Query 018080
Match_columns 361
No_of_seqs 141 out of 170
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03180 reversibly glycosylat 100.0 1E-115 2E-120 846.5 27.1 345 5-349 2-346 (346)
2 PF03214 RGP: Reversibly glyco 100.0 9E-109 2E-113 796.5 24.4 340 10-350 4-348 (348)
3 PF03385 DUF288: Protein of un 100.0 7.6E-31 1.7E-35 256.6 10.3 108 237-348 1-110 (390)
4 PF00535 Glycos_transf_2: Glyc 98.6 2.3E-08 5.1E-13 83.8 1.6 94 17-123 1-105 (169)
5 cd06433 GT_2_WfgS_like WfgS an 98.4 1.5E-07 3.3E-12 82.0 2.8 83 17-112 1-91 (202)
6 cd02510 pp-GalNAc-T pp-GalNAc- 98.3 3.2E-07 6.9E-12 88.0 3.1 99 17-124 1-111 (299)
7 cd06421 CESA_CelA_like CESA_Ce 98.3 4E-07 8.8E-12 82.2 3.6 86 15-113 2-101 (234)
8 cd06427 CESA_like_2 CESA_like_ 98.3 3.8E-07 8.3E-12 84.3 3.5 89 15-116 2-104 (241)
9 cd06442 DPM1_like DPM1_like re 98.3 6.3E-07 1.4E-11 80.6 4.6 82 18-112 1-94 (224)
10 PRK10073 putative glycosyl tra 98.3 1.1E-06 2.5E-11 86.5 6.3 85 15-112 7-101 (328)
11 cd04196 GT_2_like_d Subfamily 98.3 6.2E-07 1.3E-11 79.6 3.6 83 17-112 1-95 (214)
12 cd04195 GT2_AmsE_like GT2_AmsE 98.2 5.9E-07 1.3E-11 79.6 3.1 85 17-113 1-97 (201)
13 cd06434 GT2_HAS Hyaluronan syn 98.2 7.2E-07 1.6E-11 81.0 3.3 89 15-116 1-97 (235)
14 COG0463 WcaA Glycosyltransfera 98.2 2.5E-06 5.4E-11 70.2 5.8 85 14-112 3-98 (291)
15 cd02522 GT_2_like_a GT_2_like_ 98.2 1.8E-06 3.8E-11 77.5 5.1 83 16-112 1-88 (221)
16 PRK10018 putative glycosyl tra 98.2 1.1E-06 2.5E-11 85.0 3.9 87 15-112 6-101 (279)
17 PLN02726 dolichyl-phosphate be 98.1 1.4E-06 3.1E-11 80.9 3.4 86 14-112 9-109 (243)
18 cd06420 GT2_Chondriotin_Pol_N 98.1 1.7E-06 3.7E-11 75.3 3.7 89 18-126 1-102 (182)
19 cd02525 Succinoglycan_BP_ExoA 98.1 2.1E-06 4.6E-11 77.9 4.2 84 16-112 2-97 (249)
20 PF13641 Glyco_tranf_2_3: Glyc 98.1 4.5E-06 9.8E-11 75.6 6.3 83 16-111 3-101 (228)
21 cd04184 GT2_RfbC_Mx_like Myxoc 98.1 1.7E-06 3.7E-11 76.6 3.4 85 15-112 2-99 (202)
22 cd06423 CESA_like CESA_like is 98.1 3.1E-06 6.6E-11 70.6 4.7 82 18-112 1-94 (180)
23 cd04192 GT_2_like_e Subfamily 98.1 1.4E-06 3.1E-11 78.1 2.5 85 18-112 1-98 (229)
24 cd06437 CESA_CaSu_A2 Cellulose 98.1 4E-06 8.7E-11 76.7 5.5 88 15-113 2-104 (232)
25 cd02520 Glucosylceramide_synth 98.1 3.3E-06 7.1E-11 75.7 4.0 85 15-112 2-102 (196)
26 PRK10063 putative glycosyl tra 98.1 4.5E-06 9.8E-11 79.0 5.1 84 15-111 2-97 (248)
27 cd06913 beta3GnTL1_like Beta 1 98.1 2.5E-06 5.4E-11 77.4 3.2 86 18-112 1-100 (219)
28 cd02511 Beta4Glucosyltransfera 98.0 2.3E-06 5E-11 79.1 2.0 84 15-112 1-87 (229)
29 cd06439 CESA_like_1 CESA_like_ 98.0 1.2E-05 2.7E-10 73.9 6.7 87 13-112 28-125 (251)
30 TIGR03469 HonB hopene-associat 98.0 6.3E-06 1.4E-10 82.7 4.9 90 13-115 39-152 (384)
31 cd04179 DPM_DPG-synthase_like 98.0 6.9E-06 1.5E-10 71.5 4.4 82 18-112 1-95 (185)
32 cd04188 DPG_synthase DPG_synth 98.0 7.2E-06 1.6E-10 73.9 4.1 82 18-112 1-98 (211)
33 PRK14583 hmsR N-glycosyltransf 97.9 1.3E-05 2.8E-10 81.9 5.9 85 15-112 76-171 (444)
34 PRK11204 N-glycosyltransferase 97.9 8.7E-06 1.9E-10 81.7 4.3 85 15-112 55-150 (420)
35 cd06435 CESA_NdvC_like NdvC_li 97.9 1.2E-05 2.5E-10 73.4 4.8 84 17-112 1-100 (236)
36 cd04186 GT_2_like_c Subfamily 97.9 1.8E-05 3.9E-10 66.9 5.4 81 18-111 1-89 (166)
37 cd04187 DPM1_like_bac Bacteria 97.9 1.4E-05 3E-10 70.1 4.2 82 18-112 1-96 (181)
38 PRK10714 undecaprenyl phosphat 97.9 1E-05 2.2E-10 79.8 3.5 87 13-112 5-106 (325)
39 cd04185 GT_2_like_b Subfamily 97.8 2.1E-05 4.6E-10 70.0 4.9 81 18-111 1-94 (202)
40 PTZ00260 dolichyl-phosphate be 97.8 1.7E-05 3.7E-10 78.5 4.3 87 13-112 69-178 (333)
41 TIGR03111 glyc2_xrt_Gpos1 puta 97.8 1.5E-05 3.4E-10 81.4 3.7 88 15-111 50-146 (439)
42 PRK13915 putative glucosyl-3-p 97.7 2.5E-05 5.4E-10 76.6 3.9 86 13-111 30-131 (306)
43 cd06438 EpsO_like EpsO protein 97.7 1.8E-05 3.9E-10 70.0 2.0 81 18-112 1-97 (183)
44 cd06436 GlcNAc-1-P_transferase 97.7 4.1E-05 8.9E-10 68.7 4.1 82 18-112 1-105 (191)
45 PF10111 Glyco_tranf_2_2: Glyc 97.7 1.4E-05 3.1E-10 76.7 1.2 90 17-126 1-111 (281)
46 cd02526 GT2_RfbF_like RfbF is 97.7 1.4E-05 2.9E-10 72.7 0.7 82 18-113 1-92 (237)
47 TIGR03472 HpnI hopanoid biosyn 97.6 7.2E-05 1.6E-09 74.7 5.3 88 15-112 42-142 (373)
48 TIGR03030 CelA cellulose synth 97.2 0.00054 1.2E-08 74.5 5.8 98 15-112 132-244 (713)
49 PRK11498 bcsA cellulose syntha 97.1 0.00029 6.2E-09 78.1 3.4 85 15-115 261-358 (852)
50 cd04190 Chitin_synth_C C-termi 97.0 0.00067 1.4E-08 63.5 3.7 73 18-113 1-90 (244)
51 KOG2977 Glycosyltransferase [G 96.7 0.00067 1.5E-08 66.3 1.8 86 15-108 68-169 (323)
52 cd00761 Glyco_tranf_GTA_type G 96.6 0.0029 6.4E-08 51.2 4.4 82 18-112 1-93 (156)
53 cd02514 GT13_GLCNAC-TI GT13_GL 96.5 0.0029 6.2E-08 63.4 4.8 33 16-48 2-41 (334)
54 cd04191 Glucan_BSP_ModH Glucan 96.4 0.0021 4.5E-08 61.5 2.9 61 205-270 168-233 (254)
55 COG1215 Glycosyltransferases, 96.3 0.004 8.6E-08 62.2 4.6 86 14-112 54-153 (439)
56 TIGR01556 rhamnosyltran L-rham 96.0 0.0012 2.6E-08 62.5 -1.1 76 22-112 2-89 (281)
57 COG1216 Predicted glycosyltran 95.4 0.028 6E-07 54.6 5.8 96 14-129 3-110 (305)
58 PRK14716 bacteriophage N4 adso 94.8 0.036 7.8E-07 58.4 5.0 87 13-112 65-174 (504)
59 PRK05454 glucosyltransferase M 94.2 0.063 1.4E-06 58.7 5.2 93 13-111 123-235 (691)
60 KOG2978 Dolichol-phosphate man 92.1 0.27 5.9E-06 46.1 5.3 88 14-111 3-103 (238)
61 KOG1476 Beta-1,3-glucuronyltra 91.6 0.25 5.4E-06 49.2 4.7 96 13-128 86-205 (330)
62 PLN02458 transferase, transfer 89.2 0.28 6E-06 49.2 2.7 88 16-123 114-222 (346)
63 cd00218 GlcAT-I Beta1,3-glucur 89.1 0.16 3.4E-06 48.4 0.8 92 16-127 3-118 (223)
64 PRK11234 nfrB bacteriophage N4 87.9 0.63 1.4E-05 51.3 4.7 86 14-112 63-171 (727)
65 KOG3738 Predicted polypeptide 79.8 1.6 3.4E-05 45.3 3.1 87 16-119 126-227 (559)
66 PRK15489 nfrB bacteriophage N4 77.9 3.5 7.5E-05 45.5 5.3 87 14-113 71-180 (703)
67 PF13733 Glyco_transf_7N: N-te 68.3 3.3 7.1E-05 36.7 1.8 77 6-112 39-127 (136)
68 PF04583 Baculo_p74: Baculovir 67.1 2.6 5.6E-05 40.8 1.0 19 140-158 123-141 (249)
69 COG4092 Predicted glycosyltran 66.9 6 0.00013 39.1 3.5 43 80-129 73-120 (346)
70 KOG3737 Predicted polypeptide 63.9 4.2 9.2E-05 42.1 1.9 102 16-129 157-273 (603)
71 KOG3736 Polypeptide N-acetylga 59.3 3.1 6.7E-05 44.8 0.0 107 15-131 143-261 (578)
72 cd00899 b4GalT Beta-4-Galactos 55.0 14 0.00031 35.1 3.7 68 15-112 3-82 (219)
73 PRK14503 mannosyl-3-phosphogly 52.4 12 0.00027 38.2 3.0 93 14-111 51-175 (393)
74 TIGR02460 osmo_MPGsynth mannos 52.2 12 0.00027 38.0 2.9 93 14-111 50-174 (381)
75 PF09488 Osmo_MPGsynth: Mannos 49.6 11 0.00025 38.4 2.2 92 14-111 50-174 (381)
76 PF03360 Glyco_transf_43: Glyc 46.3 14 0.00029 35.0 2.1 35 82-123 56-97 (207)
77 PF01762 Galactosyl_T: Galacto 37.8 43 0.00093 30.2 3.9 47 201-250 140-187 (195)
78 PRK14502 bifunctional mannosyl 30.1 40 0.00086 37.4 2.7 93 14-111 55-179 (694)
79 PF11341 DUF3143: Protein of u 28.5 12 0.00026 29.0 -1.1 22 148-169 41-63 (63)
80 KOG3916 UDP-Gal:glucosylcerami 27.1 91 0.002 31.9 4.5 77 6-112 143-231 (372)
81 KOG2492 CDK5 activator-binding 25.6 53 0.0011 34.5 2.6 60 236-296 395-466 (552)
82 PF09039 HTH_Tnp_Mu_2: Mu DNA 22.8 96 0.0021 26.2 3.2 50 285-339 30-79 (108)
83 PF13506 Glyco_transf_21: Glyc 22.6 33 0.00072 30.8 0.4 52 207-267 100-152 (175)
84 PF04666 Glyco_transf_54: N-Ac 22.4 68 0.0015 31.8 2.6 17 97-113 170-186 (297)
85 PF13712 Glyco_tranf_2_5: Glyc 22.2 1.2E+02 0.0025 28.4 4.0 27 85-111 43-69 (217)
86 PF03071 GNT-I: GNT-I family; 20.6 16 0.00035 38.2 -2.3 36 13-48 92-134 (434)
No 1
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=100.00 E-value=1.1e-115 Score=846.46 Aligned_cols=345 Identities=91% Similarity=1.544 Sum_probs=339.6
Q ss_pred CCCCCCCCCCceEEEEecccChhHHHHhhccCCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccccCCCc
Q 018080 5 STKPTPLLKDELDIVIPTIRNLDFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKD 84 (361)
Q Consensus 5 ~~~~~~~~~~~i~IVItTi~~p~~L~~~~~~l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~iP~~s 84 (361)
+..++++++++++||||||++++||++|++.|+++|+|+|+|+++++.++.|+|+++++|+++|++++++.+.++|||++
T Consensus 2 ~~~~~~~~~~evdIVi~TI~~~~fL~~~r~~l~~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~~~~Ip~~~ 81 (346)
T PLN03180 2 SVSPAPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPKASCISFKD 81 (346)
T ss_pred CCccCCCCCCcceEEEeccCchhHHHHHHHhcCcccEEEEecCCcccceeccCCCceeecCHHHHHhhhcccccccccCc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhheeeEEeceeeEeecCCccccCCCCCCcchhhhhhhcccccCCCCcccccccCCCCCCCCcccccCCCCCCCcch
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHT 164 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~~l~~~~~~~~~N~lY~~~~~~~~wPRGyPl~~~egv~~ 164 (361)
++|||||||+|+++|||+|||||+|++||.|+.+||++||+.||++|+||+|||+||+||+++++||||||||+|+||+|
T Consensus 82 ~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~~pstp~~fNtLYdp~r~g~~fvRGYPfS~R~gv~v 161 (346)
T PLN03180 82 SACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGVPT 161 (346)
T ss_pred ccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcCCCCCCceeecccccCccCCcccCCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeecccCCCCCcccccccCCCCCCCccccceeecCCCceeecccchhhhhhhccchhhhhcccCCCCCCCccchhHHH
Q 018080 165 AVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAG 244 (361)
Q Consensus 165 ~iqqGL~~~~PDvDAi~rl~~~~~~~~~f~~a~v~lp~gt~~P~nsqNtaF~r~a~~pa~~~~~m~~~~~~~R~~DIWrg 244 (361)
+||||||+|+|||||||||+++.++|++|++++||+|+|||+||||||||||||++|||||++||++|++++|++|||+|
T Consensus 162 aiS~GLWln~PD~DA~t~l~k~~e~~t~yvdavvtip~gt~~pv~~~NlAF~ReligPA~y~g~m~~g~~i~R~dDiWsG 241 (346)
T PLN03180 162 AVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAG 241 (346)
T ss_pred EEecccccCCCcccchhhhccchhccceecccEEeccCCCEeecccchhhhhhhhcchhheecccCCCCcccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEecCeeeeccCCCCccchHHhhhhhhcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 018080 245 WCMKVICDHMGWGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSCVLPKECTTVQQCYLELAKQVKAKLSKV 324 (361)
Q Consensus 245 y~~qri~~~~G~~v~fg~P~v~~~r~h~~~~Dl~~E~~~~~~~~~li~fl~~~~~~~~~~~~~~~~~~L~~~~~~~l~~~ 324 (361)
||+|+||+|+|++|+||.|+|+|+|.||+|+||++|++|++++|+||+|||++++|+++.|+++||+|||++++++|++.
