-22 3.2E-26 199.8 11.9 274 68-358 436-766 (768)
2 4fmz_A Internalin; leucine ric 99.8 4.1E-20 1.4E-24 170.2 19.4 276 1-335 46-323 (347)
3 4fmz_A Internalin; leucine ric 99.8 4.4E-20 1.5E-24 170.0 16.9 275 1-334 68-344 (347)
4 3t6q_A CD180 antigen; protein- 99.8 1.7E-19 5.8E-24 178.4 20.7 32 1-33 83-115 (606)
5 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-20 7.2E-25 184.9 14.0 194 128-334 285-508 (606)
6 3t6q_A CD180 antigen; protein- 99.8 3.1E-19 1.1E-23 176.5 22.3 40 69-108 124-163 (606)
7 3rgz_A Protein brassinosteroid 99.8 1.8E-20 6.3E-25 190.4 13.1 304 1-336 320-717 (768)
8 4fcg_A Uncharacterized protein 99.8 2E-20 6.9E-25 171.2 11.8 200 70-332 100-310 (328)
9 1o6v_A Internalin A; bacterial 99.8 5.1E-19 1.7E-23 169.6 21.0 298 1-335 70-387 (466)
10 2id5_A Lingo-1, leucine rich r 99.8 9.9E-20 3.4E-24 175.0 15.9 289 1-335 34-332 (477)
11 4eco_A Uncharacterized protein 99.8 5.7E-20 1.9E-24 182.9 14.4 315 1-335 208-599 (636)
12 4ecn_A Leucine-rich repeat pro 99.8 1.2E-19 4.1E-24 184.8 16.9 314 1-335 450-818 (876)
13 4fcg_A Uncharacterized protein 99.8 7.5E-20 2.6E-24 167.4 13.4 212 72-338 79-292 (328)
14 4eco_A Uncharacterized protein 99.8 1.7E-19 5.9E-24 179.4 16.8 134 66-205 239-385 (636)
15 3v47_A TOLL-like receptor 5B a 99.8 3E-19 1E-23 170.4 17.3 110 213-335 295-407 (455)
16 1o6v_A Internalin A; bacterial 99.8 2.1E-18 7E-23 165.4 22.1 298 1-335 48-365 (466)
17 3o6n_A APL1; leucine-rich repe 99.8 4.8E-19 1.7E-23 165.8 14.7 298 1-335 47-351 (390)
18 2id5_A Lingo-1, leucine rich r 99.8 2E-18 6.9E-23 165.9 18.6 284 3-334 15-307 (477)
19 4ecn_A Leucine-rich repeat pro 99.8 2E-19 7E-24 183.1 11.2 305 1-336 493-840 (876)
20 3bz5_A Internalin-J, INLJ; leu 99.8 2.2E-18 7.6E-23 164.6 17.5 288 1-334 44-350 (457)
21 2z63_A TOLL-like receptor 4, v 99.8 2.1E-19 7.1E-24 176.4 10.4 197 125-334 279-505 (570)
22 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-18 4.9E-23 168.7 16.1 138 171-335 321-480 (520)
23 2z81_A CD282 antigen, TOLL-lik 99.8 5.6E-19 1.9E-23 172.6 12.2 115 213-334 357-508 (549)
24 3vq2_A TLR4, TOLL-like recepto 99.8 5.4E-19 1.9E-23 174.8 12.2 279 11-335 273-557 (606)
25 1ogq_A PGIP-2, polygalacturona 99.8 5.6E-19 1.9E-23 160.5 8.4 183 121-337 118-305 (313)
26 3oja_B Anopheles plasmodium-re 99.8 3.7E-18 1.3E-22 168.7 14.9 298 1-335 53-357 (597)
27 3zyi_A Leucine-rich repeat-con 99.8 1.1E-17 3.9E-22 159.6 17.1 238 3-334 58-301 (452)
28 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-17 3.6E-22 162.6 16.5 304 2-334 3-455 (520)
29 3zyj_A Leucine-rich repeat-con 99.8 1.5E-17 5.1E-22 158.3 17.2 238 3-334 47-290 (440)
30 3v47_A TOLL-like receptor 5B a 99.8 1.2E-17 4.3E-22 159.2 16.2 247 69-335 74-383 (455)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.3E-18 1.8E-22 166.4 13.9 115 215-335 375-509 (562)
32 2ft3_A Biglycan; proteoglycan, 99.8 2.7E-17 9.2E-22 150.6 17.6 88 244-333 238-330 (332)
33 1xku_A Decorin; proteoglycan, 99.7 6.7E-17 2.3E-21 147.8 19.2 172 128-335 121-305 (330)
34 1xku_A Decorin; proteoglycan, 99.7 9E-17 3.1E-21 146.9 19.9 285 1-333 33-329 (330)
35 2z81_A CD282 antigen, TOLL-lik 99.7 8.9E-18 3E-22 164.1 13.5 128 1-140 28-160 (549)
36 2z66_A Variable lymphocyte rec 99.7 1.7E-17 5.8E-22 150.1 13.7 245 2-335 10-260 (306)
37 2z63_A TOLL-like receptor 4, v 99.7 7E-18 2.4E-22 165.5 11.8 222 96-335 280-530 (570)
38 2z80_A TOLL-like receptor 2, v 99.7 8.1E-18 2.8E-22 155.4 11.6 180 124-335 120-313 (353)
39 1ziw_A TOLL-like receptor 3; i 99.7 1.8E-16 6E-21 158.9 20.7 268 1-281 250-546 (680)
40 1ziw_A TOLL-like receptor 3; i 99.7 5.3E-17 1.8E-21 162.7 16.2 313 1-334 27-364 (680)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.1E-16 3.8E-21 156.9 17.5 114 214-335 350-485 (562)
42 3o6n_A APL1; leucine-rich repe 99.7 3.6E-17 1.2E-21 153.1 11.9 257 1-310 71-350 (390)
43 3g06_A SSPH2 (leucine-rich rep 99.7 3.7E-16 1.3E-20 154.1 18.8 250 1-336 42-297 (622)
44 3j0a_A TOLL-like receptor 5; m 99.7 2.2E-16 7.4E-21 162.1 17.7 32 1-32 50-82 (844)
45 3oja_B Anopheles plasmodium-re 99.7 1.3E-16 4.4E-21 157.6 12.3 258 1-311 77-357 (597)
46 3o53_A Protein LRIM1, AGAP0063 99.7 9.5E-18 3.3E-22 152.6 3.9 176 126-337 97-276 (317)
47 1wwl_A Monocyte differentiatio 99.7 5.5E-17 1.9E-21 147.3 8.7 204 70-335 91-308 (312)
48 2z80_A TOLL-like receptor 2, v 99.7 6.6E-16 2.2E-20 142.5 14.9 244 4-335 36-289 (353)
49 3j0a_A TOLL-like receptor 5; m 99.7 4.1E-16 1.4E-20 160.0 14.8 170 1-183 26-214 (844)
50 1jl5_A Outer protein YOPM; leu 99.7 1.5E-15 5.2E-20 144.8 17.7 254 1-334 133-407 (454)
51 1jl5_A Outer protein YOPM; leu 99.7 1.4E-15 4.7E-20 145.1 16.4 207 70-335 149-369 (454)
52 3bz5_A Internalin-J, INLJ; leu 99.7 7E-16 2.4E-20 147.3 14.0 207 16-281 35-243 (457)
53 3zyi_A Leucine-rich repeat-con 99.6 1.2E-15 4.1E-20 145.6 14.5 219 1-310 77-301 (452)
54 2z66_A Variable lymphocyte rec 99.6 1E-15 3.5E-20 138.3 13.2 222 1-311 30-260 (306)
55 3zyj_A Leucine-rich repeat-con 99.6 1.5E-15 5.3E-20 144.3 14.7 218 1-309 66-289 (440)
56 1ogq_A PGIP-2, polygalacturona 99.6 5.4E-16 1.8E-20 140.8 10.9 205 69-336 71-281 (313)
57 2ft3_A Biglycan; proteoglycan, 99.6 7.4E-15 2.5E-19 134.3 17.5 240 69-359 73-327 (332)
58 1ozn_A Reticulon 4 receptor; N 99.6 3.5E-15 1.2E-19 133.4 13.0 181 122-335 50-237 (285)
59 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-14 4.6E-19 143.5 17.7 131 1-142 54-187 (635)
60 2ast_B S-phase kinase-associat 99.6 2.3E-16 7.7E-21 144.4 4.1 166 119-309 109-282 (336)
61 1h6u_A Internalin H; cell adhe 99.6 6.6E-15 2.3E-19 133.3 13.7 190 72-335 39-229 (308)
62 3o53_A Protein LRIM1, AGAP0063 99.6 1.4E-15 4.7E-20 138.3 9.0 228 62-336 22-250 (317)
63 1ozn_A Reticulon 4 receptor; N 99.6 1E-14 3.4E-19 130.4 14.2 218 2-311 14-237 (285)
64 3oja_A Leucine-rich immune mol 99.6 8.4E-16 2.9E-20 148.0 7.5 169 127-331 98-270 (487)
65 4g8a_A TOLL-like receptor 4; l 99.6 4.1E-14 1.4E-18 140.0 18.6 111 213-334 465-578 (635)
66 2ast_B S-phase kinase-associat 99.6 2.8E-16 9.5E-21 143.8 0.9 182 123-333 88-282 (336)
67 2xwt_C Thyrotropin receptor; s 99.6 6.4E-15 2.2E-19 128.3 9.4 179 123-335 50-238 (239)
68 3ogk_B Coronatine-insensitive 99.6 1E-15 3.5E-20 150.8 4.7 204 124-334 266-524 (592)
69 1h6u_A Internalin H; cell adhe 99.6 4.2E-14 1.4E-18 128.0 14.7 152 124-316 81-233 (308)
70 3ogk_B Coronatine-insensitive 99.6 1.9E-15 6.6E-20 148.8 6.3 177 1-182 75-279 (592)
71 2xwt_C Thyrotropin receptor; s 99.6 1.6E-14 5.6E-19 125.6 11.1 208 9-310 20-237 (239)
72 1z7x_W Ribonuclease inhibitor; 99.6 1.6E-15 5.6E-20 144.7 5.0 239 72-335 140-410 (461)
73 4ay9_X Follicle-stimulating ho 99.6 3.9E-14 1.3E-18 130.5 14.1 237 2-332 12-255 (350)
74 1p9a_G Platelet glycoprotein I 99.6 2.3E-14 7.9E-19 128.5 12.1 199 70-335 6-207 (290)
75 1p9a_G Platelet glycoprotein I 99.6 6.6E-14 2.2E-18 125.6 15.1 191 1-281 12-205 (290)
76 2p1m_B Transport inhibitor res 99.5 9.9E-16 3.4E-20 150.9 3.1 113 216-336 371-519 (594)
77 3oja_A Leucine-rich immune mol 99.5 1E-14 3.4E-19 140.4 9.3 225 65-336 25-250 (487)
78 1z7x_W Ribonuclease inhibitor; 99.5 8.9E-16 3.1E-20 146.5 0.9 116 215-335 225-382 (461)
79 2o6q_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 120.9 14.3 174 128-334 37-216 (270)
80 2p1m_B Transport inhibitor res 99.5 1.8E-15 6.1E-20 149.0 0.9 306 1-335 132-493 (594)
81 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6E-20 141.4 0.5 260 11-336 20-316 (386)
82 2z62_A TOLL-like receptor 4, v 99.5 1E-13 3.5E-18 123.2 11.6 179 123-334 47-235 (276)
83 3g06_A SSPH2 (leucine-rich rep 99.5 3.4E-13 1.2E-17 132.9 16.1 239 1-317 63-302 (622)
84 2o6q_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 118.8 14.3 57 125-182 82-142 (270)
85 4ay9_X Follicle-stimulating ho 99.5 2.2E-13 7.5E-18 125.5 12.7 216 1-308 32-255 (350)
86 3rfs_A Internalin B, repeat mo 99.5 8.1E-13 2.8E-17 117.2 15.6 176 126-335 39-217 (272)
87 1wwl_A Monocyte differentiatio 99.5 2.6E-14 8.8E-19 129.6 6.0 183 71-310 118-307 (312)
88 2z62_A TOLL-like receptor 4, v 99.5 2E-13 6.8E-18 121.3 10.9 214 4-310 12-235 (276)
89 3rfs_A Internalin B, repeat mo 99.5 2.8E-13 9.5E-18 120.3 11.0 163 123-324 80-247 (272)
90 1h6t_A Internalin B; cell adhe 99.4 1.9E-12 6.5E-17 116.1 14.3 166 127-334 45-211 (291)
91 4ezg_A Putative uncharacterize 99.4 8.1E-13 2.8E-17 111.4 11.2 149 149-334 42-192 (197)
92 1h6t_A Internalin B; cell adhe 99.4 1.3E-12 4.6E-17 117.0 10.9 167 71-309 43-210 (291)
93 4glp_A Monocyte differentiatio 99.4 9.2E-13 3.1E-17 119.2 9.5 179 125-335 114-306 (310)
94 4ezg_A Putative uncharacterize 99.4 5.5E-12 1.9E-16 106.2 12.7 148 127-310 43-192 (197)
95 3m19_A Variable lymphocyte rec 99.4 1.3E-11 4.6E-16 108.0 15.2 173 128-335 14-191 (251)
96 1m9s_A Internalin B; cell inva 99.4 1.6E-12 5.6E-17 127.8 10.3 148 123-310 60-208 (605)
97 2ca6_A RAN GTPase-activating p 99.3 3.6E-13 1.2E-17 125.6 4.2 261 1-333 34-340 (386)
98 4glp_A Monocyte differentiatio 99.3 1.4E-12 4.6E-17 118.0 7.3 184 71-310 114-305 (310)
99 1m9s_A Internalin B; cell inva 99.3 7.5E-12 2.6E-16 123.1 12.8 169 126-336 41-210 (605)
100 3goz_A Leucine-rich repeat-con 99.3 1.2E-12 4E-17 121.2 6.0 259 3-334 2-295 (362)
101 3m19_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 107.3 11.2 58 124-182 79-140 (251)
102 3cvr_A Invasion plasmid antige 99.2 3.5E-11 1.2E-15 117.3 11.5 161 128-336 80-243 (571)
103 1xeu_A Internalin C; cellular 99.2 3.5E-11 1.2E-15 106.1 9.0 144 125-309 38-182 (263)
104 3cvr_A Invasion plasmid antige 99.2 1.6E-10 5.5E-15 112.6 12.2 48 129-182 121-169 (571)
105 3e6j_A Variable lymphocyte rec 99.1 8.3E-10 2.8E-14 95.2 13.0 147 130-310 21-170 (229)
106 1xeu_A Internalin C; cellular 99.1 2.9E-10 1E-14 100.2 9.5 145 70-281 37-182 (263)
107 3goz_A Leucine-rich repeat-con 99.1 5.2E-11 1.8E-15 110.0 4.7 216 66-334 14-264 (362)
108 1dce_A Protein (RAB geranylger 99.1 1.3E-12 4.5E-17 127.7 -6.5 102 218-335 442-545 (567)
109 2xot_A Amphoterin-induced prot 99.1 5.8E-10 2E-14 102.9 11.1 174 130-335 20-201 (361)
110 2o6s_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 94.8 9.6 159 127-324 27-190 (208)
111 2o6s_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 96.2 8.0 58 124-182 72-133 (208)
112 2ell_A Acidic leucine-rich nuc 99.0 8.8E-10 3E-14 90.0 9.9 130 125-281 21-157 (168)
113 2v9t_B SLIT homolog 2 protein 99.0 2.8E-09 9.4E-14 91.3 12.8 85 244-334 77-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.0 5.2E-09 1.8E-13 89.6 14.5 86 243-334 77-164 (220)
115 2v9t_B SLIT homolog 2 protein 99.0 1.5E-09 5.2E-14 92.9 10.2 145 2-227 14-162 (220)
116 2je0_A Acidic leucine-rich nuc 99.0 7.4E-10 2.5E-14 88.6 7.1 126 126-279 15-148 (149)
117 1dce_A Protein (RAB geranylger 99.0 3.1E-12 1E-16 125.1 -8.6 190 95-329 346-566 (567)
118 1a9n_A U2A', U2A'; complex (nu 99.0 1.5E-09 5E-14 89.5 8.6 131 124-281 15-150 (176)
119 3e6j_A Variable lymphocyte rec 98.9 2.8E-09 9.7E-14 91.8 9.6 143 3-183 23-169 (229)
120 2ell_A Acidic leucine-rich nuc 98.9 2.4E-09 8.2E-14 87.4 7.6 128 1-190 26-163 (168)
121 2v70_A SLIT-2, SLIT homolog 2 98.9 1.3E-08 4.4E-13 87.0 12.4 145 131-310 14-164 (220)
122 2je0_A Acidic leucine-rich nuc 98.9 7.6E-10 2.6E-14 88.5 4.2 120 1-181 19-148 (149)
123 2xot_A Amphoterin-induced prot 98.8 6.8E-08 2.3E-12 89.0 13.6 148 153-334 20-174 (361)
124 3sb4_A Hypothetical leucine ri 98.8 6.4E-08 2.2E-12 87.9 12.6 196 127-333 48-307 (329)
125 1w8a_A SLIT protein; signaling 98.7 1.1E-07 3.6E-12 79.4 10.5 109 216-335 28-138 (192)
126 3sb4_A Hypothetical leucine ri 98.7 1.1E-07 3.9E-12 86.2 11.1 38 69-106 119-156 (329)
127 4b8c_D Glucose-repressible alc 98.7 2.9E-08 1E-12 99.8 7.3 83 245-334 245-327 (727)
128 4b8c_D Glucose-repressible alc 98.6 2.5E-08 8.5E-13 100.4 6.5 37 244-281 290-326 (727)
129 2wfh_A SLIT homolog 2 protein 98.6 1.6E-07 5.5E-12 78.5 9.9 48 132-182 14-63 (193)
130 1w8a_A SLIT protein; signaling 98.6 1.4E-07 4.9E-12 78.7 9.2 120 131-280 11-135 (192)
131 2wfh_A SLIT homolog 2 protein 98.6 3.5E-07 1.2E-11 76.4 11.5 107 216-335 30-138 (193)
132 1a9n_A U2A', U2A'; complex (nu 98.6 2.7E-08 9.2E-13 81.8 4.4 121 1-184 21-151 (176)
133 2o6r_A Variable lymphocyte rec 98.6 2.1E-07 7.3E-12 76.4 9.5 120 131-280 10-133 (177)
134 1ds9_A Outer arm dynein; leuci 98.5 1.5E-09 5.1E-14 91.3 -4.7 54 129-183 24-80 (198)
135 1ds9_A Outer arm dynein; leuci 98.5 1.8E-09 6.2E-14 90.8 -4.9 127 121-277 41-180 (198)
136 3e4g_A ATP synthase subunit S, 98.5 2.7E-08 9.2E-13 81.2 2.0 40 299-338 114-154 (176)
137 2o6r_A Variable lymphocyte rec 98.5 9.7E-07 3.3E-11 72.4 11.3 109 215-335 26-136 (177)
138 2ra8_A Uncharacterized protein 98.3 8.7E-07 3E-11 81.4 6.3 165 117-310 128-318 (362)
139 2r9u_A Variable lymphocyte rec 98.3 9.1E-07 3.1E-11 72.5 5.4 98 3-161 16-115 (174)
140 3g39_A Variable lymphocyte rec 98.2 1.4E-06 4.7E-11 71.1 5.4 100 2-161 12-112 (170)
141 3e4g_A ATP synthase subunit S, 98.2 1.5E-06 5.2E-11 70.8 5.5 18 297-314 137-154 (176)
142 4fdw_A Leucine rich hypothetic 98.2 3.2E-05 1.1E-09 72.0 14.8 82 242-332 295-379 (401)
143 2r9u_A Variable lymphocyte rec 98.2 7.7E-06 2.6E-10 66.9 9.0 100 220-334 15-116 (174)
144 4fdw_A Leucine rich hypothetic 98.2 4.3E-05 1.5E-09 71.1 15.1 172 123-333 175-355 (401)
145 2ra8_A Uncharacterized protein 98.2 5.9E-07 2E-11 82.5 2.3 135 122-281 166-317 (362)
146 3g39_A Variable lymphocyte rec 98.1 1.1E-05 3.8E-10 65.6 8.5 49 131-182 12-63 (170)
147 2ifg_A High affinity nerve gro 97.9 4.4E-05 1.5E-09 69.5 9.8 98 132-257 12-113 (347)
148 3un9_A NLR family member X1; l 97.8 3.5E-06 1.2E-10 77.8 0.7 42 120-161 92-136 (372)
149 2ifg_A High affinity nerve gro 97.7 0.00013 4.6E-09 66.2 9.2 83 245-333 29-113 (347)
150 4fs7_A Uncharacterized protein 97.5 0.00064 2.2E-08 62.9 11.5 82 242-332 292-375 (394)
151 3un9_A NLR family member X1; l 97.4 2.3E-05 7.8E-10 72.3 0.2 156 1-189 74-254 (372)
152 4gt6_A Cell surface protein; l 97.1 0.005 1.7E-07 56.8 12.7 106 213-334 261-368 (394)
153 4fs7_A Uncharacterized protein 97.1 0.0029 1E-07 58.4 10.6 100 213-328 293-393 (394)
154 1io0_A Tropomodulin; LRR prote 97.0 0.00027 9.3E-09 58.2 2.7 126 59-227 21-161 (185)
155 1io0_A Tropomodulin; LRR prote 96.4 0.0028 9.4E-08 52.0 4.5 113 213-334 32-162 (185)
156 3rw6_A Nuclear RNA export fact 96.3 0.0023 7.7E-08 55.8 3.3 82 244-330 167-258 (267)
157 4gt6_A Cell surface protein; l 96.1 0.17 5.9E-06 46.4 15.3 81 242-331 260-342 (394)
158 3rw6_A Nuclear RNA export fact 95.3 0.0035 1.2E-07 54.6 0.7 68 71-167 167-236 (267)
159 4h09_A Hypothetical leucine ri 94.1 0.66 2.3E-05 42.0 12.7 102 215-331 238-341 (379)
160 4h09_A Hypothetical leucine ri 93.3 0.83 2.8E-05 41.3 11.9 81 213-306 259-340 (379)
161 3rfe_A Platelet glycoprotein I 86.3 0.44 1.5E-05 36.2 2.9 34 300-334 32-66 (130)
162 3rfe_A Platelet glycoprotein I 78.3 1.4 4.8E-05 33.3 2.9 7 24-30 32-38 (130)
163 1pgv_A TMD-1, tropomodulin TMD 74.0 2.9 0.0001 34.2 3.9 78 58-161 25-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 72.7 3.8 0.00013 33.4 4.3 114 215-333 39-167 (197)
165 2lz0_A Uncharacterized protein 32.2 66 0.0023 22.6 4.6 44 260-308 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=9.5e-22 Score=199.84 Aligned_cols=274 Identities=16% Similarity=0.100 Sum_probs=169.9
Q ss_pred hhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC-CCchh
Q 018079 68 LQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKW 146 (361)
Q Consensus 68 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~ 146 (361)
..++++++|+.|+++.|.........+...+.++.+++..+.- ...++..+..+++|++|++++|... .+|.+
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL------TGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC------CSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc------cCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 4467777888888887776655556667777788888877641 1234566778888999999888876 47888
Q ss_pred hhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCC------------------
Q 018079 147 LTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS------------------ 206 (361)
Q Consensus 147 ~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~------------------ 206 (361)
++.+++|+.|++++|.-.+.+|. ++.++ |+.|+++++.-...+|..++............
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 88889999999988754446665 77888 99999987664445565544322111111000
Q ss_pred --------------------------------CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEE
Q 018079 207 --------------------------------SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEV 254 (361)
Q Consensus 207 --------------------------------~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 254 (361)
......+..+++|+.|+++++.-...++. .++.+++|+.|++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~------~l~~l~~L~~L~L 663 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK------EIGSMPYLFILNL 663 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG------GGGGCTTCCEEEC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH------HHhccccCCEEeC
Confidence 00112345567788888887543334433 4567888888888
Q ss_pred ecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 255 SSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 255 ~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
+++.--..+|..++.+++|+.|+++++.--..+|. .++++++|+.|++++|+....+|.+ ..+.++....+.|||
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ----AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG----GGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence 88643347888888888888888888655556775 5666788888888886555566642 233344444445554
Q ss_pred cch----hhccCCCCcccchhccCCcee
Q 018079 335 LLE----NRYREGKGEDWHKISHIPHIK 358 (361)
Q Consensus 335 ~l~----~~~~~~~~~~~~~~~~i~~~~ 358 (361)
.+= ..|....+++|++++|+|++.
T Consensus 739 ~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 739 GLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEESTTSCCCCSCC--------------
T ss_pred hhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 321 268888999999999999863
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=4.1e-20 Score=170.22 Aligned_cols=276 Identities=17% Similarity=0.141 Sum_probs=172.7
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
|++|+++++ .+..+|. ++.+++|++|++.++... +...+..++ |+ .+.+.+. .+... ..+.++++|++|
T Consensus 46 L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~-~L~L~~n-~i~~~-----~~~~~l~~L~~L 115 (347)
T 4fmz_A 46 ITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQIT-DISPLSNLVKLT-NLYIGTN-KITDI-----SALQNLTNLREL 115 (347)
T ss_dssp CSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCC-EEECCSS-CCCCC-----GGGTTCTTCSEE
T ss_pred ccEEEEeCC-ccccchh-hhhcCCccEEEccCCccc-cchhhhcCCcCC-EEEccCC-cccCc-----hHHcCCCcCCEE
Confidence 578889988 7888775 888999999999655444 222233333 44 4444432 11221 237788888888
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS 159 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~ 159 (361)
++++|....... +...++++.+++..+..... ...+..+++|++|++.++....++. +..+++|+.|+++
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-------~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSD-------LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLN 185 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECT
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccc-------ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEcc
Confidence 888776554222 44555556666655432111 2235556666666666665544443 4566666666666
Q ss_pred CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079 160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT 238 (361)
Q Consensus 160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~ 238 (361)
+| .+..++.+..++ |+.++++++. +...+. +..+++|++|+++++ .+...+
T Consensus 186 ~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------------~~~~~~L~~L~l~~n-~l~~~~---- 237 (347)
T 4fmz_A 186 YN-QIEDISPLASLTSLHYFTAYVNQ-ITDITP---------------------VANMTRLNSLKIGNN-KITDLS---- 237 (347)
T ss_dssp TS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG---------------------GGGCTTCCEEECCSS-CCCCCG----
T ss_pred CC-cccccccccCCCccceeecccCC-CCCCch---------------------hhcCCcCCEEEccCC-ccCCCc----
Confidence 65 344444455555 6666666532 333222 347788888888875 333332
Q ss_pred cccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccc
Q 018079 239 RKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC 318 (361)
Q Consensus 239 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~ 318 (361)
.+..+++|+.|+++++ .++.++ .+..+++|+.|++++| .++.++ .+..+++|+.|++++|......+..
T Consensus 238 ---~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 238 ---PLANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp ---GGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred ---chhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcChhH
Confidence 1457888888888885 566664 5667888888888886 455554 3556888999999987554445577
Q ss_pred cCCCCCCCeEEEeCCcc
Q 018079 319 LLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 319 l~~l~~L~~L~l~~c~~ 335 (361)
+..+++|++|++++|+-
T Consensus 307 l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp HHTCTTCSEEECCSSSC
T ss_pred hhccccCCEEEccCCcc
Confidence 88889999999998874
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=4.4e-20 Score=170.03 Aligned_cols=275 Identities=16% Similarity=0.151 Sum_probs=202.0
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
|++|++++| .+..+|. +.++++|++|++.++... ....+..++ |+ .+.+.+.. +.... .+.++++|+.|
T Consensus 68 L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~-~L~l~~n~-i~~~~-----~~~~l~~L~~L 137 (347)
T 4fmz_A 68 LEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNLR-ELYLNEDN-ISDIS-----PLANLTKMYSL 137 (347)
T ss_dssp CCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCS-EEECTTSC-CCCCG-----GGTTCTTCCEE
T ss_pred ccEEEccCC-ccccchh-hhcCCcCCEEEccCCccc-CchHHcCCCcCC-EEECcCCc-ccCch-----hhccCCceeEE
Confidence 689999999 8888887 999999999999666544 333333333 44 55554422 11111 27889999999
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS 159 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~ 159 (361)
+++.|...... ..+...++++.+++..+. ...+ ..+..+++|++|++++|....++. +..+++|+.++++
T Consensus 138 ~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~-------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 138 NLGANHNLSDL-SPLSNMTGLNYLTVTESK-------VKDV-TPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAY 207 (347)
T ss_dssp ECTTCTTCCCC-GGGTTCTTCCEEECCSSC-------CCCC-GGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred ECCCCCCcccc-cchhhCCCCcEEEecCCC-------cCCc-hhhccCCCCCEEEccCCccccccc-ccCCCccceeecc
Confidence 99988544322 336777788888888764 1111 126788999999999998777766 7789999999999
Q ss_pred CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079 160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT 238 (361)
Q Consensus 160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~ 238 (361)
++ .+..++.+..++ |+.|++++|. +..++. +..+++|++|+++++ .+..++
T Consensus 208 ~n-~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~---------------------~~~l~~L~~L~l~~n-~l~~~~---- 259 (347)
T 4fmz_A 208 VN-QITDITPVANMTRLNSLKIGNNK-ITDLSP---------------------LANLSQLTWLEIGTN-QISDIN---- 259 (347)
T ss_dssp SS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG---------------------GTTCTTCCEEECCSS-CCCCCG----
T ss_pred cC-CCCCCchhhcCCcCCEEEccCCc-cCCCcc---------------------hhcCCCCCEEECCCC-ccCCCh----
Confidence 96 566666677888 9999999864 454443 337899999999986 444432
Q ss_pred cccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccc
Q 018079 239 RKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC 318 (361)
Q Consensus 239 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~ 318 (361)
.+..+++|+.|++++| .++.++ .+..+++|+.|++++|.--...|. .+.++++|+.|++++|+ ++.++.
T Consensus 260 ---~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~-l~~~~~- 328 (347)
T 4fmz_A 260 ---AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQNH-ITDIRP- 328 (347)
T ss_dssp ---GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSSS-CCCCGG-
T ss_pred ---hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEccCCc-cccccC-
Confidence 3557999999999996 677775 577799999999999743322222 45668999999999975 666655
Q ss_pred cCCCCCCCeEEEeCCc
Q 018079 319 LLRTTTLQKLTIWGCP 334 (361)
Q Consensus 319 l~~l~~L~~L~l~~c~ 334 (361)
+..+++|+.|++++|+
T Consensus 329 ~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGCTTCSEESSSCC-
T ss_pred hhhhhccceeehhhhc
Confidence 7889999999999986
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.7e-19 Score=178.43 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=20.2
Q ss_pred CceeecCCCCccccc-CccCCCccccceecceee
Q 018079 1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFVV 33 (361)
Q Consensus 1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~ 33 (361)
|++|++++| .+..+ |..++++++|++|++.++
T Consensus 83 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 83 LDTLVLTAN-PLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CCEEECTTC-CCSEECTTTTSSCTTCCEEECTTS
T ss_pred cCeeeCCCC-cccccChhhhcccccccEeecccc
Confidence 567777777 55554 445677777777776443
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=2.1e-20 Score=184.93 Aligned_cols=194 Identities=18% Similarity=0.161 Sum_probs=88.2
Q ss_pred CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079 128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS 206 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 206 (361)
++|++|++.++....+| ++..+++|+.|++++|. ++.+|.+ .++ |+.|+++++..+...+ +.....+..+.++.
T Consensus 285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~-l~~lp~~-~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQ-LKQFPTL-DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSR 359 (606)
T ss_dssp TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCC-CSSCCCC-CCSSCCEEEEESCSSCEECC--CCCCTTCCEEECCS
T ss_pred CCCCEEEecCccchhhh-hccccccCCEEEccccc-CcccccC-CCCccceeeccCCcCccchh--hccCCCCCEEECcC
Confidence 44445555544444444 44455566666666653 2555544 555 6666665543333221 11111111111110
Q ss_pred CC------CCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-c-hhccCCCCcceEee
Q 018079 207 SS------SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-P-DYLLQMTVLQNLRI 278 (361)
Q Consensus 207 ~~------~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~~~~~l~~L~~L~l 278 (361)
.. ....+..+++|++|+++++. +..++ ..+..+++|+.|+++++. +..+ + ..+..+++|++|++
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS------ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC------CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEEC
T ss_pred CccCCCcchhhhhccCCcccEeECCCCc-cccch------hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEEC
Confidence 00 01112334444444444322 22211 133455666666665542 3222 2 24455666666666
Q ss_pred ccCCC-------cccCCcccccccCC--------------CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 279 FFCEN-------MEELPILEDHRTTD--------------IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 279 ~~c~~-------l~~lp~L~~L~l~~--------------l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
++|.- +..+++|++|++++ +++|++|++++|......|..+..+++|++|++++|.
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 65432 22334455544433 5666666666653333334556666777777776664
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=3.1e-19 Score=176.52 Aligned_cols=40 Identities=23% Similarity=0.084 Sum_probs=22.4
Q ss_pred hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccc
Q 018079 69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDE 108 (361)
Q Consensus 69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 108 (361)
.++++++|++|++++|.........+...++++.+++..+
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 3566667777777766654433233333556666666554
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.8e-20 Score=190.35 Aligned_cols=304 Identities=17% Similarity=0.098 Sum_probs=200.2
Q ss_pred CceeecCCCCccc-ccCcc-CCCccccceecceeeecCC-CCCcccccc--eeceeEEcC---------------CCCCC
Q 018079 1 MRSLLNFGTNSLK-YMPIG-ISKLTSLRRLDKFVVGGGV-DGSNTGRLQ--LRGECSIEG---------------LCNVS 60 (361)
Q Consensus 1 L~~L~l~~~~~l~-~lP~~-i~~L~~L~~L~l~~~~~~~-~~~~l~~L~--L~~~l~l~~---------------l~~~~ 60 (361)
|++|++++| .+. .+|.+ ++++++|++|++.++.... ....+..+. ++ .+.+.+ +..++
T Consensus 320 L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~-~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 320 LESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp CCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS-EEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred ccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc-EEEccCCCcCCCcChhhhhcccCCcc
Confidence 577888888 555 77766 8888888888886554321 111111110 11 111111 00000
Q ss_pred C-------hHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEE
Q 018079 61 H-------VDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEEL 133 (361)
Q Consensus 61 ~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 133 (361)
. .....+..+.++++|+.|+++.|.........+...++++.+++..+.. ...++..+..+++|++|
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l------~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML------EGEIPQELMYVKTLETL 471 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC------CSCCCGGGGGCTTCCEE
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc------cCcCCHHHcCCCCceEE
Confidence 0 0012234467777888888877765544455566667777777776541 12345566677788888
Q ss_pred EecccCCCC-CchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCC
Q 018079 134 WIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSS 210 (361)
Q Consensus 134 ~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 210 (361)
++++|.... +|.++..+++|+.|++++|.-...+|. ++.++ |+.|+++++.-...+|..
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------ 533 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE------------------ 533 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG------------------
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH------------------
Confidence 888777653 677777888888888888754445555 67777 888888876533344443
Q ss_pred CcccCCCCccEEEEcCCccchhhhhhhcc---------------------------------------------------
Q 018079 211 PSVIAFPKLKSLEIDGMKELEEWNYRITR--------------------------------------------------- 239 (361)
Q Consensus 211 ~~l~~~~~L~~L~L~~~~~l~~~~~~~~~--------------------------------------------------- 239 (361)
+..+++|+.|+++++.-...++..+..
T Consensus 534 --l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 534 --LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp --GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred --HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 447889999999876432222210000
Q ss_pred -------------ccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEE
Q 018079 240 -------------KENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRI 306 (361)
Q Consensus 240 -------------~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l 306 (361)
...+..+++|+.|+++++.--..+|..++.+++|+.|+++++.--..+|. .++++++|+.|++
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdL 687 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDL 687 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEEC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEEC
Confidence 01234467899999998654448899999999999999999765567886 6788999999999
Q ss_pred ecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 307 GYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 307 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
++|.....+|..+..+++|+.|++++|+-.
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 997666689999999999999999999654
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2e-20 Score=171.20 Aligned_cols=200 Identities=23% Similarity=0.353 Sum_probs=159.0
Q ss_pred cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhc
Q 018079 70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTS 149 (361)
Q Consensus 70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~ 149 (361)
+.++++|++|+++.|... .++..+..+++|++|++++|....+|..++.
T Consensus 100 l~~l~~L~~L~L~~n~l~-------------------------------~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 148 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-------------------------------ELPDTMQQFAGLETLTLARNPLRALPASIAS 148 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-------------------------------CCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred hhhCCCCCEEECCCCCcc-------------------------------chhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence 455777888888777632 2344556677788888888777678888888
Q ss_pred CccCCeeeecCCCCCCCCCC-CC---------CCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCC
Q 018079 150 LANLRELNLSLCFNCEHLPQ-LG---------KLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPK 218 (361)
Q Consensus 150 l~~L~~L~l~~~~~~~~l~~-l~---------~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (361)
+++|+.|++++|...+.+|. +. .++ |+.|+++++ .++.++.. +..+++
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~--------------------l~~l~~ 207 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS--------------------IANLQN 207 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG--------------------GGGCTT
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh--------------------hcCCCC
Confidence 88888888888776666665 33 378 999999875 45655543 447899
Q ss_pred ccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCC
Q 018079 219 LKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDI 298 (361)
Q Consensus 219 L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l 298 (361)
|++|+++++ .+..++. .+..+++|+.|++++|+....+|..+..+++|+.|++++|...+.+|. .+.++
T Consensus 208 L~~L~L~~N-~l~~l~~------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~l 276 (328)
T 4fcg_A 208 LKSLKIRNS-PLSALGP------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL----DIHRL 276 (328)
T ss_dssp CCEEEEESS-CCCCCCG------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT----TGGGC
T ss_pred CCEEEccCC-CCCcCch------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch----hhhcC
Confidence 999999985 4554443 466899999999999888888898899999999999999998888886 57789
Q ss_pred CCccEEEEecCCCCCccccccCCCCCCCeEEEeC
Q 018079 299 PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWG 332 (361)
Q Consensus 299 ~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 332 (361)
++|+.|++++|+.+..+|.++.++++|+.+++..
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 9999999999999999999999999999998874
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=5.1e-19 Score=169.63 Aligned_cols=298 Identities=17% Similarity=0.188 Sum_probs=141.4
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
|++|++++| .+..+|+ ++++++|++|++.++... ....+..++ |+ .+.+.+.. +.... .+.++++|++|
T Consensus 70 L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~-~L~L~~n~-l~~~~-----~~~~l~~L~~L 139 (466)
T 1o6v_A 70 LTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIA-DITPLANLTNLT-GLTLFNNQ-ITDID-----PLKNLTNLNRL 139 (466)
T ss_dssp CCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCC-EEECCSSC-CCCCG-----GGTTCTTCSEE
T ss_pred CCEEECCCC-ccCCchh-hhccccCCEEECCCCccc-cChhhcCCCCCC-EEECCCCC-CCCCh-----HHcCCCCCCEE
Confidence 466666666 5666665 666666666666544333 121133333 33 44433311 11111 16677777777
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS 159 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~ 159 (361)
+++.|...... .+....+++.+++... ... ...+..+++|++|+++++....++ .+..+++|+.|+++
T Consensus 140 ~l~~n~l~~~~--~~~~l~~L~~L~l~~~--------~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 140 ELSSNTISDIS--ALSGLTSLQQLSFGNQ--------VTD-LKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIAT 207 (466)
T ss_dssp EEEEEEECCCG--GGTTCTTCSEEEEEES--------CCC-CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred ECCCCccCCCh--hhccCCcccEeecCCc--------ccC-chhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEec
Confidence 77776554322 2334444444444210 000 112455556666666655543333 24455555555555
Q ss_pred CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCC--CCCCcccCCCCccEEEEcCCccchhhhhh
Q 018079 160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS--SSSPSVIAFPKLKSLEIDGMKELEEWNYR 236 (361)
Q Consensus 160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~~~ 236 (361)
+| .+..+++++.++ |+.|+++++. ++.++ .+.....+..+.++.. ...+.+..+++|+.|+++++ .+...+.
