BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018082
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 33/107 (30%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWV---NCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
Y+ +IGIGTPP+ + V DTGS ++WV CI K C S +Y+ DSST K
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS-------MYESSDSSTYK 67
Query: 133 FVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVV 179
+G +G IYG G S TG+F QD V
Sbjct: 68 --------ENGTFGAI--------------IYGTG-SITGFFSQDSV 91
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 66
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 70
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 69
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
YY +IGIGTPP+ + V DTGS +WV +C R + + L+D DSS+ K
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWV---PSSKCSRLYTACVYHKLFDASDSSSYK 116
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKEC---------PRRSS----LGIELTL 122
Y+ KI IGTPP+++ V DTGS +WV I CK PR+SS LG L++
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSI 72
Query: 123 Y 123
+
Sbjct: 73 H 73
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
YY +IGIGTPP+ + V DTGS +WV I CK
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK 47
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 52 RQQRILAGVDLPLGGSSRPDGVGL-------YYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104
+Q +L+G + PL D V L Y+ +IG+GTPP+ + V DTGS +WV
Sbjct: 24 EEQPLLSGAN-PLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPS 82
Query: 105 IQC 107
+C
Sbjct: 83 AKC 85
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 30/184 (16%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
Y I TP + VD G +WV+C Q SST + V
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYV------------------SSTYRPVR 63
Query: 136 CDQEFCH--------GVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD 187
C C + GP C NT + E ++T G +DVV + G
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGS 123
Query: 188 LQ-TTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAH 246
T IF C +L + G+ G G++ ++ SQ AS+ ++ FA
Sbjct: 124 SSGRVVTVPRFIFSCAPT---SLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAM 180
Query: 247 CLDG 250
CL G
Sbjct: 181 CLSG 184
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 30/184 (16%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
Y I TP + VD G +WV+C Q SST + V
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYV------------------SSTYRPVR 63
Query: 136 CDQEFCH--------GVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD 187
C C + GP C NT + E ++T G +DVV + G
Sbjct: 64 CRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGS 123
Query: 188 LQ-TTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAH 246
T IF C +L + G+ G G++ ++ SQ AS+ ++ FA
Sbjct: 124 SSGRVVTVPRFIFSCAPT---SLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAM 180
Query: 247 CLDG 250
CL G
Sbjct: 181 CLSG 184
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 116/292 (39%), Gaps = 77/292 (26%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
Y A I IG+ + + V VDTGS +WV P S VT
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWV--------PDAS-------------------VT 46
Query: 136 CDQ-------EFCHG--VYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQY----- 181
CD+ +FC G +Y + + N P+ YGDGSS+ G +D V +
Sbjct: 47 CDKPRPGQSADFCKGKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASI 106
Query: 182 -DKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGV 240
+V D+ TS I G G + TNE A D ++ L + G +
Sbjct: 107 TKQVFADITKTSIPQG-ILGIGYK-------TNEAAGD--------YDNVPVTLKNQGVI 150
Query: 241 RK-MFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLD------FL 293
K ++ L+ N A G ++ V+K YS ++ AV V D
Sbjct: 151 AKNAYSLYLNSPNA----ATGQIIFGGVDKA-------KYSGSLIAVPVTSDRELRITLN 199
Query: 294 NLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQ-QPDLKVHTVH 344
+L + N ++DSGTT+ YL + V + ++ ++ + D + HT +
Sbjct: 200 SLKAVGKNINGNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHTFY 251
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKEC---------PRRSS 115
Y+ KI +GTPP+++ V DTGS WV I CK PR+SS
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS 64
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKEC---------PRRSS 115
Y+ KI +GTPP+++ V DTGS WV I CK PR+SS
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS 64
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE 109
YY +IGIGTPP+ + V DTGS +WV +C
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSR 50
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSST 130