T Consensus 242 ~c~K~i~dhLG~gVktG~Pyv~h~k~~n~~~dL~~E~~Gi~l~E~i~~ff~~~~l~~~a~t~~~cy~ela~~vk~~l~~~ 321 (346)
T PLN03180 242 WCAKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSVRLPKEAVTVEDCYIELAKQVKEKLGKV 321 (346)
T ss_pred HHHHHHHHHhCcceecCCceEecCCcccHHHHHHhhccCeechHHHHHHHHhccCCcccCcHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHcCCCC
Q 018080 325 DPYFDKLAEAMVTWIEAWDELNSAG 349 (361)
Q Consensus 325 ~~~~~~~a~~m~~Wl~~l~~vg~~~ 349 (361)
++||++.+++|++||++|+++|+++
T Consensus 322 d~~f~~~a~~M~~Wi~~w~~l~~~~ 346 (346)
T PLN03180 322 DPYFTKLADAMVTWIEAWKELNSPS 346 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999863
No 2
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=100.00 E-value=8.5e-109 Score=796.52 Aligned_cols=340 Identities=69% Similarity=1.239 Sum_probs=332.1
Q ss_pred CCCCCceEEEEeccc-Ch-hHHHHhhccCCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccccCCCcccc
Q 018080 10 PLLKDELDIVIPTIR-NL-DFLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSAC 87 (361)
Q Consensus 10 ~~~~~~i~IVItTi~-~p-~~L~~~~~~l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~iP~~s~ar 87 (361)
+|++++++|||+|++ +. +||+.||+.|+++|+|||.|+++.++++.|+||+.++|+++++++++|.. .+|||++++|
T Consensus 4 ~~~~~~~divi~~~~~~l~~~~~~wr~~~~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~-~~i~~~~~a~ 82 (348)
T PF03214_consen 4 EILDDEVDIVIPALRPNLTDFLEEWRPFFSPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAK-TLIPFKGDAC 82 (348)
T ss_pred ccccCcccEEeecccccHHHHHHHHHHhhcceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCc-ccccccccch
Confidence 789999999999999 88 99999999999999999999999999999999999999999999999987 8899999999
Q ss_pred hhheeeEEeceeeEeecCCccccCCCCCCcchhhhhhhcccccCCCCcccccccCCCCCCCCcccccCCCCCCCcchhee
Q 018080 88 RCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVHTAVS 167 (361)
Q Consensus 88 RN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~~l~~~~~~~~~N~lY~~~~~~~~wPRGyPl~~~egv~~~iq 167 (361)
||||||+|+++|||+|||||+|++|+.|.+++.+.||+.++..||||.|||+||+||+++++||||||||+||||+|++|
T Consensus 83 R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~st~~~fNtLyd~~~e~~~f~RGyPfS~Regv~~~~s 162 (348)
T PF03214_consen 83 RNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTPSTPFFFNTLYDPYREGADFPRGYPFSLREGVDTAAS 162 (348)
T ss_pred hhhHhhhcccceEEEEccccccccCCccceehhhhccceeeeccCchhhhhhhcccccccCcccCCCCcccccCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCCcccccccCCCCCCCccccceeecCCCceeecccchhhhhhhccchhhhhcccCCCCCCCccc---hhHHH
Q 018080 168 HGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYD---DMWAG 244 (361)
Q Consensus 168 qGL~~~~PDvDAi~rl~~~~~~~~~f~~a~v~lp~gt~~P~nsqNtaF~r~a~~pa~~~~~m~~~~~~~R~~---DIWrg 244 (361)
||||+|+|||||||||+++.+++++|+++++|+|+|||+|||||||||+||++||+||+++|+.++.++|++ |||+|
T Consensus 163 ~GLWln~PD~DA~t~l~~~~~r~~~~~d~~~~~p~gt~~pv~s~NlAf~Relip~~~~~~~~~~~~~~~R~d~~gDIWsG 242 (348)
T PF03214_consen 163 AGLWLNVPDLDAPTQLVKPTERNTRYVDAVLTIPRGTYLPVCSMNLAFDRELIPPAYYFPMMGNGWGIGRFDRFGDIWSG 242 (348)
T ss_pred cccccCCcccchhhhhccchhccccccCceEEecCCCEeecccchhhhhhhhcChheecccccCCCcccccccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999998888877788888888888 99999
Q ss_pred HHHHHHHHHhCCeEEEecCeeeeccCCCCccchHHhhhhhhcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 018080 245 WCMKVICDHMGWGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSCVLPKECTTVQQCYLELAKQVKAKLSKV 324 (361)
Q Consensus 245 y~~qri~~~~G~~v~fg~P~v~~~r~h~~~~Dl~~E~~~~~~~~~li~fl~~~~~~~~~~~~~~~~~~L~~~~~~~l~~~ 324 (361)
||+|+||+|+|++|+||.|+|+|+++|++|+||++|++|++++|+|++|||++++|+++.++++||+||+++++++|++.
T Consensus 243 ~f~k~~~d~Lg~~V~~G~P~v~H~~a~~~~~dL~~E~~Gi~l~E~i~~f~q~v~Ls~~A~t~~dcy~ELA~~VkekLg~~ 322 (348)
T PF03214_consen 243 YFLKVICDHLGHGVKTGLPYVWHNKAHNAFDDLKKEVPGIELNEDILPFFQSVKLSKTAVTVEDCYRELAKQVKEKLGSV 322 (348)
T ss_pred HHHHHHHHHcCCccccCCceEEecCCCchHHHHHhhccchhhHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHcCCCCC
Q 018080 325 DPYFDKLAEAMVTWIEAWDELNSAGQ 350 (361)
Q Consensus 325 ~~~~~~~a~~m~~Wl~~l~~vg~~~~ 350 (361)
++||++.+++|++||++|+++|++++
T Consensus 323 dp~F~kvAdaMv~WI~AW~~lns~~~ 348 (348)
T PF03214_consen 323 DPYFTKVADAMVAWIKAWKELNSGSA 348 (348)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999998753
No 3
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=99.97 E-value=7.6e-31 Score=256.62 Aligned_cols=108 Identities=16% Similarity=0.240 Sum_probs=101.4
Q ss_pred ccchhHHHHHHHHHHHHhCCeEEEecCeeeeccC-CCCccchHHhhhhhhcchhhhhhhhhccCCCC-CCCHHHHHHHHH
Q 018080 237 RYDDMWAGWCMKVICDHMGWGVKTGLPYIWHSKA-SNPFVNLKKEYKGIYWQEELIPFFQSCVLPKE-CTTVQQCYLELA 314 (361)
Q Consensus 237 R~~DIWrgy~~qri~~~~G~~v~fg~P~v~~~r~-h~~~~Dl~~E~~~~~~~~~li~fl~~~~~~~~-~~~~~~~~~~L~ 314 (361)
|++|||||||+|||||++|++|+|+||+|+|.|| |+|++||++|+++|+.+|+||+||++|+|++. +.++++|+++|+
T Consensus 1 RvTDIWRSY~aQRLLW~~G~~VsF~PpnV~Q~RNaHdYLkDF~DEk~LY~~sG~LV~FL~~W~~~~~n~~~L~~~Il~L~ 80 (390)
T PF03385_consen 1 RVTDIWRSYWAQRLLWLSGGTVSFVPPNVVQFRNAHDYLKDFKDEKDLYEDSGRLVEFLHEWRCSKGNSSTLFECILDLY 80 (390)
T ss_pred CchhHHHHHHHHHHHHHcCCeEEEcCCceeecccccccccchHHHHHHHHhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Confidence 8999999999999999999999999999999999 99999999999999999999999999999753 457999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHcCCC
Q 018080 315 KQVKAKLSKVDPYFDKLAEAMVTWIEAWDELNSA 348 (361)
Q Consensus 315 ~~~~~~l~~~~~~~~~~a~~m~~Wl~~l~~vg~~ 348 (361)
++|+++ +.|..+|+++|++||+||++|||.
T Consensus 81 ~~m~e~----GfW~~~Dv~L~~AWL~DL~sVGY~ 110 (390)
T PF03385_consen 81 VAMAEE----GFWGEEDVKLMQAWLQDLKSVGYK 110 (390)
T ss_pred HHHHHc----CCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999998 455558999999999999999985
No 4
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.55 E-value=2.3e-08 Score=83.81 Aligned_cols=94 Identities=27% Similarity=0.332 Sum_probs=62.9
Q ss_pred EEEEecccCh----hHHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC--CCccc----cCCCcc
Q 018080 17 DIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASC----ISFKDS 85 (361)
Q Consensus 17 ~IVItTi~~p----~~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~--~~~~~----iP~~s~ 85 (361)
||||||||++ ++|++++++ ...+++|||+|++ ++++. +-++++.. ...++ -..+..
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s------~d~~~-------~~~~~~~~~~~~i~~i~~~~n~g~~ 67 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGS------TDETE-------EILEEYAESDPNIRYIRNPENLGFS 67 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-------SSSHH-------HHHHHHHCCSTTEEEEEHCCCSHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccc------ccccc-------ccccccccccccccccccccccccc
Confidence 7999999987 566666655 5889999999995 66654 33444332 11111 234678
Q ss_pred cchhheeeEEeceeeEeecCCccccCCCCCCcchhhhh
Q 018080 86 ACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQ 123 (361)
Q Consensus 86 arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~ 123 (361)
+.+|.|+-.|.++||+++|||+++.++++..-++++.+
T Consensus 68 ~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 68 AARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 89999999999999999999999999654444444444
No 5
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.40 E-value=1.5e-07 Score=81.96 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=57.7
Q ss_pred EEEEecccChhHH----HHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---CccccCCCcccch
Q 018080 17 DIVIPTIRNLDFL----EMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KASCISFKDSACR 88 (361)
Q Consensus 17 ~IVItTi~~p~~L----~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---~~~~iP~~s~arR 88 (361)
+|||||||+++.| ++++++ .++++||||+|++ ++.+. +.+++.... ..+.-..+....+
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s------~d~~~-------~~~~~~~~~~~~~~~~~~~g~~~a~ 67 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGS------TDGTV-------DIIKKYEDKITYWISEPDKGIYDAM 67 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCC------CccHH-------HHHHHhHhhcEEEEecCCcCHHHHH
Confidence 5899999988554 444433 5779999999996 55543 222221110 1111234567889
Q ss_pred hheeeEEeceeeEeecCCccccCC
Q 018080 89 CFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 89 N~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
|.|+-.|.++||+++|+|+.+.++
T Consensus 68 n~~~~~a~~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 68 NKGIALATGDIIGFLNSDDTLLPG 91 (202)
T ss_pred HHHHHHcCCCEEEEeCCCcccCch
Confidence 999999999999999999999984
No 6
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.31 E-value=3.2e-07 Score=87.96 Aligned_cols=99 Identities=13% Similarity=0.042 Sum_probs=63.0
Q ss_pred EEEEecccCh-hHHHH----hhccCC---CeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccc----cCCCc
Q 018080 17 DIVIPTIRNL-DFLEM----WRPFFE---PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC----ISFKD 84 (361)
Q Consensus 17 ~IVItTi~~p-~~L~~----~~~~l~---~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~----iP~~s 84 (361)
+|||||||+. +.|++ +..+.. .+|||||+|+| +..+. +.+.. ...+-.....++ -+.+-
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S------~d~t~--~~~~~-~~~~~~~~~v~vi~~~~n~G~ 71 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFS------DKPEL--KLLLE-EYYKKYLPKVKVLRLKKREGL 71 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCC------CchHH--HHHHH-HHHhhcCCcEEEEEcCCCCCH
Confidence 6999999987 55544 443322 36999999996 43332 11100 000001111222 23455
Q ss_pred ccchhheeeEEeceeeEeecCCccccCCCCCCcchhhhhh
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQH 124 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~h 124 (361)
.+.+|.|...|.++||+++|+||.+.++|+..-++.+.++
T Consensus 72 ~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~ 111 (299)
T cd02510 72 IRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAEN 111 (299)
T ss_pred HHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhC
Confidence 6789999999999999999999999997766655555543
No 7
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.31 E-value=4e-07 Score=82.24 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=55.7
Q ss_pred ceEEEEecccCh-h----HHHHhhcc-CCC--eEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---Ccccc--C
Q 018080 15 ELDIVIPTIRNL-D----FLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KASCI--S 81 (361)
Q Consensus 15 ~i~IVItTi~~p-~----~L~~~~~~-l~~--~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---~~~~i--P 81 (361)
.++||||+||+. + +|++++.+ .+. |+||||+|++ +..+. +-++++... ..... +
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s------~d~t~-------~~~~~~~~~~~~~~~~~~~~ 68 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGR------RPELR-------ALAAELGVEYGYRYLTRPDN 68 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCC------chhHH-------HHHHHhhcccCceEEEeCCC
Confidence 489999999964 4 44444433 355 9999999995 55543 222222211 00111 1
Q ss_pred CC-cccchhheeeEEeceeeEeecCCccccCCC
Q 018080 82 FK-DSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (361)
Q Consensus 82 ~~-s~arRN~GyL~A~a~yI~~~DDD~~P~~d~ 113 (361)
-. ..+..|.|+-.|.++||+++|+|+.+.+++
T Consensus 69 ~~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~ 101 (234)
T cd06421 69 RHAKAGNLNNALAHTTGDFVAILDADHVPTPDF 101 (234)
T ss_pred CCCcHHHHHHHHHhCCCCEEEEEccccCcCccH
Confidence 11 334578999888999999999999998843
No 8
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.31 E-value=3.8e-07 Score=84.34 Aligned_cols=89 Identities=8% Similarity=0.191 Sum_probs=60.0
Q ss_pred ceEEEEecccCh----hHHHHhhcc-C--CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC-C--CccccC---
Q 018080 15 ELDIVIPTIRNL----DFLEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG-P--KASCIS--- 81 (361)
Q Consensus 15 ~i~IVItTi~~p----~~L~~~~~~-l--~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~-~--~~~~iP--- 81 (361)
.++||||+||+. ++|+++..+ . ..+++|||+|+| ++.+. +-++++.. . ....++
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s------~d~t~-------~i~~~~~~~~~~~i~~~~~~~ 68 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEED------DEETI-------AAARALRLPSIFRVVVVPPSQ 68 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCC------CchHH-------HHHHHhccCCCeeEEEecCCC
Confidence 489999999988 455555443 2 248999999985 55553 22222211 0 111122
Q ss_pred -CCcccchhheeeEEeceeeEeecCCccccCCCCCC
Q 018080 82 -FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGK 116 (361)
Q Consensus 82 -~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~ 116 (361)
.+..+++|.|+..|.++||+++|+|+.+.++++.+
T Consensus 69 ~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~ 104 (241)
T cd06427 69 PRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKK 104 (241)
T ss_pred CCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHH
Confidence 34567899999999999999999999999954333
No 9
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.30 E-value=6.3e-07 Score=80.61 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=57.0
Q ss_pred EEEecccChh----HHHHhhccC--CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC--CC----ccccCCCcc
Q 018080 18 IVIPTIRNLD----FLEMWRPFF--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PK----ASCISFKDS 85 (361)
Q Consensus 18 IVItTi~~p~----~L~~~~~~l--~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~--~~----~~~iP~~s~ 85 (361)
||||+||+++ +|+++.++. ..+++|||+|+| +..+. +..+++.. .. ..--..+..
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S------~d~t~-------~~~~~~~~~~~~i~~~~~~~n~G~~ 67 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNS------PDGTA-------EIVRELAKEYPRVRLIVRPGKRGLG 67 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCC------CCChH-------HHHHHHHHhCCceEEEecCCCCChH
Confidence 7999999884 555555443 689999999996 55554 22222211 10 111334567
Q ss_pred cchhheeeEEeceeeEeecCCccccCC
Q 018080 86 ACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 86 arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.++|.|+..|.++||+++|+|+.+.++
T Consensus 68 ~a~n~g~~~a~gd~i~~lD~D~~~~~~ 94 (224)
T cd06442 68 SAYIEGFKAARGDVIVVMDADLSHPPE 94 (224)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCHH
Confidence 889999999999999999999999883
No 10
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.29 E-value=1.1e-06 Score=86.53 Aligned_cols=85 Identities=25% Similarity=0.322 Sum_probs=59.7
Q ss_pred ceEEEEecccChh----HHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC--CCccc---cCCCc
Q 018080 15 ELDIVIPTIRNLD----FLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASC---ISFKD 84 (361)
Q Consensus 15 ~i~IVItTi~~p~----~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~--~~~~~---iP~~s 84 (361)
.++||||+||..+ ||+.+..+ .+.+|+|||+|+| +..+.+ -.+++.. ....+ -.-+.
T Consensus 7 ~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgS------tD~t~~-------i~~~~~~~~~~i~vi~~~n~G~ 73 (328)
T PRK10073 7 KLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGS------TDNSVE-------IAKHYAENYPHVRLLHQANAGV 73 (328)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCC------CccHHH-------HHHHHHhhCCCEEEEECCCCCh
Confidence 5999999999884 55555444 5789999999996 544431 1122111 11111 23456
Q ss_pred ccchhheeeEEeceeeEeecCCccccCC
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.++||.|.-.|.++||+|+|+|....++
T Consensus 74 ~~arN~gl~~a~g~yi~flD~DD~~~p~ 101 (328)
T PRK10073 74 SVARNTGLAVATGKYVAFPDADDVVYPT 101 (328)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCccChh
Confidence 7789999999999999999999998883
No 11
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.27 E-value=6.2e-07 Score=79.59 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=55.3
Q ss_pred EEEEecccChh----HHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---Cccc----cCCCc
Q 018080 17 DIVIPTIRNLD----FLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KASC----ISFKD 84 (361)
Q Consensus 17 ~IVItTi~~p~----~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---~~~~----iP~~s 84 (361)
+|||||||+.+ +|+++..+ .+.+++|||+|++ +.++. +-++++... ...+ -..+.