T Consensus 208 ~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~- 282 (466)
T 1o6v_A 208 NN-QISDITPLGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISP- 282 (466)
T ss_dssp SS-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGG-
T ss_pred CC-cccccccccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCcccc-
Confidence 54 233333344444 5555555432 22221 1111111111111100 11112445566666666553 2222211
Q ss_pred hccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCC-----cccCCcccccc-----------cCCCCC
Q 018079 237 ITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCEN-----MEELPILEDHR-----------TTDIPR 300 (361)
Q Consensus 237 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~-----l~~lp~L~~L~-----------l~~l~~ 300 (361)
+..+++|+.|+++++ .++.++. +..+++|+.|++++|.- +..+++|+.|+ +.++++
T Consensus 283 ------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~ 354 (466)
T 1o6v_A 283 ------LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 354 (466)
T ss_dssp ------GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred ------ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCC
Confidence 234555555555553 3333332 34455555555554311 12233333333 344788
Q ss_pred ccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 301 LSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 301 L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
|+.|++++|. ++.++. +..+++|+.|++++|+-
T Consensus 355 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 355 INWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred CCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcc
Confidence 9999998864 444444 78889999999988854
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=175.02 Aligned_cols=289 Identities=16% Similarity=0.098 Sum_probs=141.2
Q ss_pred CceeecCCCCcccccC-ccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
+++|+++++ .+..++ ..+.++++|++|++.++.... ....+..++ |+ .+.+.+-. +. ......+.++++|+
T Consensus 34 l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~L~L~~n~-l~---~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 34 TRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR-TLGLRSNR-LK---LIPLGVFTGLSNLT 107 (477)
T ss_dssp CSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECCSSC-CC---SCCTTSSTTCTTCC
T ss_pred CcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC-EEECCCCc-CC---ccCcccccCCCCCC
Confidence 456677766 666654 346677777777773322110 011111121 22 22222100 00 00111244555555
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCch-hhhcCccCCe
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRE 155 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~ 155 (361)
.|+++.|.........+....+++.|++..+. ...+ ...+..+++|++|++.+|....+|. ++..+++|+.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND-------LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTT-------CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCc-------cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 55555554433333334444444444444432 1111 2234444555555555554444332 2344555555
Q ss_pred eeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079 156 LNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232 (361)
Q Consensus 156 L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~ 232 (361)
|+++++ .+..++. +..++ |+.|+++++..+..++.... ...+|++|+++++ .++.
T Consensus 181 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------~~~~L~~L~l~~n-~l~~ 238 (477)
T 2id5_A 181 LRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--------------------YGLNLTSLSITHC-NLTA 238 (477)
T ss_dssp EEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--------------------TTCCCSEEEEESS-CCCS
T ss_pred EeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccc--------------------cCccccEEECcCC-cccc
Confidence 555553 2222222 44445 55555555444444433222 2335566666553 3333
Q ss_pred hhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCC
Q 018079 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPK 311 (361)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~ 311 (361)
++. ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++ .+..++ .-.+.++++|+.|++++| .
T Consensus 239 ~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~~l~~L~~L~L~~N-~ 307 (477)
T 2id5_A 239 VPY-----LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVE---PYAFRGLNYLRVLNVSGN-Q 307 (477)
T ss_dssp CCH-----HHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEEC---TTTBTTCTTCCEEECCSS-C
T ss_pred cCH-----HHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceEC---HHHhcCcccCCEEECCCC-c
Confidence 322 23345566666666654 3444433 2444666666666654 222221 114455889999999985 6
Q ss_pred CCccc-cccCCCCCCCeEEEeCCcc
Q 018079 312 LKVLP-DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 312 l~~l~-~~l~~l~~L~~L~l~~c~~ 335 (361)
++.++ ..+..+++|+.|++++++-
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CceeCHhHcCCCcccCEEEccCCCc
Confidence 77777 5678899999999998863
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=5.7e-20 Score=182.85 Aligned_cols=315 Identities=12% Similarity=0.132 Sum_probs=157.6
Q ss_pred CceeecCCCCcccc------------------cCccCC--CccccceecceeeecCC-CCCcccccc-eeceeEEcCCCC
Q 018079 1 MRSLLNFGTNSLKY------------------MPIGIS--KLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCN 58 (361)
Q Consensus 1 L~~L~l~~~~~l~~------------------lP~~i~--~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~ 58 (361)
|++|++++| .+.. +|++++ ++++|++|++.++.... ....+..++ |+ .+.+.+...
T Consensus 208 L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~n~~ 285 (636)
T 4eco_A 208 LRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ-LINVACNRG 285 (636)
T ss_dssp CCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC-EEECTTCTT
T ss_pred CCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC-EEECcCCCC
Confidence 688999999 6777 999999 99999999997765432 223344444 33 444443221
Q ss_pred CCChHH-HHHhhcCCC------CCCceEEEEecCCCCCCc-chhhhhhcccccccccccccccchhhH-HHHHhcCCCCC
Q 018079 59 VSHVDE-AERLQLSNK------KNLLRLHLQFGGKDEDWR-NEEEEEEEGEVVDGEDEEGRRKNEKDK-QLLEALQPPLN 129 (361)
Q Consensus 59 ~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~l~~ 129 (361)
... ..+..++++ ++|++|+++.|.....+. ..+...++++.|++..+. .. .++ .+..+++
T Consensus 286 ---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-------l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 286 ---ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-------LEGKLP-AFGSEIK 354 (636)
T ss_dssp ---SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-------CEEECC-CCEEEEE
T ss_pred ---CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-------Cccchh-hhCCCCC
Confidence 122 334444443 778888887776653222 156666677777776654 22 222 4444556
Q ss_pred ccEEEecccCCCCCchhhhcCcc-CCeeeecCCCCCCCCCC-CCC--Cc-cceEeccccccceeeccccc-------ccC
Q 018079 130 VEELWIIFYGGNIFPKWLTSLAN-LRELNLSLCFNCEHLPQ-LGK--LP-LEKLQLKNLKSVKRVGNEFL-------GIE 197 (361)
Q Consensus 130 L~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~l~~-l~~--l~-L~~L~l~~~~~l~~l~~~~~-------~~~ 197 (361)
|++|++++|....+|.++..+++ |+.|+++++ .+..+|. +.. ++ |+.|+++++.-....+..+. ...
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 66666666554455555555555 666666654 2334443 222 23 55555554321111111111 000
Q ss_pred CCCCCCCCCCC--CCCc--ccCCCCccEEEEcCCccchhhhhhhccc--cccccCCCccEEEEecCCCCCccchhcc--C
Q 018079 198 ESSEDGPSSSS--SSPS--VIAFPKLKSLEIDGMKELEEWNYRITRK--ENISIMPRLSSLEVSSCNKLKALPDYLL--Q 269 (361)
Q Consensus 198 ~~~~~~~~~~~--~~~~--l~~~~~L~~L~L~~~~~l~~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~ 269 (361)
.+..+.++... .++. +..+++|++|+++++ .+..++...... .....+++|+.|+++++ .++.+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhcc
Confidence 11111111000 0110 223555555555553 222222200000 00011125555555553 3445555444 4
Q ss_pred CCCcceEeeccCCCcccC-------Cccccccc-------------------CCCCCccEEEEecCCCCCccccccCCCC
Q 018079 270 MTVLQNLRIFFCENMEEL-------PILEDHRT-------------------TDIPRLSSLRIGYCPKLKVLPDCLLRTT 323 (361)
Q Consensus 270 l~~L~~L~l~~c~~l~~l-------p~L~~L~l-------------------~~l~~L~~L~l~~c~~l~~l~~~l~~l~ 323 (361)
+++|+.|+++++ .+..+ ++|+.|++ .++++|++|++++|. ++.+|..+. +
T Consensus 512 l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~ 587 (636)
T 4eco_A 512 LPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--P 587 (636)
T ss_dssp CTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--T
T ss_pred CCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--C
Confidence 555555555553 22222 23333333 336777788887754 477776554 6
Q ss_pred CCCeEEEeCCcc
Q 018079 324 TLQKLTIWGCPL 335 (361)
Q Consensus 324 ~L~~L~l~~c~~ 335 (361)
+|+.|++++|+.
T Consensus 588 ~L~~L~Ls~N~l 599 (636)
T 4eco_A 588 NISVLDIKDNPN 599 (636)
T ss_dssp TCCEEECCSCTT
T ss_pred cCCEEECcCCCC
Confidence 778888887754
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.2e-19 Score=184.85 Aligned_cols=314 Identities=12% Similarity=0.136 Sum_probs=193.8
Q ss_pred CceeecCCCCcccc------------------cCccCC--CccccceecceeeecCC-CCCcccccc-eeceeEEcCCCC
Q 018079 1 MRSLLNFGTNSLKY------------------MPIGIS--KLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCN 58 (361)
Q Consensus 1 L~~L~l~~~~~l~~------------------lP~~i~--~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~ 58 (361)
|++|++++| .+.. +|++++ ++++|++|++.++.... ....+..++ |+ .+.+.+...
T Consensus 450 L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~-~L~Ls~N~~ 527 (876)
T 4ecn_A 450 LQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ-SLNIACNRG 527 (876)
T ss_dssp CCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC-EEECTTCTT
T ss_pred CCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC-EEECcCCCC
Confidence 689999999 7777 999998 99999999997765432 223344444 44 555544221
Q ss_pred CCChHHHHHhh-------cCCCCCCceEEEEecCCCCCCc-chhhhhhcccccccccccccccchhhHHHHHhcCCCCCc
Q 018079 59 VSHVDEAERLQ-------LSNKKNLLRLHLQFGGKDEDWR-NEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNV 130 (361)
Q Consensus 59 ~~~~~~~~~~~-------l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 130 (361)
+.. ...+.. +..+++|+.|+++.|.....+. ..+...++++.|++..+. ...++ .+..+++|
T Consensus 528 lsg--~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-------l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 528 ISA--AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-------VRHLE-AFGTNVKL 597 (876)
T ss_dssp SCH--HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-------CCBCC-CCCTTSEE
T ss_pred ccc--ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-------cccch-hhcCCCcc
Confidence 211 023333 3455699999999998874333 267888899999998875 33334 77888999
Q ss_pred cEEEecccCCCCCchhhhcCcc-CCeeeecCCCCCCCCCC-CCCC--c-cceEeccccccceeeccccc-cc-----CCC
Q 018079 131 EELWIIFYGGNIFPKWLTSLAN-LRELNLSLCFNCEHLPQ-LGKL--P-LEKLQLKNLKSVKRVGNEFL-GI-----EES 199 (361)
Q Consensus 131 ~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~l~~-l~~l--~-L~~L~l~~~~~l~~l~~~~~-~~-----~~~ 199 (361)
++|++++|....+|.++..+++ |+.|++++| .+..+|. +..+ + |+.|+++++. +....+.+. .. ..+
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCc
Confidence 9999999888788988888888 999999987 4556776 3333 4 8888888754 322211111 00 011
Q ss_pred CCCCCCCCC--CCCc--ccCCCCccEEEEcCCccchhhhhhhccc--cccccCCCccEEEEecCCCCCccchhcc--CCC
Q 018079 200 SEDGPSSSS--SSPS--VIAFPKLKSLEIDGMKELEEWNYRITRK--ENISIMPRLSSLEVSSCNKLKALPDYLL--QMT 271 (361)
Q Consensus 200 ~~~~~~~~~--~~~~--l~~~~~L~~L~L~~~~~l~~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~ 271 (361)
..+.++... .++. +..+++|+.|+++++ .+..++..+... .....+++|+.|++++| .++.+|..+. .++
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLP 753 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCC
Confidence 111111110 1110 124566666666653 333333200000 00112236777777664 5556666665 677
Q ss_pred CcceEeeccCCCcccCCcccccccCCCCCccEEEEec------CCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 272 VLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGY------CPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 272 ~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~------c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
+|+.|+++++ .+..+|. .+.++++|+.|++++ |.....+|..+.++++|+.|++++|.-
T Consensus 754 ~L~~L~Ls~N-~L~~lp~----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 754 YLSNMDVSYN-CFSSFPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCCEEECCSS-CCSSCCC----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CcCEEEeCCC-CCCccch----hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 7777777764 4444553 455677888888865 333456777777888888888888764
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=7.5e-20 Score=167.38 Aligned_cols=212 Identities=21% Similarity=0.272 Sum_probs=174.9
Q ss_pred CCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCc
Q 018079 72 NKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLA 151 (361)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~ 151 (361)
...+++.|+++.+... .++..+..+++|++|+++++....+|..++.++
T Consensus 79 ~~~~l~~L~L~~n~l~-------------------------------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~ 127 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-------------------------------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFA 127 (328)
T ss_dssp TSTTCCEEEEESSCCS-------------------------------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGT
T ss_pred cccceeEEEccCCCch-------------------------------hcChhhhhCCCCCEEECCCCCccchhHHHhccC
Confidence 3578999999988743 344556678999999999998888999999999
Q ss_pred cCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079 152 NLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE 229 (361)
Q Consensus 152 ~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 229 (361)
+|+.|++++| .+..+|. ++.++ |+.|++++|..+..++..+.... ....+.++++|++|+++++ .
T Consensus 128 ~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-----------~~~~~~~l~~L~~L~L~~n-~ 194 (328)
T 4fcg_A 128 GLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTD-----------ASGEHQGLVNLQSLRLEWT-G 194 (328)
T ss_dssp TCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC------------CCCEEESTTCCEEEEEEE-C
T ss_pred CCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc-----------chhhhccCCCCCEEECcCC-C
Confidence 9999999997 5667776 88899 99999999887777776543210 0011456999999999985 5
Q ss_pred chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079 230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC 309 (361)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c 309 (361)
+..++. .+..+++|+.|+++++ .+..+|..+..+++|++|++++|...+.+|. .++++++|+.|++++|
T Consensus 195 l~~lp~------~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 195 IRSLPA------SIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP----IFGGRAPLKRLILKDC 263 (328)
T ss_dssp CCCCCG------GGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC----CTTCCCCCCEEECTTC
T ss_pred cCcchH------hhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH----HhcCCCCCCEEECCCC
Confidence 555544 4668999999999996 6778888889999999999999988888886 6778999999999999
Q ss_pred CCCCccccccCCCCCCCeEEEeCCccchh
Q 018079 310 PKLKVLPDCLLRTTTLQKLTIWGCPLLEN 338 (361)
Q Consensus 310 ~~l~~l~~~l~~l~~L~~L~l~~c~~l~~ 338 (361)
+....+|..+..+++|+.|++++|+....
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 99999998899999999999999987664
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.7e-19 Score=179.40 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=93.9
Q ss_pred HHhhcC--CCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhH-HHHHhcCCC------CCccEEEec
Q 018079 66 ERLQLS--NKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDK-QLLEALQPP------LNVEELWII 136 (361)
Q Consensus 66 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~l------~~L~~L~l~ 136 (361)
.+..++ ++++|++|+++.|.........+...++++.|++..+..+ .. .++..+..+ ++|++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-----~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-----SGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-----CHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-----ccccchHHHHhhhccccCCCCCEEECC
Confidence 455667 8888888888888765555566777888888888876311 22 455555544 889999999
Q ss_pred ccCCCCCch--hhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCC-CCCCCCC
Q 018079 137 FYGGNIFPK--WLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEE-SSEDGPS 205 (361)
Q Consensus 137 ~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~-~~~~~~~ 205 (361)
+|....+|. +++.+++|+.|++++|.-.+.+|.++.++ |+.|+++++. +..++..+..... +..+.++
T Consensus 314 ~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp SSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECC
T ss_pred CCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEcc
Confidence 888778888 88899999999999874333777777778 9999998754 5566655444433 3333333
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=3e-19 Score=170.43 Aligned_cols=110 Identities=21% Similarity=0.297 Sum_probs=64.4
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccC-Ccc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEEL-PIL 290 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l-p~L 290 (361)
+..+++|++|+++++ .+..... ..+..+++|+.|+++++ .++.+ +..+..+++|++|+++++ .++.+ |.
T Consensus 295 ~~~l~~L~~L~Ls~n-~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~- 365 (455)
T 3v47_A 295 FSHFTDLEQLTLAQN-EINKIDD-----NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQ- 365 (455)
T ss_dssp TTTCTTCCEEECTTS-CCCEECT-----TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTT-
T ss_pred cccCCCCCEEECCCC-cccccCh-----hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChh-
Confidence 344555555555553 2222211 23345566666666654 34433 334455666666666654 22222 22
Q ss_pred cccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079 291 EDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 291 ~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~ 335 (361)
.+.++++|+.|++++| .++.+| ..+..+++|+.|++++++-
T Consensus 366 ---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 366 ---SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ---TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ---hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 3455889999999984 677777 4568899999999988754
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=2.1e-18 Score=165.42 Aligned_cols=298 Identities=16% Similarity=0.125 Sum_probs=194.1
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
++.|++.++ .+..+|. +..+++|++|++.++... ....+..++ |+ .+.+.+..- .... .+.++++|++|
T Consensus 48 l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~n~l~-~~~~~~~l~~L~-~L~l~~n~l-~~~~-----~~~~l~~L~~L 117 (466)
T 1o6v_A 48 VTTLQADRL-GIKSIDG-VEYLNNLTQINFSNNQLT-DITPLKNLTKLV-DILMNNNQI-ADIT-----PLANLTNLTGL 117 (466)
T ss_dssp CCEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCC-EEECCSSCC-CCCG-----GGTTCTTCCEE
T ss_pred ccEEecCCC-CCccCcc-hhhhcCCCEEECCCCccC-CchhhhccccCC-EEECCCCcc-ccCh-----hhcCCCCCCEE
Confidence 578999999 8888885 889999999999766544 222244444 44 555443221 1111 17889999999
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS 159 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~ 159 (361)
+++.|...... .+...++++.|++..+. ...+ ..+..+++|++|++.+ .....+. +..+++|+.|+++
T Consensus 118 ~L~~n~l~~~~--~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 118 TLFNNQITDID--PLKNLTNLNRLELSSNT-------ISDI-SALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDIS 185 (466)
T ss_dssp ECCSSCCCCCG--GGTTCTTCSEEEEEEEE-------ECCC-GGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECC
T ss_pred ECCCCCCCCCh--HHcCCCCCCEEECCCCc-------cCCC-hhhccCCcccEeecCC-cccCchh-hccCCCCCEEECc
Confidence 99988765543 36777888888888764 2222 3477888899998864 3333433 6788999999999
Q ss_pred CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCC--CCCCCcccCCCCccEEEEcCCccchhhhhh
Q 018079 160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS--SSSSPSVIAFPKLKSLEIDGMKELEEWNYR 236 (361)
Q Consensus 160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~ 236 (361)
+| .+..++.+..++ |+.|+++++. +...+. +.....+..+.++. ....+.+..+++|+.|+++++. +...+
T Consensus 186 ~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~-- 259 (466)
T 1o6v_A 186 SN-KVSDISVLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLA-- 259 (466)
T ss_dssp SS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCG--
T ss_pred CC-cCCCChhhccCCCCCEEEecCCc-cccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccch--
Confidence 87 466666677888 9999998754 444332 22222222222221 1223456667777777777653 33222
Q ss_pred hccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCC-----CcccCCcccccccCC-----------CCC
Q 018079 237 ITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE-----NMEELPILEDHRTTD-----------IPR 300 (361)
Q Consensus 237 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~-----~l~~lp~L~~L~l~~-----------l~~ 300 (361)
.+..+++|+.|+++++ .+..++. +..+++|+.|++++|. .+..+++|+.|++++ +++
T Consensus 260 -----~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 332 (466)
T 1o6v_A 260 -----PLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 332 (466)
T ss_dssp -----GGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred -----hhhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCcc
Confidence 2456788888888875 5666654 6678888888888752 233455666666655 677
Q ss_pred ccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 301 LSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 301 L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
|+.|++++| .++.++ .+..+++|+.|++++|+-
T Consensus 333 L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 333 LQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred CCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 777777775 555554 467778888888887753
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=4.8e-19 Score=165.83 Aligned_cols=298 Identities=15% Similarity=0.108 Sum_probs=153.2
Q ss_pred CceeecCCCCcccccCcc-CCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
+++|+++++ .+..+|.. +.++++|++|++.++.... ....+..++ |+ .+.+.+.. .....+..++++++|+
T Consensus 47 l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 47 QKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ-KLYMGFNA----IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred ceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcC-EEECCCCC----CCcCCHHHhcCCCCCC
Confidence 467777777 77777766 5777888888884332221 001122222 22 33332211 0011112355666666
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCchhhhcCccCCee
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPKWLTSLANLREL 156 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L 156 (361)
+|+++.|.....+...+...++++.|++..+. ...+ ...+..+++|++|+++++....++ +..+++|+.|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L 191 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA 191 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEE
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-------cCccChhhccCCCCCCEEECCCCcCCccc--ccccccccee
Confidence 66666665544333334445555555555433 1111 223444555555555555443332 2344445555
Q ss_pred eecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC--CCCCCCcccCCCCccEEEEcCCccchhh
Q 018079 157 NLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS--SSSSSPSVIAFPKLKSLEIDGMKELEEW 233 (361)
Q Consensus 157 ~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 233 (361)
+++++ .+..+ ...+ |+.|+++++. +..++.... ..+..+.+. .....+.+..+++|++|+++++ .+...
T Consensus 192 ~l~~n-~l~~~---~~~~~L~~L~l~~n~-l~~~~~~~~--~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~ 263 (390)
T 3o6n_A 192 NVSYN-LLSTL---AIPIAVEELDASHNS-INVVRGPVN--VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKI 263 (390)
T ss_dssp ECCSS-CCSEE---ECCSSCSEEECCSSC-CCEEECCCC--SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEE
T ss_pred ecccc-ccccc---CCCCcceEEECCCCe-eeecccccc--ccccEEECCCCCCcccHHHcCCCCccEEECCCC-cCCCc
Confidence 44443 12111 1122 5555555422 333322111 111111111 1111234556777777777764 33332
Q ss_pred hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079 234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK 313 (361)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~ 313 (361)
.. ..+..+++|+.|+++++ .++.++..+..+++|++|+++++ .+..+|. .+..+++|+.|++++| .++
T Consensus 264 ~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~l~~L~~L~L~~N-~i~ 331 (390)
T 3o6n_A 264 MY-----HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER----NQPQFDRLENLYLDHN-SIV 331 (390)
T ss_dssp ES-----GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG----GHHHHTTCSEEECCSS-CCC
T ss_pred Ch-----hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc----cccccCcCCEEECCCC-ccc
Confidence 21 24456777777777774 56666666666777777777775 4555553 3445788999999885 466
Q ss_pred ccccccCCCCCCCeEEEeCCcc
Q 018079 314 VLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 314 ~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
.++ +..+++|+.|++++++-
T Consensus 332 ~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 332 TLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCC--CCTTCCCSEEECCSSCE
T ss_pred eeC--chhhccCCEEEcCCCCc
Confidence 665 66778999999998864
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=165.86 Aligned_cols=284 Identities=21% Similarity=0.184 Sum_probs=191.3
Q ss_pred eeecCCCCcccccCccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceEE
Q 018079 3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLH 80 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~ 80 (361)
.++.++. .+..+|.++. .++++|++.+..... ....+..++ |+ .+.+.+- ......+..+.++++|+.|+
T Consensus 15 ~v~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n----~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 15 AVLCHRK-RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLE-ELELNEN----IVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp EEECCSC-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCC-EEECTTS----CCCEECTTTTTTCTTCCEEE
T ss_pred EEEeCCC-CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCC-EEECCCC----ccCEeChhhhhCCccCCEEE
Confidence 5666766 7889998765 689999995443321 111222333 33 4444331 11111234578889999999
Q ss_pred EEecCCCCCCcchhhhhhcccccccccccccccchhhHH-HHHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeee
Q 018079 81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQ-LLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNL 158 (361)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l 158 (361)
++.|.........+...++++.|++..+. ... ....+..+++|++|++.++.... .+..+..+++|+.|++
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENK-------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCc-------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 99887766655566777788888887654 211 13456677888888888877655 3445667888888888
Q ss_pred cCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079 159 SLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 235 (361)
Q Consensus 159 ~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~ 235 (361)
++| .+..++. +..++ |+.|+++++. +..++... +..+++|+.|+++++..+..++.
T Consensus 160 ~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~-------------------~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 160 EKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYS-------------------FKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp ESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTC-------------------SCSCTTCCEEEEECCTTCCEECT
T ss_pred CCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeChhh-------------------cccCcccceeeCCCCccccccCc
Confidence 886 5555554 67777 8888887643 45444322 44788899999988776665544
Q ss_pred hhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCc
Q 018079 236 RITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKV 314 (361)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~ 314 (361)
......+|+.|+++++ .++.+|. .+..+++|+.|+++++. +..++. -.+.++++|+.|++.++ .++.
T Consensus 219 ------~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~L~~n-~l~~ 286 (477)
T 2id5_A 219 ------NCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG---SMLHELLRLQEIQLVGG-QLAV 286 (477)
T ss_dssp ------TTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT---TSCTTCTTCCEEECCSS-CCSE
T ss_pred ------ccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh---hhccccccCCEEECCCC-ccce
Confidence 2224458999999886 5777774 46678999999998853 444432 14566899999999986 4555
Q ss_pred c-ccccCCCCCCCeEEEeCCc
Q 018079 315 L-PDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 315 l-~~~l~~l~~L~~L~l~~c~ 334 (361)
+ |..+..+++|+.|++++|.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSC
T ss_pred ECHHHhcCcccCCEEECCCCc
Confidence 4 5788999999999999984
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2e-19 Score=183.13 Aligned_cols=305 Identities=14% Similarity=0.074 Sum_probs=207.9
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeee-cCC--CCCcccc-------cc-eeceeEEcCCCCCCChHHHHHh-
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVG-GGV--DGSNTGR-------LQ-LRGECSIEGLCNVSHVDEAERL- 68 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~-~~~--~~~~l~~-------L~-L~~~l~l~~l~~~~~~~~~~~~- 68 (361)
|++|++++|.....+|..++++++|++|++.++. ... -...+.. ++ |+ .+.+.+..- . .++.
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~L-~----~ip~~ 566 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNL-E----EFPAS 566 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSCC-C----BCCCH
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCcC-C----ccCCh
Confidence 6899999995577899999999999999995443 110 0000111 11 22 333333111 1 1222
Q ss_pred -hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCC-ccEEEecccCCCCCchh
Q 018079 69 -QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLN-VEELWIIFYGGNIFPKW 146 (361)
Q Consensus 69 -~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~ 146 (361)
.++++++|+.|+++.|.....+ .+...++++.|++..+. ...++..+..+++ |++|++++|....+|.+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~-------l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQ-------IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSC-------CSCCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred hhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCc-------cccchHHHhhccccCCEEECcCCCCCcCchh
Confidence 5788999999999988876433 67788889999998776 3355667788888 99999999887778877
Q ss_pred hhcCc--cCCeeeecCCCCCCCCCCC----C--CCc-cceEeccccccceeeccccc-ccCCCCCCCCCCCC--CCC---
Q 018079 147 LTSLA--NLRELNLSLCFNCEHLPQL----G--KLP-LEKLQLKNLKSVKRVGNEFL-GIEESSEDGPSSSS--SSP--- 211 (361)
Q Consensus 147 ~~~l~--~L~~L~l~~~~~~~~l~~l----~--~l~-L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~--~~~--- 211 (361)
+..+. +|+.|++++|.-...+|.+ + ..+ |+.|+++++. +..++..++ ....+..+.++... .++
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 66554 4888888887443333322 2 334 7888887643 555555443 22233333333111 111
Q ss_pred ------cccCCCCccEEEEcCCccchhhhhhhccccccc--cCCCccEEEEecCCCCCccchhccCCCCcceEeeccC--
Q 018079 212 ------SVIAFPKLKSLEIDGMKELEEWNYRITRKENIS--IMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC-- 281 (361)
Q Consensus 212 ------~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c-- 281 (361)
....+++|+.|+++++ .+..++. .+. .+++|+.|+++++ .+..+|..+..+++|+.|+++++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~------~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFN-KLTSLSD------DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSS-CCCCCCG------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBC
T ss_pred hccccccccccCCccEEECCCC-CCccchH------HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCC
Confidence 1223449999999986 5665554 343 7999999999995 67789999999999999999873
Q ss_pred ----CCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 282 ----ENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 282 ----~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
.-...+|. .+.++++|+.|++++|. +..+|..+. ++|+.|++++|+..
T Consensus 789 ls~N~l~~~ip~----~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 789 AEGNRILRQWPT----GITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp TTCCBCCCCCCT----TGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTC
T ss_pred cccccccccChH----HHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCC
Confidence 33445664 56779999999999975 499997765 79999999999753
No 20
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=2.2e-18 Score=164.61 Aligned_cols=288 Identities=15% Similarity=0.127 Sum_probs=177.4
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
|++|+++++ .+..+| +++.+++|++|++.++... .. .+..++ ++ .+.+.+.. +... .++++++|++|
T Consensus 44 L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~-~~-~~~~l~~L~-~L~Ls~N~-l~~~------~~~~l~~L~~L 111 (457)
T 3bz5_A 44 LTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNIT-TL-DLSQNTNLT-YLACDSNK-LTNL------DVTPLTKLTYL 111 (457)
T ss_dssp CCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCS-CC-CCTTCTTCS-EEECCSSC-CSCC------CCTTCTTCCEE
T ss_pred CCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCC-eE-ccccCCCCC-EEECcCCC-Ccee------ecCCCCcCCEE
Confidence 688999998 888887 6899999999999655544 21 133333 33 44443311 1111 26788888888
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeee
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNL 158 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l 158 (361)
+++.|..... ++...++++.+++..+. ...+ .+..+++|++|++++|.... + .+..+++|+.|++
T Consensus 112 ~L~~N~l~~l---~~~~l~~L~~L~l~~N~-------l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 112 NCDTNKLTKL---DVSQNPLLTYLNCARNT-------LTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp ECCSSCCSCC---CCTTCTTCCEEECTTSC-------CSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred ECCCCcCCee---cCCCCCcCCEEECCCCc-------ccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 8888766543 25666777777777654 2111 25566777777777764322 3 2456677777777
Q ss_pred cCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCC--CCCCcccCCCCccEEEEcCCccchhhhh
Q 018079 159 SLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS--SSSPSVIAFPKLKSLEIDGMKELEEWNY 235 (361)
Q Consensus 159 ~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~~ 235 (361)
++| .+..++ +..++ |+.|+++++. ++.++ +.....+..+.++.. ..++ +..+++|+.|+++++ .+...+.
T Consensus 178 s~n-~l~~l~-l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N-~l~~~~~ 250 (457)
T 3bz5_A 178 SFN-KITELD-VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVN-PLTELDV 250 (457)
T ss_dssp CSS-CCCCCC-CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCCC
T ss_pred CCC-ccceec-cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCC-cCCCcCH
Confidence 775 455554 56666 7777776533 33331 111111222222200 1122 456677777777764 3333221
Q ss_pred hhccccccccCCCccEE----------EEecCCCCCccchhccCCCCcceEeeccCCCcccCC----cccccccCCCCCc
Q 018079 236 RITRKENISIMPRLSSL----------EVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP----ILEDHRTTDIPRL 301 (361)
Q Consensus 236 ~~~~~~~~~~l~~L~~L----------~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp----~L~~L~l~~l~~L 301 (361)
..+++|+.| ++++|.....+| ...+++|+.|++++|..++.+| .|+.++++++++|
T Consensus 251 --------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 251 --------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp --------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred --------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 234444444 444443333444 3457889999999988777665 6888899999999
Q ss_pred cEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 302 SSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 302 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
+.|+++++ .++.++ +.++++|+.|+++++.
T Consensus 321 ~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 321 VYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred CEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 99999984 667774 8889999999998774
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=176.36 Aligned_cols=197 Identities=18% Similarity=0.202 Sum_probs=102.0
Q ss_pred CCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079 125 QPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG 203 (361)
Q Consensus 125 ~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 203 (361)
..+++|++|++.++....+|.++..+ +|+.|++++| .+..+|. ..++ |+.|+++++......+. .....+..+.
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~ 353 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC-KFGQFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLD 353 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESC-BCSSCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEE
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccC-cccccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEe
Confidence 34456666666666555566666666 6677776665 3334443 3455 66666655432111111 0000011111
Q ss_pred CCCCCC------CCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-c-hhccCCCCcce
Q 018079 204 PSSSSS------SPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-P-DYLLQMTVLQN 275 (361)
Q Consensus 204 ~~~~~~------~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~~~~~l~~L~~ 275 (361)
++.... ...+..+++|++|+++++ .+..++. .+..+++|+.|++.++ .+... + ..+..+++|++
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS------NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE------EEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCE
T ss_pred CcCCccCccccccccccccCccCEEECCCC-ccccccc------cccccCCCCEEEccCC-ccccccchhhhhcCCCCCE
Confidence 110000 011334555555555553 2222222 2456777777777664 33333 2 24556777777
Q ss_pred EeeccCCC-------cccCCcccccccCC--------------CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 276 LRIFFCEN-------MEELPILEDHRTTD--------------IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 276 L~l~~c~~-------l~~lp~L~~L~l~~--------------l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
|++++|.- +..+++|+.|++++ +++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 77776532 23345566555543 5677777777753333335677777888888887774
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=168.70 Aligned_cols=138 Identities=22% Similarity=0.220 Sum_probs=84.8
Q ss_pred CCCc-cceEecccccccee-ecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCC
Q 018079 171 GKLP-LEKLQLKNLKSVKR-VGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR 248 (361)
Q Consensus 171 ~~l~-L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~ 248 (361)
..++ |++|+++++. +.. .+.. +..+++|++|+++++. +..++. + ...+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~--------------------~~~l~~L~~L~L~~N~-l~~l~~-~--~~~~~~l~~ 375 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFEN--------------------CGHLTELETLILQMNQ-LKELSK-I--AEMTTQMKS 375 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTT--------------------CCCCSSCCEEECCSSC-CCBHHH-H--HHHHTTCTT
T ss_pred hhCCcccEEEeECCc-cChhhhhh--------------------hccCCCCCEEEccCCc-cCcccc-c--hHHHhhCCC
Confidence 5667 8888888754 333 2222 3467777777777643 332211 0 113456777
Q ss_pred ccEEEEecCCCCCc-cchh-ccCCCCcceEeeccCCCccc----C-CcccccccCC------------CCCccEEEEecC
Q 018079 249 LSSLEVSSCNKLKA-LPDY-LLQMTVLQNLRIFFCENMEE----L-PILEDHRTTD------------IPRLSSLRIGYC 309 (361)
Q Consensus 249 L~~L~l~~c~~l~~-l~~~-~~~l~~L~~L~l~~c~~l~~----l-p~L~~L~l~~------------l~~L~~L~l~~c 309 (361)
|+.|+++++ .+.. +|.. +..+++|++|++++|.--.. + ++|+.|++++ +++|+.|++++|
T Consensus 376 L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 376 LQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 777777775 3444 6654 44566777777776532111 2 2455554443 788899999885
Q ss_pred CCCCccccc-cCCCCCCCeEEEeCCcc
Q 018079 310 PKLKVLPDC-LLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 310 ~~l~~l~~~-l~~l~~L~~L~l~~c~~ 335 (361)
.++.+|.. +..+++|++|++++++-
T Consensus 455 -~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 455 -QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cCCccCHHHhccCCcccEEECcCCCC
Confidence 67788865 78888999999988864
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=5.6e-19 Score=172.60 Aligned_cols=115 Identities=24% Similarity=0.324 Sum_probs=66.4
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc-------
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME------- 285 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~------- 285 (361)
++.+++|++|+++++ .++.++.. ...+..+++|+.|+++++ .++.+|..+..+++|++|+++++. ++
T Consensus 357 ~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~ 430 (549)
T 2z81_A 357 KGAWPSLQTLVLSQN-HLRSMQKT---GEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIP 430 (549)
T ss_dssp TTSSTTCCEEECTTS-CCCCHHHH---HHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSC
T ss_pred hhccccCcEEEccCC-cccccccc---hhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccchhc
Confidence 446777888888774 44433310 123456778888888775 566777766667777777777643 22
Q ss_pred ------------------cCCcccccccCC-----------CCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079 286 ------------------ELPILEDHRTTD-----------IPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 286 ------------------~lp~L~~L~l~~-----------l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 334 (361)
.+|+|++|++++ +++|+.|++++| .++.++ ..+..+++|+.|++++|+
T Consensus 431 ~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 223333333333 445555555553 333433 345666666666666655
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=5.4e-19 Score=174.80 Aligned_cols=279 Identities=13% Similarity=0.059 Sum_probs=180.7
Q ss_pred cccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCC
Q 018079 11 SLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDED 89 (361)
Q Consensus 11 ~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 89 (361)
.+...+..+..+.+|++|++.++... ....+..+. ++ .+.+.+... ... + .+ ++++|+.|+++.|.....
T Consensus 273 ~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~l~~~~~L~-~L~l~~n~l-~~l----p-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 273 DFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQ-SLSIIRCQL-KQF----P-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp TCCGGGGSCGGGTTCSEEEEESCCCC-CCCCCCTTCCCS-EEEEESCCC-SSC----C-CC-CCSSCCEEEEESCSSCEE
T ss_pred cccccccccccCCCCCEEEecCccch-hhhhccccccCC-EEEcccccC-ccc----c-cC-CCCccceeeccCCcCccc
Confidence 33333333677777777777555443 222233322 33 444443222 111 1 23 677788888877743221
Q ss_pred CcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCC-
Q 018079 90 WRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLP- 168 (361)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~- 168 (361)
..+...++++.+++..+.-.. ....+..+..+++|++|++++|....+|..+..+++|+.|++++|.-....+
T Consensus 344 --~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 344 --FKKVALPSLSYLDLSRNALSF----SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp --CCCCCCTTCCEEECCSSCEEE----EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred --hhhccCCCCCEEECcCCccCC----CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh
Confidence 134455666666666543100 0001344567788999999988876677777888999999999874333333
Q ss_pred -CCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccC
Q 018079 169 -QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM 246 (361)
Q Consensus 169 -~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l 246 (361)
.+..++ |+.|+++++. +....... +..+++|++|+++++. +..... +..+..+
T Consensus 418 ~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n~-l~~~~~----~~~~~~l 472 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTN-TKIDFDGI-------------------FLGLTSLNTLKMAGNS-FKDNTL----SNVFANT 472 (606)
T ss_dssp TTTTTCTTCCEEECTTSC-CEECCTTT-------------------TTTCTTCCEEECTTCE-EGGGEE----CSCCTTC
T ss_pred hhhhccccCCEEECcCCC-CCccchhh-------------------hcCCCCCCEEECCCCc-CCCcch----HHhhccC
Confidence 367788 9999998765 44433222 4478999999999864 433111 2356688
Q ss_pred CCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCC-C
Q 018079 247 PRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTT-T 324 (361)
Q Consensus 247 ~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~-~ 324 (361)
++|+.|++++| .++.+ |..+..+++|++|++++|.--...|. .+.++++|++|++++| .++.+|..+..++ +
T Consensus 473 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~ 546 (606)
T 3vq2_A 473 TNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFN-RIETSKGILQHFPKS 546 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTS-CCCCEESCGGGSCTT
T ss_pred CCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCC-cCcccCHhHhhhccc
Confidence 99999999997 45544 56678899999999999743333343 5677899999999996 5889998888887 5
Q ss_pred CCeEEEeCCcc
Q 018079 325 LQKLTIWGCPL 335 (361)
Q Consensus 325 L~~L~l~~c~~ 335 (361)
|+.++++++|-
T Consensus 547 L~~l~l~~N~~ 557 (606)
T 3vq2_A 547 LAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSCCC
T ss_pred CcEEEccCCCc
Confidence 99999998864
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=5.6e-19 Score=160.53 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=110.9
Q ss_pred HHhcCCCCCccEEEecccCCC-CCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc--cceEeccccccce-eecccccc
Q 018079 121 LEALQPPLNVEELWIIFYGGN-IFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP--LEKLQLKNLKSVK-RVGNEFLG 195 (361)
Q Consensus 121 ~~~l~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~--L~~L~l~~~~~l~-~l~~~~~~ 195 (361)
+..+..+++|++|+++++... .+|.++..+++|+.|+++++.-...+|. +..++ |+.|+++++. +. .++..
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~--- 193 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT--- 193 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG---
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH---
Confidence 345566677777777776655 3666777777777777777632224554 55554 7777777643 33 23322
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcce
Q 018079 196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN 275 (361)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 275 (361)
+..++ |++|+++++. +.... ...+..+++|+.|+++++ .++..+..+..+++|++
T Consensus 194 -----------------~~~l~-L~~L~Ls~N~-l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 194 -----------------FANLN-LAFVDLSRNM-LEGDA-----SVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNG 248 (313)
T ss_dssp -----------------GGGCC-CSEEECCSSE-EEECC-----GGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCE
T ss_pred -----------------HhCCc-ccEEECcCCc-ccCcC-----CHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCE
Confidence 22444 7777777643 33221 124556777777777774 34433334566777777
Q ss_pred EeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccch
Q 018079 276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLE 337 (361)
Q Consensus 276 L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 337 (361)
|+++++.--..+|. .+..+++|+.|++++|.....+|.. ..+++|+.+++.+++.+.
T Consensus 249 L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCSSCCEECCCG----GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred EECcCCcccCcCCh----HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 77777543335554 4556777777777775443456654 667777777777777543
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=3.7e-18 Score=168.67 Aligned_cols=298 Identities=15% Similarity=0.108 Sum_probs=152.7
Q ss_pred CceeecCCCCcccccCcc-CCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
+++|+++++ .+..+|+. ++.+++|++|++.++.... ....+..++ |+ .+.+.+.. .....+..++++++|+
T Consensus 53 l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 53 QKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ-KLYMGFNA----IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred ceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCC-EEECCCCc----CCCCCHHHHcCCCCCC
Confidence 456777777 67777765 5677788888874333221 001122222 22 33332211 0011112345666666
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCchhhhcCccCCee
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPKWLTSLANLREL 156 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L 156 (361)
.|+++.|.....+...+...++++.|++..+. ...+ +..+..+++|++|++++|....++ ++.+++|+.|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L 197 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA 197 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEE
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-------CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhh
Confidence 66666665544333334444455555554432 1111 223444455555555554443332 2334444444
Q ss_pred eecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC--CCCCCCcccCCCCccEEEEcCCccchhh
Q 018079 157 NLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS--SSSSSPSVIAFPKLKSLEIDGMKELEEW 233 (361)
Q Consensus 157 ~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 233 (361)
+++++ .+..+ ...+ |+.|+++++. +..++..+. ..+..+.++ .....+.+..+++|+.|+++++ .+...