YY ++ IGTP K + + DTGS +W+ C C R T YD SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQ------TKYDPNQSST 65
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC---------KECPRRSSLGIE 119
YY I IGTPP+ + V DTGS +WV+ C K PR+SS +E
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVE 66
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ +I IGTPP+++ V DTGS +WV + C+
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ 46
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 111/274 (40%), Gaps = 61/274 (22%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWV--NCIQCKECPRRSSLGIELTLYDIKDSSTGKF 133
Y + I +G+ + V +DTGS +WV + + C+ +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQ-------------------- 53
Query: 134 VTCDQEFC--HGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVS------ 185
D FC G Y + + N + P+ YGDG+++ G + +D + + +S
Sbjct: 54 ---DPNFCKNEGTYSPSSSSSSQNLNSPFSIEYGDGTTSQGTWYKDTIGFGGISITKQQF 110
Query: 186 GDLQTTSTNGSLIFGCGAR---QSGNLDSTNEEALD-GIIGFGKSNSSMISQLASSGGVR 241
D+ +TS + I G G + GN D+ + GII + + S+ A+SG +
Sbjct: 111 ADVTSTSVDQG-ILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYLNSRQATSGQI- 168
Query: 242 KMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFG 301
+F + G + A+ V + I++ V+V +N DV
Sbjct: 169 -IFGGVDNAKYSGTLIALP------------VTSDNELRIHLNTVKVAGQSINADVDV-- 213
Query: 302 VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQ 335
++DSGTT+ YL + V + ++S Q+
Sbjct: 214 -------LLDSGTTITYLQQGVADQVISAFNGQE 240
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS 46
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS 46
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSST 130
YY ++ IGTP K + + DTGS +W+ C C G T YD SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSGQTKYDPNQSST 65
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 46
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 46
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 46
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 46
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 14 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 46
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 90
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108
Y+ IGIGTP +D+ V DTGS +WV + C
Sbjct: 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 90
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 57/266 (21%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
Y A I +G+ + V VDTGS +WV + +C ++T D T F
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNV-DC--------QVTYSD----QTADF-- 58
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQY------DKVSGDLQ 189
C Q+ G Y + + + + P+ YGDGSS+ G +D V + ++V D+
Sbjct: 59 CKQK---GTYDPSGSSASQDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVD 115
Query: 190 TTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRK----MFA 245
+TS + I G G + TNE G S ++ L G + K ++
Sbjct: 116 STSIDQG-ILGVGYK-------TNEA--------GGSYDNVPVTLKKQGVIAKNAYSLYL 159
Query: 246 HCLDGINGGGIFAIGHVVQPEVNKTPL---VPNQPHYSINMTAVQVGLDFLNLPTDVFGV 302
+ D G IF G V + + + + V + I++ +V+V +N
Sbjct: 160 NSPDAATGQIIF--GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT------- 210
Query: 303 GDNKGTIIDSGTTLAYLPEMVYEPLV 328
DN ++DSGTT+ YL + + + ++
Sbjct: 211 -DNVDVLLDSGTTITYLQQDLADQII 235
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 57/266 (21%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
Y A I +G+ + V VDTGS +WV + +C ++T D T F
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNI-DC--------QVTYSD----QTADF-- 58
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQY------DKVSGDLQ 189
C Q+ G Y + + + + P+ YGDGSS+ G +D V + ++V D+
Sbjct: 59 CKQK---GTYDPSGSSASQDLNTPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVD 115
Query: 190 TTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRK----MFA 245
+TS + I G G + TNE G S ++ L G + K ++
Sbjct: 116 STSIDQG-ILGVGYK-------TNEA--------GGSYDNVPVTLKKQGVIAKNAYSLYL 159
Query: 246 HCLDGINGGGIFAIGHVVQPEVNKTPL---VPNQPHYSINMTAVQVGLDFLNLPTDVFGV 302
+ D G IF G V + + + + V + I++ +V+V +N
Sbjct: 160 NSPDSATGQIIF--GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT------- 210
Query: 303 GDNKGTIIDSGTTLAYLPEMVYEPLV 328
DN ++DSGTT+ YL + + + ++
Sbjct: 211 -DNVDVLLDSGTTITYLQQDLADQII 235
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 101/278 (36%), Gaps = 68/278 (24%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY I +GTPP+++ V +DTGS +WV +C +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGS------------------------LA 50
