Query 018081
Match_columns 361
No_of_seqs 106 out of 125
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05637 Glyco_transf_34: gala 39.2 34 0.00073 32.7 3.6 39 131-170 57-95 (239)
2 PF04244 DPRP: Deoxyribodipyri 38.0 32 0.00069 32.9 3.2 56 294-354 159-217 (224)
3 PF13506 Glyco_transf_21: Glyc 35.3 1.1E+02 0.0023 27.6 6.0 127 138-280 19-156 (175)
4 cd06437 CESA_CaSu_A2 Cellulose 22.9 76 0.0017 28.4 2.8 27 137-165 75-101 (232)
5 PF01501 Glyco_transf_8: Glyco 22.9 68 0.0015 28.6 2.5 33 150-182 97-132 (250)
6 cd04191 Glucan_BSP_ModH Glucan 21.0 88 0.0019 29.9 3.0 29 137-165 81-109 (254)
7 PF07172 GRP: Glycine rich pro 19.4 1E+02 0.0022 25.9 2.6 14 10-23 4-17 (95)
8 PRK05454 glucosyltransferase M 19.2 93 0.002 34.6 3.0 29 137-165 206-234 (691)
9 cd06434 GT2_HAS Hyaluronan syn 18.4 1.3E+02 0.0028 26.6 3.3 27 137-165 65-91 (235)
10 PRK11498 bcsA cellulose syntha 17.8 93 0.002 35.5 2.7 27 137-165 327-353 (852)
No 1
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=39.24 E-value=34 Score=32.68 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=24.8
Q ss_pred cCcccCchhHHHHHHHhcCCCccEEEEecCCeeeecCCCC
Q 018081 131 GYIVLNRPWAFVQWLEKATIEEEYILMAEPDHIFVKPLPN 170 (361)
Q Consensus 131 ~Y~v~NKP~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~~ 170 (361)
....-.|+.++++-|++-+ +.+||+-+|+|-||+.|=..
T Consensus 57 ~~~~W~K~~~lr~~m~~~P-~~~wv~~lD~Dali~n~~~~ 95 (239)
T PF05637_consen 57 RPGSWAKIPALRAAMKKYP-EAEWVWWLDSDALIMNPDFS 95 (239)
T ss_dssp HHHHHTHHHHHHHHHHH-T-T-SEEEEE-TTEEE------
T ss_pred CChhhHHHHHHHHHHHhCC-CCCEEEEEcCCeEEEecccc
Confidence 3445779999999997643 67999999999999986544
No 2
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=38.03 E-value=32 Score=32.86 Aligned_cols=56 Identities=27% Similarity=0.656 Sum_probs=24.0
Q ss_pred ccccccCCccccCccceeeeccccCCCCCCCCCCCCCCCCC--chHHH-HHHHHHHHHhhcCCC
Q 018081 294 GCDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPPPGV--PESVV-RLVKMVNEATANIPG 354 (361)
Q Consensus 294 G~~y~~~g~~~~gkig~W~FDKr~~~~~~p~~~l~~PP~~~--~~~~~-~lv~~~nea~~~lp~ 354 (361)
|...+.+|+-. | |.|+||.-.- +++|++...|+|.- +.+.+ ..++.|++.-.+-|.
T Consensus 159 ~ILmd~~g~P~-G--GkWnfD~eNR--k~~p~~~~~P~~~~~~~d~it~~v~~~V~~~f~~~~G 217 (224)
T PF04244_consen 159 GILMDEDGKPV-G--GKWNFDAENR--KKLPKGIPIPEPPRFEPDAITQEVIELVEKHFPDHPG 217 (224)
T ss_dssp TTTE-ETTEEG-G--GSS--GGGS---------TTS---------HHHHHHHHHHHHH-TTSSS
T ss_pred CccccCCCCcC-C--CcCCCChhhc--cCCCCCCCCCCCCCCCCChHHHHHHHHHHHHCCCCCC
Confidence 55565566543 2 5699998643 33444445444432 44444 588899887766653
No 3
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=35.33 E-value=1.1e+02 Score=27.56 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=70.3
Q ss_pred hhHHHHHHHhcCCCccEEEEecCCeeeecCCC-----CCCCCCCC-cccccccccCCchHHHHHhh----ccCCCCCCcc
Q 018081 138 PWAFVQWLEKATIEEEYILMAEPDHIFVKPLP-----NLAQGNHP-AGFPFFYIKPAEHEKIIRKF----YPEEMGPVTN 207 (361)
Q Consensus 138 P~A~~qWL~~a~i~e~~IlmlDpD~I~~rPl~-----~~~~~g~p-~A~~f~Yi~p~~~e~~l~k~----~pe~~gpv~~ 207 (361)
=+.+.+.+++ ..+.++|+++|+|...-.=.- .++.++.. +...|.+.........+... ++.-..-...
