Query 018081
Match_columns 361
No_of_seqs 106 out of 125
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9a_X LAK160-P12; cationic, p 15.5 32 0.0011 21.4 -0.0 17 223-239 7-23 (26)
2 1r4g_A RNA polymerase alpha su 13.6 90 0.0031 22.7 1.9 19 335-353 34-52 (53)
3 1rrp_B Nuclear pore complex pr 13.5 75 0.0026 26.5 1.7 39 44-82 2-46 (134)
4 3ffy_A Putative tetrapyrrole ( 13.1 1.3E+02 0.0045 24.1 3.0 43 116-160 70-112 (115)
5 3zxs_A Cryptochrome B, rscryb; 13.0 2.4E+02 0.0082 29.0 5.6 79 264-348 131-224 (522)
6 3lk4_B F-actin-capping protein 10.9 1.9E+02 0.0064 27.7 3.7 56 278-351 50-106 (277)
7 2lk9_A Bone marrow stromal ant 10.6 1E+02 0.0034 20.8 1.2 22 7-28 8-29 (35)
8 4akr_B F-actin-capping protein 10.0 2.1E+02 0.0071 27.5 3.7 56 278-351 68-124 (290)
9 3aa0_B F-actin-capping protein 9.5 2.3E+02 0.0078 26.6 3.7 55 279-351 51-106 (244)
10 2ium_A Avian adenovirus CELO l 9.3 1.2E+02 0.004 28.2 1.6 21 99-121 38-58 (248)
No 1
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=15.52 E-value=32 Score=21.44 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=13.9
Q ss_pred HHhhhHHHHHhHhhhcc
Q 018081 223 LEEISPTWLNVSLRMKD 239 (361)
Q Consensus 223 L~riAP~W~~~t~~vr~ 239 (361)
|.++||+|-.++.+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 56899999999887764
No 2
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=13.55 E-value=90 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHhhcCC
Q 018081 335 PESVVRLVKMVNEATANIP 353 (361)
Q Consensus 335 ~~~~~~lv~~~nea~~~lp 353 (361)
.|+|-.+.+|+||-+..|-
T Consensus 34 dqEV~~~Memf~EDi~slt 52 (53)
T 1r4g_A 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 5678889999999988763
No 3
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=13.51 E-value=75 Score=26.48 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCcccccCccCCCCCCCCeeEEEEecCCCccc------chhhhhh
Q 018081 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (361)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrvm 82 (361)
+.||+++|.+..-.+....=.++|+.-|..|. .|.-|+.
T Consensus 2 ~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~ 46 (134)
T 1rrp_B 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred cccceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcE
Confidence 57999999877766667777899999998775 4777664
No 4
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=13.09 E-value=1.3e+02 Score=24.09 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=29.0
Q ss_pred CCceEeCCCCCCCCCcCcccCchhHHHHHHHhcCCCccEEEEecC
Q 018081 116 IPSFVVDPLPEGLDRGYIVLNRPWAFVQWLEKATIEEEYILMAEP 160 (361)
Q Consensus 116 iPTfvvdpl~~~~dd~Y~v~NKP~A~~qWL~~a~i~e~~IlmlDp 160 (361)
-|-+++.-+... ..-...-.-.-+.+|++...++.++|+++++
T Consensus 70 ~~v~v~relTk~--~E~~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 70 RQVSVSREISKI--HEETVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp CEEEEEEESSSS--CEEEEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred CEEEeeeccCCC--ceEEEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 344555444321 2234455567789999988999999999985
No 5
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=12.99 E-value=2.4e+02 Score=29.03 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=39.0
Q ss_pred CCcccccccc-ccCCCCCCC----CCCceEEEEeeccccc-------cCCccccCccceeeeccccCCCCCCCCCCCCCC
Q 018081 264 GVRHILRKDF-MLQPPWDPE----VGKRFILHYTYGCDYN-------LKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPP 331 (361)
Q Consensus 264 gV~H~l~~~l-miqPp~d~~----~g~~~ilHYtyG~~y~-------~~g~~~~gkig~W~FDKr~~~~~~p~~~l~~PP 331 (361)
||+-.+..+- -+.+|.+.. .|+++.+ +.+=-..- .+|+-. -|.|.||+-.-. ++|+.++.|+
T Consensus 131 gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~m-e~FYR~~Rkr~~iLm~~~~P~---GG~WnfD~~NRk--~~p~~~~~p~ 204 (522)
T 3zxs_A 131 PLPVRFLPDDRFLCPADEFARWTEGRKQLRM-EWFYREMRRRTGLLMEGDEPA---GGKWNFDTENRK--PAAPDLLRPR 204 (522)
T ss_dssp SSCEEEECCCCSSSCHHHHHHHHTTCSSCCH-HHHHHHHHHHHTTTEETTEEG---GGSSCCGGGSCC--CCCCCTTCCC
T ss_pred CCcEEEeCCCCcccCHHHHHHhhcCCCCeEe-eHHHHHHHHHhCcCCCCCCCC---CCccCccccccc--cCCCCCCCCC
Confidence 8887766653 456665543 3667766 32111110 122221 267999975433 3334444443
Q ss_pred C--CCchHHH-HHHHHHHHH
Q 018081 332 P--GVPESVV-RLVKMVNEA 348 (361)
Q Consensus 332 ~--~~~~~~~-~lv~~~nea 348 (361)
| ..+.+.+ ..++.|.+.