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS------~d~t~-------~~~~~~~~~~~~~~~~~~~~~~~G~ 67 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGS------TDGTV-------EIIKEYIDKDPFIIILIRNGKNLGV 67 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCC------CCCcH-------HHHHHHHhcCCceEEEEeCCCCccH
Confidence 58999999884 44454443 3689999999996 44443 222222111 1111 12345
Q ss_pred ccchhheeeEEeceeeEeecCCccccCC
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
....|.|+..|.++||+++|+|+...++
T Consensus 68 ~~~~n~g~~~~~g~~v~~ld~Dd~~~~~ 95 (214)
T cd04196 68 ARNFESLLQAADGDYVFFCDQDDIWLPD 95 (214)
T ss_pred HHHHHHHHHhCCCCEEEEECCCcccChh
Confidence 5666788888889999999999999884
No 12
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.25 E-value=5.9e-07 Score=79.62 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=55.6
Q ss_pred EEEEecccCh------hHHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC-ccc----cCCCc
Q 018080 17 DIVIPTIRNL------DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASC----ISFKD 84 (361)
Q Consensus 17 ~IVItTi~~p------~~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~-~~~----iP~~s 84 (361)
+|||||||+. ++|+++..+ ...+++|||+|++ .++.+. +-++++.... ..+ -.-+.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~s-----s~d~t~-------~~~~~~~~~~~i~~i~~~~n~G~ 68 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGP-----VTQSLN-------EVLEEFKRKLPLKVVPLEKNRGL 68 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCC-----CchhHH-------HHHHHHHhcCCeEEEEcCccccH
Confidence 5899999863 455555443 3579999999995 233322 1122221111 111 11345
Q ss_pred ccchhheeeEEeceeeEeecCCccccCCC
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d~ 113 (361)
...+|.|+..|.++||+++|+|+.+.++.
T Consensus 69 ~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~ 97 (201)
T cd04195 69 GKALNEGLKHCTYDWVARMDTDDISLPDR 97 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCcHH
Confidence 77899999999999999999999999843
No 13
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=98.23 E-value=7.2e-07 Score=80.98 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=56.1
Q ss_pred ceEEEEecccCh-hHHHHhhcc---CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhh-CCCccc---cCCCccc
Q 018080 15 ELDIVIPTIRNL-DFLEMWRPF---FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL-GPKASC---ISFKDSA 86 (361)
Q Consensus 15 ~i~IVItTi~~p-~~L~~~~~~---l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l-~~~~~~---iP~~s~a 86 (361)
+++|||||||++ +.|.++.++ ...+++|||+|++ +.+.. +..++.. .....+ -..+...
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s------~d~~~-------~~l~~~~~~~~~~v~~~~~~g~~~ 67 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGD------DEPYL-------SILSQTVKYGGIFVITVPHPGKRR 67 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCC------ChHHH-------HHHHhhccCCcEEEEecCCCChHH
Confidence 479999999987 655554332 1278999999996 33332 1111110 000000 0123345
Q ss_pred chhheeeEEeceeeEeecCCccccCCCCCC
Q 018080 87 CRCFGYMVSKKKYIFTIDDDCFVAKDPSGK 116 (361)
Q Consensus 87 rRN~GyL~A~a~yI~~~DDD~~P~~d~~g~ 116 (361)
..|.|+..|.++||+++|+||.+.++++.+
T Consensus 68 a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 68 ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 668888888999999999999999954443
No 14
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=2.5e-06 Score=70.22 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=60.0
Q ss_pred CceEEEEecccCh----hHHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---C---ccccCC
Q 018080 14 DELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---K---ASCISF 82 (361)
Q Consensus 14 ~~i~IVItTi~~p----~~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---~---~~~iP~ 82 (361)
-+++|||||||+. .+|+++.++ ...+++|||+|+| +..+. +..++.... . ...-..
T Consensus 3 ~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs------~d~t~-------~~~~~~~~~~~~~~~~~~~~~~ 69 (291)
T COG0463 3 PKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGS------TDGTT-------EIAIEYGAKDVRVIRLINERNG 69 (291)
T ss_pred ccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCC------CCChH-------HHHHHHhhhcceEEEeecccCC
Confidence 4799999999988 455555444 3568999999996 54443 222222211 1 111236
Q ss_pred CcccchhheeeEEeceeeEeecCCccccCC
Q 018080 83 KDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 83 ~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
+-...+|.|+.++.++||.++|.|.. +++
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~d~d~~-~~~ 98 (291)
T COG0463 70 GLGAARNAGLEYARGDYIVFLDADDQ-HPP 98 (291)
T ss_pred ChHHHHHhhHHhccCCEEEEEccCCC-CCH
Confidence 67888999999999999999999999 874
No 15
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.20 E-value=1.8e-06 Score=77.53 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=57.1
Q ss_pred eEEEEecccCh----hHHHHhhccC-CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccccCCCcccchhh
Q 018080 16 LDIVIPTIRNL----DFLEMWRPFF-EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90 (361)
Q Consensus 16 i~IVItTi~~p----~~L~~~~~~l-~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~iP~~s~arRN~ 90 (361)
++||||+||++ ++|+++..+. ..++||||+|++ +.++.+ .++. ........+-+....+|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s------~d~~~~-------~~~~-~~~~~~~~~~g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGS------TDGTVA-------IARS-AGVVVISSPKGRARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCC------CccHHH-------HHhc-CCeEEEeCCcCHHHHHHH
Confidence 58999999988 4555555443 679999999985 444431 1111 111011123445677899
Q ss_pred eeeEEeceeeEeecCCccccCC
Q 018080 91 GYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 91 GyL~A~a~yI~~~DDD~~P~~d 112 (361)
|...|.++||+++|+|+.+.++
T Consensus 67 g~~~a~~~~i~~~D~D~~~~~~ 88 (221)
T cd02522 67 GAAAARGDWLLFLHADTRLPPD 88 (221)
T ss_pred HHHhccCCEEEEEcCCCCCChh
Confidence 9999999999999999999873
No 16
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.19 E-value=1.1e-06 Score=85.00 Aligned_cols=87 Identities=21% Similarity=0.306 Sum_probs=58.6
Q ss_pred ceEEEEecccChh----HHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccc----cCCCcc
Q 018080 15 ELDIVIPTIRNLD----FLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC----ISFKDS 85 (361)
Q Consensus 15 ~i~IVItTi~~p~----~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~----iP~~s~ 85 (361)
.++|||||||+.+ +|+++..+ .+.||+|||+|+| + +.+ . ..+-+++.......+ -..+.+
T Consensus 6 ~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS------~--~~~--~-~~~~~~~~~~~ri~~i~~~~n~G~~ 74 (279)
T PRK10018 6 LISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS------T--SWE--Q-LQQYVTALNDPRITYIHNDINSGAC 74 (279)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC------C--CHH--H-HHHHHHHcCCCCEEEEECCCCCCHH
Confidence 4999999999885 45554443 6889999999996 3 110 0 001111111111121 235567
Q ss_pred cchhheeeEEeceeeEeecCCccccCC
Q 018080 86 ACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 86 arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
+++|.|.-.|.++||.++|+|....++
T Consensus 75 ~a~N~gi~~a~g~~I~~lDaDD~~~p~ 101 (279)
T PRK10018 75 AVRNQAIMLAQGEYITGIDDDDEWTPN 101 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCcc
Confidence 889999999999999999999998883
No 17
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.14 E-value=1.4e-06 Score=80.88 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=57.9
Q ss_pred CceEEEEecccChhHH----HHhhcc---CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC----CCcccc--
Q 018080 14 DELDIVIPTIRNLDFL----EMWRPF---FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG----PKASCI-- 80 (361)
Q Consensus 14 ~~i~IVItTi~~p~~L----~~~~~~---l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~----~~~~~i-- 80 (361)
-+++||||+||+.+.| +.+.+. ...+++|||+|+| +..+. +-++++.. ....++
T Consensus 9 ~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS------~D~t~-------~i~~~~~~~~~~~~v~~~~~ 75 (243)
T PLN02726 9 MKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGS------PDGTQ-------DVVKQLQKVYGEDRILLRPR 75 (243)
T ss_pred ceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCC------CCCHH-------HHHHHHHHhcCCCcEEEEec
Confidence 4699999999987443 344333 3479999999996 54443 22222211 111121
Q ss_pred --CCCcccchhheeeEEeceeeEeecCCccccCC
Q 018080 81 --SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 81 --P~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
..+..+..|.|+..|.++||+++|+|+.+.++
T Consensus 76 ~~n~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~ 109 (243)
T PLN02726 76 PGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPK 109 (243)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEcCCCCCCHH
Confidence 24456778899988999999999999998874
No 18
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.14 E-value=1.7e-06 Score=75.32 Aligned_cols=89 Identities=24% Similarity=0.405 Sum_probs=58.9
Q ss_pred EEEecccChhHHHH----hhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC----CCccc----cCCCc
Q 018080 18 IVIPTIRNLDFLEM----WRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG----PKASC----ISFKD 84 (361)
Q Consensus 18 IVItTi~~p~~L~~----~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~----~~~~~----iP~~s 84 (361)
||||+||+++.|++ +.++ ...+++|||+|++ +..+. +.++.+.. ...++ -+++.
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s------~d~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIADDGS------TEETK-------ELIEEFKSQFPIPIKHVWQEDEGFRK 67 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCC------chhHH-------HHHHHHHhhcCCceEEEEcCCcchhH
Confidence 79999999955554 4433 3689999999995 33322 11222211 01111 12445
Q ss_pred ccchhheeeEEeceeeEeecCCccccCCCCCCcchhhhhhhc
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIK 126 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~ 126 (361)
.+.+|.|+-.|.++||+++|+|+.|.+ +++.+.+.
T Consensus 68 ~~~~n~g~~~a~g~~i~~lD~D~~~~~-------~~l~~~~~ 102 (182)
T cd06420 68 AKIRNKAIAAAKGDYLIFIDGDCIPHP-------DFIADHIE 102 (182)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcccCH-------HHHHHHHH
Confidence 677899999999999999999999988 56665443
No 19
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.13 E-value=2.1e-06 Score=77.95 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=55.6
Q ss_pred eEEEEecccChhH----HHHhhcc-C--CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC--cccc---CCC
Q 018080 16 LDIVIPTIRNLDF----LEMWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK--ASCI---SFK 83 (361)
Q Consensus 16 i~IVItTi~~p~~----L~~~~~~-l--~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~--~~~i---P~~ 83 (361)
++|||||||+++. |+.+.++ . ..+++|||+|++ +.++. +..+.+.... .+++ ...
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s------~d~~~-------~~~~~~~~~~~~v~~i~~~~~~ 68 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGS------TDGTR-------EIVQEYAAKDPRIRLIDNPKRI 68 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCC------CccHH-------HHHHHHHhcCCeEEEEeCCCCC
Confidence 7999999998854 4444443 2 478999999995 33332 1122221111 1111 123
Q ss_pred cccchhheeeEEeceeeEeecCCccccCC
Q 018080 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 84 s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
...++|.|+-.|.++||+++|+|+.+.++
T Consensus 69 ~~~a~N~g~~~a~~d~v~~lD~D~~~~~~ 97 (249)
T cd02525 69 QSAGLNIGIRNSRGDIIIRVDAHAVYPKD 97 (249)
T ss_pred chHHHHHHHHHhCCCEEEEECCCccCCHH
Confidence 45679999999999999999999999873
No 20
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=98.13 E-value=4.5e-06 Score=75.56 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=44.0
Q ss_pred eEEEEecccChhHH----HHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHh----hCCCccccCCC---
Q 018080 16 LDIVIPTIRNLDFL----EMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRI----LGPKASCISFK--- 83 (361)
Q Consensus 16 i~IVItTi~~p~~L----~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~----l~~~~~~iP~~--- 83 (361)
|+||||++|+++.| +++..+ .++++||||+|++ +++.. +.++++ .....++++-.
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~------~~~~~-------~~~~~~~~~~~~~~v~vi~~~~~~ 69 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGS------DDETA-------EILRALAARYPRVRVRVIRRPRNP 69 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-S------SS-GC-------TTHHHHHHTTGG-GEEEEE----H
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCC------ChHHH-------HHHHHHHHHcCCCceEEeecCCCC
Confidence 89999999998444 444322 3689999999984 44433 122222 11112333221
Q ss_pred ----cccchhheeeEEeceeeEeecCCccccC
Q 018080 84 ----DSACRCFGYMVSKKKYIFTIDDDCFVAK 111 (361)
Q Consensus 84 ----s~arRN~GyL~A~a~yI~~~DDD~~P~~ 111 (361)
.....|.|.-.+.++||+++|+|+.+.+
T Consensus 70 g~~~k~~a~n~~~~~~~~d~i~~lD~D~~~~p 101 (228)
T PF13641_consen 70 GPGGKARALNEALAAARGDYILFLDDDTVLDP 101 (228)
T ss_dssp HHHHHHHHHHHHHHH---SEEEEE-SSEEE-C
T ss_pred CcchHHHHHHHHHHhcCCCEEEEECCCcEECH
Confidence 1234577777778999999999999988
No 21
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.13 E-value=1.7e-06 Score=76.59 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=56.2
Q ss_pred ceEEEEecccCh-h----HHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHH-HHHhhC--CCccc--c--C
Q 018080 15 ELDIVIPTIRNL-D----FLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRND-INRILG--PKASC--I--S 81 (361)
Q Consensus 15 ~i~IVItTi~~p-~----~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d-~e~~l~--~~~~~--i--P 81 (361)
.++||||+||+. + ||+++..+ ...+++|||+|++ +..+. +. .+.... ....+ . .
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs------~d~~~-------~~~~~~~~~~~~~~~~~~~~~~ 68 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAS------TDPEV-------KRVLKKYAAQDPRIKVVFREEN 68 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCC------CChHH-------HHHHHHHHhcCCCEEEEEcccC
Confidence 489999999987 5 55555443 4679999999995 33221 11 111110 11111 1 1
Q ss_pred CCcccchhheeeEEeceeeEeecCCccccCC
Q 018080 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 82 ~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
-+....+|.|+-.|.++||.++|+|+.+.++
T Consensus 69 ~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~ 99 (202)
T cd04184 69 GGISAATNSALELATGEFVALLDHDDELAPH 99 (202)
T ss_pred CCHHHHHHHHHHhhcCCEEEEECCCCcCChH
Confidence 2345678999999999999999999999984
No 22
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.13 E-value=3.1e-06 Score=70.63 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=56.0
Q ss_pred EEEecccChh----HHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---C----ccccCCCcc
Q 018080 18 IVIPTIRNLD----FLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---K----ASCISFKDS 85 (361)
Q Consensus 18 IVItTi~~p~----~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---~----~~~iP~~s~ 85 (361)
|||||||+++ +|+.+..+ .+.+++|||+|++ +..+. +..++.... . .+--..+..
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s------~d~t~-------~~~~~~~~~~~~~~~~~~~~~~~g~~ 67 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGS------TDDTL-------EILEELAALYIRRVLVVRDKENGGKA 67 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCC------ccchH-------HHHHHHhccccceEEEEEecccCCch
Confidence 6999999984 44555443 3689999999995 44433 222222110 0 111235567
Q ss_pred cchhheeeEEeceeeEeecCCccccCC
Q 018080 86 ACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 86 arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.++|.|+..+.++||+++|+|+.+.++
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~ 94 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPD 94 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChH
Confidence 888999998899999999999999883
No 23
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.11 E-value=1.4e-06 Score=78.08 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=52.5
Q ss_pred EEEecccChh----HHHHhhcc-CCC--eEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccccCC------Cc
Q 018080 18 IVIPTIRNLD----FLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISF------KD 84 (361)
Q Consensus 18 IVItTi~~p~----~L~~~~~~-l~~--~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~iP~------~s 84 (361)
|||||||+++ ||++++.+ .+. +++|||+|++ +..+.+ +.. ...........+++. ..