T Consensus 198 ~l~~n-~l~~l---~~~~~L~~L~ls~n~-l~~~~~~~~--~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~ 269 (597)
T 3oja_B 198 NVSYN-LLSTL---AIPIAVEELDASHNS-INVVRGPVN--VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKI 269 (597)
T ss_dssp ECCSS-CCSEE---ECCTTCSEEECCSSC-CCEEECSCC--SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEE
T ss_pred hcccC-ccccc---cCCchhheeeccCCc-ccccccccC--CCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCC
Confidence 44443 12111 1122 5555555422 333322211 011111111 1111234566777777777764 33332
Q ss_pred hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079 234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK 313 (361)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~ 313 (361)
.. ..+..+++|+.|+++++ .+..+|..+..+++|+.|++++| .+..+|. .+..+++|+.|++++| .+.
T Consensus 270 ~~-----~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~~l~~L~~L~L~~N-~l~ 337 (597)
T 3oja_B 270 MY-----HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER----NQPQFDRLENLYLDHN-SIV 337 (597)
T ss_dssp ES-----GGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG----GHHHHTTCSEEECCSS-CCC
T ss_pred CH-----HHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc----ccccCCCCCEEECCCC-CCC
Confidence 21 24556777788877774 56667766666777888887775 4445553 3455788999999985 456
Q ss_pred ccccccCCCCCCCeEEEeCCcc
Q 018079 314 VLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 314 ~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
.++ +..+++|+.|++++|+.
T Consensus 338 ~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 338 TLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCC--CCTTCCCSEEECCSSCE
T ss_pred CcC--hhhcCCCCEEEeeCCCC
Confidence 665 66778999999998874
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.1e-17 Score=159.63 Aligned_cols=238 Identities=20% Similarity=0.265 Sum_probs=175.6
Q ss_pred eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079 3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ 82 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 82 (361)
.++.++. .+..+|.++. .++++|++ ..+.+..+. +..+.++++|+.|+++
T Consensus 58 ~v~c~~~-~l~~iP~~~~--~~l~~L~L-------~~n~i~~~~--------------------~~~~~~l~~L~~L~Ls 107 (452)
T 3zyi_A 58 KVVCTRR-GLSEVPQGIP--SNTRYLNL-------MENNIQMIQ--------------------ADTFRHLHHLEVLQLG 107 (452)
T ss_dssp EEECCSS-CCSSCCSCCC--TTCSEEEC-------CSSCCCEEC--------------------TTTTTTCTTCCEEECC
T ss_pred EEEECCC-CcCccCCCCC--CCccEEEC-------cCCcCceEC--------------------HHHcCCCCCCCEEECC
Confidence 3444544 6667776554 56777777 444444331 1236788899999998
Q ss_pred ecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCC
Q 018079 83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLC 161 (361)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~ 161 (361)
.|.... .....+..+++|++|++++|....+|.. +..+++|+.|+++++
T Consensus 108 ~n~i~~------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 108 RNSIRQ------------------------------IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SSCCCE------------------------------ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred CCccCC------------------------------cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 886432 1134677889999999999987776654 668999999999996
Q ss_pred CCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079 162 FNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT 238 (361)
Q Consensus 162 ~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~ 238 (361)
.+..++. +..++ |+.|+++++..+..++... +..+++|++|+++++ .+..++
T Consensus 158 -~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~---- 212 (452)
T 3zyi_A 158 -PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-------------------FEGLFNLKYLNLGMC-NIKDMP---- 212 (452)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-------------------TTTCTTCCEEECTTS-CCSSCC----
T ss_pred -CcceeCHhHHhcCCcccEEeCCCCCCccccChhh-------------------ccCCCCCCEEECCCC-cccccc----
Confidence 5666665 78889 9999999988888877654 447899999999985 455443
Q ss_pred cccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-
Q 018079 239 RKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP- 316 (361)
Q Consensus 239 ~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~- 316 (361)
.+..+++|+.|+++++ .++.+ |..+..+++|+.|+++++ .+..++. -.+.++++|+.|+++++ .++.++
T Consensus 213 ---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~ 283 (452)
T 3zyi_A 213 ---NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIER---NAFDGLASLVELNLAHN-NLSSLPH 283 (452)
T ss_dssp ---CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTS-CCCEECT---TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ---cccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCC-cCceECH---HHhcCCCCCCEEECCCC-cCCccCh
Confidence 3557899999999986 56655 667788999999999986 3433321 14667899999999985 677777
Q ss_pred cccCCCCCCCeEEEeCCc
Q 018079 317 DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 317 ~~l~~l~~L~~L~l~~c~ 334 (361)
..+..+++|+.|+++++|
T Consensus 284 ~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSSTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEccCCC
Confidence 567889999999999886
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=162.56 Aligned_cols=304 Identities=16% Similarity=0.062 Sum_probs=184.7
Q ss_pred ceeecCCCCcccccCccCCCccccceecceeeecCCCC-Ccccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDG-SNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~-~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
++|+++++ .+..+|.++. ++|++|++.++...... ..+..++ |+ .+.+.+-. .....+..++++++|++|
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLR-ILIISHNR----IQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCC-EEECCSSC----CCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhcccccccc-EEecCCCc----cCCcChHHhhcccCCCEE
Confidence 57899999 8999998876 89999999655433111 1222233 33 44443311 111223457889999999
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHH--HHHhcCCCCCccEEEecccCCCCCchhhhcCccC--Ce
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQ--LLEALQPPLNVEELWIIFYGGNIFPKWLTSLANL--RE 155 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L--~~ 155 (361)
++++|.....+.. ..++++.|++..+. ... ++..+..+++|++|+++++.... ..+..+++| +.
T Consensus 75 ~Ls~N~l~~lp~~---~l~~L~~L~L~~N~-------l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 75 DLSHNKLVKISCH---PTVNLKHLDLSFNA-------FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISK 142 (520)
T ss_dssp ECCSSCCCEEECC---CCCCCSEEECCSSC-------CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEE
T ss_pred ecCCCceeecCcc---ccCCccEEeccCCc-------cccccchhhhccCCcceEEEecCcccch--hhccccccceeeE
Confidence 9998876543222 66777888887764 222 24567778888888888876543 334566677 88
Q ss_pred eeecCCCC--CCCCCC-C--------------------------CCCc-cceEeccccc---------------------
Q 018079 156 LNLSLCFN--CEHLPQ-L--------------------------GKLP-LEKLQLKNLK--------------------- 184 (361)
Q Consensus 156 L~l~~~~~--~~~l~~-l--------------------------~~l~-L~~L~l~~~~--------------------- 184 (361)
|++++|.- ....|. + ..++ |+.++++++.
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L 222 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTC
T ss_pred EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccch
Confidence 88877643 111111 1 1234 4444444321
Q ss_pred -------------------------cce-----------eecccccc-----cCC-------------------------
Q 018079 185 -------------------------SVK-----------RVGNEFLG-----IEE------------------------- 198 (361)
Q Consensus 185 -------------------------~l~-----------~l~~~~~~-----~~~------------------------- 198 (361)
.++ .++..++. ...
T Consensus 223 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302 (520)
T ss_dssp CEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTC
T ss_pred hhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccC
Confidence 111 11111100 000
Q ss_pred -CCCCCCCCCCC--CCcccCCCCccEEEEcCCccchh-hhhhhccccccccCCCccEEEEecCCCCCc---cchhccCCC
Q 018079 199 -SSEDGPSSSSS--SPSVIAFPKLKSLEIDGMKELEE-WNYRITRKENISIMPRLSSLEVSSCNKLKA---LPDYLLQMT 271 (361)
Q Consensus 199 -~~~~~~~~~~~--~~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---l~~~~~~l~ 271 (361)
+..+.++.... .+....+++|++|+++++. +.. .+ ..+..+++|+.|+++++ .++. +|..+..++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVF------ENCGHLTELETLILQMN-QLKELSKIAEMTTQMK 374 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTT------TTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCT
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCc-cChhhh------hhhccCCCCCEEEccCC-ccCccccchHHHhhCC
Confidence 00000000000 0001567788888888753 333 22 24567899999999886 4553 456678899
Q ss_pred CcceEeeccCCC--------cccCCcccccccCC----------C-CCccEEEEecCCCCCccccccCCCCCCCeEEEeC
Q 018079 272 VLQNLRIFFCEN--------MEELPILEDHRTTD----------I-PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWG 332 (361)
Q Consensus 272 ~L~~L~l~~c~~--------l~~lp~L~~L~l~~----------l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 332 (361)
+|++|+++++.- +..+++|++|++++ + ++|+.|++++| .++.+|..+..+++|++|++++
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCC
Confidence 999999988632 23345788888776 2 68999999986 6779998788999999999999
Q ss_pred Cc
Q 018079 333 CP 334 (361)
Q Consensus 333 c~ 334 (361)
|.
T Consensus 454 N~ 455 (520)
T 2z7x_B 454 NQ 455 (520)
T ss_dssp SC
T ss_pred Cc
Confidence 85
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=158.26 Aligned_cols=238 Identities=21% Similarity=0.304 Sum_probs=176.2
Q ss_pred eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079 3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ 82 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 82 (361)
.++.++. .+..+|.++. .++++|++ ..+.+..+. ...+.++++|+.|+++
T Consensus 47 ~v~c~~~-~l~~iP~~~~--~~l~~L~L-------~~n~i~~~~--------------------~~~~~~l~~L~~L~Ls 96 (440)
T 3zyj_A 47 KVICVRK-NLREVPDGIS--TNTRLLNL-------HENQIQIIK--------------------VNSFKHLRHLEILQLS 96 (440)
T ss_dssp EEECCSC-CCSSCCSCCC--TTCSEEEC-------CSCCCCEEC--------------------TTTTSSCSSCCEEECC
T ss_pred EEEeCCC-CcCcCCCCCC--CCCcEEEc-------cCCcCCeeC--------------------HHHhhCCCCCCEEECC
Confidence 3445555 6677777654 56777777 444444332 1236788899999999
Q ss_pred ecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeeecCC
Q 018079 83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLC 161 (361)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~ 161 (361)
.|.... . ....+..+++|++|++++|....+|. .+..+++|+.|+++++
T Consensus 97 ~n~i~~----------------------------i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 97 RNHIRT----------------------------I--EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SSCCCE----------------------------E--CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred CCcCCc----------------------------c--ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 886432 1 13567788999999999998777665 5678999999999986
Q ss_pred CCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079 162 FNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT 238 (361)
Q Consensus 162 ~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~ 238 (361)
.+..++. +..++ |+.|+++++..+..++... +..+++|++|+++++ .+..++
T Consensus 147 -~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~---- 201 (440)
T 3zyj_A 147 -PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-------------------FEGLSNLRYLNLAMC-NLREIP---- 201 (440)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-------------------TTTCSSCCEEECTTS-CCSSCC----
T ss_pred -cccccCHHHhhhCcccCEeCCCCCCCcceeCcch-------------------hhcccccCeecCCCC-cCcccc----
Confidence 5666655 77889 9999999888888777643 447899999999985 455443
Q ss_pred cccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-
Q 018079 239 RKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP- 316 (361)
Q Consensus 239 ~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~- 316 (361)
.+..+++|+.|+++++ .++.+ +..+..+++|+.|+++++ .++.++. -.+.++++|+.|+++++ .++.++
T Consensus 202 ---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 202 ---NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIER---NAFDNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp ---CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECT---TSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred ---ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEECh---hhhcCCCCCCEEECCCC-CCCccCh
Confidence 3557899999999986 56665 556778999999999985 4444331 24667899999999985 677777
Q ss_pred cccCCCCCCCeEEEeCCc
Q 018079 317 DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 317 ~~l~~l~~L~~L~l~~c~ 334 (361)
..+..+++|+.|+++++|
T Consensus 273 ~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTSSCTTCCEEECCSSC
T ss_pred hHhccccCCCEEEcCCCC
Confidence 567889999999999887
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=1.2e-17 Score=159.24 Aligned_cols=247 Identities=16% Similarity=0.187 Sum_probs=145.1
Q ss_pred hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHh--cCCCCCccEEEecccCCCCC-ch
Q 018079 69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEA--LQPPLNVEELWIIFYGGNIF-PK 145 (361)
Q Consensus 69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~-p~ 145 (361)
.+.++++|++|++++|.........+...++++.|++..+.- ....+.. +..+++|++|+++++..... |.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC------CccccCcccccCcccCCEEECCCCccCccCcc
Confidence 377889999999999887665566677788888888887641 1223333 77888899999998877664 44
Q ss_pred h-hhcCccCCeeeecCCCCCCCCCC--CCCC--c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCc
Q 018079 146 W-LTSLANLRELNLSLCFNCEHLPQ--LGKL--P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKL 219 (361)
Q Consensus 146 ~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l--~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 219 (361)
. +..+++|+.|+++++. +..++. +..+ + ++.++++++. +..++........ ...+..+++|
T Consensus 148 ~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~-----------~~~~~~~~~L 214 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEK-----------CGNPFKNTSI 214 (455)
T ss_dssp GGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHH-----------HCCTTTTCEE
T ss_pred cccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCc-ccccchhhccccc-----------ccccccccee
Confidence 4 6788899999998873 443322 4444 4 8888888644 4443332211000 0001234567
Q ss_pred cEEEEcCCccchhhhhhhcc-------------------------------ccccc--cCCCccEEEEecCCCCCccchh
Q 018079 220 KSLEIDGMKELEEWNYRITR-------------------------------KENIS--IMPRLSSLEVSSCNKLKALPDY 266 (361)
Q Consensus 220 ~~L~L~~~~~l~~~~~~~~~-------------------------------~~~~~--~l~~L~~L~l~~c~~l~~l~~~ 266 (361)
++|+++++.-....+..+.. ...+. ..++|+.|+++++......|..
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 77777664321111110000 00000 1245566666554322223444
Q ss_pred ccCCCCcceEeeccCC-------CcccCCcccccccC-------------CCCCccEEEEecCCCCCcc-ccccCCCCCC
Q 018079 267 LLQMTVLQNLRIFFCE-------NMEELPILEDHRTT-------------DIPRLSSLRIGYCPKLKVL-PDCLLRTTTL 325 (361)
Q Consensus 267 ~~~l~~L~~L~l~~c~-------~l~~lp~L~~L~l~-------------~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L 325 (361)
+..+++|++|+++++. .+..+++|+.|+++ ++++|++|++++| .++.+ |..+..+++|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccc
Confidence 5556666666665542 12233444444443 3788999999886 44554 6778889999
Q ss_pred CeEEEeCCcc
Q 018079 326 QKLTIWGCPL 335 (361)
Q Consensus 326 ~~L~l~~c~~ 335 (361)
++|++++|.-
T Consensus 374 ~~L~L~~N~l 383 (455)
T 3v47_A 374 KELALDTNQL 383 (455)
T ss_dssp CEEECCSSCC
T ss_pred cEEECCCCcc
Confidence 9999988753
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=5.3e-18 Score=166.35 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=62.7
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc-cchh-ccCCCCcceEeeccCCCcc----cC-
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-LPDY-LLQMTVLQNLRIFFCENME----EL- 287 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~-~~~l~~L~~L~l~~c~~l~----~l- 287 (361)
.+++|++|+++++ .+..++. + ...+..+++|+.|+++++ .++. +|.. +..+++|+.|+++++.--. .+
T Consensus 375 ~l~~L~~L~L~~N-~l~~~~~-~--~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 375 TLKRLQTLILQRN-GLKNFFK-V--ALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp SCSSCCEEECCSS-CCCBTTH-H--HHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred ccCCCCEEECCCC-CcCCccc-c--hhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 5555666666553 2332211 0 012334555555555553 2332 4432 2334555555555432111 11
Q ss_pred Cccccccc------------CCCCCccEEEEecCCCCCccccc-cCCCCCCCeEEEeCCcc
Q 018079 288 PILEDHRT------------TDIPRLSSLRIGYCPKLKVLPDC-LLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 288 p~L~~L~l------------~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~ 335 (361)
++|+.|++ .++++|+.|+++++ .++.+|.. +..+++|+.++++++|-
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 23333333 34788999999884 67788866 88899999999998864
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.7e-17 Score=150.56 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=36.9
Q ss_pred ccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCc--cccccc-CCCCCccEEEEecCCCC--Cccccc
Q 018079 244 SIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPI--LEDHRT-TDIPRLSSLRIGYCPKL--KVLPDC 318 (361)
Q Consensus 244 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--L~~L~l-~~l~~L~~L~l~~c~~l--~~l~~~ 318 (361)
..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.++. +..... ...++|+.|++.+++.. ...|..
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 34555555555553 34455555555555555555542 3333331 000000 01334555555554332 122244
Q ss_pred cCCCCCCCeEEEeCC
Q 018079 319 LLRTTTLQKLTIWGC 333 (361)
Q Consensus 319 l~~l~~L~~L~l~~c 333 (361)
+..+++|+.++++++
T Consensus 316 ~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNY 330 (332)
T ss_dssp GTTBCCSTTEEC---
T ss_pred ccccchhhhhhcccc
Confidence 455555555555544
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=6.7e-17 Score=147.76 Aligned_cols=172 Identities=12% Similarity=0.173 Sum_probs=80.7
Q ss_pred CCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCC--CCCC-CCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079 128 LNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCE--HLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED 202 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~--~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 202 (361)
++|++|+++++....++. .+..+++|+.|+++++.-.. ..+. +..++ |+.|+++++. ++.++..
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~---------- 189 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG---------- 189 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS----------
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc----------
Confidence 455666665555444332 34455566666665542211 1111 44455 6666655432 3333221
Q ss_pred CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccC
Q 018079 203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFC 281 (361)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 281 (361)
.+++|++|+++++ .+..... ..+..+++|+.|+++++ .++.++. .+..+++|++|+++++
T Consensus 190 ------------~~~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 190 ------------LPPSLTELHLDGN-KITKVDA-----ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp ------------CCTTCSEEECTTS-CCCEECT-----GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS
T ss_pred ------------ccccCCEEECCCC-cCCccCH-----HHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC
Confidence 2255566666553 2332211 23345556666666553 3443332 3445556666666654
Q ss_pred CCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccC------CCCCCCeEEEeCCcc
Q 018079 282 ENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLL------RTTTLQKLTIWGCPL 335 (361)
Q Consensus 282 ~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~------~l~~L~~L~l~~c~~ 335 (361)
.+..+|. .+..+++|+.|++++| .++.++ ..+. ..++++.+++.++|.
T Consensus 251 -~l~~lp~----~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 251 -KLVKVPG----GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp -CCSSCCT----TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred -cCccCCh----hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 3444443 3444556666666553 344444 2221 124555666666553
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=9e-17 Score=146.91 Aligned_cols=285 Identities=14% Similarity=0.069 Sum_probs=189.4
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR 78 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~ 78 (361)
+++++++++ .+..+|..+. .++++|++.++.... ....+..++ |+ .+.+.+.. +. ...+..+.++++|++
T Consensus 33 l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~-~L~L~~n~-l~---~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 33 LRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLH-TLILINNK-IS---KISPGAFAPLVKLER 104 (330)
T ss_dssp TTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCC-EEECCSSC-CC---CBCTTTTTTCTTCCE
T ss_pred CeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCC-EEECCCCc-CC---eeCHHHhcCCCCCCE
Confidence 466777777 7777776654 567777775444331 111233333 33 44443211 11 111234778899999
Q ss_pred EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCC---CchhhhcCccCC
Q 018079 79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNI---FPKWLTSLANLR 154 (361)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~---~p~~~~~l~~L~ 154 (361)
|+++.|.....+.. ..++++.+++..+. ...+ ...+..+++|++|+++++.... .+..+..+++|+
T Consensus 105 L~Ls~n~l~~l~~~---~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 105 LYLSKNQLKELPEK---MPKTLQELRVHENE-------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp EECCSSCCSBCCSS---CCTTCCEEECCSSC-------CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred EECCCCcCCccChh---hcccccEEECCCCc-------ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 99988876543322 22677888887654 2222 3456788999999999987642 466678899999
Q ss_pred eeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079 155 ELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW 233 (361)
Q Consensus 155 ~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 233 (361)
.|+++++ .+..+|.. ..+ |+.|+++++. ++.++... +..+++|++|+++++ .+...
T Consensus 175 ~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~Ls~n-~l~~~ 231 (330)
T 1xku_A 175 YIRIADT-NITTIPQG-LPPSLTELHLDGNK-ITKVDAAS-------------------LKGLNNLAKLGLSFN-SISAV 231 (330)
T ss_dssp EEECCSS-CCCSCCSS-CCTTCSEEECTTSC-CCEECTGG-------------------GTTCTTCCEEECCSS-CCCEE
T ss_pred EEECCCC-ccccCCcc-ccccCCEEECCCCc-CCccCHHH-------------------hcCCCCCCEEECCCC-cCcee
Confidence 9999996 56666652 227 9999999854 56654332 447899999999985 34443
Q ss_pred hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcc--ccc-ccCCCCCccEEEEecCC
Q 018079 234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPIL--EDH-RTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L--~~L-~l~~l~~L~~L~l~~c~ 310 (361)
+. ..+..+++|+.|+++++ .++.+|..+..+++|++|+++++ .++.++.- ... .....++|+.+++.+++
T Consensus 232 ~~-----~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 232 DN-----GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CT-----TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred Ch-----hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 32 24567999999999996 68899999999999999999985 56665521 100 11125789999999876
Q ss_pred CCC--ccccccCCCCCCCeEEEeCC
Q 018079 311 KLK--VLPDCLLRTTTLQKLTIWGC 333 (361)
Q Consensus 311 ~l~--~l~~~l~~l~~L~~L~l~~c 333 (361)
... ..|..+..+++++.++++++
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccCccccccccceeEEEeccc
Confidence 432 23478889999999999876
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=8.9e-18 Score=164.09 Aligned_cols=128 Identities=13% Similarity=-0.042 Sum_probs=61.8
Q ss_pred CceeecCCCCcccccC-ccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
|++|++++| .+..++ ..++++++|++|++.++.... ....+..++ |+ .+.+.+-. .....+..++++++|+
T Consensus 28 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 28 MKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE-HLDLSDNH----LSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTSC----CCSCCHHHHTTCTTCC
T ss_pred ccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC-EEECCCCc----cCccCHHHhccCCCCc
Confidence 567888887 666664 457888888888885443321 111222222 22 33333211 1111122355666666
Q ss_pred eEEEEecCCCCC-CcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCC
Q 018079 78 RLHLQFGGKDED-WRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGG 140 (361)
Q Consensus 78 ~L~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 140 (361)
+|+++.|..... ....+...++++.|++..+.... .+ ...+..+++|++|+++++..
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS------EIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEEEEEEEETTC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCcccc------ccCHhhhhcccccCeeeccCCcc
Confidence 666666554331 12234455555556555442110 11 12344455555555555543
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.7e-17 Score=150.08 Aligned_cols=245 Identities=18% Similarity=0.193 Sum_probs=177.4
Q ss_pred ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079 2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL 81 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l 81 (361)
+.++++++ .+..+|.++. .+|++|++ ..+.+..++ ...+.++++|+.|++
T Consensus 10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L-------~~n~l~~i~--------------------~~~~~~l~~L~~L~L 59 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGIP--SSATRLEL-------ESNKLQSLP--------------------HGVFDKLTQLTKLSL 59 (306)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCCEEEC-------CSSCCCCCC--------------------TTTTTTCTTCSEEEC
T ss_pred CEEEcCCC-CcccCCCCCC--CCCCEEEC-------CCCccCccC--------------------HhHhhccccCCEEEC
Confidence 35677777 7889998664 68899988 455554432 012578889999999
Q ss_pred EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCC
Q 018079 82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLC 161 (361)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~ 161 (361)
+.|.... ..........+++|++|+++++....+|..+..+++|+.|+++++
T Consensus 60 ~~n~l~~----------------------------~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n 111 (306)
T 2z66_A 60 SSNGLSF----------------------------KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111 (306)
T ss_dssp CSSCCCE----------------------------EEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred CCCccCc----------------------------ccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence 9886532 111112233578999999999987778887889999999999997
Q ss_pred CCCCCCC---CCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079 162 FNCEHLP---QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI 237 (361)
Q Consensus 162 ~~~~~l~---~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~ 237 (361)
.+..++ .+..++ |+.|+++++. +....... +..+++|++|+++++. +.....
T Consensus 112 -~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n~-l~~~~~-- 167 (306)
T 2z66_A 112 -NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI-------------------FNGLSSLEVLKMAGNS-FQENFL-- 167 (306)
T ss_dssp -EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTT-------------------TTTCTTCCEEECTTCE-EGGGEE--
T ss_pred -cccccccchhhhhccCCCEEECCCCc-CCccchhh-------------------cccCcCCCEEECCCCc-cccccc--
Confidence 444443 377888 9999999764 44443322 4478999999999863 433111
Q ss_pred ccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc
Q 018079 238 TRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP 316 (361)
Q Consensus 238 ~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~ 316 (361)
...+..+++|+.|+++++ .++.+ |..+..+++|++|+++++ .+..++. ..+.++++|+.|++++|......+
T Consensus 168 --~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 168 --PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT---FPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp --CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCS---GGGTTCTTCCEEECTTSCCCBCSS
T ss_pred --hhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccCh---hhccCcccCCEeECCCCCCcccCH
Confidence 235668999999999986 56665 567788999999999985 4544442 246678999999999975555566
Q ss_pred cccCCCC-CCCeEEEeCCcc
Q 018079 317 DCLLRTT-TLQKLTIWGCPL 335 (361)
Q Consensus 317 ~~l~~l~-~L~~L~l~~c~~ 335 (361)
..+..++ +|+.|++++++-
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCE
T ss_pred HHHHhhhccCCEEEccCCCe
Confidence 7788885 999999998864
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=165.46 Aligned_cols=222 Identities=17% Similarity=0.133 Sum_probs=108.4
Q ss_pred hhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-
Q 018079 96 EEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP- 174 (361)
Q Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~- 174 (361)
..++++.+++..+. ...++..+..+ +|++|++.+|....+|. ..+++|+.|++.++......+. ..++
T Consensus 280 ~l~~L~~L~l~~~~-------l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~ 348 (570)
T 2z63_A 280 CLTNVSSFSLVSVT-------IERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPS 348 (570)
T ss_dssp GGTTCSEEEEESCE-------ECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTT
T ss_pred CcCcccEEEecCcc-------chhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCC
Confidence 34555555555443 22344445555 77888887777666665 3556666666666532222222 4445
Q ss_pred cceEeccccccceee---cccccccCCCCCCCCCCCC---CCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCC
Q 018079 175 LEKLQLKNLKSVKRV---GNEFLGIEESSEDGPSSSS---SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR 248 (361)
Q Consensus 175 L~~L~l~~~~~l~~l---~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~ 248 (361)
|+.|+++++. +... +..+.....+..+.++... ..+.+..+++|++|++.++. +..... ...+..+++
T Consensus 349 L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----~~~~~~l~~ 422 (570)
T 2z63_A 349 LEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSE----FSVFLSLRN 422 (570)
T ss_dssp CCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTT----SCTTTTCTT
T ss_pred CCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccc----hhhhhcCCC
Confidence 5555555432 2221 1111111111111111110 00013345555555555432 221111 112334444
Q ss_pred ccEEEEecCCCCCccchhccCCCCcceEeeccCC--------CcccCCcccccc-------------cCCCCCccEEEEe
Q 018079 249 LSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE--------NMEELPILEDHR-------------TTDIPRLSSLRIG 307 (361)
Q Consensus 249 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~--------~l~~lp~L~~L~-------------l~~l~~L~~L~l~ 307 (361)
|+.|++++|......|..+..+++|++|++++|. .+..+++|+.|+ +.++++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 5555544442222233333444444444444432 112233344443 3447899999999
Q ss_pred cCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079 308 YCPKLKVLP-DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 308 ~c~~l~~l~-~~l~~l~~L~~L~l~~c~~ 335 (361)
+| .++.++ ..+..+++|+.|++++|+-
T Consensus 503 ~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 503 SN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp SS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 96 566665 6789999999999999874
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=155.38 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=91.9
Q ss_pred cCCCCCccEEEecccCCCCCch--hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCC
Q 018079 124 LQPPLNVEELWIIFYGGNIFPK--WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE 198 (361)
Q Consensus 124 l~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~ 198 (361)
+..+++|++|+++++....+|. .+..+++|+.|++++|..+..++. +..++ |+.|+++++. +.......
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~----- 193 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS----- 193 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-----
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH-----
Confidence 3445555555555555444443 344555555555555433333322 44455 5555555432 23322111
Q ss_pred CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh----ccCCCCcc
Q 018079 199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY----LLQMTVLQ 274 (361)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~l~~L~ 274 (361)
+..+++|++|+++++. +..++. ..+..+++|+.|+++++ .++.++.. ......++
T Consensus 194 --------------l~~l~~L~~L~l~~n~-l~~~~~-----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 194 --------------LKSIQNVSHLILHMKQ-HILLLE-----IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp --------------TTTCSEEEEEEEECSC-STTHHH-----HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCC
T ss_pred --------------HhccccCCeecCCCCc-cccchh-----hhhhhcccccEEECCCC-ccccccccccccccccchhh
Confidence 2245555555555532 333322 11223555555555553 23322211 11133444
Q ss_pred eEeeccCCC----cccCCcccccccCCCCCccEEEEecCCCCCccccc-cCCCCCCCeEEEeCCcc
Q 018079 275 NLRIFFCEN----MEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC-LLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 275 ~L~l~~c~~----l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~ 335 (361)
.++++++.- +..+|. .+.++++|+.|++++| .++.+|.. +..+++|++|++++|+-
T Consensus 253 ~l~L~~~~l~~~~l~~l~~----~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMK----LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EEEEESCBCCHHHHHHHHH----HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccccccCcchhhhHH----HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 444444210 011221 2455889999999985 77889966 48999999999999864
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.73 E-value=1.8e-16 Score=158.91 Aligned_cols=268 Identities=13% Similarity=-0.000 Sum_probs=130.9
Q ss_pred CceeecCCCCcccccC-ccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChH-HHH----HhhcCC
Q 018079 1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVD-EAE----RLQLSN 72 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~-~~~----~~~l~~ 72 (361)
|++|++++| .+..++ ..++.+++|++|++.++.... ....+..+. ++ .+.+.+........ ... ...+.+
T Consensus 250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR-YLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC-EEECTTCBCCC------CCEECTTTTTT
T ss_pred CCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc-EEeccchhhhcccccccccccChhhccc
Confidence 456666666 555544 446777777777774433221 011122222 22 33332100000000 000 013567
Q ss_pred CCCCceEEEEecCCCCCCcchhhhhhcccccccccccc-cccchhhHHHHHhcCCCCCccEEEecccCCCC-CchhhhcC
Q 018079 73 KKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEG-RRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSL 150 (361)
Q Consensus 73 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l 150 (361)
+++|++|+++.|.........+...++++.+++..+.. .... .......+ ..++|++|++++|.... .|.++..+
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l--~~~~f~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL--TNETFVSL-AHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE--CTTTTGGG-TTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc--chhhhccc-ccCcCceEECCCCCCCeEChhhhhCC
Confidence 77888888877766555555566667777777665320 0000 00000000 12456666666665544 34455566
Q ss_pred ccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeeccccc-ccCCCCCCCCCCC------CCCCcccCCCCcc
Q 018079 151 ANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFL-GIEESSEDGPSSS------SSSPSVIAFPKLK 220 (361)
Q Consensus 151 ~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~------~~~~~l~~~~~L~ 220 (361)
++|+.|+++++.-...++. +..++ |+.|+++++. +..++...+ ....+..+.+... .....+..+++|+
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 7777777776533233442 55666 7777776644 333332211 1111111111100 1112255677777
Q ss_pred EEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch---------hccCCCCcceEeeccC
Q 018079 221 SLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD---------YLLQMTVLQNLRIFFC 281 (361)
Q Consensus 221 ~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~---------~~~~l~~L~~L~l~~c 281 (361)
.|+++++ .+..++. ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++
T Consensus 484 ~L~Ls~N-~l~~i~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 484 ILDLSNN-NIANIND-----DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp EEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred EEECCCC-CCCcCCh-----hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 7777764 3443332 33556777888888774 4544321 2455777788877764
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=5.3e-17 Score=162.72 Aligned_cols=313 Identities=15% Similarity=0.130 Sum_probs=168.0
Q ss_pred CceeecCCCCcccccCc-cCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
+++|+++++ .+..+|. .++++++|++|++.++.... ....+..++ |+ .+.+.+.. +. ......++++++|+
T Consensus 27 l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~-l~---~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 27 ITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK-VLNLQHNE-LS---QLSDKTFAFCTNLT 100 (680)
T ss_dssp CSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC-EEECCSSC-CC---CCCTTTTTTCTTCS
T ss_pred CcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC-EEECCCCc-cC---ccChhhhccCCCCC
Confidence 467777777 6777665 37777777777774433221 011122222 33 33333211 11 11112366777777
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhh--cCccCC
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLT--SLANLR 154 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~--~l~~L~ 154 (361)
+|+++.|.........+...++++.|++..+.- ....+..+..+++|++|+++++....++. .+. .+++|+
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL------SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC------SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcc------cccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 777777766555555566667777777766531 11112345566777777777766555433 222 346677
Q ss_pred eeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccc---cccCCCCCCCCCCC----CCCCcccCC--CCccEE
Q 018079 155 ELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEF---LGIEESSEDGPSSS----SSSPSVIAF--PKLKSL 222 (361)
Q Consensus 155 ~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~---~~~~~~~~~~~~~~----~~~~~l~~~--~~L~~L 222 (361)
.|+++++ .+..+++ +..++ |+.+.+.++.-........ .....+..+.++.. .....+..+ ++|++|
T Consensus 175 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred EEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 7777765 3333322 34444 4444444321000000000 00000000111100 000113333 348889
Q ss_pred EEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc-cchhccCCCCcceEeeccCCC-----cccCCcccccccC
Q 018079 223 EIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-LPDYLLQMTVLQNLRIFFCEN-----MEELPILEDHRTT 296 (361)
Q Consensus 223 ~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~-----l~~lp~L~~L~l~ 296 (361)
+++++. +...+. ..+..+++|+.|+++++ .+.. .|..+..+++|+.|+++++.. +..+|.+....++
T Consensus 254 ~Ls~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 254 DLSYNN-LNVVGN-----DSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp ECTTSC-CCEECT-----TTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred ECCCCC-cCccCc-----ccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 888753 433322 34567889999999886 4444 455677789999999886422 1256666666777
Q ss_pred CCCCccEEEEecCCCCCcc-ccccCCCCCCCeEEEeCCc
Q 018079 297 DIPRLSSLRIGYCPKLKVL-PDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 297 ~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~ 334 (361)
.+++|+.|++++| .+..+ +..+..+++|++|++++|.
T Consensus 327 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 327 WLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCc
Confidence 7888888888875 44444 4567788888888887764
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=1.1e-16 Score=156.91 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=85.6
Q ss_pred cCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc---chhccCCCCcceEeeccCCC-------
Q 018079 214 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL---PDYLLQMTVLQNLRIFFCEN------- 283 (361)
Q Consensus 214 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~l~~c~~------- 283 (361)
..+++|++|+++++. +.... ...+..+++|+.|+++++ .++.+ |..+..+++|++|+++++.-
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSV-----FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTT-----TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCc-cccch-----hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 567888888888753 33321 134568899999999885 56654 45577899999999998642
Q ss_pred -cccCCcccccccCC----------C-CCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 284 -MEELPILEDHRTTD----------I-PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 284 -l~~lp~L~~L~l~~----------l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
+..+++|++|++++ + ++|+.|++++| .++.+|.++..+++|+.|++++|.-
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCC
Confidence 22345778887766 3 68999999986 7889998788999999999999853
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=3.6e-17 Score=153.06 Aligned_cols=257 Identities=15% Similarity=0.065 Sum_probs=172.4
Q ss_pred CceeecCCCCcccccCc-cCCCccccceecceeeecCCC-CCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGVD-GSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~-~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
|++|++++| .+..+|. .++.+++|++|++.++..... ...+..++ |+ .+.+.+.. +. ......+.++++|+
T Consensus 71 L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~-l~---~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 71 VELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT-VLVLERND-LS---SLPRGIFHNTPKLT 144 (390)
T ss_dssp CSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSC-CC---CCCTTTTTTCTTCC
T ss_pred CcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC-EEECCCCc-cC---cCCHHHhcCCCCCc
Confidence 688999998 7888775 689999999999965544321 11233333 33 44443311 11 11112357788889
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCc-------------------cEEEeccc
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNV-------------------EELWIIFY 138 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L-------------------~~L~l~~~ 138 (361)
+|+++.|.........+...++++.|++..+.-.. + .+..+++| ++|+++++
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------V--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------C--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------c--ccccccccceeecccccccccCCCCcceEEECCCC
Confidence 99888887766656667777888888887754211 1 12333444 44555544
Q ss_pred CCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCC
Q 018079 139 GGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP 217 (361)
Q Consensus 139 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (361)
....+|.. .+++|+.|+++++ .+...+.+..++ |+.|+++++. +..+.... +..++
T Consensus 216 ~l~~~~~~--~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~-------------------~~~l~ 272 (390)
T 3o6n_A 216 SINVVRGP--VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-------------------FVKMQ 272 (390)
T ss_dssp CCCEEECC--CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGG-------------------GTTCS
T ss_pred eeeecccc--ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChhH-------------------ccccc
Confidence 44333322 3467888888886 555556677888 9999998754 55543322 44789
Q ss_pred CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCC
Q 018079 218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTD 297 (361)
Q Consensus 218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~ 297 (361)
+|+.|+++++ .+..++. ....+++|+.|+++++ .++.+|..+..+++|+.|+++++. +..+ .+..
T Consensus 273 ~L~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~------~~~~ 337 (390)
T 3o6n_A 273 RLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL------KLST 337 (390)
T ss_dssp SCCEEECCSS-CCCEEEC------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC------CCCT
T ss_pred cCCEEECCCC-cCcccCc------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-ccee------Cchh
Confidence 9999999985 5555543 3457899999999996 688898888889999999999963 4444 4667
Q ss_pred CCCccEEEEecCC
Q 018079 298 IPRLSSLRIGYCP 310 (361)
Q Consensus 298 l~~L~~L~l~~c~ 310 (361)
+++|+.|++++++
T Consensus 338 ~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 338 HHTLKNLTLSHND 350 (390)
T ss_dssp TCCCSEEECCSSC
T ss_pred hccCCEEEcCCCC
Confidence 8999999999864
No 43
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=3.7e-16 Score=154.07 Aligned_cols=250 Identities=19% Similarity=0.104 Sum_probs=157.6
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKN 75 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~ 75 (361)
+++|+++++ .+..+|..+. ++|++|++.++ .+..++ |+ .+.+.+.. +..+. ..+++
T Consensus 42 l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-------~l~~lp~~l~~L~-~L~Ls~N~-l~~lp-------~~l~~ 102 (622)
T 3g06_A 42 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-------NLTSLPALPPELR-TLEVSGNQ-LTSLP-------VLPPG 102 (622)
T ss_dssp CCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-------CCSCCCCCCTTCC-EEEECSCC-CSCCC-------CCCTT
T ss_pred CcEEEecCC-CcCccChhhC--CCCcEEEecCC-------CCCCCCCcCCCCC-EEEcCCCc-CCcCC-------CCCCC
Confidence 468999999 8999998876 79999999544 333333 33 44443311 11110 15678
Q ss_pred CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCe
Q 018079 76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRE 155 (361)
Q Consensus 76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~ 155 (361)
|++|+++.|.....+. ...+++.|++..+. ...++. .+++|++|++++|....+|. .+.+|+.
T Consensus 103 L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~-------l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~ 165 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA----LPSGLCKLWIFGNQ-------LTSLPV---LPPGLQELSVSDNQLASLPA---LPSELCK 165 (622)
T ss_dssp CCEEEECSCCCCCCCC----CCTTCCEEECCSSC-------CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred CCEEECcCCcCCCCCC----CCCCcCEEECCCCC-------CCcCCC---CCCCCCEEECcCCcCCCcCC---ccCCCCE
Confidence 8888888776544221 33445555555443 111111 12556666666665544543 2345666
Q ss_pred eeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhh
Q 018079 156 LNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN 234 (361)
Q Consensus 156 L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 234 (361)
|++++| .+..+| ..++ |+.|+++++. ++.++. .+++|+.|++.++ .+..++
T Consensus 166 L~L~~N-~l~~l~--~~~~~L~~L~Ls~N~-l~~l~~-----------------------~~~~L~~L~L~~N-~l~~l~ 217 (622)
T 3g06_A 166 LWAYNN-QLTSLP--MLPSGLQELSVSDNQ-LASLPT-----------------------LPSELYKLWAYNN-RLTSLP 217 (622)
T ss_dssp EECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-----------------------CCTTCCEEECCSS-CCSSCC
T ss_pred EECCCC-CCCCCc--ccCCCCcEEECCCCC-CCCCCC-----------------------ccchhhEEECcCC-cccccC
Confidence 666654 444444 3345 6666666532 343332 3467888888764 444443
Q ss_pred hhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCc
Q 018079 235 YRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKV 314 (361)
Q Consensus 235 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~ 314 (361)
. .+++|+.|+++++ .++.+| ..+++|+.|+++++ .++.+|. .+++|+.|++++| .++.