T Consensus 205 ~~~~~~d~~~~~v~~~v~~~ 224 (522)
T 3zxs_A 205 PLRFEPDAEVRAVLDLVEAR 224 (522)
T ss_dssp CCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHh
Confidence 3 2344444 356666544
No 6
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=10.91 E-value=1.9e+02 Score=27.69 Aligned_cols=56 Identities=30% Similarity=0.528 Sum_probs=32.5
Q ss_pred CCCCCCCCceEEEEeeccccccCCccccCccceeeeccccCCCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhc
Q 018081 278 PWDPEVGKRFILHYTYGCDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPPPGV-PESVVRLVKMVNEATAN 351 (361)
Q Consensus 278 p~d~~~g~~~ilHYtyG~~y~~~g~~~~gkig~W~FDKr~~~~~~p~~~l~~PP~~~-~~~~~~lv~~~nea~~~ 351 (361)
-.|.+.|..|++ |+||.+|. -|| --|++...| |++...+ ++.+.+|=-..|+|.+.
T Consensus 50 ~~d~~~~k~yL~-----CDYNRDgD-------SYR---SPwSNkY~P---pl~dg~~PS~~LRkLEi~aN~aFd~ 106 (277)
T 3lk4_B 50 ARDKVVGKDYLL-----CDYNRDGD-------SYR---SPWSNKYDP---PLEDGAMPSARLRKLEVEANNAFDQ 106 (277)
T ss_dssp EEETTTTEEEEE-----CGGGEETT-------EEE---CTTTCCEES---CCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred eEccccCCeeEe-----ecccCCCc-------ccc---CCCcCCcCC---CCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 467788888887 99998764 122 223333221 1222233 45555676677998764
No 7
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=10.62 E-value=1e+02 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=14.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhh
Q 018081 7 LGVSSFLLVLLALGFFFATYNL 28 (361)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (361)
|-+-..+|++++||+.++.|-.
T Consensus 8 g~Gvl~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 8 GIGILVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHhcchheEEee
Confidence 4455567777788888887743
No 8
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=10.00 E-value=2.1e+02 Score=27.53 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCCCCCCceEEEEeeccccccCCccccCccceeeeccccCCCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhc
Q 018081 278 PWDPEVGKRFILHYTYGCDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPPPGV-PESVVRLVKMVNEATAN 351 (361)
Q Consensus 278 p~d~~~g~~~ilHYtyG~~y~~~g~~~~gkig~W~FDKr~~~~~~p~~~l~~PP~~~-~~~~~~lv~~~nea~~~ 351 (361)
-.|++.|..|++ |+||.+|. -|| --|++...| |++...+ ++.+.+|=-..|+|.+.
T Consensus 68 ~~d~~~~k~yL~-----CDYNRDGD-------SYR---SPwSNkY~P---pl~dg~~PS~~LRkLEi~aN~aFd~ 124 (290)
T 4akr_B 68 AYDAVSKKDYLL-----CDYNRDAD-------SYR---SPWSNKYDP---PLSGACYPSSKLRDIEVQANEIFEI 124 (290)
T ss_dssp EEETTTTEEEEE-----CGGGEETT-------EEE---CTTTCCEES---CCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred eEccccCCeEEe-----ecccCCCc-------ccc---CCCCCCcCC---CCCCCCCChHHHHHHHHHHHHHHHH
Confidence 357778888877 99998764 132 133344322 2222334 44555576667998753
No 9
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=9.53 E-value=2.3e+02 Score=26.60 Aligned_cols=55 Identities=31% Similarity=0.535 Sum_probs=31.1
Q ss_pred CCCCCCCceEEEEeeccccccCCccccCccceeeeccccCCCCCCCCCCCCCCCCC-chHHHHHHHHHHHHhhc
Q 018081 279 WDPEVGKRFILHYTYGCDYNLKGELTYGKIGEWRFDKRSFLNGPPPKNLSLPPPGV-PESVVRLVKMVNEATAN 351 (361)
Q Consensus 279 ~d~~~g~~~ilHYtyG~~y~~~g~~~~gkig~W~FDKr~~~~~~p~~~l~~PP~~~-~~~~~~lv~~~nea~~~ 351 (361)
.|.+.|..|++ |+||.+|. -|| --|++...| +++...+ ++.+.+|--..|+|.+.
T Consensus 51 ~d~~~~k~yL~-----CdYNRDgD-------SYR---SPwSN~Y~P---~~~dg~~PS~~LR~LEi~aN~~Fd~ 106 (244)
T 3aa0_B 51 RDKVVGKDYLL-----CDYNRDGD-------SYR---SPWSNKYDP---PLEDGAMPSARLRKLEVEANNAFDQ 106 (244)
T ss_dssp EETTTTEEEEE-----CGGGEETT-------EEE---CTTTCCEES---CCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccccCCeeee-----ecccCCCc-------ccc---CCCCCCcCC---CCCCCCCChHHHHHHHHHHHHHHHH
Confidence 47788888876 99998764 122 123333222 1222334 44455566667988653
No 10
>2ium_A Avian adenovirus CELO long fibre; receptor-binding, trimeric proteins, viral fibres, beta-sandwich, fiber protein, viral protein; 1.6A {Avian adenovirus GAL1} PDB: 2iun_A
Probab=9.25 E-value=1.2e+02 Score=28.18 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=14.8
Q ss_pred CceEEecCCCCCCccCCCCceEe
Q 018081 99 KFTRILHSGKADNLMDEIPSFVV 121 (361)
Q Consensus 99 ~fTRILhsg~~D~LmdeiPTfvv 121 (361)
+.|||.||| |.|.|.-.-|-.
T Consensus 38 p~~~~~~~g--~nl~~sy~ifas 58 (248)
T 2ium_A 38 PEVATYHCG--DNLLESYDIFAS 58 (248)
T ss_dssp CCEEEEEEE--CTTCCCCCEEEE
T ss_pred ceeEEEeec--cchhhhHHHHhh
Confidence 469999997 667776555554
Done!