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s------~d~t~~--~~~--~~~~~~~~~v~~~~~~~~~~~g~ 70 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHS------TDGTVQ--ILE--FAAAKPNFQLKILNNSRVSISGK 70 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCC------CcChHH--HHH--HHHhCCCcceEEeeccCcccchh
Confidence 7999999884 55555443 355 9999999995 444431 110 011111111222222 12
Q ss_pred ccchhheeeEEeceeeEeecCCccccCC
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
...+|.|.-.|.++||+++|+|+.+.++
T Consensus 71 ~~a~n~g~~~~~~d~i~~~D~D~~~~~~ 98 (229)
T cd04192 71 KNALTTAIKAAKGDWIVTTDADCVVPSN 98 (229)
T ss_pred HHHHHHHHHHhcCCEEEEECCCcccCHH
Confidence 3456788877889999999999999983
No 24
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=98.10 E-value=4e-06 Score=76.69 Aligned_cols=88 Identities=14% Similarity=0.267 Sum_probs=53.2
Q ss_pred ceEEEEecccChhHHH----Hhhcc-C--CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhh--CCCcccc-----
Q 018080 15 ELDIVIPTIRNLDFLE----MWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL--GPKASCI----- 80 (361)
Q Consensus 15 ~i~IVItTi~~p~~L~----~~~~~-l--~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l--~~~~~~i----- 80 (361)
.++||||+||+.+.|. ++..+ . ..++||||+|. +..+.+ ... +.++... ......+
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s-------~D~t~~--~~~-~~~~~~~~~~~~i~~~~~~~~ 71 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDS-------TDETVR--LAR-EIVEEYAAQGVNIKHVRRADR 71 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECC-------CCcHHH--HHH-HHHHHHhhcCCceEEEECCCC
Confidence 4899999999885444 44432 2 34799999884 333331 000 0011111 1111111
Q ss_pred -CCCcccchhheeeEEeceeeEeecCCccccCCC
Q 018080 81 -SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (361)
Q Consensus 81 -P~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~ 113 (361)
++ ....+|.|+-.|.++||+++|.|+.+.+++
T Consensus 72 ~G~-k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~ 104 (232)
T cd06437 72 TGY-KAGALAEGMKVAKGEYVAIFDADFVPPPDF 104 (232)
T ss_pred CCC-chHHHHHHHHhCCCCEEEEEcCCCCCChHH
Confidence 22 234679999999999999999999999843
No 25
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=98.07 E-value=3.3e-06 Score=75.72 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=55.2
Q ss_pred ceEEEEecccCh----hHHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC----Ccccc-----
Q 018080 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP----KASCI----- 80 (361)
Q Consensus 15 ~i~IVItTi~~p----~~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~----~~~~i----- 80 (361)
.++||||+||+. ++|+++.++ .+.+++|||+|++ +.++. +-++++... ..+++
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s------~d~t~-------~~~~~~~~~~~~~~~~~~~~~~~ 68 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDE------DDPAI-------PVVRKLIAKYPNVDARLLIGGEK 68 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCC------cchHH-------HHHHHHHHHCCCCcEEEEecCCc
Confidence 389999999977 566666554 4779999999995 44443 222222111 01111
Q ss_pred -CCCc-ccchhheeeEEeceeeEeecCCccccCC
Q 018080 81 -SFKD-SACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 81 -P~~s-~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
+... ....|.|+-.|.++||+++|+|+.+.++
T Consensus 69 ~g~~~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~ 102 (196)
T cd02520 69 VGINPKVNNLIKGYEEARYDILVISDSDISVPPD 102 (196)
T ss_pred CCCCHhHHHHHHHHHhCCCCEEEEECCCceEChh
Confidence 1111 1234678888889999999999999873
No 26
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.06 E-value=4.5e-06 Score=79.05 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=56.8
Q ss_pred ceEEEEecccCh----hHHHHhhcc----CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC-Cccc---cCC
Q 018080 15 ELDIVIPTIRNL----DFLEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP-KASC---ISF 82 (361)
Q Consensus 15 ~i~IVItTi~~p----~~L~~~~~~----l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~-~~~~---iP~ 82 (361)
.++|||||||+. ++|+++.++ ...+|+|||+|+| +..+. +-++++... ...+ -..
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS------tD~t~-------~i~~~~~~~~~i~~i~~~~~ 68 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS------NDGTR-------EFLENLNGIFNLRFVSEPDN 68 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC------cccHH-------HHHHHhcccCCEEEEECCCC
Confidence 489999999987 455555432 2579999999996 44443 112222110 0111 123
Q ss_pred CcccchhheeeEEeceeeEeecCCccccC
Q 018080 83 KDSACRCFGYMVSKKKYIFTIDDDCFVAK 111 (361)
Q Consensus 83 ~s~arRN~GyL~A~a~yI~~~DDD~~P~~ 111 (361)
+.++++|.|.-.|.++||+++|.|....+
T Consensus 69 G~~~A~N~Gi~~a~g~~v~~ld~DD~~~~ 97 (248)
T PRK10063 69 GIYDAMNKGIAMAQGRFALFLNSGDIFHQ 97 (248)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCCcccCc
Confidence 56678999999999999999998777776
No 27
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.06 E-value=2.5e-06 Score=77.38 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=54.5
Q ss_pred EEEecccChh----HHHHhhcc-CC-CeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccc--c------CCC
Q 018080 18 IVIPTIRNLD----FLEMWRPF-FE-PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC--I------SFK 83 (361)
Q Consensus 18 IVItTi~~p~----~L~~~~~~-l~-~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~--i------P~~ 83 (361)
||||+||+.+ ||+++..+ .+ .+++|||+|+| +..+.. +... ..++......++ . +.+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S------~d~t~~--i~~~-~~~~~~~~~~~~~~~~~~~~~~~G 71 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDAS------TDKSAE--IIEK-WRKKLEDSGVIVLVGSHNSPSPKG 71 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCC------CccHHH--HHHH-HHHhCcccCeEEEEecccCCCCcc
Confidence 7999999884 55555443 34 69999999995 444431 1110 011111111111 1 123
Q ss_pred cccchhheeeEEeceeeEeecCCccccCC
Q 018080 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 84 s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
-...||.|...|.++||.++|+|..+.++
T Consensus 72 ~~~a~N~g~~~a~gd~i~~lD~D~~~~~~ 100 (219)
T cd06913 72 VGYAKNQAIAQSSGRYLCFLDSDDVMMPQ 100 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCChh
Confidence 45688999999999999999999998884
No 28
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=98.01 E-value=2.3e-06 Score=79.06 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=57.3
Q ss_pred ceEEEEecccChhHHHHhhccCCC--eEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC-ccccCCCcccchhhe
Q 018080 15 ELDIVIPTIRNLDFLEMWRPFFEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASCISFKDSACRCFG 91 (361)
Q Consensus 15 ~i~IVItTi~~p~~L~~~~~~l~~--~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~-~~~iP~~s~arRN~G 91 (361)
.++|||||||+.+.|+++.+++.. .++|||+|+| +..+. ++-+-.+.. .+.-..+-.+.||+|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~~eiivvD~gS------tD~t~--------~i~~~~~~~v~~~~~~g~~~~~n~~ 66 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAVDEIIVVDSGS------TDRTV--------EIAKEYGAKVYQRWWDGFGAQRNFA 66 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcccCEEEEEeCCC------CccHH--------HHHHHcCCEEEECCCCChHHHHHHH
Confidence 389999999988666555444332 3999999996 54443 111111111 111223455789999
Q ss_pred eeEEeceeeEeecCCccccCC
Q 018080 92 YMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 92 yL~A~a~yI~~~DDD~~P~~d 112 (361)
...|.++||+++|.|..+.++
T Consensus 67 ~~~a~~d~vl~lDaD~~~~~~ 87 (229)
T cd02511 67 LELATNDWVLSLDADERLTPE 87 (229)
T ss_pred HHhCCCCEEEEEeCCcCcCHH
Confidence 999999999999999998883
No 29
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.01 E-value=1.2e-05 Score=73.92 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=57.4
Q ss_pred CCceEEEEecccChh----HHHHhhcc-CCC--eEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccc----cC
Q 018080 13 KDELDIVIPTIRNLD----FLEMWRPF-FEP--YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC----IS 81 (361)
Q Consensus 13 ~~~i~IVItTi~~p~----~L~~~~~~-l~~--~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~----iP 81 (361)
.-.++||||++|+.+ +|+.+.++ .+. +++|||+|++ +..+.+ ..+++......+ -.
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s------~d~t~~-------~~~~~~~~~v~~i~~~~~ 94 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGS------TDGTAE-------IAREYADKGVKLLRFPER 94 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCC------CccHHH-------HHHHHhhCcEEEEEcCCC
Confidence 345999999999884 44554443 233 8999999995 444431 111111101111 12
Q ss_pred CCcccchhheeeEEeceeeEeecCCccccCC
Q 018080 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 82 ~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.+....+|.|+-.|.++||+++|+|+.+.++
T Consensus 95 ~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~ 125 (251)
T cd06439 95 RGKAAALNRALALATGEIVVFTDANALLDPD 125 (251)
T ss_pred CChHHHHHHHHHHcCCCEEEEEccccCcCHH
Confidence 3456678999998899999999999999873
No 30
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=97.99 E-value=6.3e-06 Score=82.66 Aligned_cols=90 Identities=13% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCceEEEEecccChh----HHHHhhcc-CC-CeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC-----Ccccc-
Q 018080 13 KDELDIVIPTIRNLD----FLEMWRPF-FE-PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP-----KASCI- 80 (361)
Q Consensus 13 ~~~i~IVItTi~~p~----~L~~~~~~-l~-~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~-----~~~~i- 80 (361)
.-.++||||++|+.+ ||+.+.++ .+ .+|+|||+|+| +..+. +-.+++... ..+++
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~S------tD~T~-------~i~~~~~~~~~~~~~i~vi~ 105 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHS------TDGTA-------DIARAAARAYGRGDRLTVVS 105 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCC------CCcHH-------HHHHHHHHhcCCCCcEEEec
Confidence 346999999999874 55555443 33 69999999996 55544 222221110 11222
Q ss_pred ----C--C-CcccchhheeeEEe-----ceeeEeecCCccccCCCCC
Q 018080 81 ----S--F-KDSACRCFGYMVSK-----KKYIFTIDDDCFVAKDPSG 115 (361)
Q Consensus 81 ----P--~-~s~arRN~GyL~A~-----a~yI~~~DDD~~P~~d~~g 115 (361)
| + +...+.|.|+..|. ++||+++|+||.+.++++.
T Consensus 106 ~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~ 152 (384)
T TIGR03469 106 GQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLA 152 (384)
T ss_pred CCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHH
Confidence 1 1 12235788998888 8999999999999985443
No 31
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=97.98 E-value=6.9e-06 Score=71.51 Aligned_cols=82 Identities=18% Similarity=0.299 Sum_probs=57.2
Q ss_pred EEEecccCh----hHHHHhhccC---CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC------ccccCCCc
Q 018080 18 IVIPTIRNL----DFLEMWRPFF---EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK------ASCISFKD 84 (361)
Q Consensus 18 IVItTi~~p----~~L~~~~~~l---~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~------~~~iP~~s 84 (361)
||||+||++ ++|+.+.++. ..+++|||+|++ +..+. +.++...... ..--+.+.
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s------~d~~~-------~~~~~~~~~~~~~~~~~~~~n~G~ 67 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGS------TDGTA-------EIARELAARVPRVRVIRLSRNFGK 67 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCC------CCChH-------HHHHHHHHhCCCeEEEEccCCCCc
Confidence 689999988 5666665554 489999999995 43333 2222211111 11123557
Q ss_pred ccchhheeeEEeceeeEeecCCccccCC
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.+.+|.|+..|.++||+++|+|+.+.++
T Consensus 68 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~ 95 (185)
T cd04179 68 GAAVRAGFKAARGDIVVTMDADLQHPPE 95 (185)
T ss_pred cHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence 8899999999999999999999999883
No 32
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=97.96 E-value=7.2e-06 Score=73.95 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=58.3
Q ss_pred EEEecccCh----hHHHHhhccC-----CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC---ccc----cC
Q 018080 18 IVIPTIRNL----DFLEMWRPFF-----EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK---ASC----IS 81 (361)
Q Consensus 18 IVItTi~~p----~~L~~~~~~l-----~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~---~~~----iP 81 (361)
||||+||+. +||+.++++. ..+++|||+|+| +..+. +.++++.... .++ -.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S------~D~t~-------~~~~~~~~~~~~~i~~i~~~~n 67 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGS------KDGTA-------EVARKLARKNPALIRVLTLPKN 67 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCC------CCchH-------HHHHHHHHhCCCcEEEEEcccC
Confidence 799999977 5666766553 589999999996 54443 2222221111 011 23
Q ss_pred CCcccchhheeeEEeceeeEeecCCccccCC
Q 018080 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 82 ~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.+..++.|.|+..|.++||+++|+|+.+.++
T Consensus 68 ~G~~~a~~~g~~~a~gd~i~~ld~D~~~~~~ 98 (211)
T cd04188 68 RGKGGAVRAGMLAARGDYILFADADLATPFE 98 (211)
T ss_pred CCcHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence 5677889999999999999999999998883
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=97.93 E-value=1.3e-05 Score=81.91 Aligned_cols=85 Identities=15% Similarity=0.307 Sum_probs=58.9
Q ss_pred ceEEEEecccCh----hHHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC--Cccc----cCCC
Q 018080 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASC----ISFK 83 (361)
Q Consensus 15 ~i~IVItTi~~p----~~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~--~~~~----iP~~ 83 (361)
.++||||+||+. ++|+++.++ .+++++|||+|++ +.++. +..+++... ...+ -+-+
T Consensus 76 ~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs------~D~t~-------~~~~~~~~~~~~v~vv~~~~n~G 142 (444)
T PRK14583 76 LVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGS------SDDTA-------QVLDALLAEDPRLRVIHLAHNQG 142 (444)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCC------CccHH-------HHHHHHHHhCCCEEEEEeCCCCC
Confidence 499999999988 455555443 4689999999995 54443 222222111 1111 1234
Q ss_pred cccchhheeeEEeceeeEeecCCccccCC
Q 018080 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 84 s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
....+|.|...|.+||++++|.|+.+.++
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d 171 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKN 171 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHH
Confidence 56677999998999999999999999983
No 34
>PRK11204 N-glycosyltransferase; Provisional
Probab=97.92 E-value=8.7e-06 Score=81.73 Aligned_cols=85 Identities=16% Similarity=0.352 Sum_probs=58.1
Q ss_pred ceEEEEecccChh----HHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC--Ccccc----CCC
Q 018080 15 ELDIVIPTIRNLD----FLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--KASCI----SFK 83 (361)
Q Consensus 15 ~i~IVItTi~~p~----~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~--~~~~i----P~~ 83 (361)
.++||||+||+.+ +++++.++ .+.+++|||+|++ ++++. +..+++... ...++ .-+
T Consensus 55 ~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s------~d~t~-------~~l~~~~~~~~~v~~i~~~~n~G 121 (420)
T PRK11204 55 GVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGS------SDNTG-------EILDRLAAQIPRLRVIHLAENQG 121 (420)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC------CccHH-------HHHHHHHHhCCcEEEEEcCCCCC
Confidence 4999999999884 45554433 4689999999996 55553 222222111 01111 133
Q ss_pred cccchhheeeEEeceeeEeecCCccccCC
Q 018080 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 84 s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.....|.|.-.|.+|||+++|+|+.+.+|
T Consensus 122 ka~aln~g~~~a~~d~i~~lDaD~~~~~d 150 (420)
T PRK11204 122 KANALNTGAAAARSEYLVCIDGDALLDPD 150 (420)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCChh
Confidence 56677899988999999999999999984
No 35
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.92 E-value=1.2e-05 Score=73.39 Aligned_cols=84 Identities=13% Similarity=0.234 Sum_probs=52.5
Q ss_pred EEEEecccCh-hHHHHh----hcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHh---hCCCccc---c-CCC
Q 018080 17 DIVIPTIRNL-DFLEMW----RPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRI---LGPKASC---I-SFK 83 (361)
Q Consensus 17 ~IVItTi~~p-~~L~~~----~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~---l~~~~~~---i-P~~ 83 (361)
+||||+||+. +.|+++ ..+ .+.++||||+|++ +..+.. +.++++ .+....+ - ..+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s------~D~t~~------~~i~~~~~~~~~~i~~i~~~~~~G 68 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNT------KDEALW------KPVEAHCAQLGERFRFFHVEPLPG 68 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCC------CchhHH------HHHHHHHHHhCCcEEEEEcCCCCC
Confidence 6999999975 555554 332 3679999999995 322210 111111 1111111 0 122
Q ss_pred -cccchhheeeEEe--ceeeEeecCCccccCC
Q 018080 84 -DSACRCFGYMVSK--KKYIFTIDDDCFVAKD 112 (361)
Q Consensus 84 -s~arRN~GyL~A~--a~yI~~~DDD~~P~~d 112 (361)
..+++|.|+-.|. ++||+++|+|+.+.++
T Consensus 69 ~~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~ 100 (236)
T cd06435 69 AKAGALNYALERTAPDAEIIAVIDADYQVEPD 100 (236)
T ss_pred CchHHHHHHHHhcCCCCCEEEEEcCCCCcCHH
Confidence 2567899998876 6999999999999984
No 36
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.90 E-value=1.8e-05 Score=66.86 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=55.5
Q ss_pred EEEecccChhHHHH----hhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC---ccccCCCcccchh
Q 018080 18 IVIPTIRNLDFLEM----WRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK---ASCISFKDSACRC 89 (361)
Q Consensus 18 IVItTi~~p~~L~~----~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~---~~~iP~~s~arRN 89 (361)
||||++|+++.|++ +..+ .+.+++|||+|++ +++.. +..++..... ..--..+....+|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s------~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAS------TDGSV-------ELLRELFPEVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCC------CchHH-------HHHHHhCCCeEEEecCCCcChHHHhh
Confidence 69999999855544 4333 2678999999996 44433 2222221101 0112356778899
Q ss_pred heeeEEeceeeEeecCCccccC
Q 018080 90 FGYMVSKKKYIFTIDDDCFVAK 111 (361)
Q Consensus 90 ~GyL~A~a~yI~~~DDD~~P~~ 111 (361)
.|.-.|.++||+++|+|+.+.+
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~ 89 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEP 89 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECc
Confidence 9999999999999999999988
No 37
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.86 E-value=1.4e-05 Score=70.12 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=54.5
Q ss_pred EEEecccChhH----HHHhhcc----CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC--C----ccccCCC
Q 018080 18 IVIPTIRNLDF----LEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--K----ASCISFK 83 (361)
Q Consensus 18 IVItTi~~p~~----L~~~~~~----l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~--~----~~~iP~~ 83 (361)
|||||||+.+. |+.++.. ...++||||+|++ +..+. +-.+.+... . .+--..+
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s------~d~t~-------~~~~~~~~~~~~i~~i~~~~n~G 67 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGS------TDRTL-------EILRELAARDPRVKVIRLSRNFG 67 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCC------CccHH-------HHHHHHHhhCCCEEEEEecCCCC
Confidence 69999998854 4444433 3578999999996 44332 111211111 0 1112356
Q ss_pred cccchhheeeEEeceeeEeecCCccccCC
Q 018080 84 DSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 84 s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
..+.+|.|...|.++||+++|+|+.+.++
T Consensus 68 ~~~a~n~g~~~a~~d~i~~~D~D~~~~~~ 96 (181)
T cd04187 68 QQAALLAGLDHARGDAVITMDADLQDPPE 96 (181)
T ss_pred cHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence 67788889999999999999999998773
No 38
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.85 E-value=1e-05 Score=79.80 Aligned_cols=87 Identities=13% Similarity=0.234 Sum_probs=59.2
Q ss_pred CCceEEEEecccChh----HHHHhhcc----CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhh---CCCc----
Q 018080 13 KDELDIVIPTIRNLD----FLEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL---GPKA---- 77 (361)
Q Consensus 13 ~~~i~IVItTi~~p~----~L~~~~~~----l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l---~~~~---- 77 (361)
..+++||||+||+.+ +++++.+. ...+++|||+|+| +..+. +.++++. +...