T Consensus 218 ~---------~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 218 A---------LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp C---------CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCS
T ss_pred C---------CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCc
Confidence 3 4578888888875 677777 34678888888885 6666664 4688999999985 7779
Q ss_pred cccccCCCCCCCeEEEeCCccc
Q 018079 315 LPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 315 l~~~l~~l~~L~~L~l~~c~~l 336 (361)
+|..+.++++|+.|++++|+-.
T Consensus 276 lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCCCC
T ss_pred CCHHHhhccccCEEEecCCCCC
Confidence 9988999999999999999743
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=162.05 Aligned_cols=32 Identities=19% Similarity=0.027 Sum_probs=19.6
Q ss_pred CceeecCCCCccccc-CccCCCccccceeccee
Q 018079 1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFV 32 (361)
Q Consensus 1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~ 32 (361)
|++|++++|..+..+ |..++++++|++|++.+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 566777666444455 44567777777777643
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.3e-16 Score=157.60 Aligned_cols=258 Identities=14% Similarity=0.047 Sum_probs=173.7
Q ss_pred CceeecCCCCcccccCc-cCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
|++|++++| .+..+|+ .++.+++|++|++.++.... ....+..++ |+ .+.+.+.. +. ...+..++++++|+
T Consensus 77 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~-l~---~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 77 VELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT-VLVLERND-LS---SLPRGIFHNTPKLT 150 (597)
T ss_dssp CSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSC-CC---CCCTTTTTTCTTCC
T ss_pred CcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC-EEEeeCCC-CC---CCCHHHhccCCCCC
Confidence 688999999 7888775 69999999999996655432 111223333 33 44443311 11 11122357888999
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEE-------------------eccc
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELW-------------------IIFY 138 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~-------------------l~~~ 138 (361)
.|+++.|.........+...++++.|++..+.- ..+ .+..+++|++|+ ++++
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~--~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-------THV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-------SBC--CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-------CCc--ChhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence 999998887766666677788888888887641 111 123344455544 4444
Q ss_pred CCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCC
Q 018079 139 GGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP 217 (361)
Q Consensus 139 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (361)
....++.. ..++|+.|++++| .+...+.+..++ |+.|+++++. +..+++.. +..++
T Consensus 222 ~l~~~~~~--~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~-------------------~~~l~ 278 (597)
T 3oja_B 222 SINVVRGP--VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-------------------FVKMQ 278 (597)
T ss_dssp CCCEEECS--CCSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGG-------------------GTTCS
T ss_pred cccccccc--cCCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHH-------------------hcCcc
Confidence 43333322 2357888888886 455555577888 9999998754 55543322 44789
Q ss_pred CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCC
Q 018079 218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTD 297 (361)
Q Consensus 218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~ 297 (361)
+|+.|+++++ .+..++. ....+++|+.|++++| .+..+|..+..+++|+.|++++|. +..+ .+..
T Consensus 279 ~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~------~~~~ 343 (597)
T 3oja_B 279 RLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL------KLST 343 (597)
T ss_dssp SCCEEECTTS-CCCEEEC------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC------CCCT
T ss_pred CCCEEECCCC-CCCCCCc------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCc------Chhh
Confidence 9999999985 5555543 3457999999999996 677899888889999999999963 4333 4667
Q ss_pred CCCccEEEEecCCC
Q 018079 298 IPRLSSLRIGYCPK 311 (361)
Q Consensus 298 l~~L~~L~l~~c~~ 311 (361)
+++|+.|++++++-
T Consensus 344 ~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 344 HHTLKNLTLSHNDW 357 (597)
T ss_dssp TCCCSEEECCSSCE
T ss_pred cCCCCEEEeeCCCC
Confidence 89999999998653
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=9.5e-18 Score=152.64 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=119.2
Q ss_pred CCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079 126 PPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED 202 (361)
Q Consensus 126 ~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 202 (361)
..++|++|+++++....++. ..+++|+.|+++++ .+..++. +..++ |+.|+++++. +..++...+
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-------- 164 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL-------- 164 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGG--------
T ss_pred CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHH--------
Confidence 34778888888877655543 24677888888876 4554443 56677 8888888643 555443322
Q ss_pred CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCC
Q 018079 203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE 282 (361)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 282 (361)
...+++|++|+++++ .+..++. ...+++|+.|+++++ .++.+|..+..+++|+.|+++++
T Consensus 165 ----------~~~l~~L~~L~L~~N-~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N- 224 (317)
T 3o53_A 165 ----------AASSDTLEHLNLQYN-FIYDVKG-------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN- 224 (317)
T ss_dssp ----------GGGTTTCCEEECTTS-CCCEEEC-------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-
T ss_pred ----------hhccCcCCEEECCCC-cCccccc-------ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-
Confidence 125688888888875 3444332 224788888888874 67777777777888888888875
Q ss_pred CcccCCcccccccCCCCCccEEEEecCCCC-CccccccCCCCCCCeEEEeCCccch
Q 018079 283 NMEELPILEDHRTTDIPRLSSLRIGYCPKL-KVLPDCLLRTTTLQKLTIWGCPLLE 337 (361)
Q Consensus 283 ~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l-~~l~~~l~~l~~L~~L~l~~c~~l~ 337 (361)
.++.+|. .+..+++|+.|++++++.. ..++..+..+++|+.+++.+++.++
T Consensus 225 ~l~~l~~----~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 225 KLVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCCEECT----TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cccchhh----HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 5666664 4566788888888886554 3566777778888888877665554
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=5.5e-17 Score=147.25 Aligned_cols=204 Identities=18% Similarity=0.218 Sum_probs=148.9
Q ss_pred cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhc--CCCCCccEEEecccCCCCCchhh
Q 018079 70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEAL--QPPLNVEELWIIFYGGNIFPKWL 147 (361)
Q Consensus 70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~p~~~ 147 (361)
..++++|++|+++.|.... ..+..+ ..+++|++|+++++.....|..+
T Consensus 91 ~~~l~~L~~L~L~~n~l~~------------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 140 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTG------------------------------TAPPPLLEATGPDLNILNLRNVSWATRDAWL 140 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBS------------------------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHH
T ss_pred hcCcCCccEEEccCCcccc------------------------------hhHHHHHHhcCCCccEEEccCCCCcchhHHH
Confidence 3468899999999987531 123333 77899999999999887778777
Q ss_pred hcC-----ccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceee--cccccccCCCCCCCCCCCCCCCcccCCC
Q 018079 148 TSL-----ANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRV--GNEFLGIEESSEDGPSSSSSSPSVIAFP 217 (361)
Q Consensus 148 ~~l-----~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (361)
+.+ ++|++|+++++ .+..++. ++.++ |+.|+++++.-.... +..+. +..++
T Consensus 141 ~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------------~~~l~ 201 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC------------------PLKFP 201 (312)
T ss_dssp HHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC------------------TTSCT
T ss_pred HHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH------------------hccCC
Confidence 766 89999999997 5665553 88899 999999986532221 21211 24789
Q ss_pred CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc--hhccCCCCcceEeeccCCCcccCCccccccc
Q 018079 218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP--DYLLQMTVLQNLRIFFCENMEELPILEDHRT 295 (361)
Q Consensus 218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l 295 (361)
+|++|+++++ .+..++.-. ...+..+++|+.|+++++ .++..+ ..+..+++|+.|+++++ .++.+|. .+
T Consensus 202 ~L~~L~L~~N-~l~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~----~~ 272 (312)
T 1wwl_A 202 TLQVLALRNA-GMETPSGVC--SALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK----GL 272 (312)
T ss_dssp TCCEEECTTS-CCCCHHHHH--HHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS----SC
T ss_pred CCCEEECCCC-cCcchHHHH--HHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhh----hc
Confidence 9999999986 454322100 123347899999999985 565543 34455899999999985 5667774 22
Q ss_pred CCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 296 TDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 296 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
. ++|+.|+++++ .++.+|. +..+++|++|++++++-
T Consensus 273 ~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 273 P--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp C--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred c--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 2 78999999984 7788887 88999999999998864
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=6.6e-16 Score=142.53 Aligned_cols=244 Identities=16% Similarity=0.168 Sum_probs=173.7
Q ss_pred eecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEe
Q 018079 4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF 83 (361)
Q Consensus 4 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 83 (361)
.+.+++ .++.+|.++. .+|++|++ ..+.+..++ ...+.++++|+.|+++.
T Consensus 36 c~~~~~-~l~~iP~~~~--~~L~~L~l-------~~n~i~~~~--------------------~~~~~~l~~L~~L~L~~ 85 (353)
T 2z80_A 36 CKGSSG-SLNSIPSGLT--EAVKSLDL-------SNNRITYIS--------------------NSDLQRCVNLQALVLTS 85 (353)
T ss_dssp EECCST-TCSSCCTTCC--TTCCEEEC-------TTSCCCEEC--------------------TTTTTTCTTCCEEECTT
T ss_pred eeCCCC-Cccccccccc--ccCcEEEC-------CCCcCcccC--------------------HHHhccCCCCCEEECCC
Confidence 455666 7788887665 47888888 555555432 01367788999999988
Q ss_pred cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCCC
Q 018079 84 GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCF 162 (361)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~ 162 (361)
|.... ..+..+..+++|++|+++++....+|.. +..+++|+.|+++++
T Consensus 86 n~l~~------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 134 (353)
T 2z80_A 86 NGINT------------------------------IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN- 134 (353)
T ss_dssp SCCCE------------------------------ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-
T ss_pred CccCc------------------------------cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-
Confidence 76432 1134577889999999999988887765 678999999999997
Q ss_pred CCCCCCC---CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079 163 NCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT 238 (361)
Q Consensus 163 ~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~ 238 (361)
.+..++. +..++ |+.|+++++..+..++... +..+++|++|+++++. +.....
T Consensus 135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------~~~l~~L~~L~l~~n~-l~~~~~--- 191 (353)
T 2z80_A 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-------------------FAGLTFLEELEIDASD-LQSYEP--- 191 (353)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-------------------TTTCCEEEEEEEEETT-CCEECT---
T ss_pred CCcccCchhhhccCCCCcEEECCCCccccccCHHH-------------------ccCCCCCCEEECCCCC-cCccCH---
Confidence 5666665 77889 9999999876667665433 4478999999999853 443321
Q ss_pred cccccccCCCccEEEEecCCCCCccchhcc-CCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCC----C
Q 018079 239 RKENISIMPRLSSLEVSSCNKLKALPDYLL-QMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKL----K 313 (361)
Q Consensus 239 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l----~ 313 (361)
..+..+++|+.|+++++ .++.+|..+. .+++|+.|+++++ .++.++.-..-.....+.++.+++.++..- .
T Consensus 192 --~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 192 --KSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp --TTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred --HHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchh
Confidence 35667899999999986 5777776554 4899999999985 344333100001223567888888875322 2
Q ss_pred ccccccCCCCCCCeEEEeCCcc
Q 018079 314 VLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 314 ~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
.+|..+..+++|+.|++++|.-
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCC
T ss_pred hhHHHHhcccCCCEEECCCCCC
Confidence 3677888999999999999853
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=4.1e-16 Score=159.99 Aligned_cols=170 Identities=15% Similarity=0.028 Sum_probs=89.3
Q ss_pred CceeecCCCCccccc-CccCCCccccceecceeeecCC--CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCC
Q 018079 1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFVVGGGV--DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNL 76 (361)
Q Consensus 1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~--~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L 76 (361)
|++|++++| .+..+ |..++++++|++|++.++.... ....+..++ |+ .+.+.+.. .....+..++++++|
T Consensus 26 l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~-~L~Ls~N~----l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 26 TERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR-ILDLGSSK----IYFLHPDAFQGLFHL 99 (844)
T ss_dssp CCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC-EEECTTCC----CCEECTTSSCSCSSC
T ss_pred cCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC-EEECCCCc----CcccCHhHccCCccc
Confidence 567888887 66665 4568888888888885442211 112233333 33 33333211 111123346777777
Q ss_pred ceEEEEecCCCC--CCcchhhhhhcccccccccccccccchhhHHH--HHhcCCCCCccEEEecccCCCC-CchhhhcC-
Q 018079 77 LRLHLQFGGKDE--DWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL--LEALQPPLNVEELWIIFYGGNI-FPKWLTSL- 150 (361)
Q Consensus 77 ~~L~l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l- 150 (361)
++|+++.|.... +....+...++++.|++..+. .... ...+..+++|++|+++++.... .+..+..+
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-------l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-------IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-------CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCc-------ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 777777766543 222235556666666666543 1111 1345566667777776665433 34444444
Q ss_pred -ccCCeeeecCCCCCCCCCC-CCC----C--c-cceEecccc
Q 018079 151 -ANLRELNLSLCFNCEHLPQ-LGK----L--P-LEKLQLKNL 183 (361)
Q Consensus 151 -~~L~~L~l~~~~~~~~l~~-l~~----l--~-L~~L~l~~~ 183 (361)
++|+.|+++++.-....+. ++. + . |+.|+++++
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 5666777666533222222 111 1 2 677777764
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=1.5e-15 Score=144.81 Aligned_cols=254 Identities=19% Similarity=0.168 Sum_probs=119.0
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKN 75 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~ 75 (361)
|++|++++| .+..+| +++++++|++|++.++ .+..++ ++ .+.+.+.. +... + .++++++
T Consensus 133 L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-------~l~~lp~~~~~L~-~L~L~~n~-l~~l----~-~~~~l~~ 196 (454)
T 1jl5_A 133 LEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-------SLKKLPDLPPSLE-FIAAGNNQ-LEEL----P-ELQNLPF 196 (454)
T ss_dssp CCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-------CCSCCCCCCTTCC-EEECCSSC-CSSC----C-CCTTCTT
T ss_pred CCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-------cCcccCCCccccc-EEECcCCc-CCcC----c-cccCCCC
Confidence 466777777 666677 4777777777777433 222222 22 33332211 1111 1 2667777
Q ss_pred CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCe
Q 018079 76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRE 155 (361)
Q Consensus 76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~ 155 (361)
|+.|++++|.....+. ....++.+++..+. ...++ .+..+++|++|+++++....+|.. +++|+.
T Consensus 197 L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~-------l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~ 261 (454)
T 1jl5_A 197 LTAIYADNNSLKKLPD----LPLSLESIVAGNNI-------LEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEA 261 (454)
T ss_dssp CCEEECCSSCCSSCCC----CCTTCCEEECCSSC-------CSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCE
T ss_pred CCEEECCCCcCCcCCC----CcCcccEEECcCCc-------CCccc-ccCCCCCCCEEECCCCcCCccccc---ccccCE
Confidence 7777777766543211 12355556665543 22222 355566666666666655555542 356666
Q ss_pred eeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhh
Q 018079 156 LNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN 234 (361)
Q Consensus 156 L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 234 (361)
|++++| .+..+|.. .+ |+.|+++++. ++.++. ..++|+.|+++++ .+..++
T Consensus 262 L~l~~N-~l~~l~~~--~~~L~~L~ls~N~-l~~l~~-----------------------~~~~L~~L~l~~N-~l~~i~ 313 (454)
T 1jl5_A 262 LNVRDN-YLTDLPEL--PQSLTFLDVSENI-FSGLSE-----------------------LPPNLYYLNASSN-EIRSLC 313 (454)
T ss_dssp EECCSS-CCSCCCCC--CTTCCEEECCSSC-CSEESC-----------------------CCTTCCEEECCSS-CCSEEC
T ss_pred EECCCC-cccccCcc--cCcCCEEECcCCc-cCcccC-----------------------cCCcCCEEECcCC-cCCccc
Confidence 666664 34444431 24 6666666533 333321 1135555555543 222211
Q ss_pred hhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC-
Q 018079 235 YRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK- 313 (361)
Q Consensus 235 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~- 313 (361)
. ..++|+.|+++++ .++.+|.. +++|+.|+++++ .++.+|. .+++|+.|+++++....
T Consensus 314 ~---------~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~l~~lp~-------~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 314 D---------LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVPE-------LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp C---------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSSCCSSC
T ss_pred C---------CcCcCCEEECCCC-cccccccc---CCcCCEEECCCC-ccccccc-------hhhhccEEECCCCCCCcC
Confidence 1 1135556655553 34444433 355566666553 3444442 14556666665543322
Q ss_pred -ccccccCCC-------------CCCCeEEEeCCc
Q 018079 314 -VLPDCLLRT-------------TTLQKLTIWGCP 334 (361)
Q Consensus 314 -~l~~~l~~l-------------~~L~~L~l~~c~ 334 (361)
.+|.++.++ ++|+.|++++++
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCCCTTCCEEECCC---------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 344444444 556666666554
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=1.4e-15 Score=145.14 Aligned_cols=207 Identities=21% Similarity=0.231 Sum_probs=110.6
Q ss_pred cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhc
Q 018079 70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTS 149 (361)
Q Consensus 70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~ 149 (361)
++++++|++|+++.|.....+. ...+++.+++..+. ...++ .+..+++|++|++++|....+|..
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~-------l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--- 213 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQ-------LEELP-ELQNLPFLTAIYADNNSLKKLPDL--- 213 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC-------CSSCC-CCTTCTTCCEEECCSSCCSSCCCC---
T ss_pred cCCCCCCCEEECCCCcCcccCC----CcccccEEECcCCc-------CCcCc-cccCCCCCCEEECCCCcCCcCCCC---
Confidence 6666777777777665443221 12356666666543 22222 456666777777776665555542
Q ss_pred CccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCc
Q 018079 150 LANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMK 228 (361)
Q Consensus 150 l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 228 (361)
..+|+.|++++| .+..+|.++.++ |+.|+++++. ++.++. .+++|++|+++++
T Consensus 214 ~~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N~-l~~l~~-----------------------~~~~L~~L~l~~N- 267 (454)
T 1jl5_A 214 PLSLESIVAGNN-ILEELPELQNLPFLTTIYADNNL-LKTLPD-----------------------LPPSLEALNVRDN- 267 (454)
T ss_dssp CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCS-----------------------CCTTCCEEECCSS-
T ss_pred cCcccEEECcCC-cCCcccccCCCCCCCEEECCCCc-CCcccc-----------------------cccccCEEECCCC-
Confidence 246677777765 444566666666 7777776532 333332 2244555555443
Q ss_pred cchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc---cCC-cccccccCC-------
Q 018079 229 ELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME---ELP-ILEDHRTTD------- 297 (361)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~---~lp-~L~~L~l~~------- 297 (361)
.+..++. .+++|+.|+++++ .++.++.. .++|+.|+++++ .+. .+| +|+.|++++
T Consensus 268 ~l~~l~~---------~~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N-~l~~i~~~~~~L~~L~Ls~N~l~~lp 333 (454)
T 1jl5_A 268 YLTDLPE---------LPQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSN-EIRSLCDLPPSLEELNVSNNKLIELP 333 (454)
T ss_dssp CCSCCCC---------CCTTCCEEECCSS-CCSEESCC---CTTCCEEECCSS-CCSEECCCCTTCCEEECCSSCCSCCC
T ss_pred cccccCc---------ccCcCCEEECcCC-ccCcccCc---CCcCCEEECcCC-cCCcccCCcCcCCEEECCCCcccccc
Confidence 2222221 2344555555443 23332211 134444444432 111 121 333333332
Q ss_pred --CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 298 --IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 298 --l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
+++|+.|++++| .++.+|. .+++|+.|++++|+-
T Consensus 334 ~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 334 ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCC
Confidence 578999999885 6777887 468899999988754
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=7e-16 Score=147.27 Aligned_cols=207 Identities=16% Similarity=0.112 Sum_probs=127.7
Q ss_pred CccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCCCcchh
Q 018079 16 PIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEE 94 (361)
Q Consensus 16 P~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 94 (361)
|..++++++|++|++.++... ....+..++ ++ .+.+.+.. +... .++++++|++|+++.|..... ++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~-~L~Ls~n~-l~~~------~~~~l~~L~~L~Ls~N~l~~~---~~ 102 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLT-KLICTSNN-ITTL------DLSQNTNLTYLACDSNKLTNL---DV 102 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCC-CCTTGGGCTTCS-EEECCSSC-CSCC------CCTTCTTCSEEECCSSCCSCC---CC
T ss_pred ccChhHcCCCCEEEccCCCcc-cChhhcccCCCC-EEEccCCc-CCeE------ccccCCCCCEEECcCCCCcee---ec
Confidence 345788999999999766544 223344444 44 55544321 1211 278889999999998876553 35
Q ss_pred hhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc
Q 018079 95 EEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP 174 (361)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~ 174 (361)
...++++.|++..+. ...+ .+..+++|++|+++++....++ ++.+++|+.|++++|..++.+ .++.++
T Consensus 103 ~~l~~L~~L~L~~N~-------l~~l--~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~ 170 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-------LTKL--DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQT 170 (457)
T ss_dssp TTCTTCCEEECCSSC-------CSCC--CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCT
T ss_pred CCCCcCCEEECCCCc-------CCee--cCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-ccccCC
Confidence 667778888887764 2222 2667788888888887766654 567788888888887666555 466777
Q ss_pred -cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEE
Q 018079 175 -LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLE 253 (361)
Q Consensus 175 -L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 253 (361)
|+.|+++++ .++.++ +..+++|+.|+++++ .+..+ .+..+++|+.|+
T Consensus 171 ~L~~L~ls~n-~l~~l~----------------------l~~l~~L~~L~l~~N-~l~~~--------~l~~l~~L~~L~ 218 (457)
T 3bz5_A 171 QLTTLDCSFN-KITELD----------------------VSQNKLLNRLNCDTN-NITKL--------DLNQNIQLTFLD 218 (457)
T ss_dssp TCCEEECCSS-CCCCCC----------------------CTTCTTCCEEECCSS-CCSCC--------CCTTCTTCSEEE
T ss_pred cCCEEECCCC-ccceec----------------------cccCCCCCEEECcCC-cCCee--------ccccCCCCCEEE
Confidence 888888864 355443 225566666666553 23222 123456666666
Q ss_pred EecCCCCCccchhccCCCCcceEeeccC
Q 018079 254 VSSCNKLKALPDYLLQMTVLQNLRIFFC 281 (361)
Q Consensus 254 l~~c~~l~~l~~~~~~l~~L~~L~l~~c 281 (361)
++++ .++.+| +..+++|+.|+++++
T Consensus 219 Ls~N-~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 219 CSSN-KLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCSS-CCSCCC--CTTCTTCSEEECCSS
T ss_pred CcCC-cccccC--ccccCCCCEEEeeCC
Confidence 6553 455554 445566666666553
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.2e-15 Score=145.55 Aligned_cols=219 Identities=18% Similarity=0.176 Sum_probs=136.2
Q ss_pred CceeecCCCCcccccC-ccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
+++|++++| .+..++ ..++++++|++|++ ..+.+..+. +..+.++++|+.|
T Consensus 77 l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L-------s~n~i~~~~--------------------~~~~~~l~~L~~L 128 (452)
T 3zyi_A 77 TRYLNLMEN-NIQMIQADTFRHLHHLEVLQL-------GRNSIRQIE--------------------VGAFNGLASLNTL 128 (452)
T ss_dssp CSEEECCSS-CCCEECTTTTTTCTTCCEEEC-------CSSCCCEEC--------------------TTTTTTCTTCCEE
T ss_pred ccEEECcCC-cCceECHHHcCCCCCCCEEEC-------CCCccCCcC--------------------hhhccCcccCCEE
Confidence 589999999 888775 56999999999999 455554432 0136678888888
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeee
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNL 158 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l 158 (361)
+++.|...... ...+..+++|++|++++|....+|. .+..+++|+.|++
T Consensus 129 ~L~~n~l~~~~------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 129 ELFDNWLTVIP------------------------------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp ECCSSCCSBCC------------------------------TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCccC------------------------------hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 88887643311 2235556677777777776655443 3456777777777
Q ss_pred cCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079 159 SLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 235 (361)
Q Consensus 159 ~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~ 235 (361)
++|+.+..++. +..++ |+.|+++++. +..++. +..+++|+.|+++++ .+..+..
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~---------------------~~~l~~L~~L~Ls~N-~l~~~~~ 235 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN---------------------LTPLVGLEELEMSGN-HFPEIRP 235 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC---------------------CTTCTTCCEEECTTS-CCSEECG
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCc-cccccc---------------------ccccccccEEECcCC-cCcccCc
Confidence 77666665554 56666 7777777643 443321 336677777777764 3333322
Q ss_pred hhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079 236 RITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
..+..+++|+.|+++++ .+..+ +..+..+++|+.|+++++ .++.+|. -.+..+++|+.|++.+++
T Consensus 236 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 236 -----GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPH---DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -----GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT---TSSTTCTTCCEEECCSSC
T ss_pred -----ccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccCh---HHhccccCCCEEEccCCC
Confidence 24556777777777664 44444 334555777777777764 4444442 123446666777766543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1e-15 Score=138.30 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=158.5
Q ss_pred CceeecCCCCcccccCcc-CCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
|++|+++++ .+..+|.+ ++++++|++|++ ..+.+..++ .. +..+.++++|+.|
T Consensus 30 l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L-------~~n~l~~~~---~~---------------~~~~~~~~~L~~L 83 (306)
T 2z66_A 30 ATRLELESN-KLQSLPHGVFDKLTQLTKLSL-------SSNGLSFKG---CC---------------SQSDFGTTSLKYL 83 (306)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCSEEEC-------CSSCCCEEE---EE---------------EHHHHSCSCCCEE
T ss_pred CCEEECCCC-ccCccCHhHhhccccCCEEEC-------CCCccCccc---Cc---------------ccccccccccCEE
Confidence 678999999 89999987 799999999999 555554432 00 0123467899999
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc--hhhhcCccCCeee
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP--KWLTSLANLRELN 157 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~ 157 (361)
++++|... .++..+..+++|++|+++++....++ ..+..+++|+.|+
T Consensus 84 ~Ls~n~i~-------------------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 84 DLSFNGVI-------------------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp ECCSCSEE-------------------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred ECCCCccc-------------------------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence 99988632 23345677899999999988766655 3677899999999
Q ss_pred ecCCCCCCCCCC-CCCCc-cceEecccccccee--ecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079 158 LSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKR--VGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW 233 (361)
Q Consensus 158 l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 233 (361)
+++|.-....+. +..++ |+.|+++++. +.. .+.. +..+++|++|+++++ .+...
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~--------------------~~~l~~L~~L~Ls~n-~l~~~ 190 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI--------------------FTELRNLTFLDLSQC-QLEQL 190 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC--------------------CTTCTTCCEEECTTS-CCCEE
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH--------------------HhhCcCCCEEECCCC-CcCCc
Confidence 999743333333 77888 9999999754 332 2222 447899999999985 44444
Q ss_pred hhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCC-CCccEEEEecCCC
Q 018079 234 NYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDI-PRLSSLRIGYCPK 311 (361)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l-~~L~~L~l~~c~~ 311 (361)
.. ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++.--...|. .+..+ ++|+.|++++++.
T Consensus 191 ~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 191 SP-----TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CT-----TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS----SCCCCCTTCCEEECTTCCE
T ss_pred CH-----HHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH----HHHhhhccCCEEEccCCCe
Confidence 22 34567899999999985 5666654 566799999999998743333332 34556 4899999998653
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=144.29 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=123.0
Q ss_pred CceeecCCCCcccccC-ccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
+++|++++| .+..++ ..++++++|++|++ ..+.+..+. +..+.++++|+.|
T Consensus 66 l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L-------s~n~i~~i~--------------------~~~~~~l~~L~~L 117 (440)
T 3zyj_A 66 TRLLNLHEN-QIQIIKVNSFKHLRHLEILQL-------SRNHIRTIE--------------------IGAFNGLANLNTL 117 (440)
T ss_dssp CSEEECCSC-CCCEECTTTTSSCSSCCEEEC-------CSSCCCEEC--------------------GGGGTTCSSCCEE
T ss_pred CcEEEccCC-cCCeeCHHHhhCCCCCCEEEC-------CCCcCCccC--------------------hhhccCCccCCEE
Confidence 578999999 888887 56999999999999 455444432 1236677788888
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeee
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNL 158 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l 158 (361)
+++.|...... ...+..+++|++|+++++....++. .+..+++|+.|++
T Consensus 118 ~L~~n~l~~~~------------------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 118 ELFDNRLTTIP------------------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp ECCSSCCSSCC------------------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCeeC------------------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 88877644321 1234555666666666665544333 3445666666666
Q ss_pred cCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079 159 SLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 235 (361)
Q Consensus 159 ~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~ 235 (361)
++++.+..++. +..++ |+.|+++++ .++.++. +..+++|+.|+++++ .+..+..
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---------------------~~~l~~L~~L~Ls~N-~l~~~~~ 224 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN---------------------LTPLIKLDELDLSGN-HLSAIRP 224 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---------------------CTTCSSCCEEECTTS-CCCEECT
T ss_pred CCCCCcceeCcchhhcccccCeecCCCC-cCccccc---------------------cCCCcccCEEECCCC-ccCccCh
Confidence 66555554443 55556 666666653 2333331 235566666666653 3333321
Q ss_pred hhccccccccCCCccEEEEecCCCCCccc-hhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079 236 RITRKENISIMPRLSSLEVSSCNKLKALP-DYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC 309 (361)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c 309 (361)
..+..+++|+.|++.++ .++.++ ..+..+++|+.|+++++ .++.+|. -.+..+++|+.|+++++
T Consensus 225 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 225 -----GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPH---DLFTPLHHLERIHLHHN 289 (440)
T ss_dssp -----TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCT---TTTSSCTTCCEEECCSS
T ss_pred -----hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccCh---hHhccccCCCEEEcCCC
Confidence 23445566666666553 344432 23444666666666653 3333331 12334555566665543
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=5.4e-16 Score=140.78 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=152.4
Q ss_pred hcCCCCCCceEEEEe-cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC-CCchh
Q 018079 69 QLSNKKNLLRLHLQF-GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKW 146 (361)
Q Consensus 69 ~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~ 146 (361)
.+.++++|+.|+++. +.. ...++..+..+++|++|+++++... .+|..
T Consensus 71 ~l~~l~~L~~L~L~~~n~l------------------------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNL------------------------------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp GGGGCTTCSEEEEEEETTE------------------------------ESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred hHhCCCCCCeeeCCCCCcc------------------------------cccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 467777888888873 542 1233566788899999999999876 48888
Q ss_pred hhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccce-eecccccccCCCCCCCCCCCCCCCcccCCC-CccEE
Q 018079 147 LTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVK-RVGNEFLGIEESSEDGPSSSSSSPSVIAFP-KLKSL 222 (361)
Q Consensus 147 ~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L 222 (361)
+..+++|+.|+++++.-...+|. +..++ |++|+++++. +. .++.. +..++ +|++|
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~--------------------l~~l~~~L~~L 179 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS--------------------YGSFSKLFTSM 179 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG--------------------GGCCCTTCCEE
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH--------------------HhhhhhcCcEE
Confidence 89999999999999744335665 78899 9999999865 44 45544 33666 99999
Q ss_pred EEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCcc
Q 018079 223 EIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLS 302 (361)
Q Consensus 223 ~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~ 302 (361)
+++++.-....+. .+..++ |+.|+++++..-...|..+..+++|+.|+++++.--...| .+..+++|+
T Consensus 180 ~L~~N~l~~~~~~------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~ 247 (313)
T 1ogq_A 180 TISRNRLTGKIPP------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLN 247 (313)
T ss_dssp ECCSSEEEEECCG------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCC
T ss_pred ECcCCeeeccCCh------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCC
Confidence 9998643223332 344565 9999999864333566677889999999999864333344 245689999
Q ss_pred EEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 303 SLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 303 ~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
+|++++|.....+|..+..+++|+.|++++|+-.
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 9999997555578989999999999999999654
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=7.4e-15 Score=134.29 Aligned_cols=240 Identities=13% Similarity=0.150 Sum_probs=143.8
Q ss_pred hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhh
Q 018079 69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLT 148 (361)
Q Consensus 69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~ 148 (361)
.+.++++|++|+++.|...... +.++..+++|++|+++++....+|..+.
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~------------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 122 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIH------------------------------EKAFSPLRKLQKLYISKNHLVEIPPNLP 122 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC------------------------------GGGSTTCTTCCEEECCSSCCCSCCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccC------------------------------HhHhhCcCCCCEEECCCCcCCccCcccc
Confidence 3678888999988887654321 3455666667777777666555555433
Q ss_pred cCccCCeeeecCCCCCCCCCC--CCCCc-cceEecccccccee--ecccccccCCCCCCCCCCCC--CCCcccCCCCccE
Q 018079 149 SLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKR--VGNEFLGIEESSEDGPSSSS--SSPSVIAFPKLKS 221 (361)
Q Consensus 149 ~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~L~~ 221 (361)
++|+.|+++++ .+..++. +..++ |+.|+++++. ++. .....+....+..+.++... .++ ...+++|++
T Consensus 123 --~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~-~~~~~~L~~ 197 (332)
T 2ft3_A 123 --SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIP-KDLPETLNE 197 (332)
T ss_dssp --TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCC-SSSCSSCSC
T ss_pred --ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccC-ccccCCCCE
Confidence 56677777664 4444444 55666 7777766533 221 11111111122222222111 011 112368888
Q ss_pred EEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCC
Q 018079 222 LEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPR 300 (361)
Q Consensus 222 L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~ 300 (361)
|+++++ .+...+. ..+..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.+|. .+..+++
T Consensus 198 L~l~~n-~i~~~~~-----~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~----~l~~l~~ 265 (332)
T 2ft3_A 198 LHLDHN-KIQAIEL-----EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPA----GLPDLKL 265 (332)
T ss_dssp CBCCSS-CCCCCCT-----TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT----TGGGCTT
T ss_pred EECCCC-cCCccCH-----HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecCh----hhhcCcc
Confidence 888874 3443332 34567889999999885 5666654 5677899999999985 5667775 4667899
Q ss_pred ccEEEEecCCCCCccc-cccCC------CCCCCeEEEeCCccchhhccCCCCcccchhccCCceec
Q 018079 301 LSSLRIGYCPKLKVLP-DCLLR------TTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKW 359 (361)
Q Consensus 301 L~~L~l~~c~~l~~l~-~~l~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~~ 359 (361)
|+.|+++++ .++.++ ..+.. .++|+.+++.++|..... .....+..+..+..+.+
T Consensus 266 L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~---~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 266 LQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE---VQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG---SCGGGGTTBCCSTTEEC
T ss_pred CCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccc---cCcccccccchhhhhhc
Confidence 999999984 667766 33332 467899999999854221 12334555555555544
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=3.5e-15 Score=133.38 Aligned_cols=181 Identities=20% Similarity=0.255 Sum_probs=138.9
Q ss_pred HhcCCCCCccEEEecccCCCCC-chhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccC
Q 018079 122 EALQPPLNVEELWIIFYGGNIF-PKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIE 197 (361)
Q Consensus 122 ~~l~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~ 197 (361)
+.+..+++|++|+++++....+ |..+..+++|+.|+++++..+..++. +..++ |++|+++++. +..++...
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---- 124 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGL---- 124 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT----
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhH----
Confidence 4567889999999999877664 66778899999999999865776643 78889 9999999754 55544332
Q ss_pred CCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceE
Q 018079 198 ESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNL 276 (361)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L 276 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. +..+++|++|
T Consensus 125 ---------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 125 ---------------FRGLAALQYLYLQDN-ALQALPD-----DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp ---------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred ---------------hhCCcCCCEEECCCC-cccccCH-----hHhccCCCccEEECCCC-cccccCHHHhcCccccCEE
Confidence 447899999999985 4544433 34567899999999985 67777764 6779999999
Q ss_pred eeccCCCcccC-CcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079 277 RIFFCENMEEL-PILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 277 ~l~~c~~l~~l-p~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~ 335 (361)
+++++. +..+ |. .+.++++|+.|+++++ .++.++ ..+..+++|+.|++++++-
T Consensus 183 ~l~~n~-l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 183 LLHQNR-VAHVHPH----AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECCSSC-CCEECTT----TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ECCCCc-ccccCHh----HccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 999864 3333 33 5667899999999985 666676 5688999999999999874
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=1.4e-14 Score=143.51 Aligned_cols=131 Identities=12% Similarity=-0.064 Sum_probs=86.2
Q ss_pred CceeecCCCCcccccCc-cCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079 1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL 77 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~ 77 (361)
+++|++++| .++.+|+ .|.++++||+|++.++.... ....+..++ |+ .+.+.+-. +. ...+..+.++++|+
T Consensus 54 ~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~-~L~Ls~N~-l~---~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 54 TKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS-TLILTGNP-IQ---SLALGAFSGLSSLQ 127 (635)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC-EEECTTCC-CC---EECGGGGTTCTTCC
T ss_pred CCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC-EEEccCCc-CC---CCCHHHhcCCCCCC
Confidence 578999999 8999985 59999999999995543321 111223333 33 44443311 11 11223578899999
Q ss_pred eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC
Q 018079 78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI 142 (361)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 142 (361)
+|+++.|.........+...++++.|++..+.-. ....+..+..+++|++|+++++....
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~-----~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-----SFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC-----CCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccc-----cCCCchhhccchhhhhhcccCccccc
Confidence 9999988877766667788888899988876410 01124556677888888888776543
No 60
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=2.3e-16 Score=144.43 Aligned_cols=166 Identities=22% Similarity=0.231 Sum_probs=114.5
Q ss_pred HHHHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeecccc
Q 018079 119 QLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEF 193 (361)
Q Consensus 119 ~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~ 193 (361)
.+...+..+++|++|++++|.... .+..++.+++|+.|++++|..+.. ++. +..++ |+.|++++|..++......
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 366677888889999998886543 566677888999999988855552 444 56678 9999998874555421111
Q ss_pred cccCCCCCCCCCCCCCCCcccCCC-CccEEEEcCCc-cchhhhhhhccccccccCCCccEEEEecCCCCC-ccchhccCC
Q 018079 194 LGIEESSEDGPSSSSSSPSVIAFP-KLKSLEIDGMK-ELEEWNYRITRKENISIMPRLSSLEVSSCNKLK-ALPDYLLQM 270 (361)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l 270 (361)
. +..++ +|++|++++|. .+.+... ...+..+++|+.|++++|..++ ..+..+..+
T Consensus 189 ~------------------~~~l~~~L~~L~l~~~~~~~~~~~l----~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 189 A------------------VAHVSETITQLNLSGYRKNLQKSDL----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp H------------------HHHSCTTCCEEECCSCGGGSCHHHH----HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred H------------------HHhcccCCCEEEeCCCcccCCHHHH----HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 0 33788 99999999875 4432222 2244578999999999886454 455567778
Q ss_pred CCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079 271 TVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC 309 (361)
Q Consensus 271 ~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c 309 (361)
++|++|++++|..+..- .+ -.+.++++|+.|++++|
T Consensus 247 ~~L~~L~l~~~~~~~~~-~~--~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPE-TL--LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCTTCCGG-GG--GGGGGCTTCCEEECTTS
T ss_pred CCCCEeeCCCCCCCCHH-HH--HHHhcCCCCCEEeccCc
Confidence 99999999998643221 11 13556889999999988
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=6.6e-15 Score=133.27 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=140.8
Q ss_pred CCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCc
Q 018079 72 NKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLA 151 (361)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~ 151 (361)
++++|++|+++.+.... ..++..+++|++|++++|....++. +..++
T Consensus 39 ~l~~L~~L~l~~~~i~~--------------------------------l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~ 85 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--------------------------------IEGVQYLNNLIGLELKDNQITDLAP-LKNLT 85 (308)
T ss_dssp HHHTCCEEECTTSCCCC--------------------------------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCC
T ss_pred HcCCcCEEEeeCCCccC--------------------------------chhhhccCCCCEEEccCCcCCCChh-HccCC
Confidence 46688889888776433 1245667889999999888777776 77888
Q ss_pred cCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccc
Q 018079 152 NLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKEL 230 (361)
Q Consensus 152 ~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l 230 (361)
+|+.|++++| .+..++.+..++ |+.|+++++. ++.++. +..+++|+.|+++++ .+
T Consensus 86 ~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------------l~~l~~L~~L~l~~n-~l 141 (308)
T 1h6u_A 86 KITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQ-ITDVTP---------------------LAGLSNLQVLYLDLN-QI 141 (308)
T ss_dssp SCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSC-CCCCGG---------------------GTTCTTCCEEECCSS-CC
T ss_pred CCCEEEccCC-cCCCchhhcCCCCCCEEECCCCC-CCCchh---------------------hcCCCCCCEEECCCC-cc
Confidence 9999999886 466777788888 9999998754 554432 447889999999875 34
Q ss_pred hhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079 231 EEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
..++. +..+++|+.|+++++ .++.++. +..+++|+.|+++++ .++.++. +..+++|+.|++++|
T Consensus 142 ~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~L~~N- 205 (308)
T 1h6u_A 142 TNISP-------LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP-----LASLPNLIEVHLKNN- 205 (308)
T ss_dssp CCCGG-------GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECTTS-
T ss_pred CcCcc-------ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh-----hcCCCCCCEEEccCC-
Confidence 43322 457888999999886 6777765 777889999999885 4555553 566788899999885
Q ss_pred CCCccccccCCCCCCCeEEEeCCcc
Q 018079 311 KLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 311 ~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
.++.++. +..+++|+.|++++|+-
T Consensus 206 ~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 206 QISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred ccCcccc-ccCCCCCCEEEccCCee
Confidence 5666664 78888999999888763
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=1.4e-15 Score=138.30 Aligned_cols=228 Identities=11% Similarity=0.038 Sum_probs=149.8
Q ss_pred hHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC
Q 018079 62 VDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN 141 (361)
Q Consensus 62 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 141 (361)
...........+++|++|+++.|.........+...++++.|++..+. ..... .+..+++|++|++++|...
