Query 018081
Match_columns 361
No_of_seqs 106 out of 125
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 09:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018081.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018081hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll2a_ c.68.1.14 (A:) Glycoge 18.2 27 0.0019 28.9 2.3 22 150-171 93-114 (263)
2 d1rrpb_ b.55.1.3 (B:) Nuclear 16.9 25 0.0018 27.1 1.7 39 44-82 2-46 (134)
3 d1r4ga_ a.8.5.1 (A:) RNA polym 14.1 40 0.0029 22.8 1.9 19 335-353 34-52 (53)
4 d1ga8a_ c.68.1.4 (A:) Galactos 13.8 37 0.0027 28.2 2.1 34 151-184 95-131 (282)
5 d1omza_ c.68.1.15 (A:) Alpha-1 11.3 57 0.0041 24.4 2.3 15 150-164 80-94 (265)
6 d1k1ga_ d.51.1.1 (A:) RNA spli 11.1 87 0.0063 24.0 3.4 18 55-72 62-79 (122)
7 d1z8ua1 a.7.11.1 (A:2-91) Alph 10.0 51 0.0037 24.5 1.4 20 216-235 29-48 (90)
8 d1lzia_ c.68.1.9 (A:) Glycosyl 9.3 63 0.0046 28.6 2.1 22 151-172 141-162 (283)
9 d1o7qa_ c.68.1.9 (A:) alpha-1, 9.2 62 0.0045 28.7 2.0 21 151-171 136-156 (287)
10 d1yfua1 b.82.1.20 (A:1-174) 3- 8.8 76 0.0056 26.3 2.3 15 134-148 3-17 (174)
No 1
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=18.20 E-value=27 Score=28.94 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=19.1
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 018081 150 IEEEYILMAEPDHIFVKPLPNL 171 (361)
Q Consensus 150 i~e~~IlmlDpD~I~~rPl~~~ 171 (361)
.+.+-||-||+|+|+++++..+
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 4568999999999999999764
No 2
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.94 E-value=25 Score=27.13 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=27.2
Q ss_pred CCcccccCccCCCCCCCCeeEEEEecCCCccc------chhhhhh
Q 018081 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (361)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrvm 82 (361)
+.|++++|.+..-......=-++|+.-|..|. .|+.|+.
T Consensus 2 f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGv 46 (134)
T d1rrpb_ 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred ccCcccCCCccceecCccCcEEEEEEeeEEEEEcCCCCceeeeeE
Confidence 57999999877644444445788888887754 4766665
No 3
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=14.08 E-value=40 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHhhcCC
Q 018081 335 PESVVRLVKMVNEATANIP 353 (361)
Q Consensus 335 ~~~~~~lv~~~nea~~~lp 353 (361)
.++|-.+.+|+||-+.+|-
T Consensus 34 d~EV~evMdlf~EDi~slt 52 (53)
T d1r4ga_ 34 DQEVKAVMELVEEDIESLT 52 (53)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 5678889999999998764
No 4
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=13.85 E-value=37 Score=28.25 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=23.7
Q ss_pred CccEEEEecCCeeeecCCCCC---CCCCCCccccccc
Q 018081 151 EEEYILMAEPDHIFVKPLPNL---AQGNHPAGFPFFY 184 (361)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~---~~~g~p~A~~f~Y 184 (361)
+-+-||-||+|+|+++++..+ .-++..+|+.-.+
T Consensus 95 ~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~ 131 (282)
T d1ga8a_ 95 DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDL 131 (282)
T ss_dssp SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECH
T ss_pred ccceEEEecCCEEEecchHHHHhcccccceeeeehhh
Confidence 346799999999999998653 3455555554333
No 5
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.32 E-value=57 Score=24.41 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=13.3
Q ss_pred CCccEEEEecCCeee
Q 018081 150 IEEEYILMAEPDHIF 164 (361)
Q Consensus 150 i~e~~IlmlDpD~I~ 164 (361)
.+.|||+.+|+|-++
T Consensus 80 a~ge~i~~lD~D~~~ 94 (265)
T d1omza_ 80 VETNAVLMVDDDTLI 94 (265)
T ss_dssp CCSSEEEEECTTEEE
T ss_pred CCcCEEEEeCcccCC
Confidence 477999999999887
No 6
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.06 E-value=87 Score=24.04 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=13.6
Q ss_pred CCCCCCCeeEEEEecCCC
Q 018081 55 GGGNSGMRFHVALTATDA 72 (361)
Q Consensus 55 ~~~~~~~~~H~vfSt~cs 72 (361)
........+|+.+|+++.
T Consensus 62 ~~~~~~epLHv~I~a~~~ 79 (122)
T d1k1ga_ 62 MLPGEDEPLHALVTANTM 79 (122)
T ss_dssp CSCCSSCCEEEEEEESSH
T ss_pred CCCCCCCCceEEEecCCh
Confidence 344467789999999873
No 7
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.01 E-value=51 Score=24.53 Aligned_cols=20 Identities=10% Similarity=0.414 Sum_probs=17.1
Q ss_pred eEEeHhHHHhhhHHHHHhHh
Q 018081 216 VIIKKYLLEEISPTWLNVSL 235 (361)
Q Consensus 216 ~im~~~DL~riAP~W~~~t~ 235 (361)
-+|..+||.-|..+|.++-.
T Consensus 29 ~~iseedMvtvV~DWvn~Yi 48 (90)
T d1z8ua1 29 ALVSEEDMVTVVEDWMNFYI 48 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 36999999999999999643
No 8
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.30 E-value=63 Score=28.65 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.2
Q ss_pred CccEEEEecCCeeeecCCCCCC
Q 018081 151 EEEYILMAEPDHIFVKPLPNLA 172 (361)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~~ 172 (361)
+.||++-+|+||+|..++....
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E~ 162 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVEI 162 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGGG
T ss_pred cCCEEEEeecceEEecccccEE
Confidence 4699999999999999997753
No 9
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.16 E-value=62 Score=28.73 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.7
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 018081 151 EEEYILMAEPDHIFVKPLPNL 171 (361)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~ 171 (361)
+.+|++-+|+||+|..++...
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E 156 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVE 156 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCeEEEEeCCceEecccccc
Confidence 459999999999999999764
No 10
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=8.76 E-value=76 Score=26.28 Aligned_cols=15 Identities=20% Similarity=0.833 Sum_probs=13.5
Q ss_pred ccCchhHHHHHHHhc
Q 018081 134 VLNRPWAFVQWLEKA 148 (361)
Q Consensus 134 v~NKP~A~~qWL~~a 148 (361)
.+.||+-|.+|++..
T Consensus 3 ~~~~P~n~~~Wieen 17 (174)
T d1yfua1 3 TYGAPFNFPRWIDEH 17 (174)
T ss_dssp TTCSCCCHHHHHHHT
T ss_pred cccCCccHHHHHHhh
Confidence 578999999999986
Done!