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS------~D~T~-------~il~~~~~~~~~~v~~i~ 71 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGS------SDNSA-------EMLVEAAQAPDSHIVAIL 71 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCC------CCcHH-------HHHHHHHhhcCCcEEEEE
Confidence 346999999999874 55544322 2579999999996 44444 2222211 1111
Q ss_pred cccCCCcccchhheeeEEeceeeEeecCCccccCC
Q 018080 78 SCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 78 ~~iP~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.--.++..++.|.|+..|.++||+++|.|+...++
T Consensus 72 ~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~ 106 (325)
T PRK10714 72 LNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPE 106 (325)
T ss_pred eCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHH
Confidence 11346667788899999999999999999998773
No 39
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.83 E-value=2.1e-05 Score=69.98 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=52.6
Q ss_pred EEEecccChh----HHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC-ccc----cCCCcccc
Q 018080 18 IVIPTIRNLD----FLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASC----ISFKDSAC 87 (361)
Q Consensus 18 IVItTi~~p~----~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~-~~~----iP~~s~ar 87 (361)
|||||||+.+ +|++++++ .+.++||||+|++ +..+. +.+++..... ..+ -+.+....
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s------~d~t~-------~~~~~~~~~~~i~~~~~~~n~g~~~~ 67 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNAS------TDGTA-------EWLTSLGDLDNIVYLRLPENLGGAGG 67 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCC------CcchH-------HHHHHhcCCCceEEEECccccchhhH
Confidence 6999999884 55555443 3578999999996 54443 3333332211 011 12334556
Q ss_pred hhheeeEE---eceeeEeecCCccccC
Q 018080 88 RCFGYMVS---KKKYIFTIDDDCFVAK 111 (361)
Q Consensus 88 RN~GyL~A---~a~yI~~~DDD~~P~~ 111 (361)
+|.|+..| .++|++++|+|+.+.+
T Consensus 68 ~n~~~~~a~~~~~d~v~~ld~D~~~~~ 94 (202)
T cd04185 68 FYEGVRRAYELGYDWIWLMDDDAIPDP 94 (202)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCcCh
Confidence 77777655 4799999999999998
No 40
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.81 E-value=1.7e-05 Score=78.52 Aligned_cols=87 Identities=23% Similarity=0.324 Sum_probs=59.2
Q ss_pred CCceEEEEecccCh----hHHHHhhccC---------CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC----
Q 018080 13 KDELDIVIPTIRNL----DFLEMWRPFF---------EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---- 75 (361)
Q Consensus 13 ~~~i~IVItTi~~p----~~L~~~~~~l---------~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---- 75 (361)
.-.++||||+||+. ++|+++.+.+ ..+++|||+|+| +..+.+ ..+++...
T Consensus 69 ~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgS------tD~T~~-------i~~~~~~~~~~~ 135 (333)
T PTZ00260 69 DVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGS------KDKTLK-------VAKDFWRQNINP 135 (333)
T ss_pred CeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCC------CCchHH-------HHHHHHHhcCCC
Confidence 34599999999987 4555544332 269999999996 555542 22222110
Q ss_pred --Cccc----cCCCcccchhheeeEEeceeeEeecCCccccCC
Q 018080 76 --KASC----ISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 76 --~~~~----iP~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
..++ ...+..++.|.|+..|.++||+++|.|+....+
T Consensus 136 ~~~i~vi~~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~ 178 (333)
T PTZ00260 136 NIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDID 178 (333)
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHH
Confidence 1122 235677888999999999999999999987774
No 41
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=97.79 E-value=1.5e-05 Score=81.38 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=55.7
Q ss_pred ceEEEEecccChh----HHHHhhcc-CC--CeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccccC--CCcc
Q 018080 15 ELDIVIPTIRNLD----FLEMWRPF-FE--PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCIS--FKDS 85 (361)
Q Consensus 15 ~i~IVItTi~~p~----~L~~~~~~-l~--~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~iP--~~s~ 85 (361)
.++||||+||+.+ +|+++..+ .+ .+++|||+|++ +.++.+ ++.. .++....-....++ -+..
T Consensus 50 ~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~S------tD~T~~--il~~-~~~~~~~v~v~~~~~~~Gka 120 (439)
T TIGR03111 50 DITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQS------TDDSFQ--VFCR-AQNEFPGLSLRYMNSDQGKA 120 (439)
T ss_pred CEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCC------ChhHHH--HHHH-HHHhCCCeEEEEeCCCCCHH
Confidence 4999999999884 45554433 23 47999999996 555531 1100 00110110111122 2345
Q ss_pred cchhheeeEEeceeeEeecCCccccC
Q 018080 86 ACRCFGYMVSKKKYIFTIDDDCFVAK 111 (361)
Q Consensus 86 arRN~GyL~A~a~yI~~~DDD~~P~~ 111 (361)
...|.|.-.|.++||+++|.|+.|.+
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~ 146 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHK 146 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcCh
Confidence 66799998899999999999999988
No 42
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.73 E-value=2.5e-05 Score=76.63 Aligned_cols=86 Identities=10% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCceEEEEecccCh----hHHHHhhccC---CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---Ccccc--
Q 018080 13 KDELDIVIPTIRNL----DFLEMWRPFF---EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KASCI-- 80 (361)
Q Consensus 13 ~~~i~IVItTi~~p----~~L~~~~~~l---~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---~~~~i-- 80 (361)
.-+++||||+||+. ++|+++++++ ..+++|||+|+| +..+.+ -.++.... ....+
T Consensus 30 ~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgS------tD~T~~-------ia~~~~~~v~~~~~~~~~ 96 (306)
T PRK13915 30 GRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGS------TDATAE-------RAAAAGARVVSREEILPE 96 (306)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCC------ccHHHH-------HHHHhcchhhcchhhhhc
Confidence 34699999999987 4566665443 257999999996 444432 11111000 00111
Q ss_pred -C--CCcccchhheeeEEeceeeEeecCCcc-ccC
Q 018080 81 -S--FKDSACRCFGYMVSKKKYIFTIDDDCF-VAK 111 (361)
Q Consensus 81 -P--~~s~arRN~GyL~A~a~yI~~~DDD~~-P~~ 111 (361)
+ .+...+.|.|+..|.++||+++|.|+. +.+
T Consensus 97 ~~~n~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p 131 (306)
T PRK13915 97 LPPRPGKGEALWRSLAATTGDIVVFVDADLINFDP 131 (306)
T ss_pred cccCCCHHHHHHHHHHhcCCCEEEEEeCccccCCH
Confidence 1 233455678888888999999999997 555
No 43
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.69 E-value=1.8e-05 Score=70.02 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=52.1
Q ss_pred EEEecccCh----hHHHHhhccC---CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCcc----ccCCCccc
Q 018080 18 IVIPTIRNL----DFLEMWRPFF---EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKAS----CISFKDSA 86 (361)
Q Consensus 18 IVItTi~~p----~~L~~~~~~l---~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~----~iP~~s~a 86 (361)
||||+||+. ++|+++.++. ..+++|||+|++ +..+.+ +-+.++.... .-..+...
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s------~D~t~~--------~~~~~~~~~~~~~~~~~~gk~~ 66 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNC------TDDTAQ--------VARAAGATVLERHDPERRGKGY 66 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCC------CchHHH--------HHHHcCCeEEEeCCCCCCCHHH
Confidence 799999987 5666665432 458999999996 544431 1111111100 11223455
Q ss_pred chhheeeEE-----eceeeEeecCCccccCC
Q 018080 87 CRCFGYMVS-----KKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 87 rRN~GyL~A-----~a~yI~~~DDD~~P~~d 112 (361)
+.|.|+..| .++||+++|.|+.+.++
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~ 97 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVDPN 97 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCChh
Confidence 678888665 38999999999999984
No 44
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=97.67 E-value=4.1e-05 Score=68.69 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=53.2
Q ss_pred EEEecccChh----HHHHhhccCCCeEEEEEeCCCCCCcccCCCCccccccCHHHHH-HhhCCCcccc-------CCCcc
Q 018080 18 IVIPTIRNLD----FLEMWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDIN-RILGPKASCI-------SFKDS 85 (361)
Q Consensus 18 IVItTi~~p~----~L~~~~~~l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e-~~l~~~~~~i-------P~~s~ 85 (361)
||||+||+.+ +|+++..+.+.+++|||+|+| ++.+.. -.+ +......+++ .-...
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S------~D~t~~-------~~~~~~~~~~v~~i~~~~~~~~~Gk~ 67 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDAS------DDDTAG-------IVRLAITDSRVHLLRRHLPNARTGKG 67 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCCCCeEEEEEECCC------CcCHHH-------HHhheecCCcEEEEeccCCcCCCCHH
Confidence 7999999884 555554434678999999996 555542 111 0001111111 12456
Q ss_pred cchhheeeEEe-----------ceeeEeecCCccccCC
Q 018080 86 ACRCFGYMVSK-----------KKYIFTIDDDCFVAKD 112 (361)
Q Consensus 86 arRN~GyL~A~-----------a~yI~~~DDD~~P~~d 112 (361)
.++|.|+-.|. .+||+++|.|+.+.++
T Consensus 68 ~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~ 105 (191)
T cd06436 68 DALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPN 105 (191)
T ss_pred HHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHh
Confidence 78888886653 3799999999999983
No 45
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=97.67 E-value=1.4e-05 Score=76.70 Aligned_cols=90 Identities=23% Similarity=0.478 Sum_probs=61.1
Q ss_pred EEEEecccCh---hHHHHh---hcc------CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---------
Q 018080 17 DIVIPTIRNL---DFLEMW---RPF------FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP--------- 75 (361)
Q Consensus 17 ~IVItTi~~p---~~L~~~---~~~------l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~--------- 75 (361)
+||||..++. ..++++ ... -.+++||||+|++ ++.++ +.+.++...
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s-------~~~~~------~~l~~~~~~~~~~~~i~~ 67 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGS-------SDEFD------EELKKLCEKNGFIRYIRH 67 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCC-------chhHH------HHHHHHHhccCceEEEEc
Confidence 5899998865 233333 221 2689999999994 22221 222322211
Q ss_pred CccccCCCcccchhheeeEEeceeeEeecCCccccCCCCCCcchhhhhhhc
Q 018080 76 KASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIK 126 (361)
Q Consensus 76 ~~~~iP~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~ 126 (361)
..+-.+|+-+.+||+|...|.++||+|+|.||+|.+ +++++.+.
T Consensus 68 ~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~-------~~i~~~~~ 111 (281)
T PF10111_consen 68 EDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSP-------DFIEKLLN 111 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCH-------HHHHHHHH
Confidence 112245888999999999999999999999999998 77776554
No 46
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.65 E-value=1.4e-05 Score=72.71 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=53.8
Q ss_pred EEEecccCh-hHHHHhhccC--CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccc----cCCCcccchhh
Q 018080 18 IVIPTIRNL-DFLEMWRPFF--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC----ISFKDSACRCF 90 (361)
Q Consensus 18 IVItTi~~p-~~L~~~~~~l--~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~----iP~~s~arRN~ 90 (361)
+||||||+. +.|+++.+++ +.+++|||+|++ +++... ..+.......+ -..+..+.+|.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s------~~~~~~--------~~~~~~~~i~~i~~~~n~G~~~a~N~ 66 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQVDKVVVVDNSS------GNDIEL--------RLRLNSEKIELIHLGENLGIAKALNI 66 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhccCCEEEEEeCCC------CccHHH--------HhhccCCcEEEEECCCceehHHhhhH
Confidence 589999977 6666654442 368999999985 433221 11110111111 12456788999
Q ss_pred eeeEEec---eeeEeecCCccccCCC
Q 018080 91 GYMVSKK---KYIFTIDDDCFVAKDP 113 (361)
Q Consensus 91 GyL~A~a---~yI~~~DDD~~P~~d~ 113 (361)
|+-.|.+ +||+++|+|+.+.+++
T Consensus 67 g~~~a~~~~~d~v~~lD~D~~~~~~~ 92 (237)
T cd02526 67 GIKAALENGADYVLLFDQDSVPPPDM 92 (237)
T ss_pred HHHHHHhCCCCEEEEECCCCCcCHhH
Confidence 9988876 9999999999999843
No 47
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.61 E-value=7.2e-05 Score=74.70 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=51.6
Q ss_pred ceEEEEecccCh----hHHHHhhcc-CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCcccc----C--C-
Q 018080 15 ELDIVIPTIRNL----DFLEMWRPF-FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----S--F- 82 (361)
Q Consensus 15 ~i~IVItTi~~p----~~L~~~~~~-l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~i----P--~- 82 (361)
.++||||++|+. +||+++..+ .+.+|||||+|++ +..+.+ +.. +-+++.......++ | .
T Consensus 42 ~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s------~D~t~~--iv~-~~~~~~p~~~i~~v~~~~~~G~~ 112 (373)
T TIGR03472 42 PVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDP------DDPALA--VVR-RLRADFPDADIDLVIDARRHGPN 112 (373)
T ss_pred CeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCC------CCcHHH--HHH-HHHHhCCCCceEEEECCCCCCCC
Confidence 499999999976 566666544 4789999999884 333321 110 00111111111111 1 1
Q ss_pred -CcccchhheeeEEeceeeEeecCCccccCC
Q 018080 83 -KDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 83 -~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
+..++.| ++-.|++|||+++|+||.+.++
T Consensus 113 ~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~ 142 (373)
T TIGR03472 113 RKVSNLIN-MLPHARHDILVIADSDISVGPD 142 (373)
T ss_pred hHHHHHHH-HHHhccCCEEEEECCCCCcChh
Confidence 1122333 3455679999999999999983
No 48
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=97.16 E-value=0.00054 Score=74.54 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=56.8
Q ss_pred ceEEEEecccCh-hHHH----Hhhcc-C--CCeEEEEEeCCCCCCcccCCCCcccccc-CHHHHHHhhCC-Ccccc--CC
Q 018080 15 ELDIVIPTIRNL-DFLE----MWRPF-F--EPYHLIIVQDGDPSKTIKVPDGFDYELY-NRNDINRILGP-KASCI--SF 82 (361)
Q Consensus 15 ~i~IVItTi~~p-~~L~----~~~~~-l--~~~~vVVV~D~~~~~~~ktPe~~~~~~~-~~~d~e~~l~~-~~~~i--P~ 82 (361)
.++|||||||++ +.++ +.... - +.++++||+|+|.-...++|+.+..+.- ...+.+++... ..+.+ +-
T Consensus 132 ~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~ 211 (713)
T TIGR03030 132 TVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPR 211 (713)
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCC
Confidence 499999999987 4444 33221 1 3689999999963333333332211110 11222222111 11111 11
Q ss_pred ---CcccchhheeeEEeceeeEeecCCccccCC
Q 018080 83 ---KDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 83 ---~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
..+...|.|+-.|.++||+++|.|+.|.++
T Consensus 212 n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd 244 (713)
T TIGR03030 212 NVHAKAGNINNALKHTDGELILIFDADHVPTRD 244 (713)
T ss_pred CCCCChHHHHHHHHhcCCCEEEEECCCCCcChh
Confidence 223446888888889999999999999984
No 49
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=97.14 E-value=0.00029 Score=78.08 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=55.3
Q ss_pred ceEEEEecccCh-hHHHH-hhcc------CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCcccc--C---
Q 018080 15 ELDIVIPTIRNL-DFLEM-WRPF------FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI--S--- 81 (361)
Q Consensus 15 ~i~IVItTi~~p-~~L~~-~~~~------l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~i--P--- 81 (361)
.++|||||||++ +.+++ +... -+.++|+||+|++ +++.. +..+-++ .+++ |
T Consensus 261 ~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS------~D~t~--------~la~~~~--v~yI~R~~n~ 324 (852)
T PRK11498 261 TVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGG------REEFR--------QFAQEVG--VKYIARPTHE 324 (852)
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCC------ChHHH--------HHHHHCC--cEEEEeCCCC
Confidence 499999999988 45443 2211 1469999999995 55432 1111111 1111 1
Q ss_pred CCcccchhheeeEEeceeeEeecCCccccCCCCC
Q 018080 82 FKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSG 115 (361)
Q Consensus 82 ~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g 115 (361)
-..+...|.|.-.|.+|||+++|.|++|.++.+.