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~-~~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------LYETL-DLESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-------CEEEE-EETTCTTCCEEECCSSEEE
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-------CCcch-hhhhcCCCCEEECcCCccc
Confidence 344445556677788889888887665444455555666666665543 11111 2566677777777766544
Q ss_pred CCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCcc
Q 018079 142 IFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLK 220 (361)
Q Consensus 142 ~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 220 (361)
.++ ..++|+.|+++++ .+..++. ..++ |+.|+++++. ++.++... +..+++|+
T Consensus 94 ~l~----~~~~L~~L~l~~n-~l~~~~~-~~~~~L~~L~l~~N~-l~~~~~~~-------------------~~~l~~L~ 147 (317)
T 3o53_A 94 ELL----VGPSIETLHAANN-NISRVSC-SRGQGKKNIYLANNK-ITMLRDLD-------------------EGCRSRVQ 147 (317)
T ss_dssp EEE----ECTTCCEEECCSS-CCSEEEE-CCCSSCEEEECCSSC-CCSGGGBC-------------------TGGGSSEE
T ss_pred ccc----CCCCcCEEECCCC-ccCCcCc-cccCCCCEEECCCCC-CCCccchh-------------------hhccCCCC
Confidence 443 3467777777765 3443332 3356 7777777643 44443322 34678899
Q ss_pred EEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCC
Q 018079 221 SLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPR 300 (361)
Q Consensus 221 ~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~ 300 (361)
+|+++++ .+..... ......+++|+.|+++++ .++.++... .+++|++|+++++ .++.+|. .+..+++
T Consensus 148 ~L~Ls~N-~l~~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~ 215 (317)
T 3o53_A 148 YLDLKLN-EIDTVNF----AELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN-KLAFMGP----EFQSAAG 215 (317)
T ss_dssp EEECTTS-CCCEEEG----GGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCEEECCSS-CCCEECG----GGGGGTT
T ss_pred EEECCCC-CCCcccH----HHHhhccCcCCEEECCCC-cCccccccc-ccccCCEEECCCC-cCCcchh----hhcccCc
Confidence 9999875 4444332 122236788999999885 576665433 4888999999885 5555553 3566899
Q ss_pred ccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 301 LSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 301 L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
|+.|++++| .++.+|..+..+++|+.|++++++-.
T Consensus 216 L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 216 VTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999985 77889988999999999999998765
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=1e-14 Score=130.44 Aligned_cols=218 Identities=18% Similarity=0.212 Sum_probs=149.4
Q ss_pred ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079 2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL 81 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l 81 (361)
++++.++. .+..+|.++ ..+|++|++ ..+.+..+. ...+.++++|++|++
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l-------~~n~i~~~~--------------------~~~~~~~~~L~~L~l 63 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFL-------HGNRISHVP--------------------AASFRACRNLTILWL 63 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEEC-------TTSCCCEEC--------------------TTTTTTCTTCCEEEC
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEe-------eCCcCCccC--------------------HHHcccCCCCCEEEC
Confidence 35677777 788888755 468888888 555555432 013667888999999
Q ss_pred EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccC-CCCC-chhhhcCccCCeeeec
Q 018079 82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYG-GNIF-PKWLTSLANLRELNLS 159 (361)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-p~~~~~l~~L~~L~l~ 159 (361)
+.|.... ..+..+..+++|++|+++++. ...+ |..+..+++|+.|+++
T Consensus 64 ~~n~l~~------------------------------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 64 HSNVLAR------------------------------IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSSCCCE------------------------------ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCccce------------------------------eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 8876432 113456777888999998886 4444 5667788889999988
Q ss_pred CCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhh
Q 018079 160 LCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYR 236 (361)
Q Consensus 160 ~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~ 236 (361)
++ .+..++. +..++ |+.|+++++. +..++... ++.+++|++|+++++ .++.++.
T Consensus 114 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~~- 170 (285)
T 1ozn_A 114 RC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDT-------------------FRDLGNLTHLFLHGN-RISSVPE- 170 (285)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------------------TTTCTTCCEEECCSS-CCCEECT-
T ss_pred CC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhH-------------------hccCCCccEEECCCC-cccccCH-
Confidence 86 4554433 67788 9999888743 55554432 346788999998875 4554443
Q ss_pred hccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCC
Q 018079 237 ITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPK 311 (361)
Q Consensus 237 ~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~ 311 (361)
..+..+++|+.|+++++ .+..+ |..+..+++|+.|+++++ .++.++. -.+..+++|+.|++++++.
T Consensus 171 ----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 ----RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT---EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCH---HHHTTCTTCCEEECCSSCE
T ss_pred ----HHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCH---HHcccCcccCEEeccCCCc
Confidence 23557888999999886 45554 667777888999999885 4444442 1356678888888888654
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=8.4e-16 Score=147.95 Aligned_cols=169 Identities=13% Similarity=0.029 Sum_probs=103.7
Q ss_pred CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079 127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG 203 (361)
Q Consensus 127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 203 (361)
.++|++|++++|....++.. .+++|+.|++++| .+..+++ ++.++ |+.|+++++. +...+...+
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l--------- 164 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL--------- 164 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGG---------
T ss_pred CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHH---------
Confidence 36777777777766554432 4667777777775 3443332 55667 7777777643 444332221
Q ss_pred CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCC
Q 018079 204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCEN 283 (361)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 283 (361)
...+++|++|+++++ .+..++. ...+++|+.|+++++ .++.+|..+..+++|+.|+++++ .
T Consensus 165 ---------~~~l~~L~~L~Ls~N-~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~ 225 (487)
T 3oja_A 165 ---------AASSDTLEHLNLQYN-FIYDVKG-------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-K 225 (487)
T ss_dssp ---------GGGTTTCCEEECTTS-CCCEEEC-------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-C
T ss_pred ---------hhhCCcccEEecCCC-ccccccc-------cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-c
Confidence 115677777777774 3443322 224777777777774 56667666777777777777773 4
Q ss_pred cccCCcccccccCCCCCccEEEEecCCCC-CccccccCCCCCCCeEEEe
Q 018079 284 MEELPILEDHRTTDIPRLSSLRIGYCPKL-KVLPDCLLRTTTLQKLTIW 331 (361)
Q Consensus 284 l~~lp~L~~L~l~~l~~L~~L~l~~c~~l-~~l~~~l~~l~~L~~L~l~ 331 (361)
+..+|. .+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 226 l~~lp~----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 226 LVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEECT----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred Ccccch----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 555554 3555677777777775443 2455666666666666554
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=4.1e-14 Score=140.04 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=80.5
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCccc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILE 291 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~ 291 (361)
+..+++|+.|+++++.....+. +..+..+++|+.|++++| +++.+ |..+..+++|++|+++++ .++.++.
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~-----~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-- 535 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFL-----PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT-- 535 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEE-----CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCC--
T ss_pred cccchhhhhhhhhhcccccccC-----chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCCh--
Confidence 4566778888887754443322 235667889999999886 56666 456777999999999985 5555542
Q ss_pred ccccCCCCCccEEEEecCCCCCcc-ccccCCC-CCCCeEEEeCCc
Q 018079 292 DHRTTDIPRLSSLRIGYCPKLKVL-PDCLLRT-TTLQKLTIWGCP 334 (361)
Q Consensus 292 ~L~l~~l~~L~~L~l~~c~~l~~l-~~~l~~l-~~L~~L~l~~c~ 334 (361)
..++++++|+.|+++++ +++.+ |..+.++ ++|+.|+++++|
T Consensus 536 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 536 -FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp -GGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred -hHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 24677899999999995 55554 5778887 689999998765
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.8e-16 Score=143.81 Aligned_cols=182 Identities=15% Similarity=0.166 Sum_probs=135.9
Q ss_pred hcCCCCCccEEEecccCCCC--CchhhhcCccCCeeeecCCCCCC-CCCC-CCCCc-cceEecccccccee--ecccccc
Q 018079 123 ALQPPLNVEELWIIFYGGNI--FPKWLTSLANLRELNLSLCFNCE-HLPQ-LGKLP-LEKLQLKNLKSVKR--VGNEFLG 195 (361)
Q Consensus 123 ~l~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~-~l~~-l~~l~-L~~L~l~~~~~l~~--l~~~~~~ 195 (361)
.+..+++|++|++++|.... ++..+..+++|+.|++++|. +. ..+. ++.++ |++|++++|..++. ++..
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~--- 163 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL--- 163 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH---
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH---
Confidence 35677899999999887543 66777789999999999984 43 3333 67789 99999999865553 2221
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCC-CccEEEEecCC-CC--CccchhccCCC
Q 018079 196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMP-RLSSLEVSSCN-KL--KALPDYLLQMT 271 (361)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~-~L~~L~l~~c~-~l--~~l~~~~~~l~ 271 (361)
+..+++|++|++++|..+++... ...+..++ +|+.|++++|. .+ ..++..+..++
T Consensus 164 -----------------~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 164 -----------------LSSCSRLDELNLSWCFDFTEKHV----QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp -----------------HHHCTTCCEEECCCCTTCCHHHH----HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred -----------------HhcCCCCCEEcCCCCCCcChHHH----HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 34789999999999866665322 23456799 99999999974 34 34666777899
Q ss_pred CcceEeeccCCCccc-CCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079 272 VLQNLRIFFCENMEE-LPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC 333 (361)
Q Consensus 272 ~L~~L~l~~c~~l~~-lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c 333 (361)
+|++|++++|..++. .+. .+..+++|+.|++++|..+..-. ..+..+++|+.|++++|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999999875542 222 45668999999999997543322 35778999999999999
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=6.4e-15 Score=128.26 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=117.2
Q ss_pred hcCCCCCccEEEecccC-CCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccC
Q 018079 123 ALQPPLNVEELWIIFYG-GNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIE 197 (361)
Q Consensus 123 ~l~~l~~L~~L~l~~~~-~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~ 197 (361)
.+..+++|++|+++++. ...++. .+..+++|+.|++++|+.+..++. +..++ |+.|+++++. ++.++.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~------ 122 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD------ 122 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC------
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc------
Confidence 45667788888888875 545544 456778888888887556666554 56777 8888887643 444443
Q ss_pred CCCCCCCCCCCCCCcccCCCCcc---EEEEcCCccchhhhhhhccccccccCCCcc-EEEEecCCCCCccchhccCCCCc
Q 018079 198 ESSEDGPSSSSSSPSVIAFPKLK---SLEIDGMKELEEWNYRITRKENISIMPRLS-SLEVSSCNKLKALPDYLLQMTVL 273 (361)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~L~---~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~~~~l~~L 273 (361)
+..+++|+ +|+++++..++.++. ..+..+++|+ .|+++++ .++.+|......++|
T Consensus 123 ---------------~~~l~~L~~L~~L~l~~N~~l~~i~~-----~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 123 ---------------LTKVYSTDIFFILEITDNPYMTSIPV-----NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp ---------------CTTCCBCCSEEEEEEESCTTCCEECT-----TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred ---------------cccccccccccEEECCCCcchhhcCc-----ccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 22455555 888877545555443 3355677888 8888774 566777665555778
Q ss_pred ceEeeccCCCcccCCcccccccCCC-CCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 274 QNLRIFFCENMEELPILEDHRTTDI-PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 274 ~~L~l~~c~~l~~lp~L~~L~l~~l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
+.|++++++.++.+|. -.+.++ ++|+.|++++ +.++.+|.. .+++|+.|++.++..
T Consensus 182 ~~L~L~~n~~l~~i~~---~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDK---DAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEECTTCTTCCEECT---TTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CEEEcCCCCCcccCCH---HHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 8888887655666542 134556 7788888877 466777754 567788888877654
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=1e-15 Score=150.80 Aligned_cols=204 Identities=15% Similarity=0.189 Sum_probs=106.5
Q ss_pred cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeecccccccCCC
Q 018079 124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEES 199 (361)
Q Consensus 124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~ 199 (361)
+..+++|+++.+.++....+|..+..+++|+.|++++|. +.. +.. +..++ |+.|+++++..-..++........+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 334445555555554444456666677788888888775 331 111 45666 7777765321100000000000000
Q ss_pred CCCCCCC----------CCCC-----C-cccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEec---CCCC
Q 018079 200 SEDGPSS----------SSSS-----P-SVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSS---CNKL 260 (361)
Q Consensus 200 ~~~~~~~----------~~~~-----~-~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~---c~~l 260 (361)
..+.+.. .... . ....+++|++|++ +|..+..... ......+++|+.|++.+ |+.+
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~----~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESL----ESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHH----HHHHHHCCSCCEEEEEECSCCSCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHH----HHHHhhCCCCcEEEEeecCCCccc
Confidence 0000000 0000 0 0123566666666 2333433222 11122477888888873 4566
Q ss_pred Cccc------hhccCCCCcceEeeccCCC-cc---------cCCcccccccCC--------------CCCccEEEEecCC
Q 018079 261 KALP------DYLLQMTVLQNLRIFFCEN-ME---------ELPILEDHRTTD--------------IPRLSSLRIGYCP 310 (361)
Q Consensus 261 ~~l~------~~~~~l~~L~~L~l~~c~~-l~---------~lp~L~~L~l~~--------------l~~L~~L~l~~c~ 310 (361)
+..| ..+..+++|+.|+++.|.. +. .+|+|+.|++++ +++|++|++++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 5432 2245588888888876542 21 256677776655 6788899998887
Q ss_pred CCCc--cccccCCCCCCCeEEEeCCc
Q 018079 311 KLKV--LPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 311 ~l~~--l~~~l~~l~~L~~L~l~~c~ 334 (361)
++. ++..+..+++|++|++++|.
T Consensus 500 -l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 500 -FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred -CcHHHHHHHHHhcCccCeeECcCCc
Confidence 443 34445677888999999887
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=4.2e-14 Score=127.97 Aligned_cols=152 Identities=14% Similarity=0.222 Sum_probs=91.8
Q ss_pred cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079 124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED 202 (361)
Q Consensus 124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 202 (361)
+..+++|++|+++++....++ .+..+++|+.|++++| .+..++.+..++ |+.|+++++. +..++.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~----------- 146 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQ-ITNISP----------- 146 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-----------
T ss_pred HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCcCcc-----------
Confidence 566667777777776655554 4566777777777775 455555566677 7777777643 343332
Q ss_pred CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCC
Q 018079 203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE 282 (361)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 282 (361)
+..+++|+.|+++++ .+..++. +..+++|+.|+++++ .++.++. +..+++|++|+++++
T Consensus 147 ----------l~~l~~L~~L~l~~n-~l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N- 205 (308)
T 1h6u_A 147 ----------LAGLTNLQYLSIGNA-QVSDLTP-------LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN- 205 (308)
T ss_dssp ----------GGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-
T ss_pred ----------ccCCCCccEEEccCC-cCCCChh-------hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-
Confidence 336677777777764 3333221 446677777777764 4555553 556777777777764
Q ss_pred CcccCCcccccccCCCCCccEEEEecCCCCCccc
Q 018079 283 NMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP 316 (361)
Q Consensus 283 ~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~ 316 (361)
.+..++ .+..+++|+.|+++++ .++..|
T Consensus 206 ~l~~~~-----~l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 206 QISDVS-----PLANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp CCCBCG-----GGTTCTTCCEEEEEEE-EEECCC
T ss_pred ccCccc-----cccCCCCCCEEEccCC-eeecCC
Confidence 444444 2455677777777764 334443
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=1.9e-15 Score=148.80 Aligned_cols=177 Identities=14% Similarity=0.014 Sum_probs=102.7
Q ss_pred CceeecCCCCccc---ccCccCC------------CccccceecceeeecCC-CCCccccc--c-eeceeEEcCCCCCCC
Q 018079 1 MRSLLNFGTNSLK---YMPIGIS------------KLTSLRRLDKFVVGGGV-DGSNTGRL--Q-LRGECSIEGLCNVSH 61 (361)
Q Consensus 1 L~~L~l~~~~~l~---~lP~~i~------------~L~~L~~L~l~~~~~~~-~~~~l~~L--~-L~~~l~l~~l~~~~~ 61 (361)
|++|++++|..+. .+|..++ .+++|++|++..+.... ....+... . |+ .+.+..+....
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~-~L~L~~~~~~~- 152 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE-TLKLDKCSGFT- 152 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC-EEEEESCEEEE-
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc-EEECcCCCCcC-
Confidence 6789998875432 3454444 67899999997654321 01111111 1 33 55555544221
Q ss_pred hHHHHHhhcCCCCCCceEEEEecCCCCCC----cchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecc
Q 018079 62 VDEAERLQLSNKKNLLRLHLQFGGKDEDW----RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIF 137 (361)
Q Consensus 62 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 137 (361)
.........++++|++|++++|...... .......+.++.|++..+.--. .....+...+..+++|++|++.+
T Consensus 153 -~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 153 -TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK--ISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp -HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSS--CCHHHHHHHHHHCTTCCEEECSS
T ss_pred -HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCc--cCHHHHHHHHhhCCCCcEEeccC
Confidence 2234444567899999999887543221 1123456677777776543110 00234455556678899999998
Q ss_pred cCCCCCchhhhcCccCCeeeecCCCCCC---CC-CCCCCCc-cceEeccc
Q 018079 138 YGGNIFPKWLTSLANLRELNLSLCFNCE---HL-PQLGKLP-LEKLQLKN 182 (361)
Q Consensus 138 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~l-~~l~~l~-L~~L~l~~ 182 (361)
|....+|..+..+++|+.|.++.+.... .. ..+..++ |+.+.+++
T Consensus 230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279 (592)
T ss_dssp CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT
T ss_pred ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc
Confidence 8776677777888888888887542221 11 1244455 66666654
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.6e-14 Score=125.64 Aligned_cols=208 Identities=12% Similarity=0.074 Sum_probs=141.8
Q ss_pred CCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecC-CC
Q 018079 9 TNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGG-KD 87 (361)
Q Consensus 9 ~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~ 87 (361)
|..+..+|. +.. +|++|++ ..+.+..++ ...+.++++|+.|+++.|. ..
T Consensus 20 c~~l~~ip~-~~~--~l~~L~l-------~~n~l~~i~--------------------~~~~~~l~~L~~L~l~~n~~l~ 69 (239)
T 2xwt_C 20 CKDIQRIPS-LPP--STQTLKL-------IETHLRTIP--------------------SHAFSNLPNISRIYVSIDVTLQ 69 (239)
T ss_dssp ECSCSSCCC-CCT--TCCEEEE-------ESCCCSEEC--------------------TTTTTTCTTCCEEEEECCSSCC
T ss_pred ccCccccCC-CCC--cccEEEE-------eCCcceEEC--------------------HHHccCCCCCcEEeCCCCCCcc
Confidence 435777887 543 7888888 444444432 0136678899999999885 32
Q ss_pred CCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecc-cCCCCCc-hhhhcCccCCeeeecCCCCCC
Q 018079 88 EDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIF-YGGNIFP-KWLTSLANLRELNLSLCFNCE 165 (361)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~p-~~~~~l~~L~~L~l~~~~~~~ 165 (361)
. . ....+..+++|++|++.+ +....+| ..+..+++|+.|+++++ .+.
T Consensus 70 ~----------------------------i--~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~ 118 (239)
T 2xwt_C 70 Q----------------------------L--ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLK 118 (239)
T ss_dssp E----------------------------E--CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCC
T ss_pred e----------------------------e--CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCc
Confidence 2 0 023456778899999987 6665555 45567888999999886 566
Q ss_pred CCCCCCCCc-cc---eEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCcc-EEEEcCCccchhhhhhhccc
Q 018079 166 HLPQLGKLP-LE---KLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLK-SLEIDGMKELEEWNYRITRK 240 (361)
Q Consensus 166 ~l~~l~~l~-L~---~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~l~~~~~~~~~~ 240 (361)
.+|.+..++ |+ .|+++++..++.++... +..+++|+ +|+++++ .++.++.
T Consensus 119 ~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~-------------------~~~l~~L~~~L~l~~n-~l~~i~~----- 173 (239)
T 2xwt_C 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA-------------------FQGLCNETLTLKLYNN-GFTSVQG----- 173 (239)
T ss_dssp SCCCCTTCCBCCSEEEEEEESCTTCCEECTTT-------------------TTTTBSSEEEEECCSC-CCCEECT-----
T ss_pred cccccccccccccccEEECCCCcchhhcCccc-------------------ccchhcceeEEEcCCC-CCcccCH-----
Confidence 677777777 77 89998764677776543 33678888 9998874 4554443
Q ss_pred cccccCCCccEEEEecCCCCCccchh-ccCC-CCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079 241 ENISIMPRLSSLEVSSCNKLKALPDY-LLQM-TVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 241 ~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l-~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
..+.. ++|+.|+++++..++.++.. +..+ ++|+.|++++ ..++.+|. ..+++|+.|++.++.
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~------~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPS------KGLEHLKELIARNTW 237 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCC------TTCTTCSEEECTTC-
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCCh------hHhccCceeeccCcc
Confidence 12223 78999999886557777654 5567 8999999988 45666663 247788888887764
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1.6e-15 Score=144.72 Aligned_cols=239 Identities=22% Similarity=0.200 Sum_probs=137.5
Q ss_pred CCCCCceEEEEecCCCCCC----cchhhhhhcccccccccccccccchhhHHHHHhcC-CCCCccEEEecccCCCC----
Q 018079 72 NKKNLLRLHLQFGGKDEDW----RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQ-PPLNVEELWIIFYGGNI---- 142 (361)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~---- 142 (361)
..++|++|++++|...... ...+...++++.|++..+.- .+. ....+...+. ..++|++|++++|....
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEA-GVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC-HHH-HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc-chH-HHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 3556777777766543321 11223335666666665431 000 0112222232 35688899998887654
Q ss_pred -CchhhhcCccCCeeeecCCCCCCCC------CC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcc
Q 018079 143 -FPKWLTSLANLRELNLSLCFNCEHL------PQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSV 213 (361)
Q Consensus 143 -~p~~~~~l~~L~~L~l~~~~~~~~l------~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 213 (361)
++.++..+++|+.|++++| .+... +. ...++ |+.|++++|. ++......... .+
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~---------------~l 280 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCR---------------VL 280 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH---------------HH
T ss_pred HHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHH---------------HH
Confidence 4666677888999998887 34321 11 23567 8899988763 44421111100 03
Q ss_pred cCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCc-----cchhccCCCCcceEeeccCCCcccC
Q 018079 214 IAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKA-----LPDYLLQMTVLQNLRIFFCENMEEL 287 (361)
Q Consensus 214 ~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l 287 (361)
..+++|++|+++++ .+.+... .+. .......++|+.|++++|. ++. ++..+..+++|++|+++++ .+...
T Consensus 281 ~~~~~L~~L~Ls~n-~i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~ 356 (461)
T 1z7x_W 281 RAKESLKELSLAGN-ELGDEGARLLC-ETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDA 356 (461)
T ss_dssp HHCTTCCEEECTTC-CCHHHHHHHHH-HHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHH
T ss_pred hhCCCcceEECCCC-CCchHHHHHHH-HHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccc
Confidence 35788999999875 3433221 000 0111234689999998874 442 4555666889999999886 34321
Q ss_pred C--cccccccC-CCCCccEEEEecCCCCC-----ccccccCCCCCCCeEEEeCCcc
Q 018079 288 P--ILEDHRTT-DIPRLSSLRIGYCPKLK-----VLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 288 p--~L~~L~l~-~l~~L~~L~l~~c~~l~-----~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
. .+.. .+. ..++|++|++++| .++ .+|..+..+++|++|++++|+-
T Consensus 357 ~~~~l~~-~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 357 GVRELCQ-GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHH-HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cHHHHHH-HHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 1 1100 111 1568888888887 444 5777777788889999988853
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3.9e-14 Score=130.50 Aligned_cols=237 Identities=17% Similarity=0.140 Sum_probs=151.9
Q ss_pred ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079 2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL 81 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l 81 (361)
++++.+++ +++++|.++ ..++++|++ ..+.|+.++ ...+.++++|++|++
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~L-------s~N~i~~i~--------------------~~~f~~l~~L~~L~L 61 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRF-------VLTKLRVIQ--------------------KGAFSGFGDLEKIEI 61 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEE-------ESCCCSEEC--------------------TTSSTTCTTCCEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEc-------cCCcCCCcC--------------------HHHHcCCCCCCEEEC
Confidence 34566666 788999877 367899998 555555543 013678889999999
Q ss_pred EecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEE-ecccCCCCC-chhhhcCccCCeeee
Q 018079 82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELW-IIFYGGNIF-PKWLTSLANLRELNL 158 (361)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~-l~~~~~~~~-p~~~~~l~~L~~L~l 158 (361)
+.|.... .+ ..++..+++++++. ..++....+ |..+..+++|+.|++
T Consensus 62 s~N~i~~------------------------------~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 62 SQNDVLE------------------------------VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp ECCTTCC------------------------------EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred cCCCCCC------------------------------ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 9887422 01 12345666666543 444554444 445567788888888
Q ss_pred cCCCCCCCCCCCC--CCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079 159 SLCFNCEHLPQLG--KLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY 235 (361)
Q Consensus 159 ~~~~~~~~l~~l~--~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~ 235 (361)
+++ .+..++... ... +..+++.++..+..++...+.. ....++.|++++ ..++.++.
T Consensus 112 ~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~------------------~~~~l~~L~L~~-N~i~~i~~ 171 (350)
T 4ay9_X 112 SNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG------------------LSFESVILWLNK-NGIQEIHN 171 (350)
T ss_dssp EEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT------------------SBSSCEEEECCS-SCCCEECT
T ss_pred ccc-ccccCCchhhcccchhhhhhhccccccccccccchhh------------------cchhhhhhcccc-ccccCCCh
Confidence 775 555555532 233 6677776666677766543321 123577777776 34555443
Q ss_pred hhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCc
Q 018079 236 RITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKV 314 (361)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~ 314 (361)
.+...++|+.+.+.+++.++.+|..+ ..+++|+.|+++++ .++.+|. ..+.+|++|.+.+++.++.
T Consensus 172 ------~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~------~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 172 ------SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS------YGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp ------TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS------SSCTTCCEEECTTCTTCCC
T ss_pred ------hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh------hhhccchHhhhccCCCcCc
Confidence 23345677888887777777777653 56788888888874 5666653 3366777777777777888
Q ss_pred cccccCCCCCCCeEEEeC
Q 018079 315 LPDCLLRTTTLQKLTIWG 332 (361)
Q Consensus 315 l~~~l~~l~~L~~L~l~~ 332 (361)
+|. +..+++|+.+++.+
T Consensus 239 lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 LPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCC-TTTCCSCCEEECSC
T ss_pred CCC-chhCcChhhCcCCC
Confidence 874 67778888887754
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=2.3e-14 Score=128.53 Aligned_cols=199 Identities=22% Similarity=0.231 Sum_probs=147.3
Q ss_pred cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCC-chhhh
Q 018079 70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLT 148 (361)
Q Consensus 70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~~~ 148 (361)
+.+++++++++++.+.... ++..+ .+++++|+++++....+ +..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-------------------------------ip~~~--~~~l~~L~L~~N~l~~~~~~~~~ 52 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-------------------------------LPPDL--PKDTTILHLSENLLYTFSLATLM 52 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-------------------------------CCSCC--CTTCCEEECTTSCCSEEEGGGGT
T ss_pred ccccCCccEEECCCCCCCc-------------------------------CCCCC--CCCCCEEEcCCCcCCccCHHHhh
Confidence 5677888888887765332 22222 26789999998887664 45677
Q ss_pred cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCC
Q 018079 149 SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGM 227 (361)
Q Consensus 149 ~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 227 (361)
.+++|+.|+++++ .+..++..+.++ |+.|+++++ .++.++.. +..+++|+.|+++++
T Consensus 53 ~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~--------------------~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 53 PYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHN-QLQSLPLL--------------------GQTLPALTVLDVSFN 110 (290)
T ss_dssp TCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSS-CCSSCCCC--------------------TTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCCC-cCCcCchh--------------------hccCCCCCEEECCCC
Confidence 8899999999986 566666667788 999999874 45655542 337889999999874
Q ss_pred ccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEE
Q 018079 228 KELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRI 306 (361)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l 306 (361)
.++.++. ..+..+++|+.|+++++ .++.+|... ..+++|+.|+++++ .++.+|. -.+.++++|+.|++
T Consensus 111 -~l~~l~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~---~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 111 -RLTSLPL-----GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA---GLLNGLENLDTLLL 179 (290)
T ss_dssp -CCCCCCS-----STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT---TTTTTCTTCCEEEC
T ss_pred -cCcccCH-----HHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH---HHhcCcCCCCEEEC
Confidence 5555442 34667899999999885 677777654 56899999999984 5666663 13456889999999
Q ss_pred ecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 307 GYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 307 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
++ +.++.+|.++..+++|+.++++++|.
T Consensus 180 ~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 180 QE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 88 57789998888888999999998764
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=6.6e-14 Score=125.57 Aligned_cols=191 Identities=18% Similarity=0.134 Sum_probs=137.9
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLH 80 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~ 80 (361)
+++++++++ .+..+|.++. .++++|++ ..+.+..+. +..+.++++|+.|+
T Consensus 12 l~~l~~~~~-~l~~ip~~~~--~~l~~L~L-------~~N~l~~~~--------------------~~~~~~l~~L~~L~ 61 (290)
T 1p9a_G 12 HLEVNCDKR-NLTALPPDLP--KDTTILHL-------SENLLYTFS--------------------LATLMPYTRLTQLN 61 (290)
T ss_dssp CCEEECTTS-CCSSCCSCCC--TTCCEEEC-------TTSCCSEEE--------------------GGGGTTCTTCCEEE
T ss_pred ccEEECCCC-CCCcCCCCCC--CCCCEEEc-------CCCcCCccC--------------------HHHhhcCCCCCEEE
Confidence 456777776 7777777664 56777777 444444332 12367788899999
Q ss_pred EEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecC
Q 018079 81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSL 160 (361)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~ 160 (361)
++.|.... + .....+++|++|+++++....+|..+..+++|+.|++++
T Consensus 62 L~~n~l~~-------------------------------~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 62 LDRAELTK-------------------------------L-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp CTTSCCCE-------------------------------E-ECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCccCc-------------------------------c-cCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 88876432 1 112567889999999988878888788889999999998
Q ss_pred CCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079 161 CFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI 237 (361)
Q Consensus 161 ~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~ 237 (361)
+ .+..++. +..++ |+.|+++++ .++.++... +..+++|+.|+++++ .+..++.
T Consensus 110 N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------------------~~~l~~L~~L~L~~N-~l~~l~~-- 165 (290)
T 1p9a_G 110 N-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGL-------------------LTPTPKLEKLSLANN-NLTELPA-- 165 (290)
T ss_dssp S-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT-------------------TTTCTTCCEEECTTS-CCSCCCT--
T ss_pred C-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhh-------------------cccccCCCEEECCCC-cCCccCH--
Confidence 6 5666654 77888 999999874 466665443 336789999999874 5655543
Q ss_pred ccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079 238 TRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC 281 (361)
Q Consensus 238 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 281 (361)
..+..+++|+.|+++++ .++.+|..+..+++|+.+++++.
T Consensus 166 ---~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 166 ---GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred ---HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 34457889999999884 68888888888888999998874
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=9.9e-16 Score=150.86 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEe-----cCCCCCccch------hccCCCCcceEeeccCCCc
Q 018079 216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVS-----SCNKLKALPD------YLLQMTVLQNLRIFFCENM 284 (361)
Q Consensus 216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~l~~------~~~~l~~L~~L~l~~c~~l 284 (361)
+++|++|.+ +|..++.... ......+++|+.|++. +|+.++..|. .+..+++|+.|++++ .+
T Consensus 371 ~~~L~~L~~-~~~~l~~~~~----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l 443 (594)
T 2p1m_B 371 CPKLESVLY-FCRQMTNAAL----ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LL 443 (594)
T ss_dssp CTTCCEEEE-EESCCCHHHH----HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SC
T ss_pred chhHHHHHH-hcCCcCHHHH----HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cc
Confidence 556666643 2334433222 1122357888888888 5666764432 245578888888866 33
Q ss_pred c---------cCCcccccccCC--------------CCCccEEEEecCCCCCcc-c-cccCCCCCCCeEEEeCCccc
Q 018079 285 E---------ELPILEDHRTTD--------------IPRLSSLRIGYCPKLKVL-P-DCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 285 ~---------~lp~L~~L~l~~--------------l~~L~~L~l~~c~~l~~l-~-~~l~~l~~L~~L~l~~c~~l 336 (361)
. .+++|+.|++++ +++|++|++++|+. +.. . ..+..+++|+.|++++|+..
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 2 166777777765 78999999999876 332 2 34566899999999999763
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=1e-14 Score=140.42 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=153.7
Q ss_pred HHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc
Q 018079 65 AERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP 144 (361)
Q Consensus 65 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p 144 (361)
........+++|+.|++++|.........+...++++.|++..+. ..... .+..+++|++|++++|....+|
T Consensus 25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~-~l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------LYETL-DLESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-------CEEEE-ECTTCTTCCEEECCSSEEEEEE
T ss_pred HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-------CCCCc-ccccCCCCCEEEecCCcCCCCC
Confidence 333334455688888888887766555566666677777776654 11111 2667778888888877654444
Q ss_pred hhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEE
Q 018079 145 KWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLE 223 (361)
Q Consensus 145 ~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 223 (361)
. .++|+.|++++| .+..++. ..++ |+.|+++++. +..++... ++.+++|+.|+
T Consensus 97 ~----~~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~-------------------~~~l~~L~~L~ 150 (487)
T 3oja_A 97 V----GPSIETLHAANN-NISRVSC-SRGQGKKNIYLANNK-ITMLRDLD-------------------EGCRSRVQYLD 150 (487)
T ss_dssp E----CTTCCEEECCSS-CCCCEEE-CCCSSCEEEECCSSC-CCSGGGBC-------------------GGGGSSEEEEE
T ss_pred C----CCCcCEEECcCC-cCCCCCc-cccCCCCEEECCCCC-CCCCCchh-------------------hcCCCCCCEEE
Confidence 2 377888888876 4444433 3467 8888888643 44443322 44788999999
Q ss_pred EcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccE
Q 018079 224 IDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSS 303 (361)
Q Consensus 224 L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~ 303 (361)
++++ .+..... ......+++|+.|+++++ .++.++.. ..+++|+.|+++++ .+..+|. .+..+++|+.
T Consensus 151 Ls~N-~l~~~~~----~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~----~~~~l~~L~~ 218 (487)
T 3oja_A 151 LKLN-EIDTVNF----AELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTW 218 (487)
T ss_dssp CTTS-CCCEEEG----GGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSS-CCCEECG----GGGGGTTCSE
T ss_pred CCCC-CCCCcCh----HHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCC-CCCCCCH----hHcCCCCccE
Confidence 9885 4443332 112236889999999885 57666543 35889999999985 5566654 4667899999
Q ss_pred EEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 304 LRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 304 L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
|++++ +.++.+|..+..+++|+.+++++|+..
T Consensus 219 L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 219 ISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EEecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence 99998 467789988999999999999998765
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=8.9e-16 Score=146.54 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=60.4
Q ss_pred CCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCc-----cchhccCCCCcceEeeccCCCccc--
Q 018079 215 AFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKA-----LPDYLLQMTVLQNLRIFFCENMEE-- 286 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~-- 286 (361)
.+++|++|+++++ .+.+... .+. ......+++|+.|++++| .++. ++..+..+++|++|+++++. +..
T Consensus 225 ~~~~L~~L~Ls~n-~l~~~~~~~l~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 300 (461)
T 1z7x_W 225 SKASLRELALGSN-KLGDVGMAELC-PGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG 300 (461)
T ss_dssp HCTTCCEEECCSS-BCHHHHHHHHH-HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred hCCCccEEeccCC-cCChHHHHHHH-HHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHH
Confidence 4566666666664 2332211 000 011123566666666665 3443 44444556666666666542 211
Q ss_pred -----------CCcccccccCC-----------------CCCccEEEEecCCCCCcc-c----cccCC-CCCCCeEEEeC
Q 018079 287 -----------LPILEDHRTTD-----------------IPRLSSLRIGYCPKLKVL-P----DCLLR-TTTLQKLTIWG 332 (361)
Q Consensus 287 -----------lp~L~~L~l~~-----------------l~~L~~L~l~~c~~l~~l-~----~~l~~-l~~L~~L~l~~ 332 (361)
.++|+.|++++ +++|++|++++| .++.. + ..+.. .++|++|++++
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCC
Confidence 13444444443 578888888876 44432 1 22322 57888888888
Q ss_pred Ccc
Q 018079 333 CPL 335 (361)
Q Consensus 333 c~~ 335 (361)
|.-
T Consensus 380 n~i 382 (461)
T 1z7x_W 380 CDV 382 (461)
T ss_dssp SCC
T ss_pred CCC
Confidence 853
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=2.1e-13 Score=120.93 Aligned_cols=174 Identities=21% Similarity=0.294 Sum_probs=132.8
Q ss_pred CCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079 128 LNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG 203 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 203 (361)
+++++|+++++....++. .+..+++|+.|+++++ .+..++. +..++ |++|+++++. +..++...
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---------- 104 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGV---------- 104 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTT----------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhH----------
Confidence 579999999988777664 5678999999999986 5666665 57788 9999998743 56655433
Q ss_pred CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCC
Q 018079 204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCE 282 (361)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 282 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. +..+++|++|+++++
T Consensus 105 ---------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n- 167 (270)
T 2o6q_A 105 ---------FDQLVNLAELRLDRN-QLKSLPP-----RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN- 167 (270)
T ss_dssp ---------TTTCSSCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred ---------cccccCCCEEECCCC-ccCeeCH-----HHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-
Confidence 347899999999884 4554443 34568899999999985 67777765 567999999999985
Q ss_pred CcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079 283 NMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 283 ~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 334 (361)
.++.++. -.+.++++|+.|+++++ .++.+| ..+..+++|+.|+++++|
T Consensus 168 ~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 QLKRVPE---GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcEeCh---hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 4555542 13566889999999986 677777 457889999999998886
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=1.8e-15 Score=149.03 Aligned_cols=306 Identities=16% Similarity=0.117 Sum_probs=153.3
Q ss_pred CceeecCCCCcccc--cCccCCCccccceecceeeecCC-CCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCC
Q 018079 1 MRSLLNFGTNSLKY--MPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSN 72 (361)
Q Consensus 1 L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~ 72 (361)
|++|++++|..+.. ++.-+..+++|++|++..+...+ ....+..+. |+ .+.+..... ..........+.+
T Consensus 132 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~-~L~l~~~~~-~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV-SLNISCLAS-EVSFSALERLVTR 209 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC-EEECTTCCS-CCCHHHHHHHHHH
T ss_pred CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc-EEEecccCC-cCCHHHHHHHHHh
Confidence 57778877744443 44434467778888886544221 111122111 33 444443320 0111223333445
Q ss_pred CCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEE-EecccCCCCCchhhhcCc
Q 018079 73 KKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEEL-WIIFYGGNIFPKWLTSLA 151 (361)
Q Consensus 73 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~p~~~~~l~ 151 (361)
+++|+.|+++.+.........+....+++.+++.....--.......+...+..+++|+.+ .+.+.....++..+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 6777777777652211111122333445555533211100011134455566777777777 333333333555555677
Q ss_pred cCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcC-
Q 018079 152 NLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDG- 226 (361)
Q Consensus 152 ~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~- 226 (361)
+|+.|++++|. +.. +.. +..++ |+.|++++|. ........ ...+++|++|++.+
T Consensus 290 ~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l------------------~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 290 RLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVL------------------ASTCKDLRELRVFPS 348 (594)
T ss_dssp TCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHH------------------HHHCTTCCEEEEECS
T ss_pred CCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHH------------------HHhCCCCCEEEEecC
Confidence 78888877765 432 111 44667 7777777652 21111111 11467777777733
Q ss_pred -------CccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhc-cCCCCcceEeec-----cCCCcc-------
Q 018079 227 -------MKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYL-LQMTVLQNLRIF-----FCENME------- 285 (361)
Q Consensus 227 -------~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~-~~l~~L~~L~l~-----~c~~l~------- 285 (361)
+..+.+... ......+++|+.|.+ +|+.++.. ...+ ..+++|+.|+++ +|..++
T Consensus 349 ~~~g~~~~~~l~~~~l----~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 349 EPFVMEPNVALTEQGL----VSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp CTTCSSCSSCCCHHHH----HHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred cccccccCCCCCHHHH----HHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 333433222 112224677777754 34455432 1122 236777777777 455554
Q ss_pred ------cCCcccccccCC-------------CCCccEEEEecCCCCCc-ccccc-CCCCCCCeEEEeCCcc
Q 018079 286 ------ELPILEDHRTTD-------------IPRLSSLRIGYCPKLKV-LPDCL-LRTTTLQKLTIWGCPL 335 (361)
Q Consensus 286 ------~lp~L~~L~l~~-------------l~~L~~L~l~~c~~l~~-l~~~l-~~l~~L~~L~l~~c~~ 335 (361)
.+++|+.|++++ +++|+.|++++|. ++. ....+ ..+++|+.|++++|+.