T Consensus 19 v~nL~~~~~~-~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 97 (175)
T PF13506_consen 19 VNNLAQGLEA-GAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGG 97 (175)
T ss_pred HHHHHHHHHh-hCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcC
Confidence 3456666666 588999999999997532110 01222222 22233333333222112111 1110000112
Q ss_pred cC-CCCCcceEEeHhHHHhhhHHHHHhHhhhccCcchhhhhhhHHHHHHHHHHHHhhCCccccccccccCCCCC
Q 018081 208 VD-PIGNSPVIIKKYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWD 280 (361)
Q Consensus 208 ~d-~vG~sP~im~~~DL~riAP~W~~~t~~vr~D~ea~~~~gWV~EMYaYs~AAA~~gV~H~l~~~lmiqPp~d 280 (361)
.. ..|+ -+++++++|+++- -...++ ..++|=|..+-..+..|.++.+....+.|..-.
T Consensus 98 ~~~~~G~-~m~~rr~~L~~~G-G~~~l~-------------~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~ 156 (175)
T PF13506_consen 98 APFAWGG-SMAFRREALEEIG-GFEALA-------------DYLADDYALGRRLRARGYRVVLSPYPVVQTSVP 156 (175)
T ss_pred CCceecc-eeeeEHHHHHHcc-cHHHHh-------------hhhhHHHHHHHHHHHCCCeEEEcchheeecccC
Confidence 33 3466 6899999998763 111111 478888899988999999999888766665444
No 4
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=22.91 E-value=76 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018081 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (361)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 165 (361)
|+.|+..-++.+ +.+||+++|+|.++-
T Consensus 75 k~~a~n~g~~~a--~~~~i~~~DaD~~~~ 101 (232)
T cd06437 75 KAGALAEGMKVA--KGEYVAIFDADFVPP 101 (232)
T ss_pred chHHHHHHHHhC--CCCEEEEEcCCCCCC
Confidence 677777777776 679999999999863
No 5
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=22.87 E-value=68 Score=28.65 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=21.6
Q ss_pred CCccEEEEecCCeeeecCCCCC---CCCCCCccccc
Q 018081 150 IEEEYILMAEPDHIFVKPLPNL---AQGNHPAGFPF 182 (361)
Q Consensus 150 i~e~~IlmlDpD~I~~rPl~~~---~~~g~p~A~~f 182 (361)
.+.+-||.+|+|+|+++++..+ ..+|.++|..-
T Consensus 97 ~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~ 132 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVE 132 (250)
T ss_dssp TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE
T ss_pred hhcCeEEEEcCCeeeecChhhhhcccchhhhccccc
Confidence 4569999999999999999642 33466655543
No 6
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=20.96 E-value=88 Score=29.87 Aligned_cols=29 Identities=7% Similarity=0.268 Sum_probs=22.9
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018081 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (361)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 165 (361)
|-.++...+++..-+.+||+++|+|.+.-
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~ 109 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMS 109 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Confidence 56677777776556779999999999864
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=19.36 E-value=1e+02 Score=25.93 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q 018081 10 SSFLLVLLALGFFF 23 (361)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (361)
+.|+||.|.|++++
T Consensus 4 K~~llL~l~LA~lL 17 (95)
T PF07172_consen 4 KAFLLLGLLLAALL 17 (95)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444433
No 8
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=19.17 E-value=93 Score=34.58 Aligned_cols=29 Identities=7% Similarity=0.233 Sum_probs=25.5
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018081 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (361)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 165 (361)
|.+.+.+|++...-+.|||+++|+|.++-
T Consensus 206 KaGNl~~~~~~~~~~~eyivvLDADs~m~ 234 (691)
T PRK05454 206 KAGNIADFCRRWGGAYDYMVVLDADSLMS 234 (691)
T ss_pred cHHHHHHHHHhcCCCcCEEEEEcCCCCCC
Confidence 67889999998777889999999999874
No 9
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=18.44 E-value=1.3e+02 Score=26.60 Aligned_cols=27 Identities=7% Similarity=0.335 Sum_probs=22.3
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018081 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (361)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 165 (361)
|..|+..-++.+ +.+||+++|+|-++-
T Consensus 65 ~~~a~n~g~~~a--~~d~v~~lD~D~~~~ 91 (235)
T cd06434 65 KRRALAEGIRHV--TTDIVVLLDSDTVWP 91 (235)
T ss_pred hHHHHHHHHHHh--CCCEEEEECCCceeC
Confidence 567777777776 689999999999884
No 10
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=17.84 E-value=93 Score=35.51 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.1
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeeee
Q 018081 137 RPWAFVQWLEKATIEEEYILMAEPDHIFV 165 (361)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~~ 165 (361)
|.+++.+.|+++ +.|||+++|+|++.-
T Consensus 327 KAGnLN~aL~~a--~GEyIavlDAD~ip~ 353 (852)
T PRK11498 327 KAGNINNALKYA--KGEFVAIFDCDHVPT 353 (852)
T ss_pred hHHHHHHHHHhC--CCCEEEEECCCCCCC
Confidence 678889999886 679999999999953
Done!