T Consensus 325 ~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~ 358 (852)
T PRK11498 325 HAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQ 358 (852)
T ss_pred cchHHHHHHHHHhCCCCEEEEECCCCCCChHHHH
Confidence 1234566889988999999999999999984433
No 50
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=96.97 E-value=0.00067 Score=63.46 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=46.8
Q ss_pred EEEecccCh-----hHHHHhhcc-CC----------CeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCc-ccc
Q 018080 18 IVIPTIRNL-----DFLEMWRPF-FE----------PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKA-SCI 80 (361)
Q Consensus 18 IVItTi~~p-----~~L~~~~~~-l~----------~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~-~~i 80 (361)
||||+||+. ++|+.+..+ .+ .++||||+|++ +. .+ .+... +..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs------~d------------~~--~gk~~~~~~ 60 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGA------IK------------KN--RGKRDSQLW 60 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCc------cc------------cc--CcchHHHHH
Confidence 799999984 445554433 34 78999999996 21 00 11000 000
Q ss_pred CCCcccchhheeeEEeceeeEeecCCccccCCC
Q 018080 81 SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDP 113 (361)
Q Consensus 81 P~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~ 113 (361)
-....|.|+..|.++||+++|.||.+.++.
T Consensus 61 ---~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~ 90 (244)
T cd04190 61 ---FFNYFCRVLFPDDPEFILLVDADTKFDPDS 90 (244)
T ss_pred ---HHHHHHHHhhcCCCCEEEEECCCCcCCHhH
Confidence 002346677788899999999999999843
No 51
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=96.74 E-value=0.00067 Score=66.32 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=54.4
Q ss_pred ceEEEEecccCh--------hHHHHhhc-cCC----CeEEEEEeCCCCCCcccCCCCccccc-cC-HHHHHHh-hCCCcc
Q 018080 15 ELDIVIPTIRNL--------DFLEMWRP-FFE----PYHLIIVQDGDPSKTIKVPDGFDYEL-YN-RNDINRI-LGPKAS 78 (361)
Q Consensus 15 ~i~IVItTi~~p--------~~L~~~~~-~l~----~~~vVVV~D~~~~~~~ktPe~~~~~~-~~-~~d~e~~-l~~~~~ 78 (361)
.++||||+||++ +|++-+-+ ... .|++|||+|+| +-.+.++++ |+ +...+.+ .....+
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs------~d~T~~~a~k~s~K~~~d~irV~~l~~ 141 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGS------TDSTVEVALKFSRKLGDDNIRVIKLKK 141 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCC------chhHHHHHHHHHHHcCcceEEEeehhc
Confidence 589999999987 22222211 123 89999999996 555544221 22 1111111 122234
Q ss_pred ccCCCcccchhheeeEEeceeeEeecCCcc
Q 018080 79 CISFKDSACRCFGYMVSKKKYIFTIDDDCF 108 (361)
Q Consensus 79 ~iP~~s~arRN~GyL~A~a~yI~~~DDD~~ 108 (361)
-.|.+++.| -|.|.|++++|.|.|-|.-
T Consensus 142 nrgKGgAvR--~g~l~~rG~~ilfadAdGa 169 (323)
T KOG2977|consen 142 NRGKGGAVR--KGMLSSRGQKILFADADGA 169 (323)
T ss_pred cCCCCccee--hhhHhccCceEEEEcCCCC
Confidence 467777777 8999999999999998865
No 52
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.59 E-value=0.0029 Score=51.22 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=53.6
Q ss_pred EEEecccChhHH----HHhhccC-CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC------CCccccCCCccc
Q 018080 18 IVIPTIRNLDFL----EMWRPFF-EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG------PKASCISFKDSA 86 (361)
Q Consensus 18 IVItTi~~p~~L----~~~~~~l-~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~------~~~~~iP~~s~a 86 (361)
||||++++++.+ +++.++. ..++++|++|++ +++.. ....+... ...+.-+.+...
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGS------TDGTL-------EILEEYAKKDPRVIRVINEENQGLAA 67 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCC------CccHH-------HHHHHHHhcCCCeEEEEecCCCChHH
Confidence 689999988544 4444332 489999999985 44443 11221111 012223455666
Q ss_pred chhheeeEEeceeeEeecCCccccCC
Q 018080 87 CRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 87 rRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.+|.|...+..+|++++|+|+.+.++
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~ 93 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPD 93 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCcc
Confidence 77888877789999999999998883
No 53
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.54 E-value=0.0029 Score=63.35 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=25.0
Q ss_pred eEEEEecccChh----HHHHhhc---cCCCeEEEEEeCCC
Q 018080 16 LDIVIPTIRNLD----FLEMWRP---FFEPYHLIIVQDGD 48 (361)
Q Consensus 16 i~IVItTi~~p~----~L~~~~~---~l~~~~vVVV~D~~ 48 (361)
+.|||.|+|+|+ +|+++++ ..+.++|+|++|++
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~ 41 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGG 41 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCC
Confidence 469999999995 4444433 24588999999995
No 54
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=96.42 E-value=0.0021 Score=61.50 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=35.6
Q ss_pred eeecccchhhhhhhccchhhhhcccCCCC-CC---CccchhHHHHHHHHHHHHhCCeEEEecCee-eeccC
Q 018080 205 LFPMCGMNLAFDRELIGPAMYFGLMGDGQ-PI---GRYDDMWAGWCMKVICDHMGWGVKTGLPYI-WHSKA 270 (361)
Q Consensus 205 ~~P~nsqNtaF~r~a~~pa~~~~~m~~~~-~~---~R~~DIWrgy~~qri~~~~G~~v~fg~P~v-~~~r~ 270 (361)
..++++-|.+++|++| =..-.+|..+|. .+ .=.+|..-|+-++ ..|+.+++.+-.+ .....
T Consensus 168 ~~~~~G~~~~~Rr~al-~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~----~~G~ri~~~~~~~~~~~~~ 233 (254)
T cd04191 168 EGNYWGHNAIIRVAAF-MEHCALPVLPGRPPFGGHILSHDFVEAALMR----RAGWEVRLAPDLEGSYEEC 233 (254)
T ss_pred ccCccceEEEEEHHHH-HHhcCCccccCCCCCCCCeecHHHHHHHHHH----HcCCEEEEccCCcceEeEC
Confidence 4678899999999987 111111211111 11 2346888777655 4799999965444 34444
No 55
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.35 E-value=0.004 Score=62.15 Aligned_cols=86 Identities=17% Similarity=0.301 Sum_probs=58.0
Q ss_pred CceEEEEecccCh-hHHHHhhcc-----CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC---Ccccc----
Q 018080 14 DELDIVIPTIRNL-DFLEMWRPF-----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP---KASCI---- 80 (361)
Q Consensus 14 ~~i~IVItTi~~p-~~L~~~~~~-----l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~---~~~~i---- 80 (361)
-.++|+||+||++ +.++....+ .++++++||.|++ +.+.++ -+++.... ...++
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~------~d~~~~-------~~~~~~~~~~~~~~~~~~~~ 120 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGS------TDETYE-------ILEELGAEYGPNFRVIYPEK 120 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCC------ChhHHH-------HHHHHHhhcCcceEEEeccc
Confidence 5799999999988 377666443 3678999999984 555552 22222111 11111
Q ss_pred -CCCcccchhheeeEEeceeeEeecCCccccCC
Q 018080 81 -SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 81 -P~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d 112 (361)
.-+....-|.|+-.|.+|+|+.+|.|..|.+|
T Consensus 121 ~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d 153 (439)
T COG1215 121 KNGGKAGALNNGLKRAKGDVVVILDADTVPEPD 153 (439)
T ss_pred cCccchHHHHHHHhhcCCCEEEEEcCCCCCChh
Confidence 12235566777788889999999999999993
No 56
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=96.00 E-value=0.0012 Score=62.51 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=46.3
Q ss_pred cccC-hhHHHHhhccC--CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC--CCcccc----CCCcccchhhee
Q 018080 22 TIRN-LDFLEMWRPFF--EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG--PKASCI----SFKDSACRCFGY 92 (361)
Q Consensus 22 Ti~~-p~~L~~~~~~l--~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~--~~~~~i----P~~s~arRN~Gy 92 (361)
|||. .+.|+.+.+++ +..++|||+|+| .+..+. +.++. ...+++ .-+.++.+|.|.
T Consensus 2 tyn~~~~~l~~~l~sl~~q~~~iiVVDN~S-----~~~~~~----------~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi 66 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQVDRIIAVDNSP-----HSDQPL----------KNARLRGQKIALIHLGDNQGIAGAQNQGL 66 (281)
T ss_pred ccCccHHHHHHHHHHHHhcCCEEEEEECcC-----CCcHhH----------HHHhccCCCeEEEECCCCcchHHHHHHHH
Confidence 7885 44444433322 357999999995 111111 11111 112222 235678899998
Q ss_pred eEE---eceeeEeecCCccccCC
Q 018080 93 MVS---KKKYIFTIDDDCFVAKD 112 (361)
Q Consensus 93 L~A---~a~yI~~~DDD~~P~~d 112 (361)
-+| .++||+++|+|+.|.++
T Consensus 67 ~~a~~~~~d~i~~lD~D~~~~~~ 89 (281)
T TIGR01556 67 DASFRRGVQGVLLLDQDSRPGNA 89 (281)
T ss_pred HHHHHCCCCEEEEECCCCCCCHH
Confidence 777 47999999999999984
No 57
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=95.43 E-value=0.028 Score=54.57 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=55.5
Q ss_pred CceEEEEecccCh----hHHHHhhccC-CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCcccc----CCCc
Q 018080 14 DELDIVIPTIRNL----DFLEMWRPFF-EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCI----SFKD 84 (361)
Q Consensus 14 ~~i~IVItTi~~p----~~L~~~~~~l-~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~i----P~~s 84 (361)
-++++||.|||+. +||+.++.+. +.-++|+|++++ ++... +..+........+| -.+.
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s------~d~~~-------~~~~~~~~~~v~~i~~~~NlG~ 69 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGS------TDGSL-------EALKARFFPNVRLIENGENLGF 69 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCC------CCCCH-------HHHHhhcCCcEEEEEcCCCccc
Confidence 4689999999988 5666666554 444555677774 44443 22222101111110 1223
Q ss_pred ccchhheeeEEece---eeEeecCCccccCCCCCCcchhhhhhhcccc
Q 018080 85 SACRCFGYMVSKKK---YIFTIDDDCFVAKDPSGKEINALEQHIKNLL 129 (361)
Q Consensus 85 ~arRN~GyL~A~a~---yI~~~DDD~~P~~d~~g~~~Df~~~h~~~l~ 129 (361)
++.=|.|..+|.++ |++++++|+.+.+ |++++.+..+.
T Consensus 70 agg~n~g~~~a~~~~~~~~l~LN~D~~~~~-------~~l~~ll~~~~ 110 (305)
T COG1216 70 AGGFNRGIKYALAKGDDYVLLLNPDTVVEP-------DLLEELLKAAE 110 (305)
T ss_pred hhhhhHHHHHHhcCCCcEEEEEcCCeeeCh-------hHHHHHHHHHH
Confidence 33445666677554 9999999988887 56665444444
No 58
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=94.85 E-value=0.036 Score=58.44 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=56.0
Q ss_pred CCceEEEEecccCh----hHHHHhhcc--CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC--cc------
Q 018080 13 KDELDIVIPTIRNL----DFLEMWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK--AS------ 78 (361)
Q Consensus 13 ~~~i~IVItTi~~p----~~L~~~~~~--l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~--~~------ 78 (361)
.-.++|+||.+|+. ++|+..... -+.++|+|++|++ ++++. +..+++.... .+
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~n------dd~T~-------~~v~~l~~~~p~v~~vv~~~ 131 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPN------DPATL-------REVDRLAARYPRVHLVIVPH 131 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCC------ChhHH-------HHHHHHHHHCCCeEEEEeCC
Confidence 34599999999988 455543222 3789999999884 66654 3334332111 11
Q ss_pred ccCCCcccchhheeeEE------ec---eeeEeecCCccccCC
Q 018080 79 CISFKDSACRCFGYMVS------KK---KYIFTIDDDCFVAKD 112 (361)
Q Consensus 79 ~iP~~s~arRN~GyL~A------~a---~yI~~~DDD~~P~~d 112 (361)
--|.....+-|.|+-.+ .+ ++|+++|-|+.|+++
T Consensus 132 ~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd 174 (504)
T PRK14716 132 DGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPL 174 (504)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCcc
Confidence 12334566777777432 23 999999999999994
No 59
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=94.19 E-value=0.063 Score=58.68 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCceEEEEecccCh-h----HHHHhhcc------CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC-----
Q 018080 13 KDELDIVIPTIRNL-D----FLEMWRPF------FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK----- 76 (361)
Q Consensus 13 ~~~i~IVItTi~~p-~----~L~~~~~~------l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~----- 76 (361)
...++||||+||+. + .|++..++ .++++++|++|++ +|+.+..+--.-.+..+..+..
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~------d~~~~~~e~~~~~~L~~~~~~~~~i~y 196 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTR------DPDIAAAEEAAWLELRAELGGEGRIFY 196 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCC------ChhHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 34699999999966 2 45444332 2579999999994 7766521100001111111110
Q ss_pred ccccCCCcccchhheeeEE----eceeeEeecCCccccC
Q 018080 77 ASCISFKDSACRCFGYMVS----KKKYIFTIDDDCFVAK 111 (361)
Q Consensus 77 ~~~iP~~s~arRN~GyL~A----~a~yI~~~DDD~~P~~ 111 (361)
.+...-.+..+-|++.... ..|||+.+|-|..+.+
T Consensus 197 r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~ 235 (691)
T PRK05454 197 RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSG 235 (691)
T ss_pred EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCH
Confidence 1111112334456665443 3499999999999999
No 60
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=92.15 E-value=0.27 Score=46.08 Aligned_cols=88 Identities=18% Similarity=0.310 Sum_probs=51.8
Q ss_pred CceEEEEecccChh----HHHHhhcc----CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC-ccccCCCc
Q 018080 14 DELDIVIPTIRNLD----FLEMWRPF----FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-ASCISFKD 84 (361)
Q Consensus 14 ~~i~IVItTi~~p~----~L~~~~~~----l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~-~~~iP~~s 84 (361)
.+.+|++||||+-+ ++..+... -..|++|||+|. .|+|-. =...+.|+..+.. .-++|-.+
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~-------SpDGt~---~~a~~L~k~yg~d~i~l~pR~~ 72 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDA-------SPDGTQ---EVAKALQKIYGEDNILLKPRTK 72 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCC-------CCCccH---HHHHHHHHHhCCCcEEEEeccC
Confidence 46899999999663 22222222 368999999999 577631 0112223333322 22233221
Q ss_pred ----ccchhheeeEEeceeeEeecCCccccC
Q 018080 85 ----SACRCFGYMVSKKKYIFTIDDDCFVAK 111 (361)
Q Consensus 85 ----~arRN~GyL~A~a~yI~~~DDD~~P~~ 111 (361)
.++=-.|+-.|.++||+.+|.|-.-++
T Consensus 73 klGLgtAy~hgl~~a~g~fiviMDaDlsHhP 103 (238)
T KOG2978|consen 73 KLGLGTAYIHGLKHATGDFIVIMDADLSHHP 103 (238)
T ss_pred cccchHHHHhhhhhccCCeEEEEeCccCCCc
Confidence 122233556677999999999988776
No 61
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=0.25 Score=49.18 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=58.4
Q ss_pred CCceEEEEecccCh---hHHHHhhc---cCCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCC-Cccc---cCC
Q 018080 13 KDELDIVIPTIRNL---DFLEMWRP---FFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGP-KASC---ISF 82 (361)
Q Consensus 13 ~~~i~IVItTi~~p---~~L~~~~~---~l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~-~~~~---iP~ 82 (361)
..-|-||-|||+++ -.|.++.. +.+++|.|||-|++ -.+|+. ..+-+..|- +.|+ -|.
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~V~nLhWIVVEd~~----~~~p~v--------~~~L~rtgl~ythl~~~t~~ 153 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRLVPNLHWIVVEDGE----GTTPEV--------SGILRRTGLPYTHLVHKTPM 153 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhhcCCeeEEEEecCC----CCCHHH--------HHHHHHcCCceEEEeccCCC
Confidence 55588899999999 45555543 35899999999983 134443 222222221 1222 222
Q ss_pred C-----cccchhheeeEEe---------ceeeEeecCCccccCCCCCCcchhhhhhhccc
Q 018080 83 K-----DSACRCFGYMVSK---------KKYIFTIDDDCFVAKDPSGKEINALEQHIKNL 128 (361)
Q Consensus 83 ~-----s~arRN~GyL~A~---------a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~~l 128 (361)
+ +--.||.|..+-+ --.+||.||||.= ++++|++ +++.