T Consensus 424 ~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 245677776654 6677777777764 322 12222 4567777777777764
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.8e-15 Score=141.37 Aligned_cols=260 Identities=15% Similarity=0.094 Sum_probs=164.5
Q ss_pred cccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCCC
Q 018079 11 SLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDW 90 (361)
Q Consensus 11 ~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 90 (361)
.+..++..+..+++|++|++ ..+.+... ....+...+.++++|+.|+++.+......
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L-------~~n~i~~~----------------~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~ 76 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVL-------SGNTIGTE----------------AARWLSENIASKKDLEIAEFSDIFTGRVK 76 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEEC-------TTSEECHH----------------HHHHHHHTTTTCTTCCEEECCSCCTTSCG
T ss_pred HHHHHHHHHhcCCCccEEEC-------CCCCCCHH----------------HHHHHHHHHHhCCCccEEeCcccccCccc
Confidence 34455666667777777777 33322221 11223345778889999999876432100
Q ss_pred cchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-----CchhhhcCccCCeeeecCCCCCC
Q 018079 91 RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-----FPKWLTSLANLRELNLSLCFNCE 165 (361)
Q Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~ 165 (361)
. ... .....+..++..+++|++|++++|.... +|.++..+++|++|++++|. +.
T Consensus 77 ~---~~~-----------------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~ 135 (386)
T 2ca6_A 77 D---EIP-----------------EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LG 135 (386)
T ss_dssp G---GSH-----------------HHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CH
T ss_pred c---chh-----------------HHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CC
Confidence 0 000 0144556677888999999999887655 56677889999999999873 33
Q ss_pred C-----CCC-CCCC---------c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079 166 H-----LPQ-LGKL---------P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE 229 (361)
Q Consensus 166 ~-----l~~-l~~l---------~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 229 (361)
. ++. +..+ + |++|+++++. +.......... .+..+++|++|+++++ .
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~---------------~l~~~~~L~~L~L~~n-~ 198 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK---------------TFQSHRLLHTVKMVQN-G 198 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH---------------HHHHCTTCCEEECCSS-C
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH---------------HHHhCCCcCEEECcCC-C
Confidence 1 111 2233 8 9999998754 33111110000 0447889999999986 3
Q ss_pred chhhhhhhccccccccCCCccEEEEecCCCC-----CccchhccCCCCcceEeeccCCCccc-----CCcccccccCCCC
Q 018079 230 LEEWNYRITRKENISIMPRLSSLEVSSCNKL-----KALPDYLLQMTVLQNLRIFFCENMEE-----LPILEDHRTTDIP 299 (361)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-----~~l~~~~~~l~~L~~L~l~~c~~l~~-----lp~L~~L~l~~l~ 299 (361)
+.......-....+..+++|+.|++++|. + ..+|..+..+++|++|++++|. +.. ++. .+..+.++
T Consensus 199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~~ 274 (386)
T 2ca6_A 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVD--AFSKLENI 274 (386)
T ss_dssp CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHH--HHHTCSSC
T ss_pred CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHH--HHhhccCC
Confidence 44211000001255678999999999864 5 5577778889999999999874 332 121 11224478
Q ss_pred CccEEEEecCCCCCc-----ccccc-CCCCCCCeEEEeCCccc
Q 018079 300 RLSSLRIGYCPKLKV-----LPDCL-LRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 300 ~L~~L~l~~c~~l~~-----l~~~l-~~l~~L~~L~l~~c~~l 336 (361)
+|+.|++++|. ++. +|..+ .++++|+.|++++|+--
T Consensus 275 ~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 275 GLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 99999999864 454 88666 66899999999998643
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=1e-13 Score=123.23 Aligned_cols=179 Identities=21% Similarity=0.204 Sum_probs=120.3
Q ss_pred hcCCCCCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCC
Q 018079 123 ALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE 198 (361)
Q Consensus 123 ~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~ 198 (361)
.+..+++|++|+++++....++. .+..+++|+.|+++++ .+..++. +..++ |+.|+++++. +..++...
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~----- 119 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFP----- 119 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCC-----
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCchh-----
Confidence 56677888888888887666443 5667888888888886 4554442 77788 8888888643 44443321
Q ss_pred CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcc---
Q 018079 199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQ--- 274 (361)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~--- 274 (361)
+..+++|++|+++++ .+..+.. ...+..+++|+.|+++++ .++.++. .+..+++|+
T Consensus 120 --------------~~~l~~L~~L~l~~n-~l~~~~l----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 120 --------------IGHLKTLKELNVAHN-LIQSFKL----PEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp --------------CTTCTTCCEEECCSS-CCCCCCC----CGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCC
T ss_pred --------------cccCCCCCEEECcCC-ccceecC----chhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccc
Confidence 447888999988874 3443221 235567888999998885 5665543 444455555
Q ss_pred -eEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCc
Q 018079 275 -NLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 275 -~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~ 334 (361)
+|+++++ .++.++. ......+|+.|+++++ .++.+|. .+..+++|+.|++++++
T Consensus 180 l~L~ls~n-~l~~~~~----~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 180 LSLDLSLN-PMNFIQP----GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSS-CCCEECT----TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeeecCCC-cccccCc----cccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 7777774 4444442 2222458999999985 5778774 56889999999999543
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.49 E-value=3.4e-13 Score=132.94 Aligned_cols=239 Identities=19% Similarity=0.127 Sum_probs=163.1
Q ss_pred CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLH 80 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~ 80 (361)
|++|++++| .+..+|. .+++|++|++.++....-...+.. |+ .+.+.+.. +..+ -..+++|+.|+
T Consensus 63 L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~--L~-~L~Ls~N~-l~~l-------~~~l~~L~~L~ 127 (622)
T 3g06_A 63 ITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPVLPPG--LL-ELSIFSNP-LTHL-------PALPSGLCKLW 127 (622)
T ss_dssp CSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCCCCTT--CC-EEEECSCC-CCCC-------CCCCTTCCEEE
T ss_pred CcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCCCCCC--CC-EEECcCCc-CCCC-------CCCCCCcCEEE
Confidence 688999999 8889987 578899999954443310111111 33 44443311 1111 11467888999
Q ss_pred EEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecC
Q 018079 81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSL 160 (361)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~ 160 (361)
++.|.....+. ..++++.|++..+. ...++ ..+++|+.|++.+|....+| ..+++|+.|++++
T Consensus 128 L~~N~l~~lp~----~l~~L~~L~Ls~N~-------l~~l~---~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 128 IFGNQLTSLPV----LPPGLQELSVSDNQ-------LASLP---ALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSD 190 (622)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSC-------CSCCC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred CCCCCCCcCCC----CCCCCCEEECcCCc-------CCCcC---CccCCCCEEECCCCCCCCCc---ccCCCCcEEECCC
Confidence 88887654332 23678888887664 22111 23468999999999887787 4578999999998
Q ss_pred CCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhcc
Q 018079 161 CFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITR 239 (361)
Q Consensus 161 ~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~ 239 (361)
| .+..+|. .++ |+.|+++++. ++.++. .+++|++|+++++ .+..++.
T Consensus 191 N-~l~~l~~--~~~~L~~L~L~~N~-l~~l~~-----------------------~~~~L~~L~Ls~N-~L~~lp~---- 238 (622)
T 3g06_A 191 N-QLASLPT--LPSELYKLWAYNNR-LTSLPA-----------------------LPSGLKELIVSGN-RLTSLPV---- 238 (622)
T ss_dssp S-CCSCCCC--CCTTCCEEECCSSC-CSSCCC-----------------------CCTTCCEEECCSS-CCSCCCC----
T ss_pred C-CCCCCCC--ccchhhEEECcCCc-ccccCC-----------------------CCCCCCEEEccCC-ccCcCCC----
Confidence 6 5666664 246 9999998753 554442 4578999999875 5555433
Q ss_pred ccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcccc
Q 018079 240 KENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPD 317 (361)
Q Consensus 240 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~ 317 (361)
.+++|+.|+++++ .++.+|. .+++|+.|++++| .++.+|. .+.++++|+.|++++|+.....|.
T Consensus 239 -----~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~----~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 239 -----LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE----SLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG----GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -----CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH----HHhhccccCEEEecCCCCCCcCHH
Confidence 6788999999885 6778876 5788999999985 6667775 567789999999998765444444
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=4.4e-13 Score=118.83 Aligned_cols=57 Identities=30% Similarity=0.394 Sum_probs=25.7
Q ss_pred CCCCCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079 125 QPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN 182 (361)
Q Consensus 125 ~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~ 182 (361)
..+++|++|+++++....+|. .+..+++|+.|+++++ .+..++. +..++ |+.|++++
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC
Confidence 344555555555554444332 2234455555555543 2333332 34444 55555544
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=2.2e-13 Score=125.46 Aligned_cols=216 Identities=19% Similarity=0.195 Sum_probs=140.7
Q ss_pred CceeecCCCCcccccCcc-CCCccccceecceeeecCCCCCcccc-cceeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079 1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGVDGSNTGR-LQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLR 78 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~l~~-L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~ 78 (361)
+++|++++| .++.+|++ +.++++|++|++. .+.+.+ ++ ...+.+++++++
T Consensus 32 l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls-------~N~i~~~i~--------------------~~~f~~L~~l~~ 83 (350)
T 4ay9_X 32 AIELRFVLT-KLRVIQKGAFSGFGDLEKIEIS-------QNDVLEVIE--------------------ADVFSNLPKLHE 83 (350)
T ss_dssp CSEEEEESC-CCSEECTTSSTTCTTCCEEEEE-------CCTTCCEEC--------------------TTSBCSCTTCCE
T ss_pred CCEEEccCC-cCCCcCHHHHcCCCCCCEEECc-------CCCCCCccC--------------------hhHhhcchhhhh
Confidence 578999999 99999975 8999999999994 333321 11 012456666665
Q ss_pred EEE-EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh-hcCccCCee
Q 018079 79 LHL-QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TSLANLREL 156 (361)
Q Consensus 79 L~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L 156 (361)
+.+ ..|.... -.++.+..+++|++|++.++....+|... ....++..+
T Consensus 84 ~l~~~~N~l~~------------------------------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 84 IRIEKANNLLY------------------------------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp EEEEEETTCCE------------------------------ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred hhcccCCcccc------------------------------cCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 433 3444221 01345667778888888887766655432 244566677
Q ss_pred eecCCCCCCCCCC--CCCCc--cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079 157 NLSLCFNCEHLPQ--LGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232 (361)
Q Consensus 157 ~l~~~~~~~~l~~--l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~ 232 (361)
++.++..+..++. +..++ ++.|++++ +.++.++..++ ...+|+.+.+.++..++.
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f--------------------~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAF--------------------NGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSS--------------------TTEEEEEEECTTCTTCCC
T ss_pred hhccccccccccccchhhcchhhhhhcccc-ccccCCChhhc--------------------cccchhHHhhccCCcccC
Confidence 7777666665554 45554 77788875 45677665543 345778888877667776
Q ss_pred hhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEec
Q 018079 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGY 308 (361)
Q Consensus 233 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~ 308 (361)
++. ..+..+++|+.|+++++ +++.+|.. .+.+|+.|.+.++..++.+|. +.++++|+.+++.+
T Consensus 193 i~~-----~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 193 LPN-----DVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp CCT-----TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred CCH-----HHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 654 34567788888888774 67777753 256777777777777777774 44567777777643
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=8.1e-13 Score=117.24 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=128.5
Q ss_pred CCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCC
Q 018079 126 PPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGP 204 (361)
Q Consensus 126 ~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 204 (361)
.+++|+.|++.++....++ .+..+++|+.|+++++ .+..++.+..++ |++|+++++ .++.++...
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~----------- 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGN-QLQSLPNGV----------- 104 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTS-CCCCCCTTT-----------
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCccChhH-----------
Confidence 3467889999888765554 4678899999999986 466666688888 999999875 356555433
Q ss_pred CCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCC
Q 018079 205 SSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCEN 283 (361)
Q Consensus 205 ~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~ 283 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. +..+++|+.|++++| .
T Consensus 105 --------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~ 168 (272)
T 3rfs_A 105 --------FDKLTNLKELVLVEN-QLQSLPD-----GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-Q 168 (272)
T ss_dssp --------TTTCTTCCEEECTTS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred --------hcCCcCCCEEECCCC-cCCccCH-----HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-C
Confidence 347889999999885 4444433 23567889999999886 67777654 467899999999986 4
Q ss_pred cccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079 284 MEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 284 l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~ 335 (361)
++.++. -.++++++|+.|++++| .++.++ ..+..+++|+.|++++|+.
T Consensus 169 l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 169 LQSLPE---GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCccCH---HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 555442 13466889999999886 455655 5578889999999988753
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.48 E-value=2.6e-14 Score=129.59 Aligned_cols=183 Identities=20% Similarity=0.180 Sum_probs=128.9
Q ss_pred CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc-hhhhc
Q 018079 71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTS 149 (361)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~ 149 (361)
.++++|++|+++.|.....+ .. ...+.. ..+++|++|+++++....++ ..++.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~-~~-----------------------~~~l~~--~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRD-AW-----------------------LAELQQ--WLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSS-SH-----------------------HHHHHT--TCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred hcCCCccEEEccCCCCcchh-HH-----------------------HHHHHH--hhcCCCcEEEeeCCCCccchHHHhcc
Confidence 78999999999998764310 00 111111 12489999999999887755 67789
Q ss_pred CccCCeeeecCCCCCCC--CC-CC--CCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEE
Q 018079 150 LANLRELNLSLCFNCEH--LP-QL--GKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLE 223 (361)
Q Consensus 150 l~~L~~L~l~~~~~~~~--l~-~l--~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 223 (361)
+++|+.|+++++.-.+. ++ .+ +.++ |+.|+++++. ++.++...... +..+++|++|+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~----------------~~~l~~L~~L~ 234 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSAL----------------AAARVQLQGLD 234 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHH----------------HHTTCCCSEEE
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHH----------------HhcCCCCCEEE
Confidence 99999999999753332 22 23 7888 9999999854 55332211100 23679999999
Q ss_pred EcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccE
Q 018079 224 IDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSS 303 (361)
Q Consensus 224 L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~ 303 (361)
++++ .+..... ......+++|+.|+++++ .++.+|..+. ++|++|+++++ .++.+|. +..+++|+.
T Consensus 235 Ls~N-~l~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-----~~~l~~L~~ 300 (312)
T 1wwl_A 235 LSHN-SLRDAAG----APSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-----PDELPQVGN 300 (312)
T ss_dssp CTTS-CCCSSCC----CSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC-----TTTSCEEEE
T ss_pred CCCC-cCCcccc----hhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh-----HhhCCCCCE
Confidence 9985 4444321 123446799999999985 6788888776 89999999984 6777763 567899999
Q ss_pred EEEecCC
Q 018079 304 LRIGYCP 310 (361)
Q Consensus 304 L~l~~c~ 310 (361)
|++++++
T Consensus 301 L~L~~N~ 307 (312)
T 1wwl_A 301 LSLKGNP 307 (312)
T ss_dssp EECTTCT
T ss_pred EeccCCC
Confidence 9999853
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=2e-13 Score=121.35 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=150.3
Q ss_pred eecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEe
Q 018079 4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF 83 (361)
Q Consensus 4 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 83 (361)
.+..+. .+..+|..+. .+|++|++ ..+.+..++ ...+.++++|++|+++.
T Consensus 12 ~~c~~~-~l~~ip~~l~--~~l~~L~l-------s~n~l~~~~--------------------~~~~~~l~~L~~L~l~~ 61 (276)
T 2z62_A 12 YQCMEL-NFYKIPDNLP--FSTKNLDL-------SFNPLRHLG--------------------SYSFFSFPELQVLDLSR 61 (276)
T ss_dssp EECTTS-CCSSCCSSSC--TTCCEEEC-------TTCCCCEEC--------------------TTTTTTCTTCSEEECTT
T ss_pred EEecCC-CccccCCCCC--CCccEEEC-------CCCcccccC--------------------HhHhccccCCcEEECCC
Confidence 344554 6778888765 57999999 555555442 01367788999999998
Q ss_pred cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc-hhhhcCccCCeeeecCCC
Q 018079 84 GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTSLANLRELNLSLCF 162 (361)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 162 (361)
|.... .....+..+++|++|+++++....++ ..+..+++|+.|+++++
T Consensus 62 n~l~~------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n- 110 (276)
T 2z62_A 62 CEIQT------------------------------IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET- 110 (276)
T ss_dssp CCCCE------------------------------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred CcCCc------------------------------cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-
Confidence 86432 01235677899999999998876644 56778999999999987
Q ss_pred CCCCCCC--CCCCc-cceEeccccccceee--cccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079 163 NCEHLPQ--LGKLP-LEKLQLKNLKSVKRV--GNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI 237 (361)
Q Consensus 163 ~~~~l~~--l~~l~-L~~L~l~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~ 237 (361)
.+..++. ++.++ |+.|+++++. +..+ +.. +..+++|++|+++++ .++.++.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~--------------------~~~l~~L~~L~Ls~N-~l~~~~~-- 166 (276)
T 2z62_A 111 NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY--------------------FSNLTNLEHLDLSSN-KIQSIYC-- 166 (276)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG--------------------GGGCTTCCEEECCSS-CCCEECG--
T ss_pred CccccCchhcccCCCCCEEECcCCc-cceecCchh--------------------hccCCCCCEEECCCC-CCCcCCH--
Confidence 4555444 78889 9999999754 4442 222 457899999999985 4444332
Q ss_pred ccccccccCCCcc----EEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079 238 TRKENISIMPRLS----SLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 238 ~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
..+..+++|+ .|+++++ .++.++.......+|++|+++++ .++.+|. -.+.++++|+.|++++++
T Consensus 167 ---~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 167 ---TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPD---GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ---GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCT---TTTTTCCSCCEEECCSSC
T ss_pred ---HHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCH---hHhcccccccEEEccCCc
Confidence 1233344444 8888884 67788777777779999999986 4666663 134668999999999753
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=2.8e-13 Score=120.27 Aligned_cols=163 Identities=20% Similarity=0.193 Sum_probs=93.3
Q ss_pred hcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCC
Q 018079 123 ALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE 198 (361)
Q Consensus 123 ~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~ 198 (361)
.+..+++|++|++++|....++.. +..+++|+.|++++| .+..++. ++.++ |+.|+++++ .++.++...
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~----- 152 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGV----- 152 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-----
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHH-----
Confidence 456667777777777766554433 456777777777775 4444444 56667 777777764 345444332
Q ss_pred CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEe
Q 018079 199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLR 277 (361)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~ 277 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. +..+++|+.|+
T Consensus 153 --------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 153 --------------FDKLTNLTELDLSYN-QLQSLPE-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp --------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred --------------hccCccCCEEECCCC-CcCccCH-----HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEE
Confidence 235677777777764 3443332 23446677777777764 45555443 45577777777
Q ss_pred eccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCC
Q 018079 278 IFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTT 324 (361)
Q Consensus 278 l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 324 (361)
+++++-... +++|+.++++.+.....+|.+++.++.
T Consensus 212 l~~N~~~~~-----------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 212 LHDNPWDCT-----------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSSCBCCC-----------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCCCcccc-----------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 776533322 334444444444333456655554443
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=1.9e-12 Score=116.05 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=109.6
Q ss_pred CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079 127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205 (361)
Q Consensus 127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 205 (361)
+++|++|++.++....++. +..+++|+.|++++| .+..++.+..++ |+.|+++++. ++.++.
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------------- 107 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS-------------- 107 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG--------------
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChh--------------
Confidence 4567777877776655643 567777888888775 455555567777 8888887643 444332
Q ss_pred CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079 206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME 285 (361)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 285 (361)
+..+++|++|+++++ .+..++ .+..+++|+.|+++++ .++.+ ..+..+++|+.|++++| .++
T Consensus 108 -------l~~l~~L~~L~L~~n-~i~~~~-------~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~ 169 (291)
T 1h6t_A 108 -------LKDLKKLKSLSLEHN-GISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QIS 169 (291)
T ss_dssp -------GTTCTTCCEEECTTS-CCCCCG-------GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred -------hccCCCCCEEECCCC-cCCCCh-------hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-ccc
Confidence 346777888887764 344332 2446777888888774 55555 35666777888888775 455
Q ss_pred cCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 286 ELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 286 ~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
.++. +..+++|+.|++++| .++.++. +..+++|+.|++++++
T Consensus 170 ~~~~-----l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 DIVP-----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCGG-----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cchh-----hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 5442 556777788888774 5666664 6777788888877765
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=8.1e-13 Score=111.41 Aligned_cols=149 Identities=15% Similarity=0.249 Sum_probs=77.6
Q ss_pred cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCC
Q 018079 149 SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGM 227 (361)
Q Consensus 149 ~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 227 (361)
.+++|+.|+++++ .+..++.+..++ |++|++++| .++.++. +..+++|++|+++++
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~---------------------l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNI-HATNYNP---------------------ISGLSNLERLRIMGK 98 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESC-CCSCCGG---------------------GTTCTTCCEEEEECT
T ss_pred hcCCccEEeccCC-CccChHHHhcCCCCCEEEccCC-CCCcchh---------------------hhcCCCCCEEEeECC
Confidence 4455555555553 344444444555 555555544 2222211 335556666666553
Q ss_pred ccchhhhhhhccccccccCCCccEEEEecCCCCC-ccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEE
Q 018079 228 KELEEWNYRITRKENISIMPRLSSLEVSSCNKLK-ALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRI 306 (361)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l 306 (361)
.+.... ...+..+++|+.|+++++ .+. ..+..+..+++|++|++++|..++.+| .+.++++|+.|++
T Consensus 99 -~l~~~~-----~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l 166 (197)
T 4ezg_A 99 -DVTSDK-----IPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNI 166 (197)
T ss_dssp -TCBGGG-----SCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEEC
T ss_pred -ccCccc-----ChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEEC
Confidence 222211 123445566666666654 233 244455556666666666655455554 2445666666666
Q ss_pred ecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079 307 GYCPKLKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 307 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
++| .++.++ .+..+++|+.|++++++
T Consensus 167 ~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 167 QFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 664 455555 46667777777777664
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.3e-12 Score=117.05 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=129.9
Q ss_pred CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcC
Q 018079 71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSL 150 (361)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l 150 (361)
.++++|+.|+++++.... . +.+..+++|++|++++|....++. +..+
T Consensus 43 ~~l~~L~~L~l~~~~i~~----------------------------~----~~~~~l~~L~~L~L~~n~l~~~~~-l~~l 89 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS----------------------------V----QGIQYLPNVTKLFLNGNKLTDIKP-LANL 89 (291)
T ss_dssp HHHHTCCEEECTTSCCCC----------------------------C----TTGGGCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred hhcCcccEEEccCCCccc----------------------------C----hhHhcCCCCCEEEccCCccCCCcc-cccC
Confidence 356788899988876543 1 346678899999999998877776 7889
Q ss_pred ccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079 151 ANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE 229 (361)
Q Consensus 151 ~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 229 (361)
++|+.|+++++ .+..++.+..++ |+.|+++++. +..++. +..+++|+.|+++++ .
T Consensus 90 ~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-i~~~~~---------------------l~~l~~L~~L~l~~n-~ 145 (291)
T 1h6t_A 90 KNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG-ISDING---------------------LVHLPQLESLYLGNN-K 145 (291)
T ss_dssp TTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC-CCCCGG---------------------GGGCTTCCEEECCSS-C
T ss_pred CCCCEEECCCC-cCCCChhhccCCCCCEEECCCCc-CCCChh---------------------hcCCCCCCEEEccCC-c
Confidence 99999999996 577777788899 9999999754 555421 457899999999985 4
Q ss_pred chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079 230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC 309 (361)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c 309 (361)
+..+. .+..+++|+.|+++++ .++.++. +..+++|+.|+++++ .++.++ .+..+++|+.|+++++
T Consensus 146 l~~~~-------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~-----~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 146 ITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR-----ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCCCG-------GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG-----GGTTCTTCSEEEEEEE
T ss_pred CCcch-------hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh-----hhccCCCCCEEECcCC
Confidence 44432 3557999999999986 6777765 778999999999985 666665 3567889999999985
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=9.2e-13 Score=119.16 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=117.5
Q ss_pred CCCCCccEEEecccCCCCC-c----hhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEecccccccee--eccccc
Q 018079 125 QPPLNVEELWIIFYGGNIF-P----KWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKR--VGNEFL 194 (361)
Q Consensus 125 ~~l~~L~~L~l~~~~~~~~-p----~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~--l~~~~~ 194 (361)
..+++|++|+++++..... + ..+..+++|+.|++++| .+..++. +..++ |++|+++++.-... ++....
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 6678888888888776542 2 12236788888888886 4454443 67788 88888887642221 221111
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCC---
Q 018079 195 GIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQM--- 270 (361)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l--- 270 (361)
+..+++|++|+++++ .++.++... ...+..+++|++|+++++ .++.+ |..+..+
T Consensus 193 ------------------~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 193 ------------------PHKFPAIQNLALRNT-GMETPTGVC--AALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWS 250 (310)
T ss_dssp ------------------TTSSCCCCSCBCCSS-CCCCHHHHH--HHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCC
T ss_pred ------------------hhcCCCCCEEECCCC-CCCchHHHH--HHHHhcCCCCCEEECCCC-CCCccchhhHHhccCc
Confidence 236788888888875 444332200 012346788999999885 45554 6555554
Q ss_pred CCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079 271 TVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 271 ~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 335 (361)
++|++|+++++ .++.+|. .+ +++|+.|++++| .++.+|. +..+++|+.|++++++-
T Consensus 251 ~~L~~L~Ls~N-~l~~lp~----~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQVPK----GL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSS-CCCSCCS----CC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCC-CCCchhh----hh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 68899999874 5666664 22 378889999874 6677665 67788899999988764
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=5.5e-12 Score=106.24 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=116.3
Q ss_pred CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079 127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205 (361)
Q Consensus 127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 205 (361)
+++|++|+++++....+| .+..+++|+.|++++| .+..++.+..++ |++|+++++. ++......
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~------------ 107 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPN------------ 107 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCC------------
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChh------------
Confidence 467999999999887777 6889999999999998 677777788999 9999999854 44322211
Q ss_pred CCCCCCcccCCCCccEEEEcCCccchh-hhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCc
Q 018079 206 SSSSSPSVIAFPKLKSLEIDGMKELEE-WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENM 284 (361)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 284 (361)
+..+++|++|+++++. +.. .+. .+..+++|+.|++++|..++.++ .+..+++|+.|++++| .+
T Consensus 108 -------l~~l~~L~~L~Ls~n~-i~~~~~~------~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i 171 (197)
T 4ezg_A 108 -------LSGLTSLTLLDISHSA-HDDSILT------KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GV 171 (197)
T ss_dssp -------CTTCTTCCEEECCSSB-CBGGGHH------HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CC
T ss_pred -------hcCCCCCCEEEecCCc-cCcHhHH------HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CC
Confidence 4588999999999864 443 222 45689999999999976588887 6788999999999986 45
Q ss_pred ccCCcccccccCCCCCccEEEEecCC
Q 018079 285 EELPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 285 ~~lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
+.++ .+..+++|+.|++++++
T Consensus 172 ~~~~-----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 172 HDYR-----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCT-----TGGGCSSCCEEEECBC-
T ss_pred cChH-----HhccCCCCCEEEeeCcc
Confidence 5555 45678999999999853
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=1.3e-11 Score=107.98 Aligned_cols=173 Identities=19% Similarity=0.265 Sum_probs=120.0
Q ss_pred CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCC
Q 018079 128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGP 204 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 204 (361)
...+++++.++....+|..+. ++++.|+++++ .+..++. +..++ |++|+++++ .++.++...
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~----------- 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV----------- 78 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT-----------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhH-----------
Confidence 456778888777767776543 57888888886 4554443 67788 888888874 355544332
Q ss_pred CCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCC
Q 018079 205 SSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCEN 283 (361)
Q Consensus 205 ~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~ 283 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. +..+++|++|+++++ .
T Consensus 79 --------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~ 142 (251)
T 3m19_A 79 --------FDDLTELGTLGLANN-QLASLPL-----GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-Q 142 (251)
T ss_dssp --------TTTCTTCCEEECTTS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred --------hccCCcCCEEECCCC-cccccCh-----hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-c
Confidence 346788888888874 4554443 34557888888888874 67777665 466888888888875 5
Q ss_pred cccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079 284 MEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 284 l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~ 335 (361)
++.+|. -.++++++|+.|+++++ .++.++ ..+..+++|+.|++++++-
T Consensus 143 l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 143 LQSIPA---GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCH---HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 555552 13556788888888884 566666 4677888888998888764
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=1.6e-12 Score=127.84 Aligned_cols=148 Identities=22% Similarity=0.273 Sum_probs=113.1
Q ss_pred hcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCC
Q 018079 123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSE 201 (361)
Q Consensus 123 ~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 201 (361)
.+..+++|+.|++++|....++. +..+++|+.|++++| .+..++.+..++ |+.|+++++. +..++.
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~---------- 126 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHNG-ISDING---------- 126 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEECTTSC-CCCCGG----------
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEecCCC-CCCCcc----------
Confidence 46678899999999988777766 778999999999987 667777788888 9999998754 454321
Q ss_pred CCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079 202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC 281 (361)
Q Consensus 202 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 281 (361)
+..+++|+.|+|+++ .+..+. .+..+++|+.|++++| .+..++. +..+++|+.|++++|
T Consensus 127 -----------l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 127 -----------LVHLPQLESLYLGNN-KITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp -----------GGGCTTCSEEECCSS-CCCCCG-------GGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------ccCCCccCEEECCCC-ccCCch-------hhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC
Confidence 457899999999885 344432 3557899999999886 5666655 777899999999986
Q ss_pred CCcccCCcccccccCCCCCccEEEEecCC
Q 018079 282 ENMEELPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 282 ~~l~~lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
.+..+| .+..+++|+.|++++|+
T Consensus 186 -~i~~l~-----~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 186 -HISDLR-----ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -CCCBCG-----GGTTCTTCSEEECCSEE
T ss_pred -CCCCCh-----HHccCCCCCEEEccCCc
Confidence 555555 45667888888888753
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=3.6e-13 Score=125.61 Aligned_cols=261 Identities=18% Similarity=0.174 Sum_probs=159.9
Q ss_pred CceeecCCCCcccc-----cCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079 1 MRSLLNFGTNSLKY-----MPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKN 75 (361)
Q Consensus 1 L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~ 75 (361)
|++|++++| .+.. ++..+.++++|++|++. .+.+..+. . .+......+...+.++++
T Consensus 34 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls-------~~~~~~l~---~-------~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 34 VKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVK---D-------EIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCG---G-------GSHHHHHHHHHHHTTCTT
T ss_pred ccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCc-------ccccCccc---c-------chhHHHHHHHHHHhhCCc
Confidence 689999999 6654 44558889999999994 33333221 0 001112233455788999
Q ss_pred CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-----CchhhhcC
Q 018079 76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-----FPKWLTSL 150 (361)
Q Consensus 76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~p~~~~~l 150 (361)
|++|+++.|..... ....++..+..+++|++|++++|.... ++..+..+
T Consensus 96 L~~L~Ls~n~l~~~--------------------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l 149 (386)
T 2ca6_A 96 LHTVRLSDNAFGPT--------------------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149 (386)
T ss_dssp CCEEECCSCCCCTT--------------------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred ccEEECCCCcCCHH--------------------------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH
Confidence 99999998875430 033456677788899999999887532 23333344
Q ss_pred ---------ccCCeeeecCCCCC-CCCCC----CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccC
Q 018079 151 ---------ANLRELNLSLCFNC-EHLPQ----LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIA 215 (361)
Q Consensus 151 ---------~~L~~L~l~~~~~~-~~l~~----l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (361)
++|+.|++++|.-. ..++. +..++ |++|++++|. +........... .+..
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~--------------~l~~ 214 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLE--------------GLAY 214 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHT--------------TGGG
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHH--------------Hhhc
Confidence 88999999887422 23332 44677 9999998763 332110000000 1457
Q ss_pred CCCccEEEEcCCccch-----hhhhhhccccccccCCCccEEEEecCCCCCc-----cchhc--cCCCCcceEeeccCCC
Q 018079 216 FPKLKSLEIDGMKELE-----EWNYRITRKENISIMPRLSSLEVSSCNKLKA-----LPDYL--LQMTVLQNLRIFFCEN 283 (361)
Q Consensus 216 ~~~L~~L~L~~~~~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~--~~l~~L~~L~l~~c~~ 283 (361)
+++|++|+++++. +. .++ ..+..+++|+.|++++|. ++. ++..+ ..+++|++|++++|.
T Consensus 215 ~~~L~~L~Ls~n~-l~~~g~~~l~------~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~- 285 (386)
T 2ca6_A 215 CQELKVLDLQDNT-FTHLGSSALA------IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE- 285 (386)
T ss_dssp CTTCCEEECCSSC-CHHHHHHHHH------HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-
T ss_pred CCCccEEECcCCC-CCcHHHHHHH------HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-
Confidence 8899999998864 42 222 245678899999998864 543 34555 338899999999863
Q ss_pred ccc-----CCccccccc-CCCCCccEEEEecCCCCCccc--ccc-CCCCCCCeEEEeCC
Q 018079 284 MEE-----LPILEDHRT-TDIPRLSSLRIGYCPKLKVLP--DCL-LRTTTLQKLTIWGC 333 (361)
Q Consensus 284 l~~-----lp~L~~L~l-~~l~~L~~L~l~~c~~l~~l~--~~l-~~l~~L~~L~l~~c 333 (361)
+.. +|. .+ .++++|+.|++++|+.-...+ ..+ ..++.++.+.+...
T Consensus 286 i~~~g~~~l~~----~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 286 IELDAVRTLKT----VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp CBHHHHHHHHH----HHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred CCHHHHHHHHH----HHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 333 443 23 347889999998865433332 111 23345554555443
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=118.04 Aligned_cols=184 Identities=18% Similarity=0.138 Sum_probs=120.1
Q ss_pred CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc-hhhhc
Q 018079 71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTS 149 (361)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~ 149 (361)
.++++|++|+++.|...... .......+..+++|++|++++|....++ ..+..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~--------------------------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGR--------------------------SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTT--------------------------SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCCCCCEEEeecccccchh--------------------------hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 56778889999888753200 0001123447788999999988876644 56668
Q ss_pred CccCCeeeecCCCCCCC--CC---CCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEE
Q 018079 150 LANLRELNLSLCFNCEH--LP---QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLE 223 (361)
Q Consensus 150 l~~L~~L~l~~~~~~~~--l~---~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 223 (361)
+++|+.|++++|.-... ++ .++.++ |++|+++++. ++.++...... ++.+++|++|+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l----------------~~~l~~L~~L~ 230 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL----------------AAAGVQPHSLD 230 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH----------------HHHTCCCSSEE
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH----------------HhcCCCCCEEE
Confidence 88999999998743221 22 146788 9999998754 55444321100 23678999999
Q ss_pred EcCCccchhh-hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCcc
Q 018079 224 IDGMKELEEW-NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLS 302 (361)
Q Consensus 224 L~~~~~l~~~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~ 302 (361)
++++ .+... +.. ......+++|+.|+++++ .++.+|..+. ++|++|+++++ .++.+|. ...+++|+
T Consensus 231 Ls~N-~l~~~~p~~---~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-----~~~l~~L~ 297 (310)
T 4glp_A 231 LSHN-SLRATVNPS---APRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-----PDELPEVD 297 (310)
T ss_dssp CTTS-CCCCCCCSC---CSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC-----TTSCCCCS
T ss_pred CCCC-CCCccchhh---HHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch-----hhhCCCcc
Confidence 9885 34443 220 011222479999999885 6778887664 79999999984 5666653 35578899
Q ss_pred EEEEecCC
Q 018079 303 SLRIGYCP 310 (361)
Q Consensus 303 ~L~l~~c~ 310 (361)
.|++++++
T Consensus 298 ~L~L~~N~ 305 (310)
T 4glp_A 298 NLTLDGNP 305 (310)
T ss_dssp CEECSSTT
T ss_pred EEECcCCC
Confidence 99998853
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=7.5e-12 Score=123.13 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=134.8
Q ss_pred CCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCC
Q 018079 126 PPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGP 204 (361)
Q Consensus 126 ~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 204 (361)
.+++|+.|++.++....++ .+..+++|+.|++++| .+..++.+..++ |+.|+++++. +..++.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------------- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLSS------------- 104 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCTT-------------
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCChh-------------
Confidence 3577889999998877776 4788999999999997 567777788899 9999999854 555431
Q ss_pred CCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCc
Q 018079 205 SSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENM 284 (361)
Q Consensus 205 ~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 284 (361)
+..+++|+.|+++++ .+..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++| .+
T Consensus 105 --------l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l 165 (605)
T 1m9s_A 105 --------LKDLKKLKSLSLEHN-GISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QI 165 (605)
T ss_dssp --------STTCTTCCEEECTTS-CCCCCG-------GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CC
T ss_pred --------hccCCCCCEEEecCC-CCCCCc-------cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cC
Confidence 558999999999986 344432 3567999999999986 67777 56788999999999986 45
Q ss_pred ccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 285 EELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 285 ~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
..++. +..+++|+.|++++| .++.++ .+..+++|+.|++++|+-.
T Consensus 166 ~~~~~-----l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 166 SDIVP-----LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCGG-----GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred CCchh-----hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcCc
Confidence 55542 677899999999996 677776 4889999999999998643
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=1.2e-12 Score=121.15 Aligned_cols=259 Identities=15% Similarity=0.101 Sum_probs=150.6
Q ss_pred eeecCCCCcccc-cCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCC-CCceEE
Q 018079 3 SLLNFGTNSLKY-MPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKK-NLLRLH 80 (361)
Q Consensus 3 ~L~l~~~~~l~~-lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~-~L~~L~ 80 (361)
++.++.+ .+.. +|..+....+|++|++ ..+.+.... .......+.+++ +|++|+
T Consensus 2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~L-------s~n~l~~~~----------------~~~l~~~l~~~~~~L~~L~ 57 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDL-------SLNNLYSIS----------------TVELIQAFANTPASVTSLN 57 (362)
T ss_dssp EEECCCC-TTCCHHHHHHTSCTTCCEEEC-------TTSCGGGSC----------------HHHHHHHHHTCCTTCCEEE
T ss_pred ccccccc-cchHHHHHHHhCCCCceEEEc-------cCCCCChHH----------------HHHHHHHHHhCCCceeEEE
Confidence 4567777 5554 4454556666999999 455554432 112233466777 899999
Q ss_pred EEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCC-CCccEEEecccCCCCCc-hh----hhcC-ccC
Q 018079 81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPP-LNVEELWIIFYGGNIFP-KW----LTSL-ANL 153 (361)
Q Consensus 81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~p-~~----~~~l-~~L 153 (361)
+++|...... ...+...+... ++|++|++++|.....+ .. +..+ ++|
T Consensus 58 Ls~N~l~~~~--------------------------~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 111 (362)
T 3goz_A 58 LSGNSLGFKN--------------------------SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111 (362)
T ss_dssp CCSSCGGGSC--------------------------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCCCCCHHH--------------------------HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCc
Confidence 9888643210 22333444444 78888888888755432 22 3344 788
Q ss_pred CeeeecCCCCCCCCCC------CCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCC-CccEEEE
Q 018079 154 RELNLSLCFNCEHLPQ------LGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP-KLKSLEI 224 (361)
Q Consensus 154 ~~L~l~~~~~~~~l~~------l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L 224 (361)
+.|++++| .+...+. +..+ + |++|+++++. +........... +..++ +|++|++
T Consensus 112 ~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~---------------l~~~~~~L~~L~L 174 (362)
T 3goz_A 112 TVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI---------------LAAIPANVNSLNL 174 (362)
T ss_dssp CEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH---------------HHTSCTTCCEEEC
T ss_pred cEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH---------------HhcCCccccEeee
Confidence 88888886 3444432 3343 4 8888888753 443221111100 22444 8888888
Q ss_pred cCCccchhhhh-hhccccccccC-CCccEEEEecCCCCCc-----cchhccC-CCCcceEeeccCCCcccCCc--ccccc
Q 018079 225 DGMKELEEWNY-RITRKENISIM-PRLSSLEVSSCNKLKA-----LPDYLLQ-MTVLQNLRIFFCENMEELPI--LEDHR 294 (361)
Q Consensus 225 ~~~~~l~~~~~-~~~~~~~~~~l-~~L~~L~l~~c~~l~~-----l~~~~~~-l~~L~~L~l~~c~~l~~lp~--L~~L~ 294 (361)
+++. +..... .+ ...+..+ ++|+.|+++++ .+.. ++..+.. .++|++|+++++ .++..+. +. ..