T Consensus 154 ~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~Y-------dleLF~e-iR~v 205 (330)
T KOG1476|consen 154 GYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTY-------DLELFEE-IRNV 205 (330)
T ss_pred CCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcch-------hHHHHHH-Hhcc
Confidence 2 3455777764432 2589999999982 3578877 6543
No 62
>PLN02458 transferase, transferring glycosyl groups
Probab=89.21 E-value=0.28 Score=49.22 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=53.9
Q ss_pred eEEEEeccc-Ch---hHHHHhhcc---CC-CeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC-CCcccc---C--
Q 018080 16 LDIVIPTIR-NL---DFLEMWRPF---FE-PYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG-PKASCI---S-- 81 (361)
Q Consensus 16 i~IVItTi~-~p---~~L~~~~~~---l~-~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~-~~~~~i---P-- 81 (361)
|-||-|||. ++ -.|.++... .+ +++.|||-|+. ++++. .++-+..| .+.|+. .
T Consensus 114 IivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~~-----~t~~v--------a~lLrrsGl~y~HL~~k~~~~ 180 (346)
T PLN02458 114 VIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQS-----DSEEV--------SEMLRKTGIMYRHLVFKENFT 180 (346)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCCC-----CCHHH--------HHHHHHcCCceEEeccCCCCC
Confidence 677788997 67 466666443 45 89999999985 55553 22221111 122321 1
Q ss_pred ---CCcccchhheeeEEe----ceeeEeecCCccccCCCCCCcchhhhh
Q 018080 82 ---FKDSACRCFGYMVSK----KKYIFTIDDDCFVAKDPSGKEINALEQ 123 (361)
Q Consensus 82 ---~~s~arRN~GyL~A~----a~yI~~~DDD~~P~~d~~g~~~Df~~~ 123 (361)
.+....||.|.-+=+ .-++||.||||. .++++|++
T Consensus 181 ~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNt-------Ysl~LFeE 222 (346)
T PLN02458 181 DPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNV-------YDLDFFDE 222 (346)
T ss_pred CccchhHHHHHHHHHHHHhcCcCceEEEccCCCc-------ccHHHHHH
Confidence 122455888874443 468999999998 23577776
No 63
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=89.05 E-value=0.16 Score=48.36 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=55.2
Q ss_pred eEEEEecccCh---hHHHHhhc---cCCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhC-CCccc---------
Q 018080 16 LDIVIPTIRNL---DFLEMWRP---FFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILG-PKASC--------- 79 (361)
Q Consensus 16 i~IVItTi~~p---~~L~~~~~---~l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~-~~~~~--------- 79 (361)
|-||-|||.++ -.|.++.. +.++++-|||-|+. -++|+.- ++-+..| .+.|+
T Consensus 3 i~vVTPTy~R~~Q~~~LtRLa~TL~lVp~l~WIVVEd~~----~~t~~va--------~lL~~sgl~y~HL~~~~~~~~~ 70 (223)
T cd00218 3 IYVVTPTYARPVQKAELTRLAHTLRLVPPLHWIVVEDSE----EKTPLVA--------ELLRRSGLMYTHLNAKTPSDPT 70 (223)
T ss_pred EEEECCCCccchhhHHHHHHHHHHhcCCceEEEEEeCCC----CCCHHHH--------HHHHHcCCceEEeccCCCCCcc
Confidence 55788999999 56666643 35899999999983 1233321 1111111 11222
Q ss_pred -cCCCcccchhheeeEE-------eceeeEeecCCccccCCCCCCcchhhhhhhcc
Q 018080 80 -ISFKDSACRCFGYMVS-------KKKYIFTIDDDCFVAKDPSGKEINALEQHIKN 127 (361)
Q Consensus 80 -iP~~s~arRN~GyL~A-------~a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~~ 127 (361)
++-+....||.|.-+= ..-++||.||||. + ++.+|++ ++.
T Consensus 71 ~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~-Y------sl~lF~e-mR~ 118 (223)
T cd00218 71 WLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNT-Y------DLELFEE-MRK 118 (223)
T ss_pred cCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCc-c------cHHHHHH-Hhc
Confidence 2234566788777332 2358999999997 3 3577776 443
No 64
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=87.94 E-value=0.63 Score=51.32 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=53.9
Q ss_pred CceEEEEecccChh----HHHHhhcc--CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhh---CCC--ccc---
Q 018080 14 DELDIVIPTIRNLD----FLEMWRPF--FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRIL---GPK--ASC--- 79 (361)
Q Consensus 14 ~~i~IVItTi~~p~----~L~~~~~~--l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l---~~~--~~~--- 79 (361)
..++|+||.+|+.. .++.+... -++++++++.|.+ ++.+. +..+++- +.. ..+
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~n------D~~T~-------~~~~~l~~~~p~~~~v~~~~~ 129 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPN------DPATQ-------ADVDAVCARFPNVHKVVCARP 129 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCC------ChhHH-------HHHHHHHHHCCCcEEEEeCCC
Confidence 34999999999984 44433212 4789999998873 66543 3333332 111 011
Q ss_pred cCCCcccchhheeeEE-------e--ceeeEeecCCccccCC
Q 018080 80 ISFKDSACRCFGYMVS-------K--KKYIFTIDDDCFVAKD 112 (361)
Q Consensus 80 iP~~s~arRN~GyL~A-------~--a~yI~~~DDD~~P~~d 112 (361)
=|-....+-|.|+..+ . .+.++.+|-||.|.++
T Consensus 130 g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 130 GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 1345667778887655 1 2557779999999993
No 65
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.77 E-value=1.6 Score=45.25 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=55.8
Q ss_pred eEEEEecccCh-h-HHHHhhccCC----C--eEEEEEeCCCCCCcccCCCCcc-------ccccCHHHHHHhhCCCcccc
Q 018080 16 LDIVIPTIRNL-D-FLEMWRPFFE----P--YHLIIVQDGDPSKTIKVPDGFD-------YELYNRNDINRILGPKASCI 80 (361)
Q Consensus 16 i~IVItTi~~p-~-~L~~~~~~l~----~--~~vVVV~D~~~~~~~ktPe~~~-------~~~~~~~d~e~~l~~~~~~i 80 (361)
.+||||.-|+- + -|+-+.+-|. . .++|.|+|.| ++|++-. +.++...+.+-+
T Consensus 126 TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S-----~Dped~~~L~ri~kvr~LRN~~ReGL-------- 192 (559)
T KOG3738|consen 126 TSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFS-----QDPEDGKLLKRIPKVRVLRNNEREGL-------- 192 (559)
T ss_pred ceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCC-----CChHHHHHHhhhheeeeecccchhhh--------
Confidence 68888888866 3 3333332221 1 3999999998 7887752 112222222211
Q ss_pred CCCcccchhheeeEEeceeeEeecCCccccCCCCCCcch
Q 018080 81 SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEIN 119 (361)
Q Consensus 81 P~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~D 119 (361)
-.-|+.|-=.|.+.|+-|+|--|....+|+..-+.
T Consensus 193 ----irSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~ 227 (559)
T KOG3738|consen 193 ----IRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLE 227 (559)
T ss_pred ----hhhhccccccccceEEEEEecceeecchhhHHHHH
Confidence 12356677788899999999999999998765443
No 66
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=77.93 E-value=3.5 Score=45.51 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=54.0
Q ss_pred CceEEEEecccChhHHHHhhcc------CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCC-----c---cc
Q 018080 14 DELDIVIPTIRNLDFLEMWRPF------FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPK-----A---SC 79 (361)
Q Consensus 14 ~~i~IVItTi~~p~~L~~~~~~------l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~-----~---~~ 79 (361)
.-++|+||.+|+.+.+..+.++ -++++++|+.+.+ ++++- +.++++-... . +-
T Consensus 71 ~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~n------D~~T~-------~~~~~~~~~~p~~~~v~~~~~ 137 (703)
T PRK15489 71 QPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPN------DAETI-------TEVERMRRRYKRLVRVEVPHD 137 (703)
T ss_pred CceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCC------CccHH-------HHHHHHhccCCcEEEEEcCCC
Confidence 4599999999999555554332 3688988865442 33333 4444443221 1 11
Q ss_pred cCCCcccchhheeeEE-------ec--eeeEeecCCccccCCC
Q 018080 80 ISFKDSACRCFGYMVS-------KK--KYIFTIDDDCFVAKDP 113 (361)
Q Consensus 80 iP~~s~arRN~GyL~A-------~a--~yI~~~DDD~~P~~d~ 113 (361)
-|-....+-|.|+..+ .. +.|+..|-|+.|+++-
T Consensus 138 gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~ 180 (703)
T PRK15489 138 GPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLE 180 (703)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhH
Confidence 3445777788887654 11 2388999999999963
No 67
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=68.29 E-value=3.3 Score=36.69 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCCCCCCCCceEEEEecccChhHHHHhhcc--------CCCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCc
Q 018080 6 TKPTPLLKDELDIVIPTIRNLDFLEMWRPF--------FEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKA 77 (361)
Q Consensus 6 ~~~~~~~~~~i~IVItTi~~p~~L~~~~~~--------l~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~ 77 (361)
.+.......++.||||--++.+-|+.+..+ --.+++.||-=.+
T Consensus 39 ~p~~C~~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~y~I~vieQ~~----------------------------- 89 (136)
T PF13733_consen 39 KPPDCKPRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLDYRIFVIEQVD----------------------------- 89 (136)
T ss_dssp --SSSB-S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEE-S-----------------------------
T ss_pred cCCccccccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcceEEEEEEeecc-----------------------------
Confidence 344455566799999987777655555332 2366777775321
Q ss_pred cccCCCcccchhheeeEEe----ceeeEeecCCccccCC
Q 018080 78 SCISFKDSACRCFGYMVSK----KKYIFTIDDDCFVAKD 112 (361)
Q Consensus 78 ~~iP~~s~arRN~GyL~A~----a~yI~~~DDD~~P~~d 112 (361)
-.+|+-..-.|+||+.|. .++++|=|=|-+|..+
T Consensus 90 -~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 90 -NGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp -SS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred -CCCCchhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 124888888999999995 5899999999999885
No 68
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=67.06 E-value=2.6 Score=40.82 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=17.0
Q ss_pred ccCCCCCCCCcccccCCCC
Q 018080 140 LYDPYREGADFVRGYPFSL 158 (361)
Q Consensus 140 lY~~~~~~~~wPRGyPl~~ 158 (361)
+++|||...+||||||=.+
T Consensus 123 ~WDPfGYnNMFPr~~ldDL 141 (249)
T PF04583_consen 123 FWDPFGYNNMFPREYLDDL 141 (249)
T ss_pred hcCcccccccCCCcchHHH
Confidence 5999999999999999655
No 69
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.90 E-value=6 Score=39.09 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=34.5
Q ss_pred cCCCc-ccchhheeeEEe----ceeeEeecCCccccCCCCCCcchhhhhhhcccc
Q 018080 80 ISFKD-SACRCFGYMVSK----KKYIFTIDDDCFVAKDPSGKEINALEQHIKNLL 129 (361)
Q Consensus 80 iP~~s-~arRN~GyL~A~----a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~~l~ 129 (361)
-||.+ ..|||.|--||- .+||.|+|-||.-.. |-|++|....+
T Consensus 73 ~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~-------dnF~k~l~~~~ 120 (346)
T COG4092 73 EPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS-------DNFAKMLSIAT 120 (346)
T ss_pred ccccchhhhhhccchhhhccccccEEEEEeccccccH-------HHHHHHHHHHH
Confidence 45666 889999999996 899999999999776 66777764444
No 70
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.89 E-value=4.2 Score=42.11 Aligned_cols=102 Identities=11% Similarity=0.146 Sum_probs=60.6
Q ss_pred eEEEEecccCh-h-HHHHhhccC---C---CeEEEEEeCCCCCCcccCCCC-----cc--ccccCHHHHHHhhCCCcccc
Q 018080 16 LDIVIPTIRNL-D-FLEMWRPFF---E---PYHLIIVQDGDPSKTIKVPDG-----FD--YELYNRNDINRILGPKASCI 80 (361)
Q Consensus 16 i~IVItTi~~p-~-~L~~~~~~l---~---~~~vVVV~D~~~~~~~ktPe~-----~~--~~~~~~~d~e~~l~~~~~~i 80 (361)
.+|||-.-|+. . -|+-+.+-+ + =-++|.|+|-|..+.+|.--+ |+ +.++..+++|
T Consensus 157 ~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~RE---------- 226 (603)
T KOG3737|consen 157 SSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERRE---------- 226 (603)
T ss_pred ceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecchhh----------
Confidence 57888887766 3 333332111 1 128999999874444443222 11 1222222222
Q ss_pred CCCcccchhheeeEEeceeeEeecCCccccCCCCCCcchhhhhhhcccc
Q 018080 81 SFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLL 129 (361)
Q Consensus 81 P~~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~~l~ 129 (361)
+--..|++|-.-|.+++|+|+|.-|.+..+|+-..+..+.+.....+
T Consensus 227 --GLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmT 273 (603)
T KOG3737|consen 227 --GLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMT 273 (603)
T ss_pred --hhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEE
Confidence 23356888999999999999999999999987655554444333333
No 71
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.27 E-value=3.1 Score=44.84 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=66.6
Q ss_pred ceEEEEecccCh-hHH-HHhh---ccCCC---eEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccc--c--CC
Q 018080 15 ELDIVIPTIRNL-DFL-EMWR---PFFEP---YHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASC--I--SF 82 (361)
Q Consensus 15 ~i~IVItTi~~p-~~L-~~~~---~~l~~---~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~--i--P~ 82 (361)
..+|||.-+|+. ..| +.+- ...+. -++|+|+|.|....++.+-+ +.+.+... +.+ . =-
T Consensus 143 ~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld--------~y~k~~~~--v~i~r~~~R~ 212 (578)
T KOG3736|consen 143 TTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLE--------EYVKRFSK--VRILRTKKRE 212 (578)
T ss_pred CCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhH--------HHHhhhcc--eeEEeecchh
Confidence 368899888866 333 2221 11122 29999999986665555522 22222211 010 0 02
Q ss_pred CcccchhheeeEEeceeeEeecCCccccCCCCCCcchhhhhhhcccccC
Q 018080 83 KDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSP 131 (361)
Q Consensus 83 ~s~arRN~GyL~A~a~yI~~~DDD~~P~~d~~g~~~Df~~~h~~~l~~~ 131 (361)
+--.+|.+|--.|.++.++|+|--|.....|+..-++-+.+....+.+|
T Consensus 213 GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~P 261 (578)
T KOG3736|consen 213 GLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCP 261 (578)
T ss_pred hhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecc
Confidence 2446788999999999999999999999999887777666543344443
No 72
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=55.03 E-value=14 Score=35.13 Aligned_cols=68 Identities=15% Similarity=0.336 Sum_probs=50.5
Q ss_pred ceEEEEecccChhHHHHhhccC--------CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCccccCCCccc
Q 018080 15 ELDIVIPTIRNLDFLEMWRPFF--------EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSA 86 (361)
Q Consensus 15 ~i~IVItTi~~p~~L~~~~~~l--------~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~~~iP~~s~a 86 (361)
++.||||-.++.+-|..+.+++ -++.+.|+-=.+ -.+|+-..
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~~------------------------------~~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVG------------------------------NFRFNRAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecC------------------------------Cccchhhh
Confidence 5899999988887777665542 355666665321 12488888
Q ss_pred chhheeeEEe----ceeeEeecCCccccCC
Q 018080 87 CRCFGYMVSK----KKYIFTIDDDCFVAKD 112 (361)
Q Consensus 87 rRN~GyL~A~----a~yI~~~DDD~~P~~d 112 (361)
.-|+||+.|. .+++++=|=|-+|..+
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~ 82 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPEND 82 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCc
Confidence 9999999996 3689999999999985
No 73
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=52.39 E-value=12 Score=38.21 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=56.1
Q ss_pred CceEEEEecccCh-hHHHHhhccC-CCeEEEEEeCCCCCCcccCCCC-cc--cc---ccCH-HH-------------HHH
Q 018080 14 DELDIVIPTIRNL-DFLEMWRPFF-EPYHLIIVQDGDPSKTIKVPDG-FD--YE---LYNR-ND-------------INR 71 (361)
Q Consensus 14 ~~i~IVItTi~~p-~~L~~~~~~l-~~~~vVVV~D~~~~~~~ktPe~-~~--~~---~~~~-~d-------------~e~ 71 (361)
++..||||.-++. .-|+-+..+. .++-+|||.... +.|.+ |. ++ -|.. .+ -++
T Consensus 51 ~~mAIVVP~KdE~l~lleGVL~gIPh~c~iIvVSNS~-----r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la~A 125 (393)
T PRK14503 51 GRMAIVVPVKNERLKLLEGVLKGIPHECPIIVVSNSK-----REPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLAEA 125 (393)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCC-----CCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHHHH
Confidence 4578999999955 8888877665 577888888874 33333 33 11 1111 11 111
Q ss_pred hh-CCCccccCCCcccchh------heeeEEe---ceeeEeecCCccccC
Q 018080 72 IL-GPKASCISFKDSACRC------FGYMVSK---KKYIFTIDDDCFVAK 111 (361)
Q Consensus 72 ~l-~~~~~~iP~~s~arRN------~GyL~A~---a~yI~~~DDD~~P~~ 111 (361)
+. .-+..++.-++.-|.- +|.|.|+ ++||=|+|-||...+
T Consensus 126 f~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG 175 (393)
T PRK14503 126 LKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG 175 (393)
T ss_pred HHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc
Confidence 11 1124445443333332 5667775 799999999999887
No 74
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=52.20 E-value=12 Score=38.03 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=56.3
Q ss_pred CceEEEEecccCh-hHHHHhhccC-CCeEEEEEeCCCCCCcccCCC-Ccc--cc---ccCH-HH-------------HHH
Q 018080 14 DELDIVIPTIRNL-DFLEMWRPFF-EPYHLIIVQDGDPSKTIKVPD-GFD--YE---LYNR-ND-------------INR 71 (361)
Q Consensus 14 ~~i~IVItTi~~p-~~L~~~~~~l-~~~~vVVV~D~~~~~~~ktPe-~~~--~~---~~~~-~d-------------~e~ 71 (361)
++..||||.-++. .-|+-+..+. .++-+|||...+ +.|. .|. ++ -|.. .+ -++
T Consensus 50 ~~maIVVP~KdE~l~lleGVL~gIPh~c~iIvVSNS~-----r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~A 124 (381)
T TIGR02460 50 GKTAIVVPVKNEKLHLLEGVLSGIPHECPIIIVSNSK-----REPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAEA 124 (381)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCC-----CCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHH
Confidence 4578999999965 8888877665 577888888874 3333 333 11 1111 11 111
Q ss_pred hh-CCCccccCCCcccchh------heeeEEe---ceeeEeecCCccccC
Q 018080 72 IL-GPKASCISFKDSACRC------FGYMVSK---KKYIFTIDDDCFVAK 111 (361)
Q Consensus 72 ~l-~~~~~~iP~~s~arRN------~GyL~A~---a~yI~~~DDD~~P~~ 111 (361)
+. .-+..++.-++.-|.- +|.|.|+ ++||=|+|-||...+
T Consensus 125 f~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG 174 (381)
T TIGR02460 125 FKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG 174 (381)
T ss_pred HHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc
Confidence 11 1124445444433332 5667775 799999999999887
No 75
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=49.59 E-value=11 Score=38.41 Aligned_cols=92 Identities=18% Similarity=0.298 Sum_probs=48.1
Q ss_pred CceEEEEecccCh-hHHHHhhccC-CCeEEEEEeCCCCCCcccCCCC-cc--ccc----cCHH-------------HHHH
Q 018080 14 DELDIVIPTIRNL-DFLEMWRPFF-EPYHLIIVQDGDPSKTIKVPDG-FD--YEL----YNRN-------------DINR 71 (361)
Q Consensus 14 ~~i~IVItTi~~p-~~L~~~~~~l-~~~~vVVV~D~~~~~~~ktPe~-~~--~~~----~~~~-------------d~e~ 71 (361)
++..||||.-++. .-|+-+..+. .++-+|||...+ ..|.+ |. ++. +... --++
T Consensus 50 ~~maIVVP~KnE~l~lleGVL~gIPh~C~IIvVSNS~-----r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~A 124 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLKLLEGVLSGIPHDCLIIVVSNSS-----REPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAEA 124 (381)
T ss_dssp TTEEEEEEESS--HHHHHHHHHCS-TTSEEEEEE--------CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHHH
T ss_pred hCcEEEEECCCCchhhhhhhhhcCCCCCeEEEEECCC-----CCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHHH
Confidence 4578999999955 8888877665 677888888874 33332 22 111 1111 1111
Q ss_pred hh-CCCccccCCCcccchh-------heeeEEe---ceeeEeecCCccccC
Q 018080 72 IL-GPKASCISFKDSACRC-------FGYMVSK---KKYIFTIDDDCFVAK 111 (361)
Q Consensus 72 ~l-~~~~~~iP~~s~arRN-------~GyL~A~---a~yI~~~DDD~~P~~ 111 (361)
+. .-+..++.-++. -|| +|.|.|+ ++||=|+|-||...+
T Consensus 125 f~~aGy~~il~~~g~-VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPG 174 (381)
T PF09488_consen 125 FKEAGYPEILDEDGL-VRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPG 174 (381)
T ss_dssp HHHTT--TTB-TTSS-B-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HH
T ss_pred HHHcCcHHHhCCCCc-eecCchHHHHHHHHHHHhcCCceEeEeeccCCCcc
Confidence 11 112444544444 333 6777776 799999999999876
No 76
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=46.33 E-value=14 Score=34.95 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=22.2
Q ss_pred CCcccchhheeeEEe-------ceeeEeecCCccccCCCCCCcchhhhh
Q 018080 82 FKDSACRCFGYMVSK-------KKYIFTIDDDCFVAKDPSGKEINALEQ 123 (361)
Q Consensus 82 ~~s~arRN~GyL~A~-------a~yI~~~DDD~~P~~d~~g~~~Df~~~ 123 (361)
-++...||.|+-+-+ .-+|||.||||.= ++.+|++
T Consensus 56 ~rg~~qRn~AL~~ir~~~~~~~~GVVyFaDDdNtY-------dl~LF~e 97 (207)
T PF03360_consen 56 PRGVHQRNAALRWIRNNANHRLDGVVYFADDDNTY-------DLRLFDE 97 (207)
T ss_dssp -TSHHHHHHHHHHHHSTTTSSS-EEEEE--TTSEE--------HHHHHH
T ss_pred cccHHHHHHHHHHHHhcccCCCCcEEEECCCCCee-------eHHHHHH
Confidence 456778899984433 4699999999983 3467776
No 77
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=37.77 E-value=43 Score=30.16 Aligned_cols=47 Identities=15% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCCceeeccc-chhhhhhhccchhhhhcccCCCCCCCccchhHHHHHHHHH
Q 018080 201 PKGTLFPMCG-MNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVI 250 (361)
Q Consensus 201 p~gt~~P~ns-qNtaF~r~a~~pa~~~~~m~~~~~~~R~~DIWrgy~~qri 250 (361)
|.+.|-|+|+ .--++.++++ .-++.... ..+.+..+|++=|.|++++
T Consensus 140 ~~~~yP~y~~G~~yvls~~~v-~~i~~~~~--~~~~~~~eDv~iGi~~~~~ 187 (195)
T PF01762_consen 140 PDDYYPPYCSGGGYVLSSDVV-KRIYKASS--HTPFFPLEDVFIGILAEKL 187 (195)
T ss_pred ccccCCCcCCCCeEEecHHHH-HHHHHHhh--cCCCCCchHHHHHHHHHHC
Confidence 4444555554 4444555555 44442111 1256889999999999864
No 78
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=30.10 E-value=40 Score=37.37 Aligned_cols=93 Identities=17% Similarity=0.275 Sum_probs=55.7
Q ss_pred CceEEEEecccCh-hHHHHhhccC-CCeEEEEEeCCCCCCcccCC-CCcc--cc---ccCH-HH-------------HHH
Q 018080 14 DELDIVIPTIRNL-DFLEMWRPFF-EPYHLIIVQDGDPSKTIKVP-DGFD--YE---LYNR-ND-------------INR 71 (361)
Q Consensus 14 ~~i~IVItTi~~p-~~L~~~~~~l-~~~~vVVV~D~~~~~~~ktP-e~~~--~~---~~~~-~d-------------~e~ 71 (361)
.+..||||.-++. .-|+-+..+. .++-+|||...+ +.| +-|. ++ .|.. .+ -++
T Consensus 55 ~~~aivvp~k~e~~~~~~gvl~~ip~~c~ii~vsns~-----r~~~d~~~~e~~~~~~~~~~~~~~~~~vhq~dp~~a~a 129 (694)
T PRK14502 55 KKMAIVLPIKDEDLKVFEGVLSGIPHDCLMIVISNSS-----KQEVDNFKNEKDIVNRFCRITHRQAIVVHQKNPELANA 129 (694)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcCCCCCeEEEEeCCC-----CCchHHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHH
Confidence 3478999999965 8888877665 577888888874 223 3333 11 1111 11 111
Q ss_pred hh-CCCccccCCCcccchh------heeeEEe---ceeeEeecCCccccC
Q 018080 72 IL-GPKASCISFKDSACRC------FGYMVSK---KKYIFTIDDDCFVAK 111 (361)
Q Consensus 72 ~l-~~~~~~iP~~s~arRN------~GyL~A~---a~yI~~~DDD~~P~~ 111 (361)
+. .-+..++.-++..|.- +|.|.|+ ++||=|+|-||...+
T Consensus 130 ~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg 179 (694)
T PRK14502 130 IADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPG 179 (694)
T ss_pred HHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCc
Confidence 11 1124445443333332 5667775 799999999999876
No 79
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=28.45 E-value=12 Score=28.96 Aligned_cols=22 Identities=45% Similarity=0.833 Sum_probs=19.5
Q ss_pred CCcccccCCCC-CCCcchheeee
Q 018080 148 ADFVRGYPFSL-REGVHTAVSHG 169 (361)
Q Consensus 148 ~~wPRGyPl~~-~egv~~~iqqG 169 (361)
..=-|.|||+. |+-++.||.+|
T Consensus 41 ~~~~rsF~YsLSR~DvE~Ai~~G 63 (63)
T PF11341_consen 41 QDIQRSFPYSLSREDVEAAIFSG 63 (63)
T ss_pred cccEEeccCcCCHHHHHHHHhcC
Confidence 67789999999 88999998876
No 80
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=27.09 E-value=91 Score=31.90 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=48.5
Q ss_pred CCCCCCCCCceEEEEecccChhHHHHhhccC--------CCeEEEEEeCCCCCCcccCCCCccccccCHHHHHHhhCCCc
Q 018080 6 TKPTPLLKDELDIVIPTIRNLDFLEMWRPFF--------EPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKA 77 (361)
Q Consensus 6 ~~~~~~~~~~i~IVItTi~~p~~L~~~~~~l--------~~~~vVVV~D~~~~~~~ktPe~~~~~~~~~~d~e~~l~~~~ 77 (361)
.|.-+....++.||||-=++-+-|..|..++ -++.+.||--.
T Consensus 143 ~P~dC~ar~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL~y~iyVieQ~------------------------------ 192 (372)
T KOG3916|consen 143 RPEDCQARHKVAIIIPFRNREEHLRYLLHHLHPFLQRQRLDYRIYVIEQA------------------------------ 192 (372)
T ss_pred CCCCCCccceeEEEeecccHHHHHHHHHHHhhHHHHhhhhceeEEEEEec------------------------------
Confidence 3444445556777777766666665554332 24555555422
Q ss_pred cccCCCcccchhheeeEEec----eeeEeecCCccccCC
Q 018080 78 SCISFKDSACRCFGYMVSKK----KYIFTIDDDCFVAKD 112 (361)
Q Consensus 78 ~~iP~~s~arRN~GyL~A~a----~yI~~~DDD~~P~~d 112 (361)
.--||+-+.--|+||+.|.+ +-.||=|-|-+|..|
T Consensus 193 g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenD 231 (372)
T KOG3916|consen 193 GNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPEND 231 (372)
T ss_pred CCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCC
Confidence 12457888888999999965 566777777777774
No 81
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=25.61 E-value=53 Score=34.50 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=46.3
Q ss_pred CccchhHHHHHHH---------HHHHHhCCeEEEecCeeeecc--C-CCCccchHHhhhhhhcchhhhhhhhh
Q 018080 236 GRYDDMWAGWCMK---------VICDHMGWGVKTGLPYIWHSK--A-SNPFVNLKKEYKGIYWQEELIPFFQS 296 (361)
Q Consensus 236 ~R~~DIWrgy~~q---------ri~~~~G~~v~fg~P~v~~~r--~-h~~~~Dl~~E~~~~~~~~~li~fl~~ 296 (361)
+-.+|...|||.- -++.++|..|.|+-+|..+.+ + |++++|-.+|++.=. ..+|+.||.+
T Consensus 395 glssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrr-l~~Li~~Fre 466 (552)
T KOG2492|consen 395 GLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRR-LFELITFFRE 466 (552)
T ss_pred cceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHH-HHHHHHHHHH
Confidence 5556888888853 579999999999999999777 6 999999888877543 3355555554
No 82
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=22.77 E-value=96 Score=26.25 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=30.9
Q ss_pred hcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018080 285 YWQEELIPFFQSCVLPKECTTVQQCYLELAKQVKAKLSKVDPYFDKLAEAMVTWI 339 (361)
Q Consensus 285 ~~~~~li~fl~~~~~~~~~~~~~~~~~~L~~~~~~~l~~~~~~~~~~a~~m~~Wl 339 (361)
+.++++++||.+.=|-.+..++..||..|....+++ +|=-=....+..+|
T Consensus 30 ~~~~eaw~~fksdYLr~e~Ps~~~cyrr~~~~a~~~-----Gw~iPS~~t~rRri 79 (108)
T PF09039_consen 30 EIDEEAWEFFKSDYLRPEKPSFSACYRRLKRAAKEN-----GWPIPSEKTLRRRI 79 (108)
T ss_dssp -S-HHHHHHHHHHHTSTT---HHHHHHHHHHHHHHH-----T-----HHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHc-----CCCCCCHHHHHHHH
Confidence 346789999999655556889999999999998887 44112344555555
No 83
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=22.61 E-value=33 Score=30.81 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=32.1
Q ss_pred ecccchhhhhhhccchhh-hhcccCCCCCCCccchhHHHHHHHHHHHHhCCeEEEecCeeee
Q 018080 207 PMCGMNLAFDRELIGPAM-YFGLMGDGQPIGRYDDMWAGWCMKVICDHMGWGVKTGLPYIWH 267 (361)
Q Consensus 207 P~nsqNtaF~r~a~~pa~-~~~~m~~~~~~~R~~DIWrgy~~qri~~~~G~~v~fg~P~v~~ 267 (361)
..+++-.+|.|+++- .. -+-... ..-.+| |..-+.+++.|+.|.+.+-.+.+
T Consensus 100 ~~~G~~m~~rr~~L~-~~GG~~~l~----~~ladD----~~l~~~~~~~G~~v~~~~~~v~~ 152 (175)
T PF13506_consen 100 FAWGGSMAFRREALE-EIGGFEALA----DYLADD----YALGRRLRARGYRVVLSPYPVVQ 152 (175)
T ss_pred ceecceeeeEHHHHH-HcccHHHHh----hhhhHH----HHHHHHHHHCCCeEEEcchheee
Confidence 367888899998882 21 011110 122334 66678899999999997733444
No 84
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=22.39 E-value=68 Score=31.84 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.7
Q ss_pred ceeeEeecCCccccCCC
Q 018080 97 KKYIFTIDDDCFVAKDP 113 (361)
Q Consensus 97 a~yI~~~DDD~~P~~d~ 113 (361)
++|.+-+.||-+..+++
T Consensus 170 ~~YyL~LEDDVia~~~f 186 (297)
T PF04666_consen 170 GDYYLQLEDDVIAAPGF 186 (297)
T ss_pred CCeEEEecCCeEechhH
Confidence 79999999999988843
No 85
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=22.17 E-value=1.2e+02 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.1
Q ss_pred ccchhheeeEEeceeeEeecCCccccC
Q 018080 85 SACRCFGYMVSKKKYIFTIDDDCFVAK 111 (361)
Q Consensus 85 ~arRN~GyL~A~a~yI~~~DDD~~P~~ 111 (361)
.+.=|.|.-.|.++|++|+.+|.....
T Consensus 43 ~~~yN~a~~~a~~~ylvflHqDv~i~~ 69 (217)
T PF13712_consen 43 AAAYNEAMEKAKAKYLVFLHQDVFIIN 69 (217)
T ss_dssp TTHHHHHGGG--SSEEEEEETTEE-SS
T ss_pred HHHHHHHHHhCCCCEEEEEeCCeEEcc
Confidence 344566666788999999999999886
No 86
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=20.65 E-value=16 Score=38.21 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=20.1
Q ss_pred CCceEEEEecccChh----HHHHhhc---cCCCeEEEEEeCCC
Q 018080 13 KDELDIVIPTIRNLD----FLEMWRP---FFEPYHLIIVQDGD 48 (361)
Q Consensus 13 ~~~i~IVItTi~~p~----~L~~~~~---~l~~~~vVVV~D~~ 48 (361)
...+-|+|=++|+|+ ||+++.+ ..+.+.+||-.|++
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~ 134 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGD 134 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCC
Confidence 334788899999995 5555433 24678999999995
Done!