T Consensus 175 s~n~-l~~~~~~~l--~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~-~~ 248 (362)
T 3goz_A 175 RGNN-LASKNCAEL--AKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLK-LL 248 (362)
T ss_dssp TTSC-GGGSCHHHH--HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHH-HT
T ss_pred cCCC-CchhhHHHH--HHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHH-HH
Confidence 8863 332221 00 1123345 48888888885 4554 4555554 458888888885 4443321 11 12
Q ss_pred cCCCCCccEEEEecCC--C-----CCccccccCCCCCCCeEEEeCCc
Q 018079 295 TTDIPRLSSLRIGYCP--K-----LKVLPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 295 l~~l~~L~~L~l~~c~--~-----l~~l~~~l~~l~~L~~L~l~~c~ 334 (361)
+..+++|++|++++|. . +..++..+..+++|+.|++++++
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3457788888888864 1 23344567778888888888875
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.28 E-value=1.7e-11 Score=107.33 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=31.3
Q ss_pred cCCCCCccEEEecccCCCCCc-hhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079 124 LQPPLNVEELWIIFYGGNIFP-KWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN 182 (361)
Q Consensus 124 l~~l~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~ 182 (361)
+..+++|++|+++++....+| ..+..+++|+.|+++++ .+..++. +..++ |+.|++++
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC
Confidence 445566666666666554443 23345566666666654 4444443 34455 55665554
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=3.5e-11 Score=117.26 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=107.8
Q ss_pred CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCC
Q 018079 128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205 (361)
Q Consensus 128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 205 (361)
++|++|++++|....+| ..+++|+.|++++| .+..+|. ++ |+.|+++++ .++.++.
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~---l~~~L~~L~Ls~N-~l~~lp~-------------- 137 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE---LPASLKHLDVDNN-QLTMLPE-------------- 137 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--------------
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch---hhcCCCEEECCCC-cCCCCCC--------------
Confidence 56888888887776677 45678888888876 5555665 33 888888764 3444432
Q ss_pred CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079 206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME 285 (361)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 285 (361)
.+++|+.|+++++ .++.++. .+++|+.|+++++ .++.+|. +. ++|+.|+++++ .++
T Consensus 138 ---------~l~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 138 ---------LPALLEYINADNN-QLTMLPE---------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LLE 193 (571)
T ss_dssp ---------CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCS
T ss_pred ---------cCccccEEeCCCC-ccCcCCC---------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CCC
Confidence 4678888888874 4544332 5678888888875 5777776 44 78888888874 666
Q ss_pred cCCccccccc-CCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079 286 ELPILEDHRT-TDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336 (361)
Q Consensus 286 ~lp~L~~L~l-~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 336 (361)
.+|.+.. .+ ...+.|+.|++++ +.++.+|..+..+++|+.|++++|+--
T Consensus 194 ~lp~~~~-~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 194 SLPAVPV-RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SCCCCC---------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred chhhHHH-hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 7664111 00 0012238888887 477788877777888888888888643
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=3.5e-11 Score=106.12 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=95.1
Q ss_pred CCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079 125 QPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG 203 (361)
Q Consensus 125 ~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 203 (361)
..+++|++|+++++....++ .+..+++|+.|++++| .+..++.+..++ |+.|+++++. ++.++.
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N~-l~~l~~------------ 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRNR-LKNLNG------------ 102 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CSCCTT------------
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCCc-cCCcCc------------
Confidence 34567888888877766666 5667788888888775 566666677777 8888887643 444432
Q ss_pred CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCC
Q 018079 204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCEN 283 (361)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 283 (361)
+.. ++|+.|+++++ .+..++ .+..+++|+.|+++++ .++.++ .+..+++|+.|+++++ .
T Consensus 103 ---------~~~-~~L~~L~L~~N-~l~~~~-------~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~ 161 (263)
T 1xeu_A 103 ---------IPS-ACLSRLFLDNN-ELRDTD-------SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-E 161 (263)
T ss_dssp ---------CCC-SSCCEEECCSS-CCSBSG-------GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-C
T ss_pred ---------ccc-CcccEEEccCC-ccCCCh-------hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-c
Confidence 113 77888888774 344332 2456778888888774 566665 5666778888888774 4
Q ss_pred cccCCcccccccCCCCCccEEEEecC
Q 018079 284 MEELPILEDHRTTDIPRLSSLRIGYC 309 (361)
Q Consensus 284 l~~lp~L~~L~l~~l~~L~~L~l~~c 309 (361)
++.++ .+..+++|+.|+++++
T Consensus 162 i~~~~-----~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 162 ITNTG-----GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCBCT-----TSTTCCCCCEEEEEEE
T ss_pred CcchH-----HhccCCCCCEEeCCCC
Confidence 44442 3455777777777774
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.16 E-value=1.6e-10 Score=112.61 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=24.9
Q ss_pred CccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccc
Q 018079 129 NVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKN 182 (361)
Q Consensus 129 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~ 182 (361)
+|++|++++|....+|. .+++|+.|++++| .+..+|. .++ |+.|++++
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRN 169 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCC
Confidence 55555555555544544 3555555555554 3444443 334 55555554
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.11 E-value=8.3e-10 Score=95.15 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=91.2
Q ss_pred ccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079 130 VEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS 206 (361)
Q Consensus 130 L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 206 (361)
-+.++.++.....+|..+ .++|+.|+++++ .+..+++ +..++ |+.|+++++. ++.++...
T Consensus 21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~------------- 83 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV------------- 83 (229)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------------
T ss_pred CCEeEccCCCcCccCCCC--CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhh-------------
Confidence 456666666655666543 367888888875 4444433 66777 8888887643 55554432
Q ss_pred CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCccc
Q 018079 207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEE 286 (361)
Q Consensus 207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 286 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.
T Consensus 84 ------~~~l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~ 149 (229)
T 3e6j_A 84 ------FDSLTQLTVLDLGTN-QLTVLPS-----AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKS 149 (229)
T ss_dssp ------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCC
T ss_pred ------cccCCCcCEEECCCC-cCCccCh-----hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCc
Confidence 336777788877764 4544432 23456777778877763 56677777777777777777763 4544
Q ss_pred CCcccccccCCCCCccEEEEecCC
Q 018079 287 LPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 287 lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
+|. -.+..+++|+.|++.+++
T Consensus 150 ~~~---~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 150 IPH---GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCT---TTTTTCTTCCEEECTTSC
T ss_pred cCH---HHHhCCCCCCEEEeeCCC
Confidence 442 134456677777776643
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=2.9e-10 Score=100.19 Aligned_cols=145 Identities=15% Similarity=0.176 Sum_probs=112.1
Q ss_pred cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhc
Q 018079 70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTS 149 (361)
Q Consensus 70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~ 149 (361)
+.++++|+.|+++.+.... . ..+..+++|++|++++|....++. +..
T Consensus 37 ~~~l~~L~~L~l~~n~i~~----------------------------l----~~l~~l~~L~~L~L~~N~i~~~~~-l~~ 83 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS----------------------------L----AGMQFFTNLKELHLSHNQISDLSP-LKD 83 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC----------------------------C----TTGGGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred hhhcCcCcEEECcCCCccc----------------------------c----hHHhhCCCCCEEECCCCccCCChh-hcc
Confidence 4456789999998876543 1 256678899999999998877777 788
Q ss_pred CccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCc
Q 018079 150 LANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMK 228 (361)
Q Consensus 150 l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 228 (361)
+++|+.|++++| .+..++.+.. + |+.|+++++ .++.++. +..+++|+.|+++++
T Consensus 84 l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~N-~l~~~~~---------------------l~~l~~L~~L~Ls~N- 138 (263)
T 1xeu_A 84 LTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDNN-ELRDTDS---------------------LIHLKNLEILSIRNN- 138 (263)
T ss_dssp CSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCSS-CCSBSGG---------------------GTTCTTCCEEECTTS-
T ss_pred CCCCCEEECCCC-ccCCcCcccc-CcccEEEccCC-ccCCChh---------------------hcCcccccEEECCCC-
Confidence 999999999996 6777777555 8 999999975 3555431 458899999999985
Q ss_pred cchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079 229 ELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC 281 (361)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 281 (361)
.++.++ .+..+++|+.|+++++ .++.+ ..+..+++|+.|+++++
T Consensus 139 ~i~~~~-------~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 139 KLKSIV-------MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCCBCG-------GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred cCCCCh-------HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence 455443 3557899999999985 67666 56777999999999885
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.08 E-value=5.2e-11 Score=110.01 Aligned_cols=216 Identities=16% Similarity=0.072 Sum_probs=139.8
Q ss_pred HHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCC-CccEEEecccCCCCC-
Q 018079 66 ERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPL-NVEELWIIFYGGNIF- 143 (361)
Q Consensus 66 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~- 143 (361)
.+..+...++|++|++++|...... ...+.+.+..++ +|++|++++|.....
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~--------------------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 67 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSIS--------------------------TVELIQAFANTPASVTSLNLSGNSLGFKN 67 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSC--------------------------HHHHHHHHHTCCTTCCEEECCSSCGGGSC
T ss_pred HHHHHhCCCCceEEEccCCCCChHH--------------------------HHHHHHHHHhCCCceeEEECcCCCCCHHH
Confidence 3444566667999999988743210 344557777788 899999999876553
Q ss_pred chhhhcC-----ccCCeeeecCCCCCCCCCC------CCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCC
Q 018079 144 PKWLTSL-----ANLRELNLSLCFNCEHLPQ------LGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSS 210 (361)
Q Consensus 144 p~~~~~l-----~~L~~L~l~~~~~~~~l~~------l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 210 (361)
+..+..+ ++|+.|++++|. +...+. +..+ + |+.|+++++. ++..+.......
T Consensus 68 ~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~------------- 132 (362)
T 3goz_A 68 SDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQA------------- 132 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHH-------------
T ss_pred HHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHH-------------
Confidence 4444443 899999999984 543332 4445 6 9999999865 555544322111
Q ss_pred CcccCC-CCccEEEEcCCccchhhhh-hhccccccccCC-CccEEEEecCCCCCccch-----hccCC-CCcceEeeccC
Q 018079 211 PSVIAF-PKLKSLEIDGMKELEEWNY-RITRKENISIMP-RLSSLEVSSCNKLKALPD-----YLLQM-TVLQNLRIFFC 281 (361)
Q Consensus 211 ~~l~~~-~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~-----~~~~l-~~L~~L~l~~c 281 (361)
+..+ ++|++|+++++ .+.+... .+ ...+..++ +|++|++++| .++.... .+..+ ++|++|++++|
T Consensus 133 --l~~~~~~L~~L~Ls~N-~l~~~~~~~l--~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 133 --FSNLPASITSLNLRGN-DLGIKSSDEL--IQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp --HTTSCTTCCEEECTTS-CGGGSCHHHH--HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred --HHhCCCceeEEEccCC-cCCHHHHHHH--HHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 2233 59999999986 3432111 00 11233455 9999999997 4554332 33445 59999999986
Q ss_pred CCccc-----CCcccccccCC-CCCccEEEEecCCCCCcc-----ccccCCCCCCCeEEEeCCc
Q 018079 282 ENMEE-----LPILEDHRTTD-IPRLSSLRIGYCPKLKVL-----PDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 282 ~~l~~-----lp~L~~L~l~~-l~~L~~L~l~~c~~l~~l-----~~~l~~l~~L~~L~l~~c~ 334 (361)
. ++. ++. .+.. .++|++|++++| .++.. ...+..+++|+.|++++|.
T Consensus 207 ~-i~~~~~~~l~~----~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 207 L-LGLKSYAELAY----IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp C-GGGSCHHHHHH----HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred C-CChhHHHHHHH----HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3 443 221 1222 458999999986 55543 3445788999999999986
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=1.3e-12 Score=127.66 Aligned_cols=102 Identities=22% Similarity=0.313 Sum_probs=74.4
Q ss_pred CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCC
Q 018079 218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTD 297 (361)
Q Consensus 218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~ 297 (361)
.|+.|+++++ .++.++ .+..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.+| .+++
T Consensus 442 ~L~~L~Ls~n-~l~~lp-------~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-----~l~~ 506 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLC-------HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-----GVAN 506 (567)
T ss_dssp TCSEEECTTS-CCSSCC-------CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-----GGTT
T ss_pred CceEEEecCC-CCCCCc-------CccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-----ccCC
Confidence 5777888774 454432 1556788888888874 67788888888888888888874 555666 4667
Q ss_pred CCCccEEEEecCCCCCcc--ccccCCCCCCCeEEEeCCcc
Q 018079 298 IPRLSSLRIGYCPKLKVL--PDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 298 l~~L~~L~l~~c~~l~~l--~~~l~~l~~L~~L~l~~c~~ 335 (361)
+++|+.|++++| .++.+ |..+..+++|+.|++++|+-
T Consensus 507 l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 507 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 788888888874 56666 77788888888888888764
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=5.8e-10 Score=102.92 Aligned_cols=174 Identities=21% Similarity=0.217 Sum_probs=120.0
Q ss_pred ccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CC-CCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079 130 VEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LG-KLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205 (361)
Q Consensus 130 L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~-~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 205 (361)
-+.++++++....+|..+ ...++.|+++++ .+..++. +. .++ |+.|+++++ .+..++...
T Consensus 20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~------------ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA------------ 83 (361)
T ss_dssp TTEEECCSSCCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTT------------
T ss_pred CCEEEeCCCCcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhh------------
Confidence 357777777766677643 345888999886 5665554 44 788 999999874 466666443
Q ss_pred CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCc
Q 018079 206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENM 284 (361)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l 284 (361)
+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .+..+ +..+..+++|+.|+++++ .+
T Consensus 84 -------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l 148 (361)
T 2xot_A 84 -------FVPVPNLRYLDLSSN-HLHTLDE-----FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QI 148 (361)
T ss_dssp -------TTTCTTCCEEECCSS-CCCEECT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred -------ccCCCCCCEEECCCC-cCCcCCH-----HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cC
Confidence 347889999999884 4555443 34567889999999885 56665 456677899999999884 66
Q ss_pred ccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCC--CCeEEEeCCcc
Q 018079 285 EELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTT--LQKLTIWGCPL 335 (361)
Q Consensus 285 ~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~--L~~L~l~~c~~ 335 (361)
+.+|.--.-.+..+++|+.|++++ +.++.+| ..+..++. ++.|++.++|.
T Consensus 149 ~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 149 SRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 666631100114588999999998 4777777 55666776 47889988763
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=5.2e-10 Score=94.77 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=107.3
Q ss_pred CCCccEEEecccCCCCCchh-hhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079 127 PLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED 202 (361)
Q Consensus 127 l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 202 (361)
.+++++|+++++....++.. +..+++|+.|+++++ .+..++. +..++ |++|+++++ .++.++...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~--------- 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGV--------- 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhH---------
Confidence 35788899888877665543 567888999998886 5666655 57788 888988874 355555432
Q ss_pred CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccC
Q 018079 203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFC 281 (361)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 281 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. +..+++|+.|+++++
T Consensus 96 ----------~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 96 ----------FDKLTQLKELALNTN-QLQSLPD-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ----------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ----------hcCccCCCEEEcCCC-cCcccCH-----hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 346788888888874 4554433 23557888888988885 56666654 566888888888886
Q ss_pred CCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCC
Q 018079 282 ENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTT 324 (361)
Q Consensus 282 ~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 324 (361)
+-... +++|+.|+++.+.....+|..++.++.
T Consensus 159 ~~~~~-----------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWDCT-----------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBCCC-----------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CeecC-----------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 43333 445555556555445567766665543
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=3.1e-10 Score=96.18 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=31.9
Q ss_pred cCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079 124 LQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN 182 (361)
Q Consensus 124 l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~ 182 (361)
+..+++|++|+++++....+|.. +..+++|+.|+++++ .+..++. +..++ |+.|++++
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC
Confidence 34556666666666655444433 345666666666654 3444443 45555 66666655
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.04 E-value=8.8e-10 Score=90.05 Aligned_cols=130 Identities=24% Similarity=0.297 Sum_probs=89.9
Q ss_pred CCCCCccEEEecccCCC--CCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCC
Q 018079 125 QPPLNVEELWIIFYGGN--IFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSE 201 (361)
Q Consensus 125 ~~l~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 201 (361)
...++|++|++++|... .+|..+..+++|+.|++++| .+..+..+..++ |+.|+++++. +....+..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------- 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENR-IFGGLDML-------- 90 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESCC-CCSCCCHH--------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCCc-CchHHHHH--------
Confidence 44578999999988876 68877788899999999987 466555577788 8888888754 44422211
Q ss_pred CCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch----hccCCCCcceEe
Q 018079 202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----YLLQMTVLQNLR 277 (361)
Q Consensus 202 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~ 277 (361)
+..+++|++|+++++ .+..++. ...+..+++|+.|+++++ .+..++. .+..+++|+.|+
T Consensus 91 -----------~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 91 -----------AEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp -----------HHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEET
T ss_pred -----------HhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEec
Confidence 224788888888775 4555442 235567788888888775 4555554 455677777777
Q ss_pred eccC
Q 018079 278 IFFC 281 (361)
Q Consensus 278 l~~c 281 (361)
+++|
T Consensus 154 l~~n 157 (168)
T 2ell_A 154 GYDR 157 (168)
T ss_dssp TEET
T ss_pred CCCC
Confidence 7765
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.03 E-value=2.8e-09 Score=91.28 Aligned_cols=85 Identities=21% Similarity=0.223 Sum_probs=38.3
Q ss_pred ccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCC
Q 018079 244 SIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLR 321 (361)
Q Consensus 244 ~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~ 321 (361)
..+++|+.|+++++ .++.+|..+ ..+++|+.|+++++ .++.++. -.+.++++|+.|+++++ .++.++ ..+..
T Consensus 77 ~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 150 (220)
T 2v9t_B 77 QGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRV---DAFQDLHNLNLLSLYDN-KLQTIAKGTFSP 150 (220)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred hCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCH---HHcCCCCCCCEEECCCC-cCCEECHHHHhC
Confidence 34445555555442 344444332 33455555555542 2222210 02334455555555552 344444 33555
Q ss_pred CCCCCeEEEeCCc
Q 018079 322 TTTLQKLTIWGCP 334 (361)
Q Consensus 322 l~~L~~L~l~~c~ 334 (361)
+++|+.|++++++
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 5555666555554
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.03 E-value=5.2e-09 Score=89.56 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=40.5
Q ss_pred cccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcc-ccccC
Q 018079 243 ISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVL-PDCLL 320 (361)
Q Consensus 243 ~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l-~~~l~ 320 (361)
+..+++|+.|+++++ .++.++.. +..+++|++|+++++ .+..++. -.+.++++|+.|+++++ .++.+ |..+.
T Consensus 77 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 150 (220)
T 2v70_A 77 FEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGN---DSFIGLSSVRLLSLYDN-QITTVAPGAFD 150 (220)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCT---TSSTTCTTCSEEECTTS-CCCCBCTTTTT
T ss_pred hCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECH---hHcCCCccCCEEECCCC-cCCEECHHHhc
Confidence 334555555555543 33433332 344555555555553 2222210 02334555555555553 34444 35555
Q ss_pred CCCCCCeEEEeCCc
Q 018079 321 RTTTLQKLTIWGCP 334 (361)
Q Consensus 321 ~l~~L~~L~l~~c~ 334 (361)
.+++|+.|++++++
T Consensus 151 ~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 151 TLHSLSTLNLLANP 164 (220)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEecCcC
Confidence 56666666666554
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.00 E-value=1.5e-09 Score=92.92 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=109.0
Q ss_pred ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079 2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL 81 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l 81 (361)
+.++++++ .+..+|..+. .++++|++ ..+.+..++ ...+.++++|+.|++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l-------~~n~i~~i~--------------------~~~~~~l~~L~~L~L 63 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRL-------EQNTIKVIP--------------------PGAFSPYKKLRRIDL 63 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEEC-------CSSCCCEEC--------------------TTSSTTCTTCCEEEC
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEEC-------CCCcCCCcC--------------------HhHhhCCCCCCEEEC
Confidence 35777877 8889998765 68899998 555555442 013677889999999
Q ss_pred EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh-hcCccCCeeeecC
Q 018079 82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TSLANLRELNLSL 160 (361)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~ 160 (361)
+.|.... ..+..+..+++|++|+++++....+|..+ ..+++|+.|++++
T Consensus 64 s~N~i~~------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 64 SNNQISE------------------------------LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CSSCCCE------------------------------ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCCC------------------------------cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 9887532 11456778899999999999988877654 6799999999999
Q ss_pred CCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCC
Q 018079 161 CFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGM 227 (361)
Q Consensus 161 ~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 227 (361)
+ .+..++. +..++ |+.|+++++ .++.++... +..+++|+.|++.+.
T Consensus 114 N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------------------~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 114 N-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGT-------------------FSPLRAIQTMHLAQN 162 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-------------------TTTCTTCCEEECCSS
T ss_pred C-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHH-------------------HhCCCCCCEEEeCCC
Confidence 6 5665543 78889 999999974 466666543 347889999999874
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=7.4e-10 Score=88.59 Aligned_cols=126 Identities=22% Similarity=0.305 Sum_probs=91.0
Q ss_pred CCCCccEEEecccCCC--CCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccccccee-ecccccccCCCCC
Q 018079 126 PPLNVEELWIIFYGGN--IFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKR-VGNEFLGIEESSE 201 (361)
Q Consensus 126 ~l~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~-l~~~~~~~~~~~~ 201 (361)
..+++++|++++|... .+|..+..+++|+.|++++| .+..++.++.++ |+.|+++++. +.. ++..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~--------- 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVL--------- 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHH---------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHH---------
Confidence 4478999999998876 57877788999999999987 566666678888 9999998754 444 3321
Q ss_pred CCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch----hccCCCCcceEe
Q 018079 202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----YLLQMTVLQNLR 277 (361)
Q Consensus 202 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~ 277 (361)
+..+++|++|+++++ .+..++. ...+..+++|+.|+++++ .++.++. .+..+++|+.|+
T Consensus 84 -----------~~~l~~L~~L~ls~N-~i~~~~~----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 84 -----------AEKCPNLTHLNLSGN-KIKDLST----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp -----------HHHCTTCCEEECTTS-CCCSHHH----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred -----------hhhCCCCCEEECCCC-cCCChHH----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence 235888999998875 4555442 235667888888888885 5666654 456677787777
Q ss_pred ec
Q 018079 278 IF 279 (361)
Q Consensus 278 l~ 279 (361)
++
T Consensus 147 l~ 148 (149)
T 2je0_A 147 GY 148 (149)
T ss_dssp TB
T ss_pred CC
Confidence 65
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.98 E-value=3.1e-12 Score=125.09 Aligned_cols=190 Identities=14% Similarity=0.087 Sum_probs=130.9
Q ss_pred hhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccC-------------CCC-CchhhhcCccCCeee-ec
Q 018079 95 EEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYG-------------GNI-FPKWLTSLANLRELN-LS 159 (361)
Q Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~-~p~~~~~l~~L~~L~-l~ 159 (361)
....++..|++..+. ...+++.++.+++|+.|+++++. ... .|..++.+++|+.|+ +.
T Consensus 346 ~~~~~L~~L~Ls~n~-------L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-------STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHH-------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhh-------HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 345667777777766 67778888888888888876543 111 345556677777776 33
Q ss_pred CCCCCCCCCC-------CCCCc---cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079 160 LCFNCEHLPQ-------LGKLP---LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE 229 (361)
Q Consensus 160 ~~~~~~~l~~-------l~~l~---L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 229 (361)
. ..+..++. +..++ |+.|+++++ .++.+|. ++.+++|+.|+++++ .
T Consensus 419 ~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~---------------------~~~l~~L~~L~Ls~N-~ 474 (567)
T 1dce_A 419 A-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH---------------------LEQLLLVTHLDLSHN-R 474 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC---------------------GGGGTTCCEEECCSS-C
T ss_pred h-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC---------------------ccccccCcEeecCcc-c
Confidence 2 12211111 12222 777888764 4555543 448899999999985 5
Q ss_pred chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccC--CcccccccCCCCCccEEEEe
Q 018079 230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEEL--PILEDHRTTDIPRLSSLRIG 307 (361)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l--p~L~~L~l~~l~~L~~L~l~ 307 (361)
+..+|. .+..+++|+.|+++++ .++.+| .+..+++|+.|+++++ .++.+ |. .++++++|+.|+++
T Consensus 475 l~~lp~------~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~----~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 475 LRALPP------ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQ----PLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCCCCG------GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTG----GGGGCTTCCEEECT
T ss_pred ccccch------hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcH----HHhcCCCCCEEEec
Confidence 665554 5668999999999984 788888 8888999999999985 56665 54 57779999999999
Q ss_pred cCCCCCcccccc----CCCCCCCeEE
Q 018079 308 YCPKLKVLPDCL----LRTTTLQKLT 329 (361)
Q Consensus 308 ~c~~l~~l~~~l----~~l~~L~~L~ 329 (361)
++ .++.+|... ..+|+|+.|+
T Consensus 542 ~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 542 GN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CC-cCCCCccHHHHHHHHCcccCccC
Confidence 85 566665332 3478888875
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=1.5e-09 Score=89.51 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=91.3
Q ss_pred cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079 124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED 202 (361)
Q Consensus 124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 202 (361)
...+.+|++|+++++....+|......++|+.|++++| .+..++.++.++ |++|+++++ .++.++..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~--------- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGL--------- 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCH---------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCcch---------
Confidence 45667899999999887777653334448999999986 566666678888 899998874 466665443
Q ss_pred CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh----ccCCCCcceEee
Q 018079 203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY----LLQMTVLQNLRI 278 (361)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~l~~L~~L~l 278 (361)
+..+++|++|+++++ .+..++. ...+..+++|+.|+++++ .+..+|.. +..+++|+.|++
T Consensus 84 ----------~~~l~~L~~L~L~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 84 ----------DQALPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ----------HHHCTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ----------hhcCCCCCEEECCCC-cCCcchh----hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence 236788888888874 4554443 234557888888888875 45566654 566777777777
Q ss_pred ccC
Q 018079 279 FFC 281 (361)
Q Consensus 279 ~~c 281 (361)
+++
T Consensus 148 ~~n 150 (176)
T 1a9n_A 148 QKV 150 (176)
T ss_dssp EEC
T ss_pred CcC
Confidence 664
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.94 E-value=2.8e-09 Score=91.78 Aligned_cols=143 Identities=17% Similarity=0.132 Sum_probs=90.1
Q ss_pred eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079 3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ 82 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 82 (361)
.++.+++ .+..+|.++. .+|++|++. .+.+..+. +..+.++++|+.|+++
T Consensus 23 ~v~c~~~-~l~~ip~~~~--~~L~~L~Ls-------~n~i~~~~--------------------~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 23 TVDCRSK-RHASVPAGIP--TNAQILYLH-------DNQITKLE--------------------PGVFDSLINLKELYLG 72 (229)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCSEEECC-------SSCCCCCC--------------------TTTTTTCTTCCEEECC
T ss_pred EeEccCC-CcCccCCCCC--CCCCEEEcC-------CCccCccC--------------------HHHhhCccCCcEEECC
Confidence 4666666 7778887664 778888883 33333221 0113344455555555
Q ss_pred ecCCCCCCcchhhhhhcccccccccccccccchhhHHHH-HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCC
Q 018079 83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLL-EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLC 161 (361)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~ 161 (361)
.|.........+...++++.|++..+. ...+. ..+..+++|++|+++++....+|..+..+++|+.|+++++
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQ-------LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCc-------CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC
Confidence 544433333333444444444444432 22222 3356788999999999988888888889999999999986
Q ss_pred CCCCCCCC--CCCCc-cceEecccc
Q 018079 162 FNCEHLPQ--LGKLP-LEKLQLKNL 183 (361)
Q Consensus 162 ~~~~~l~~--l~~l~-L~~L~l~~~ 183 (361)
.+..++. +..++ |+.|++.++
T Consensus 146 -~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 146 -QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred -cCCccCHHHHhCCCCCCEEEeeCC
Confidence 6666664 77788 999998874
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=2.4e-09 Score=87.40 Aligned_cols=128 Identities=18% Similarity=0.082 Sum_probs=92.9
Q ss_pred CceeecCCCCccc--ccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079 1 MRSLLNFGTNSLK--YMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLR 78 (361)
Q Consensus 1 L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~ 78 (361)
|++|++++| .+. .+|..+..+++|++|++.++ .+..+ ..+.++++|+.
T Consensus 26 L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-------~l~~~----------------------~~~~~l~~L~~ 75 (168)
T 2ell_A 26 VRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-------GLISV----------------------SNLPKLPKLKK 75 (168)
T ss_dssp CSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-------CCCCC----------------------SSCCCCSSCCE
T ss_pred CCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-------CCCCh----------------------hhhccCCCCCE
Confidence 578999998 777 88888889999999999433 22211 12677889999
Q ss_pred EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc--hhhhcCccCCee
Q 018079 79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP--KWLTSLANLREL 156 (361)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L 156 (361)
|+++.|.... . ++..+..+++|++|++++|....+| ..+..+++|+.|
T Consensus 76 L~Ls~N~l~~----------------------------~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 76 LELSENRIFG----------------------------G--LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp EEEESCCCCS----------------------------C--CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred EECcCCcCch----------------------------H--HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 9999887543 0 2233345788999999998877765 567788999999
Q ss_pred eecCCCCCCCCCC-----CCCCc-cceEeccccccceeec
Q 018079 157 NLSLCFNCEHLPQ-----LGKLP-LEKLQLKNLKSVKRVG 190 (361)
Q Consensus 157 ~l~~~~~~~~l~~-----l~~l~-L~~L~l~~~~~l~~l~ 190 (361)
++++| .+..++. +..++ |+.|+++++. +..++
T Consensus 126 ~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 126 DLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp ECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 99987 4555443 67788 9999998764 34444
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.91 E-value=1.3e-08 Score=87.03 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=96.4
Q ss_pred cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC---CCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079 131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS 206 (361)
Q Consensus 131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 206 (361)
++++++++....+|..+. ..++.|+++++ .+..++. +..++ |+.|+++++ .++.++...
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~------------- 76 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGA------------- 76 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTT-------------
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHH-------------
Confidence 477777777666776442 35678888885 4555432 56777 888888864 366665432
Q ss_pred CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcc
Q 018079 207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENME 285 (361)
Q Consensus 207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~ 285 (361)
+..+++|++|+++++ .+..++. ..+..+++|++|+++++ .++.+ |..+..+++|+.|+++++ .++
T Consensus 77 ------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 142 (220)
T 2v70_A 77 ------FEGASGVNEILLTSN-RLENVQH-----KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QIT 142 (220)
T ss_dssp ------TTTCTTCCEEECCSS-CCCCCCG-----GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCC
T ss_pred ------hCCCCCCCEEECCCC-ccCccCH-----hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCC
Confidence 347788888888874 4444433 34567888888888874 56655 456677888888888874 444
Q ss_pred cC-CcccccccCCCCCccEEEEecCC
Q 018079 286 EL-PILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 286 ~l-p~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
.+ |. .+..+++|+.|++.+++
T Consensus 143 ~~~~~----~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 143 TVAPG----AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CBCTT----TTTTCTTCCEEECCSCC
T ss_pred EECHH----HhcCCCCCCEEEecCcC
Confidence 44 32 45567888888888754
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=7.6e-10 Score=88.53 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=82.3
Q ss_pred CceeecCCCCccc--ccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079 1 MRSLLNFGTNSLK--YMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLR 78 (361)
Q Consensus 1 L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~ 78 (361)
|++|++++| .+. .+|..++.+++|++|++ ..+.+..+ ..+.++++|+.
T Consensus 19 l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l-------~~n~l~~~----------------------~~~~~l~~L~~ 68 (149)
T 2je0_A 19 VKELVLDNS-RSNEGKLEGLTDEFEELEFLST-------INVGLTSI----------------------ANLPKLNKLKK 68 (149)
T ss_dssp CSEEECTTC-BCBTTBCCSCCTTCTTCCEEEC-------TTSCCCCC----------------------TTCCCCTTCCE
T ss_pred CeEEEccCC-cCChhHHHHHHhhcCCCcEEEC-------cCCCCCCc----------------------hhhhcCCCCCE
Confidence 578999999 777 78888899999999999 34433321 12667788888
Q ss_pred EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc--hhhhcCccCCee
Q 018079 79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP--KWLTSLANLREL 156 (361)
Q Consensus 79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L 156 (361)
|+++.|.... . ++..+..+++|++|++++|....+| ..+..+++|+.|
T Consensus 69 L~Ls~n~i~~----------------------------~--~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 69 LELSDNRVSG----------------------------G--LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp EECCSSCCCS----------------------------C--THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred EECCCCcccc----------------------------h--HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 8888877532 0 2333445677888888887766544 566778888888
Q ss_pred eecCCCCCCCCCC-----CCCCc-cceEecc
Q 018079 157 NLSLCFNCEHLPQ-----LGKLP-LEKLQLK 181 (361)
Q Consensus 157 ~l~~~~~~~~l~~-----l~~l~-L~~L~l~ 181 (361)
++++| .+..++. +..++ |+.|+++
T Consensus 119 ~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 119 DLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred eCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 88876 4444443 55566 7777664
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.78 E-value=6.8e-08 Score=88.99 Aligned_cols=148 Identities=21% Similarity=0.270 Sum_probs=109.3
Q ss_pred CCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccc
Q 018079 153 LRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKEL 230 (361)
Q Consensus 153 L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l 230 (361)
-+.++++++ .+..+|. .++ ++.|++++ +.++.++...+. ..+++|++|+++++ .+
T Consensus 20 ~~~l~c~~~-~l~~iP~--~~~~~l~~L~Ls~-N~l~~l~~~~~~------------------~~l~~L~~L~L~~N-~i 76 (361)
T 2xot_A 20 SNILSCSKQ-QLPNVPQ--SLPSYTALLDLSH-NNLSRLRAEWTP------------------TRLTNLHSLLLSHN-HL 76 (361)
T ss_dssp TTEEECCSS-CCSSCCS--SCCTTCSEEECCS-SCCCEECTTSSS------------------SCCTTCCEEECCSS-CC
T ss_pred CCEEEeCCC-CcCccCc--cCCCCCCEEECCC-CCCCccChhhhh------------------hcccccCEEECCCC-cC
Confidence 356777764 6777775 345 99999997 457777765432 16899999999984 56
Q ss_pred hhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079 231 EEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC 309 (361)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c 309 (361)
..++. ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++ .+..++. -.+.++++|+.|++++
T Consensus 77 ~~i~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~---~~~~~l~~L~~L~L~~- 145 (361)
T 2xot_A 77 NFISS-----EAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDR---NAFEDMAQLQKLYLSQ- 145 (361)
T ss_dssp CEECT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECT---TTTTTCTTCCEEECCS-
T ss_pred CccCh-----hhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECH---HHhCCcccCCEEECCC-
Confidence 55543 35678999999999985 6887766 4677999999999985 4444321 1567789999999998
Q ss_pred CCCCcccccc----CCCCCCCeEEEeCCc
Q 018079 310 PKLKVLPDCL----LRTTTLQKLTIWGCP 334 (361)
Q Consensus 310 ~~l~~l~~~l----~~l~~L~~L~l~~c~ 334 (361)
+.++.+|..+ ..+++|+.|+++++.
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 5788888544 579999999999884
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=6.4e-08 Score=87.93 Aligned_cols=196 Identities=17% Similarity=0.194 Sum_probs=112.3
Q ss_pred CCCccEEEecccCCC--------------------CCchh-hhc--------CccCCeeeecCCCCCCCCCC--CCCCc-
Q 018079 127 PLNVEELWIIFYGGN--------------------IFPKW-LTS--------LANLRELNLSLCFNCEHLPQ--LGKLP- 174 (361)
Q Consensus 127 l~~L~~L~l~~~~~~--------------------~~p~~-~~~--------l~~L~~L~l~~~~~~~~l~~--l~~l~- 174 (361)
+++|++|+++++... .+|.. +.. +++|+.+++.. .+..++. +..++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 788999999887655 12222 225 78899988887 5665555 77888
Q ss_pred cceEeccccccceeecccccccCC-CCCCCCCC------CC--CCCcccCCCCcc-EEEEcCCccchhhhhhh-------
Q 018079 175 LEKLQLKNLKSVKRVGNEFLGIEE-SSEDGPSS------SS--SSPSVIAFPKLK-SLEIDGMKELEEWNYRI------- 237 (361)
Q Consensus 175 L~~L~l~~~~~l~~l~~~~~~~~~-~~~~~~~~------~~--~~~~l~~~~~L~-~L~L~~~~~l~~~~~~~------- 237 (361)
|+.+.+.+ ..+..++...+.... ........ .. ....+..+.+|+ .+.+.....+.......
T Consensus 126 L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 126 LKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp CCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred cceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 99999986 345566655442210 00000000 00 011122333343 33333222222111100
Q ss_pred c-----c-------ccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCcc-E
Q 018079 238 T-----R-------KENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLS-S 303 (361)
Q Consensus 238 ~-----~-------~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~-~ 303 (361)
. + ......+++|+.+++.++ .++.++... .++++|+++++... ++.++ .-.+.+|++|+ .
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~---~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIG---QRVFSNCGRLAGT 278 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEEC---TTTTTTCTTCCEE
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceeh---HHHhhCChhccEE
Confidence 0 0 000013788999999874 578887764 55889999998762 54444 23566788888 8
Q ss_pred EEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079 304 LRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC 333 (361)
Q Consensus 304 L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c 333 (361)
+.+.+ .++.++ ..|..+++|+.+++.+.
T Consensus 279 l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 279 LELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred EEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 88876 677776 67788888888888544
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.68 E-value=1.1e-07 Score=79.45 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=82.3
Q ss_pred CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccc
Q 018079 216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHR 294 (361)
Q Consensus 216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~ 294 (361)
+++|++|++++. .+..++. ...+..+++|+.|+++++ .++.+ |..+..+++|++|+++++ .++.++. -.
T Consensus 28 ~~~l~~L~l~~n-~i~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~ 97 (192)
T 1w8a_A 28 PLHTTELLLNDN-ELGRISS----DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISN---KM 97 (192)
T ss_dssp CTTCSEEECCSC-CCCSBCC----SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECS---SS
T ss_pred CCCCCEEECCCC-cCCccCC----ccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCH---HH
Confidence 348999999884 5555543 223668999999999985 56666 667788999999999985 4555442 13
Q ss_pred cCCCCCccEEEEecCCCCCcc-ccccCCCCCCCeEEEeCCcc
Q 018079 295 TTDIPRLSSLRIGYCPKLKVL-PDCLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 295 l~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~ 335 (361)
++++++|+.|+++++ .++.+ |..+..+++|+.|++++++-
T Consensus 98 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred hcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 567899999999985 55554 67889999999999998863
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=1.1e-07 Score=86.24 Aligned_cols=38 Identities=5% Similarity=-0.084 Sum_probs=23.5
Q ss_pred hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccc
Q 018079 69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGE 106 (361)
Q Consensus 69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (361)
.+.+|++|+.++++.+.........+.....+..++..
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 47889999999998776544444444444444444433
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.65 E-value=2.9e-08 Score=99.83 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=40.1
Q ss_pred cCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCC
Q 018079 245 IMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTT 324 (361)
Q Consensus 245 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 324 (361)
.+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.+|. .++++++|+.|++++| .++.+|..+..+++
T Consensus 245 ~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~ 317 (727)
T 4b8c_D 245 KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPA----ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCN 317 (727)
T ss_dssp GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCS----SGGGGTTCSEEECCSS-CCCCCCSSTTSCTT
T ss_pred CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccCh----hhcCCCCCCEEECCCC-CCCccChhhhcCCC
Confidence 4455555555443 34445544444555555555543 2334443 3344455555555543 34455544555555
Q ss_pred CCeEEEeCCc
Q 018079 325 LQKLTIWGCP 334 (361)
Q Consensus 325 L~~L~l~~c~ 334 (361)
|+.|++++|+
T Consensus 318 L~~L~L~~N~ 327 (727)
T 4b8c_D 318 LQFLGVEGNP 327 (727)
T ss_dssp CCCEECTTSC
T ss_pred ccEEeCCCCc
Confidence 5555555543
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.64 E-value=2.5e-08 Score=100.36 Aligned_cols=37 Identities=16% Similarity=-0.043 Sum_probs=17.8
Q ss_pred ccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079 244 SIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC 281 (361)
Q Consensus 244 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 281 (361)
..+++|+.|+++++ .++.+|..+..+++|+.|+++++
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 34445555555443 34444444444555555555543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.62 E-value=1.6e-07 Score=78.46 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=21.7
Q ss_pred EEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccc
Q 018079 132 ELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKN 182 (361)
Q Consensus 132 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~ 182 (361)
+++++++....+|..+ .++++.|+++++ .+..+|. +..++ |+.|++++
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~ 63 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN 63 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCC
Confidence 4444444444444322 234555555553 3334433 44444 55555554
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.61 E-value=1.4e-07 Score=78.65 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=63.1
Q ss_pred cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC---CCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079 131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS 206 (361)
Q Consensus 131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 206 (361)
++++++++....+|..+. .+++.|+++++ .+..++. ++.++ |+.|+++++ .++.+.+..
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~------------- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA------------- 73 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-------------
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-------------
Confidence 456666665555555332 26666666664 4444432 45556 666666653 244433221
Q ss_pred CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeecc
Q 018079 207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFF 280 (361)
Q Consensus 207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~ 280 (361)
+..+++|++|++++. .+..++. ..+..+++|+.|+++++ .++.+ |..+..+++|+.|++++
T Consensus 74 ------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 74 ------FEGASHIQELQLGEN-KIKEISN-----KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ------TTTCTTCCEEECCSC-CCCEECS-----SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred ------cCCcccCCEEECCCC-cCCccCH-----HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCC
Confidence 335666666666653 3433332 23445666666666663 34433 44455566666666665
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.61 E-value=3.5e-07 Score=76.41 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=83.3
Q ss_pred CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccc
Q 018079 216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHR 294 (361)
Q Consensus 216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~ 294 (361)
.++|++|++.+. .+..++. .+..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.++. -.
T Consensus 30 ~~~l~~L~L~~n-~i~~ip~------~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~---~~ 97 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVPK------ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPP---RT 97 (193)
T ss_dssp CTTCCEEECCSS-CCCSCCG------GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT---TT
T ss_pred CCCCCEEECCCC-cCchhHH------HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCH---HH
Confidence 468999999874 5555443 5668999999999985 6777764 4677999999999985 5655552 14
Q ss_pred cCCCCCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCcc
Q 018079 295 TTDIPRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 295 l~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~ 335 (361)
+.++++|+.|++++ +.++.+|. .+..+++|+.|+++++|-
T Consensus 98 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 98 FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66789999999998 57778884 588899999999998864
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.60 E-value=2.7e-08 Score=81.84 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=85.5
Q ss_pred CceeecCCCCcccccCccCCCcc-ccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079 1 MRSLLNFGTNSLKYMPIGISKLT-SLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL 79 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L 79 (361)
|++|++++| .+..+|. +..+. +|++|++ ..+.+..+. .+.++++|+.|
T Consensus 21 L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~L-------s~N~l~~~~----------------------~l~~l~~L~~L 69 (176)
T 1a9n_A 21 DRELDLRGY-KIPVIEN-LGATLDQFDAIDF-------SDNEIRKLD----------------------GFPLLRRLKTL 69 (176)
T ss_dssp CEEEECTTS-CCCSCCC-GGGGTTCCSEEEC-------CSSCCCEEC----------------------CCCCCSSCCEE
T ss_pred ceEEEeeCC-CCchhHH-hhhcCCCCCEEEC-------CCCCCCccc----------------------ccccCCCCCEE
Confidence 567888888 7777754 55555 7888888 444333221 26678899999
Q ss_pred EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHh-cCCCCCccEEEecccCCCCCch--hhhcCccCCee
Q 018079 80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEA-LQPPLNVEELWIIFYGGNIFPK--WLTSLANLREL 156 (361)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L 156 (361)
+++.|.... ++.. +..+++|++|++++|....+|. .+..+++|+.|
T Consensus 70 ~Ls~N~l~~-------------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 70 LVNNNRICR-------------------------------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp ECCSSCCCE-------------------------------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred ECCCCcccc-------------------------------cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 999887532 1111 2456889999999988877776 67789999999
Q ss_pred eecCCCCCCCCCC-----CCCCc-cceEeccccc
Q 018079 157 NLSLCFNCEHLPQ-----LGKLP-LEKLQLKNLK 184 (361)
Q Consensus 157 ~l~~~~~~~~l~~-----l~~l~-L~~L~l~~~~ 184 (361)
++++| .+..+|. +..+| |+.|+++++.
T Consensus 119 ~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 119 CILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99987 4555554 66788 9999888654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.58 E-value=2.1e-07 Score=76.40 Aligned_cols=120 Identities=22% Similarity=0.277 Sum_probs=55.1
Q ss_pred cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCC
Q 018079 131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS 207 (361)
Q Consensus 131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 207 (361)
+.+++.++....+|.. ..++|+.|+++++ .+..++. +..++ |++|+++++ .++.++...
T Consensus 10 ~~l~~~~~~l~~~p~~--~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-------------- 71 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG--IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV-------------- 71 (177)
T ss_dssp TEEECCSSCCSSCCTT--CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT--------------
T ss_pred CEEEecCCCCccCCCC--CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhH--------------
Confidence 4555555554445532 2345666666654 3444433 44555 666666543 234333221
Q ss_pred CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeecc
Q 018079 208 SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFF 280 (361)
Q Consensus 208 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~ 280 (361)
+..+++|++|+++++ .+..++. ..+..+++|+.|+++++ .++.+|..+ ..+++|+.|++++
T Consensus 72 -----~~~l~~L~~L~l~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 72 -----FDKLTKLTILYLHEN-KLQSLPN-----GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp -----TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred -----ccCCCccCEEECCCC-CccccCH-----HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC
Confidence 224555555555542 2332222 12334555555555553 344444432 3344555555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.55 E-value=1.5e-09 Score=91.28 Aligned_cols=54 Identities=22% Similarity=0.184 Sum_probs=33.2
Q ss_pred CccEEEeccc--CCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccc
Q 018079 129 NVEELWIIFY--GGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNL 183 (361)
Q Consensus 129 ~L~~L~l~~~--~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~ 183 (361)
.++...+.+. ....+|..+..+++|+.|++++| .+..+|.+..++ |+.|+++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRN 80 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCC
Confidence 3455555543 22235557778888888888875 455555555566 777777653
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=1.8e-09 Score=90.76 Aligned_cols=127 Identities=15% Similarity=0.187 Sum_probs=89.7
Q ss_pred HHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCC
Q 018079 121 LEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE 198 (361)
Q Consensus 121 ~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~ 198 (361)
+..+..+++|++|+++++....+| .+..+++|+.|++++| .+..+|. +..++ |+.|+++++ .++.++ .
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~------ 110 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-G------ 110 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H------
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-c------
Confidence 345667889999999998877788 7888999999999997 5667776 44567 999999875 455544 1
Q ss_pred CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-ch----------hc
Q 018079 199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PD----------YL 267 (361)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~----------~~ 267 (361)
+..+++|+.|+++++ .+..++. ...+..+++|+.|++++++ +... |. .+
T Consensus 111 --------------~~~l~~L~~L~l~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 111 --------------IEKLVNLRVLYMSNN-KITNWGE----IDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp --------------HHHHHHSSEEEESEE-ECCCHHH----HHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHH
T ss_pred --------------cccCCCCCEEECCCC-cCCchhH----HHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHH
Confidence 447788999999874 4554433 2345678899999998753 3322 21 14
Q ss_pred cCCCCcceEe
Q 018079 268 LQMTVLQNLR 277 (361)
Q Consensus 268 ~~l~~L~~L~ 277 (361)
..+++|+.|+
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4567777665
No 136
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=2.7e-08 Score=81.20 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.0
Q ss_pred CCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCccchh
Q 018079 299 PRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPLLEN 338 (361)
Q Consensus 299 ~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~ 338 (361)
++|++|++++|+++++-. ..+.++++|+.|++++|+.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 356677777777766644 3455677777777777777765
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.50 E-value=9.7e-07 Score=72.38 Aligned_cols=109 Identities=24% Similarity=0.328 Sum_probs=83.7
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCccccc
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILEDH 293 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L 293 (361)
.+++|+.|+++++ .+..++. ..+..+++|+.|+++++ .++.++.. +..+++|+.|+++++ .++.+|. -
T Consensus 26 ~~~~l~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---~ 94 (177)
T 2o6r_A 26 IPSSATRLELESN-KLQSLPH-----GVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN---G 94 (177)
T ss_dssp CCTTCSEEECCSS-CCCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---T
T ss_pred CCCCCcEEEeCCC-cccEeCH-----HHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH---H
Confidence 3578999999984 4554443 34567899999999985 67777765 477999999999985 5665553 1
Q ss_pred ccCCCCCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCcc
Q 018079 294 RTTDIPRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCPL 335 (361)
Q Consensus 294 ~l~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~ 335 (361)
.+.++++|+.|+++++ .++.+|. .+..+++|+.|++++++-
T Consensus 95 ~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 95 VFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 3466899999999985 7778885 458899999999999863
No 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=8.7e-07 Score=81.40 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=94.4
Q ss_pred hHHHHHhcCCCCCccEEEecccCC----------CCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccccc
Q 018079 117 DKQLLEALQPPLNVEELWIIFYGG----------NIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKS 185 (361)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~l~~~~~----------~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~ 185 (361)
...+.+++..+++|+.|.+.+... ..+..++..+++|+.|.++++... .++.+ .++ |+.|.+..|.
T Consensus 128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~- 204 (362)
T 2ra8_A 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGG- 204 (362)
T ss_dssp HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSB-
T ss_pred HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCC-
Confidence 334445556678999998865321 124455668889999999886333 33443 367 9999987543
Q ss_pred ceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc-------chhhhhhhccccccccCCCccEEEEecCC
Q 018079 186 VKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE-------LEEWNYRITRKENISIMPRLSSLEVSSCN 258 (361)
Q Consensus 186 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~-------l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 258 (361)
+..-...... ...+|+|+.|+|+...+ +..+.. .-....+|+|+.|.+.+|.
T Consensus 205 l~~~~l~~l~-----------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~----~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 205 LPDSVVEDIL-----------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRP----LFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp CCHHHHHHHH-----------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGG----GSCTTTCTTCCEEEEESCT
T ss_pred CChHHHHHHH-----------------HccCCCCcEEEEeccccccccchhHHHHHH----HHhcCCCCCcCEEeCCCCC
Confidence 3221111111 12689999999863211 111111 0111358899999998874
Q ss_pred CCCccchhc---cCCCCcceEeeccCCCccc-----CCcccccccCCCCCccEEEEecCC
Q 018079 259 KLKALPDYL---LQMTVLQNLRIFFCENMEE-----LPILEDHRTTDIPRLSSLRIGYCP 310 (361)
Q Consensus 259 ~l~~l~~~~---~~l~~L~~L~l~~c~~l~~-----lp~L~~L~l~~l~~L~~L~l~~c~ 310 (361)
.....+..+ ..+++|++|+++.+ .++. ++. .+..+++|+.|++++|.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~----~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLD----HVDKIKHLKFINMKYNY 318 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHT----THHHHTTCSEEECCSBB
T ss_pred CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHh----hcccCCcceEEECCCCc
Confidence 322222222 34788899998763 4433 111 12346788888888763
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.26 E-value=9.1e-07 Score=72.51 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=58.0
Q ss_pred eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079 3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ 82 (361)
Q Consensus 3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 82 (361)
.++++++ .+..+|.++. .+|++|++ ..+.+..+. +..+.++++|+.|+++
T Consensus 16 ~l~~~~n-~l~~iP~~~~--~~L~~L~L-------s~N~l~~~~--------------------~~~~~~l~~L~~L~Ls 65 (174)
T 2r9u_A 16 LVNCQNI-RLASVPAGIP--TDKQRLWL-------NNNQITKLE--------------------PGVFDHLVNLQQLYFN 65 (174)
T ss_dssp EEECCSS-CCSSCCSCCC--TTCSEEEC-------CSSCCCCCC--------------------TTTTTTCTTCCEEECC
T ss_pred EEEeCCC-CCCccCCCcC--CCCcEEEe-------CCCCccccC--------------------HHHhcCCcCCCEEECC
Confidence 5666766 6777776654 66777777 444444331 0125566677777777
Q ss_pred ecCCCCCCcchhhhhhcccccccccccccccchhhHHHH-HhcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecC
Q 018079 83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLL-EALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSL 160 (361)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~ 160 (361)
.|.... ++ ..+..+++|++|+++++....+|.. +..+++|+.|++++
T Consensus 66 ~N~l~~-------------------------------i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 66 SNKLTA-------------------------------IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SSCCCC-------------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCCCc-------------------------------cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 665422 11 1235566677777777666555543 55666777777766
Q ss_pred C
Q 018079 161 C 161 (361)
Q Consensus 161 ~ 161 (361)
+
T Consensus 115 N 115 (174)
T 2r9u_A 115 N 115 (174)
T ss_dssp S
T ss_pred C
Confidence 4
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.20 E-value=1.4e-06 Score=71.12 Aligned_cols=100 Identities=18% Similarity=0.115 Sum_probs=66.2
Q ss_pred ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079 2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL 81 (361)
Q Consensus 2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l 81 (361)
++++++++ .+..+|.++. .+|++|++ ..+.+..+. +..+.++++|+.|++
T Consensus 12 ~~l~~s~n-~l~~ip~~~~--~~l~~L~L-------~~N~i~~~~--------------------~~~~~~l~~L~~L~L 61 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGIP--TTTQVLYL-------YDNQITKLE--------------------PGVFDRLTQLTRLDL 61 (170)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEEC-------CSSCCCCCC--------------------TTTTTTCTTCSEEEC
T ss_pred CEEEeCCC-CcCccCccCC--CCCcEEEc-------CCCcCCccC--------------------hhhhcCcccCCEEEC
Confidence 56788877 7888887664 77888888 455554432 113567778888888
Q ss_pred EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeeecC
Q 018079 82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSL 160 (361)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~ 160 (361)
+.|..... ....+..+++|++|+++++....+|. .+..+++|+.|++++
T Consensus 62 s~N~l~~l------------------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 62 DNNQLTVL------------------------------PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSSCCCCC------------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCcc------------------------------ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 87764320 01234667778888888777666655 356777788888777
Q ss_pred C
Q 018079 161 C 161 (361)
Q Consensus 161 ~ 161 (361)
+
T Consensus 112 N 112 (170)
T 3g39_A 112 N 112 (170)
T ss_dssp S
T ss_pred C
Confidence 5
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=1.5e-06 Score=70.77 Aligned_cols=18 Identities=22% Similarity=0.229 Sum_probs=10.7
Q ss_pred CCCCccEEEEecCCCCCc
Q 018079 297 DIPRLSSLRIGYCPKLKV 314 (361)
Q Consensus 297 ~l~~L~~L~l~~c~~l~~ 314 (361)
.+++|++|++++|+.+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 355566666666666655
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.18 E-value=3.2e-05 Score=72.00 Aligned_cols=82 Identities=10% Similarity=0.099 Sum_probs=41.0
Q ss_pred ccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-ccc
Q 018079 242 NISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCL 319 (361)
Q Consensus 242 ~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l 319 (361)
.+.+|++|+.+.+.. .++.++... .+|++|+.+.+.. +++.++ .-.+.++ +|+.+.+.++ ....++ ..+
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~---~~aF~~~-~L~~l~l~~n-~~~~l~~~~F 365 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQIN---FSAFNNT-GIKEVKVEGT-TPPQVFEKVW 365 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEEC---TTSSSSS-CCCEEEECCS-SCCBCCCSSC
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEc---HHhCCCC-CCCEEEEcCC-CCcccccccc
Confidence 445566666666642 355554433 3356666666643 222222 1234446 6667766653 333333 344
Q ss_pred CCCC-CCCeEEEeC
Q 018079 320 LRTT-TLQKLTIWG 332 (361)
Q Consensus 320 ~~l~-~L~~L~l~~ 332 (361)
..++ +++.|.+-.
T Consensus 366 ~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 366 YGFPDDITVIRVPA 379 (401)
T ss_dssp CCSCTTCCEEEECG
T ss_pred cCCCCCccEEEeCH
Confidence 4453 456666644
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.16 E-value=7.7e-06 Score=66.90 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=63.3
Q ss_pred cEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCC
Q 018079 220 KSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDI 298 (361)
Q Consensus 220 ~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l 298 (361)
+.+++++ ..+..++. . ..++|+.|+++++ .++.+ |..+..+++|+.|+++++ .++.+|. -.+.++
T Consensus 15 ~~l~~~~-n~l~~iP~------~--~~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPA------G--IPTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT---GVFDKL 80 (174)
T ss_dssp SEEECCS-SCCSSCCS------C--CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTC
T ss_pred cEEEeCC-CCCCccCC------C--cCCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccCh---hHhCCc
Confidence 4555554 24444443 1 1367778877774 56655 445666777888888774 5555553 123557
Q ss_pred CCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCc
Q 018079 299 PRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 299 ~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~ 334 (361)
++|+.|++++ +.++.+|. .+..+++|+.|++++++
T Consensus 81 ~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 81 TQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred chhhEEECCC-CccceeCHHHhccccCCCEEEeCCCC
Confidence 7788888877 46667764 37777888888887775
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.15 E-value=4.3e-05 Score=71.14 Aligned_cols=172 Identities=12% Similarity=0.143 Sum_probs=108.9
Q ss_pred hcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCC
Q 018079 123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEES 199 (361)
Q Consensus 123 ~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~ 199 (361)
+...+.+|+.+++.++....++.......+|+.+.+.. .+..++. +..++ |+.+.+.+ +++.++...+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF----- 245 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF----- 245 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTT-----
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccccc-----
Confidence 44566677777776665555555444456677777653 2444443 55666 77777753 3555555443
Q ss_pred CCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCC----CCccchh-ccCCCCcc
Q 018079 200 SEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNK----LKALPDY-LLQMTVLQ 274 (361)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~l~~~-~~~l~~L~ 274 (361)
.+ .+|+.+.+.. ++..+.. ..+.++++|+.+.+.+... ...++.. +.+|++|+
T Consensus 246 --------------~~-~~L~~i~lp~--~i~~I~~-----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 246 --------------RE-SGITTVKLPN--GVTNIAS-----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp --------------TT-CCCSEEEEET--TCCEECT-----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred --------------cc-CCccEEEeCC--CccEECh-----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 23 5778887743 3443332 4566788899998876321 1135443 45588888
Q ss_pred eEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079 275 NLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC 333 (361)
Q Consensus 275 ~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c 333 (361)
.+.+.. .++.++ .-.+.+|++|+.+.+.+ .++.++ ..|.++ +|+.+++.++
T Consensus 304 ~l~l~~--~i~~I~---~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 304 RFEIPE--SIRILG---QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECCCT--TCCEEC---TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred eEEeCC--ceEEEh---hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 888874 344433 23566789999999954 577887 678888 9999999876
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=5.9e-07 Score=82.53 Aligned_cols=135 Identities=22% Similarity=0.194 Sum_probs=85.5
Q ss_pred HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCC--CCCC--CCCc-cceEecccccc-------ceee
Q 018079 122 EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEH--LPQL--GKLP-LEKLQLKNLKS-------VKRV 189 (361)
Q Consensus 122 ~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--l~~l--~~l~-L~~L~l~~~~~-------l~~l 189 (361)
..+..+|+|+.|.+.++....++. + .+++|++|++..|. +.. +..+ ..+| |+.|+++.+.+ +..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 345667899999999876555655 3 37899999998763 331 1112 3688 99998853211 1111
Q ss_pred cccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc-----cc
Q 018079 190 GNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-----LP 264 (361)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~ 264 (361)
...+. ...||+|++|++.+|.-.......+ .....+|+|+.|+++. +.+.. ++
T Consensus 243 ~~~l~------------------~~~~p~Lr~L~L~~~~i~~~~~~~l---a~a~~~~~L~~LdLs~-n~L~d~G~~~L~ 300 (362)
T 2ra8_A 243 RPLFS------------------KDRFPNLKWLGIVDAEEQNVVVEMF---LESDILPQLETMDISA-GVLTDEGARLLL 300 (362)
T ss_dssp GGGSC------------------TTTCTTCCEEEEESCTTHHHHHHHH---HHCSSGGGCSEEECCS-SCCBHHHHHHHH
T ss_pred HHHHh------------------cCCCCCcCEEeCCCCCCchHHHHHH---HhCccCCCCCEEECCC-CCCChHHHHHHH
Confidence 11110 1268999999998875433222111 1123589999999976 45654 34
Q ss_pred hhccCCCCcceEeeccC
Q 018079 265 DYLLQMTVLQNLRIFFC 281 (361)
Q Consensus 265 ~~~~~l~~L~~L~l~~c 281 (361)
..+..+++|+.|++++|
T Consensus 301 ~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TTHHHHTTCSEEECCSB
T ss_pred hhcccCCcceEEECCCC
Confidence 44456899999999886
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.09 E-value=1.1e-05 Score=65.62 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=22.2
Q ss_pred cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079 131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN 182 (361)
Q Consensus 131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~ 182 (361)
+.++++++....+|..+ .++++.|+++++ .+..+++ +..++ |+.|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~ 63 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN 63 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCC
Confidence 44555554444444432 244555555553 3333322 44444 55555543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.90 E-value=4.4e-05 Score=69.46 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=65.7
Q ss_pred EEEeccc-CCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCC
Q 018079 132 ELWIIFY-GGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS 207 (361)
Q Consensus 132 ~L~l~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 207 (361)
.++..+. ....+|. +..+.+|+.|++++++.+..++. +..++ |+.|+++++ .++.+++..
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-------------- 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA-------------- 75 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG--------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH--------------
Confidence 4566665 5556777 77788888888886446776664 77788 888888864 567766543
Q ss_pred CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecC
Q 018079 208 SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSC 257 (361)
Q Consensus 208 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 257 (361)
+..+++|+.|+|++ ..+..++. ..+..++ |+.|++.++
T Consensus 76 -----~~~l~~L~~L~l~~-N~l~~~~~-----~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 76 -----FHFTPRLSRLNLSF-NALESLSW-----KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp -----GGSCSCCCEEECCS-SCCSCCCS-----TTTCSCC-CCEEECCSS
T ss_pred -----hcCCcCCCEEeCCC-CccceeCH-----HHcccCC-ceEEEeeCC
Confidence 33678888888887 45555543 2223333 888888763
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=3.5e-06 Score=77.81 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=22.7
Q ss_pred HHHhcCCC-CCccEEEecccCCCC--CchhhhcCccCCeeeecCC
Q 018079 120 LLEALQPP-LNVEELWIIFYGGNI--FPKWLTSLANLRELNLSLC 161 (361)
Q Consensus 120 ~~~~l~~l-~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~ 161 (361)
+...+... ++|++|++++|.... .......+++|+.|++++|
T Consensus 92 l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 92 VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 33444433 577777777765432 1111224556777777775
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.68 E-value=0.00013 Score=66.21 Aligned_cols=83 Identities=24% Similarity=0.234 Sum_probs=35.6
Q ss_pred cCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccc-cCCC
Q 018079 245 IMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC-LLRT 322 (361)
Q Consensus 245 ~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~-l~~l 322 (361)
.+++|+.|++++++.++.++. .+..+++|+.|+++++ .++.++. -.+.++++|+.|++++ ++++.+|.. +..+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~ 103 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP---DAFHFTPRLSRLNLSF-NALESLSWKTVQGL 103 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT---TGGGSCSCCCEEECCS-SCCSCCCSTTTCSC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH---HHhcCCcCCCEEeCCC-CccceeCHHHcccC
Confidence 344455555543334444442 2344555555555543 3333221 0233445555555554 344444422 2222
Q ss_pred CCCCeEEEeCC
Q 018079 323 TTLQKLTIWGC 333 (361)
Q Consensus 323 ~~L~~L~l~~c 333 (361)
+ |+.|++.++
T Consensus 104 ~-L~~l~l~~N 113 (347)
T 2ifg_A 104 S-LQELVLSGN 113 (347)
T ss_dssp C-CCEEECCSS
T ss_pred C-ceEEEeeCC
Confidence 2 555555544
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.52 E-value=0.00064 Score=62.94 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=55.5
Q ss_pred ccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-ccc
Q 018079 242 NISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCL 319 (361)
Q Consensus 242 ~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l 319 (361)
.+..+.+|+.+.+.+ .++.++... .++.+|+++.+.. .++.++ .-.+.+|.+|+.+.+.. .++.++ ..|
T Consensus 292 ~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~---~~aF~~c~~L~~i~lp~--~l~~I~~~aF 362 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIG---KRSFRGCTSLSNINFPL--SLRKIGANAF 362 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---TTTTTTCTTCCEECCCT--TCCEECTTTB
T ss_pred ccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEh---HHhccCCCCCCEEEECc--cccEehHHHh
Confidence 345677888888754 466666543 4578888888753 233332 23566688888888854 377777 567
Q ss_pred CCCCCCCeEEEeC
Q 018079 320 LRTTTLQKLTIWG 332 (361)
Q Consensus 320 ~~l~~L~~L~l~~ 332 (361)
..+++|+.+++..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 8888999988864
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.42 E-value=2.3e-05 Score=72.29 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=86.2
Q ss_pred CceeecCCCCcccccC-----ccCC-CccccceecceeeecCCCCCccccc----c-eeceeEEcCCCCCCChH-HHHHh
Q 018079 1 MRSLLNFGTNSLKYMP-----IGIS-KLTSLRRLDKFVVGGGVDGSNTGRL----Q-LRGECSIEGLCNVSHVD-EAERL 68 (361)
Q Consensus 1 L~~L~l~~~~~l~~lP-----~~i~-~L~~L~~L~l~~~~~~~~~~~l~~L----~-L~~~l~l~~l~~~~~~~-~~~~~ 68 (361)
|++|++++| .+.... ..+. ...+|++|++.++... ...+..+ . ++ .+.+.+.. +.+.. .....
T Consensus 74 L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~-~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 74 LRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRAR-KLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp CCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEE-EEECCSSC-CCHHHHHHHHH
T ss_pred CCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhcc-HhhcCCCC-CCHHHHHHHHH
Confidence 567888888 555422 2122 2267888888444322 0111111 1 22 33333321 11111 22222
Q ss_pred hc-CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-----
Q 018079 69 QL-SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI----- 142 (361)
Q Consensus 69 ~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----- 142 (361)
.+ ...++|++|++++|...+ .....+...+...++|++|++++|....
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~--------------------------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTA--------------------------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHH--------------------------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HHHhcCCccceeeCCCCCCCh--------------------------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 23 346678888887776421 0033456667788899999999987533
Q ss_pred CchhhhcCccCCeeeecCCCCCCCCC-----C-CCCCc-cceEeccccccceee
Q 018079 143 FPKWLTSLANLRELNLSLCFNCEHLP-----Q-LGKLP-LEKLQLKNLKSVKRV 189 (361)
Q Consensus 143 ~p~~~~~l~~L~~L~l~~~~~~~~l~-----~-l~~l~-L~~L~l~~~~~l~~l 189 (361)
++..+...++|+.|++++| .++... . +...+ |++|+++++. +...
T Consensus 203 L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred HHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 3445567789999999997 444221 1 33457 9999999754 4443
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.12 E-value=0.005 Score=56.83 Aligned_cols=106 Identities=17% Similarity=0.257 Sum_probs=72.9
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILE 291 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~ 291 (361)
+.++.+|+.+.+.. ....+. ...+..+++|+.+.+.. .++.++... .+|.+|+++.+.. .++.+.
T Consensus 261 F~~c~~L~~i~lp~--~~~~I~-----~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~--- 326 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSIG-----TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQIL--- 326 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEEC-----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEEC---
T ss_pred eeecccccEEeccc--ccceec-----CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEeh---
Confidence 44667788887753 122221 23456788899888853 567777654 4488999988864 233332
Q ss_pred ccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079 292 DHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 292 ~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 334 (361)
.-.+.+|.+|+.+.+-. .++.++ ..|.++++|+.+++.+..
T Consensus 327 ~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 23567799999999953 577887 678999999999998764
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.08 E-value=0.0029 Score=58.43 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=68.2
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILE 291 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~ 291 (361)
+..+.+|+.+.+.. .++.+. ...+.++.+|+.+.+.. .++.++... .+|.+|+++.+.. .++.++
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~-----~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~--- 358 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIG-----EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG--- 358 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEEC-----TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---
T ss_pred cccccccccccccc--ccceec-----hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh---
Confidence 44678888888854 344333 24567889999999854 477776654 5589999998864 233333
Q ss_pred ccccCCCCCccEEEEecCCCCCccccccCCCCCCCeE
Q 018079 292 DHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKL 328 (361)
Q Consensus 292 ~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L 328 (361)
.-.+.+|++|+.+++.. .++.+...+.++++|+.+
T Consensus 359 ~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred HHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 23677799999999964 355555567777777765
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.02 E-value=0.00027 Score=58.18 Aligned_cols=126 Identities=17% Similarity=0.073 Sum_probs=82.0
Q ss_pred CCChHHHHHhhcCCCCCCceEEEEec-CCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecc
Q 018079 59 VSHVDEAERLQLSNKKNLLRLHLQFG-GKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIF 137 (361)
Q Consensus 59 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 137 (361)
..+..+.+...+...++|++|+++.| ...+ +-...+.+.+...++|++|++++
T Consensus 21 ~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~--------------------------~g~~~l~~~L~~~~~L~~L~Ls~ 74 (185)
T 1io0_A 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPV--------------------------PTLKACAEALKTNTYVKKFSIVG 74 (185)
T ss_dssp CCCHHHHHHHHHTTCTTCCEEECTTCTTCCH--------------------------HHHHHHHHHHTTCCSCCEEECTT
T ss_pred ccHHHHHHHHHHhcCCCCCEEEecCCCCCCH--------------------------HHHHHHHHHHHhCCCcCEEECcC
Confidence 34556777778899999999999987 5432 11445677788889999999999
Q ss_pred cCCCC-----CchhhhcCccCCeeeecCCCCCCC-----CC-CCCCCc-cceEec--cccccceeecccccccCCCCCCC
Q 018079 138 YGGNI-----FPKWLTSLANLRELNLSLCFNCEH-----LP-QLGKLP-LEKLQL--KNLKSVKRVGNEFLGIEESSEDG 203 (361)
Q Consensus 138 ~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~-----l~-~l~~l~-L~~L~l--~~~~~l~~l~~~~~~~~~~~~~~ 203 (361)
|.... +...+...++|+.|++++| .+++ +. .+...+ |++|++ ++ ..+..-........
T Consensus 75 n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~------ 146 (185)
T 1io0_A 75 TRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANM------ 146 (185)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHH------
T ss_pred CCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHH------
Confidence 87543 3334456678999999987 4442 11 144556 889999 54 33443221111110
Q ss_pred CCCCCCCCcccCCCCccEEEEcCC
Q 018079 204 PSSSSSSPSVIAFPKLKSLEIDGM 227 (361)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~L~~~ 227 (361)
+...++|++|+++++
T Consensus 147 ---------L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 147 ---------LEKNTTLLKFGYHFT 161 (185)
T ss_dssp ---------HHHCSSCCEEECCCS
T ss_pred ---------HHhCCCcCEEeccCC
Confidence 335578888888775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.41 E-value=0.0028 Score=52.02 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=75.0
Q ss_pred ccCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCc-----cchhccCCCCcceEeeccCCCccc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKA-----LPDYLLQMTVLQNLRIFFCENMEE 286 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~ 286 (361)
+...++|++|+++++..+.+... .+ ...+...++|++|++++|. +.+ +...+...++|++|++++| .+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l--~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKAC--AEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHH--HHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHH--HHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 44678999999998734543221 11 1244567899999999864 542 3334455789999999986 3332
Q ss_pred -----CCcccccccCCCCCccEEEE--ecCCCCCc-----cccccCCCCCCCeEEEeCCc
Q 018079 287 -----LPILEDHRTTDIPRLSSLRI--GYCPKLKV-----LPDCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 287 -----lp~L~~L~l~~l~~L~~L~l--~~c~~l~~-----l~~~l~~l~~L~~L~l~~c~ 334 (361)
+.. .+...++|++|++ .++ .+.. +...+...++|++|++++|.
T Consensus 108 ~g~~~l~~----~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVE----ALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHH----GGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHH----HHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 111 2344678999999 554 5544 44566777899999999885
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.27 E-value=0.0023 Score=55.80 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=52.6
Q ss_pred ccCCCccEEEEecCCCCCccc---hhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc----
Q 018079 244 SIMPRLSSLEVSSCNKLKALP---DYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP---- 316 (361)
Q Consensus 244 ~~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~---- 316 (361)
..+++|+.|++++ +.+..++ ..+..+++|+.|++++ +.++.+..+..+ ..+ +|++|++.+++.-..+|
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l--~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKI--KGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGG--TTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhc--ccC-CcceEEccCCcCccccCcchh
Confidence 3688899998887 4566543 4556688888888887 455554433222 223 78888888866544343
Q ss_pred ---cccCCCCCCCeEEE
Q 018079 317 ---DCLLRTTTLQKLTI 330 (361)
Q Consensus 317 ---~~l~~l~~L~~L~l 330 (361)
..+..+|+|+.|+-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 23566788877653
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.07 E-value=0.17 Score=46.36 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=54.5
Q ss_pred ccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-ccc
Q 018079 242 NISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCL 319 (361)
Q Consensus 242 ~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l 319 (361)
.+..+.+|+.+.+.+ .+..+... +.++++|+.+.+.. .++.++ .-.+.+|.+|+.+.+-. .++.+. ..|
T Consensus 260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~---~~aF~~c~~L~~i~lp~--~v~~I~~~aF 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELP---ESVFAGCISLKSIDIPE--GITQILDDAF 330 (394)
T ss_dssp TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEEC---TTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred eeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccC---ceeecCCCCcCEEEeCC--cccEehHhHh
Confidence 455677777777743 33455443 34477888877753 333333 23566789999999854 577787 578
Q ss_pred CCCCCCCeEEEe
Q 018079 320 LRTTTLQKLTIW 331 (361)
Q Consensus 320 ~~l~~L~~L~l~ 331 (361)
..+.+|+.+.+.
T Consensus 331 ~~C~~L~~i~ip 342 (394)
T 4gt6_A 331 AGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEEEC
T ss_pred hCCCCCCEEEEC
Confidence 899999999985
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.35 E-value=0.0035 Score=54.56 Aligned_cols=68 Identities=21% Similarity=0.092 Sum_probs=40.0
Q ss_pred CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcC
Q 018079 71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSL 150 (361)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l 150 (361)
.++++|+.|+++.|.... ...+...+..+++|++|++++|....+. .+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~----------------------------l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l 217 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR----------------------------LDDMSSIVQKAPNLKILNLSGNELKSER-ELDKI 217 (267)
T ss_dssp HHCTTCCEEECTTSCCCC----------------------------CGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGG
T ss_pred hhCCCCCEEECCCCCCCC----------------------------CccchhHHhhCCCCCEEECCCCccCCch-hhhhc
Confidence 457778888888776543 2222233345677777777777665442 23333
Q ss_pred c--cCCeeeecCCCCCCCC
Q 018079 151 A--NLRELNLSLCFNCEHL 167 (361)
Q Consensus 151 ~--~L~~L~l~~~~~~~~l 167 (361)
. +|+.|++.+++-...+
T Consensus 218 ~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp TTSCCSEEECTTSTTGGGC
T ss_pred ccCCcceEEccCCcCcccc
Confidence 3 7777777776543333
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.08 E-value=0.66 Score=42.02 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccccc
Q 018079 215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDH 293 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L 293 (361)
++.+|+.+.+.. .++.+.. ..+..+.+|+.+.+.. .++.++... ..+++|+.+.+.+. .++.++ .-
T Consensus 238 ~~~~L~~i~lp~--~v~~I~~-----~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~---~~ 304 (379)
T 4h09_A 238 GMKALDEIAIPK--NVTSIGS-----FLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLE---PR 304 (379)
T ss_dssp TCSSCCEEEECT--TCCEECT-----TTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEEC---TT
T ss_pred CCccceEEEcCC--CccEeCc-----cccceeehhccccccc--cceecccccccccccccccccccc-ccceeh---hh
Confidence 456666666643 2222221 2344566666666643 355555433 34666766666541 222222 12
Q ss_pred ccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEe
Q 018079 294 RTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIW 331 (361)
Q Consensus 294 ~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~ 331 (361)
.+.+|.+|+.+.+-. .++.++ ..|.++.+|+.+.+.
T Consensus 305 aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 305 VFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred hhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 344566666666632 355555 445666666666653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.32 E-value=0.83 Score=41.33 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=42.2
Q ss_pred ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCccc
Q 018079 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILE 291 (361)
Q Consensus 213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~ 291 (361)
+..+.+|+.+.+.. ++..+.. ..+.++++|+.+.+.+ ..++.++.. +.+|.+|+++.+.. .++.++
T Consensus 259 F~~~~~l~~i~l~~--~i~~i~~-----~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~--- 325 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTVPY-----LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQ--- 325 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEECT-----TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEEC---
T ss_pred cceeehhccccccc--cceeccc-----cccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEH---
Confidence 33556677766643 2332221 3445677777777754 245556544 34467777776642 222222
Q ss_pred ccccCCCCCccEEEE
Q 018079 292 DHRTTDIPRLSSLRI 306 (361)
Q Consensus 292 ~L~l~~l~~L~~L~l 306 (361)
.-.+.+|++|+.+.+
T Consensus 326 ~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 326 VYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTTCTTCCCCCC
T ss_pred HHHhhCCCCCCEEEE
Confidence 123445666666655
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.32 E-value=0.44 Score=36.18 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=19.0
Q ss_pred CccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079 300 RLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP 334 (361)
Q Consensus 300 ~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~ 334 (361)
+|+.|++++ ++++.++ ..+..+++|+.|++.++|
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455555555 4555555 334556666666666554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.27 E-value=1.4 Score=33.32 Aligned_cols=7 Identities=14% Similarity=-0.073 Sum_probs=3.6
Q ss_pred ccceecc
Q 018079 24 SLRRLDK 30 (361)
Q Consensus 24 ~L~~L~l 30 (361)
+|++|++
T Consensus 32 ~l~~L~L 38 (130)
T 3rfe_A 32 DTTELVL 38 (130)
T ss_dssp TCSEEEC
T ss_pred CCCEEEC
Confidence 3555555
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.04 E-value=2.9 Score=34.15 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCCChHHHHHhhcCCCCCCceEEEEec-CCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEec
Q 018079 58 NVSHVDEAERLQLSNKKNLLRLHLQFG-GKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWII 136 (361)
Q Consensus 58 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 136 (361)
+..+..+.+...+.+-+.|++|+++.+ ...+ +-...+.+++..-..|+.|+++
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd--------------------------~ga~~la~aL~~N~~L~~L~L~ 78 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSK--------------------------ERIRSLIEAACNSKHIEKFSLA 78 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCH--------------------------HHHHHHHHHHTTCSCCCEEECT
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCH--------------------------HHHHHHHHHHhhCCCcCEEEcc
Confidence 445566677777788889999999764 4322 0144567888888899999999
Q ss_pred ccCCCC-----CchhhhcCccCCeeeecCC
Q 018079 137 FYGGNI-----FPKWLTSLANLRELNLSLC 161 (361)
Q Consensus 137 ~~~~~~-----~p~~~~~l~~L~~L~l~~~ 161 (361)
+|.... +...+..=+.|+.|+++++
T Consensus 79 ~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 79 NTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 887532 2333344567889998886
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=72.74 E-value=3.8 Score=33.45 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=64.6
Q ss_pred CCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCC-----ccchhccCCCCcceEeeccCCCcccCC
Q 018079 215 AFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLK-----ALPDYLLQMTVLQNLRIFFCENMEELP 288 (361)
Q Consensus 215 ~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp 288 (361)
.-+.|+.|++.++..+.+-.. .+ -..+..-+.|+.|++++| .+. .+...+..-++|++|+++++ .|+.-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~l--a~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSL--IEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHH--HHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHH--HHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 567899999986534432211 00 123445567999999886 343 22333444678999999874 332100
Q ss_pred --cccccccCCCCCccEEEEecCC--CCCc-----cccccCCCCCCCeEEEeCC
Q 018079 289 --ILEDHRTTDIPRLSSLRIGYCP--KLKV-----LPDCLLRTTTLQKLTIWGC 333 (361)
Q Consensus 289 --~L~~L~l~~l~~L~~L~l~~c~--~l~~-----l~~~l~~l~~L~~L~l~~c 333 (361)
.+-+ .+..-+.|++|+++++. .+.. +...+..=++|+.|+++.+
T Consensus 115 a~ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 115 LARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 0000 11223568899998653 3332 4455666678888888654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.21 E-value=66 Score=22.59 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=23.8
Q ss_pred CCccchh-ccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEec
Q 018079 260 LKALPDY-LLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGY 308 (361)
Q Consensus 260 l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~ 308 (361)
++.+... +.+|.+|+++.+-. .++ .+..-.+.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~---~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIG---LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSS---CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chh---eEcHHHHhccCCccEEEEcC
Confidence 3444433 34477777776653 122 22222555677788777765
Done!