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVS---GDLQTTS 192
C F H Y + + YG G S GY QD + ++ D +
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 193 TNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM-------ISQLASSGGVRKMFA 245
+ L F G DGI+G G S+ + + K FA
Sbjct: 107 SEPGLTFAFG-------------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFA 153
Query: 246 HCL-----DGINGGGIFAIG---HVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297
L D NGG G + ++ P V + ++ + + +G ++ L
Sbjct: 154 FYLGDTSKDTENGGEATFGGIDESKFKGDITWLP-VRRKAYWEVKFEGIGLGDEYAEL-- 210
Query: 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQ 335
++ G ID+GT+L LP + E + ++I +++
Sbjct: 211 ------ESHGAAIDTGTSLITLPSGLAEMINAEIGAKK 242
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 101/278 (36%), Gaps = 68/278 (24%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY I +GTPP+++ V +DTGS +WV +C +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGS------------------------LA 50
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVS---GDLQTTS 192
C F H Y + + YG G S GY QD + ++ D +
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 193 TNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM-------ISQLASSGGVRKMFA 245
+ L F G DGI+G G S+ + + K FA
Sbjct: 107 SEPGLTFAFG-------------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFA 153
Query: 246 HCL-----DGINGGGIFAIG---HVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297
L D NGG G + ++ P V + ++ + + +G ++ L
Sbjct: 154 FYLGDTSKDTENGGEATFGGIDESKFKGDITWLP-VRRKAYWEVKFEGIGLGDEYAEL-- 210
Query: 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQ 335
++ G ID+GT+L LP + E + ++I +++
Sbjct: 211 ------ESHGAAIDTGTSLITLPSGLAEMINAEIGAKK 242
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 112/320 (35%), Gaps = 78/320 (24%)
Query: 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKF 133
GL++A + TP V VD + +WVNC Q Y K
Sbjct: 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQ---------------QYSSK------- 58
Query: 134 VTCDQEFCHGVYGGPLTDCT-ANT----SCPYLEIYGDGSSTTGYFV------------- 175
T FCH T C+ ANT SCP G +T G
Sbjct: 59 -TYQAPFCHS------TQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGEL 111
Query: 176 -QDVVQYDKVSGDLQTTS---TNGSLIFGCGAR---QSGNLDSTNEEALDGIIGFGKSNS 228
+DV+ G Q T +F C Q G +T G+ G G +
Sbjct: 112 GEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNT-----QGVAGLGHAPI 166
Query: 229 SMISQLASSGGVRKMFAHCL-------------DGINGGGIFAIGHVVQPEVNKTPL-VP 274
S+ +QLAS G+++ F CL D N F + ++ TPL +
Sbjct: 167 SLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFH-DLAFTPLTIT 225
Query: 275 NQPHYSINMTAVQVGLDF---LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKI 331
Q Y++ + ++++ LN + + GT+I + T L + VY+
Sbjct: 226 LQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVF 285
Query: 332 ISQQP-DLKVHTVHDEYTCF 350
Q P +V +V CF
Sbjct: 286 AQQLPKQAQVKSVAPFGLCF 305
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 101/278 (36%), Gaps = 68/278 (24%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY I +GTPP+++ V +DTGS +WV +C +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGS------------------------LA 50
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVS---GDLQTTS 192
C F H Y + + YG G S GY QD + ++ D +
Sbjct: 51 C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 193 TNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM-------ISQLASSGGVRKMFA 245
+ L F G DGI+G G S+ + + K FA
Sbjct: 107 SEPGLTFAFG-------------KFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFA 153
Query: 246 HCL-----DGINGGGIFAIG---HVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297
L D NGG G + ++ P V + ++ + + +G ++ L
Sbjct: 154 FYLGDTSKDTENGGEATFGGIDESKFKGDITWLP-VRRKAYWEVKFEGIGLGDEYAEL-- 210
Query: 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQ 335
++ G ID+GT+L LP + E + ++I +++
Sbjct: 211 ------ESHGAAIDTGTSLITLPSGLAEMINAEIGAKK 242
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC 107
Y+ I IG+PP+++ V DTGS +WV + C
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC 56
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 106/288 (36%), Gaps = 59/288 (20%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWV--NCIQCKECPRRSSLGIELTLYDIKDSSTGKF 133
Y +K+ +G+ + V +DTGS WV + QC GK
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQC-----------------------GKG 50
Query: 134 VTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVS------GD 187
V C G + + N + YGDGS++ G + +D V + VS D
Sbjct: 51 VDCK---SSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIAD 107
Query: 188 LQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMIS-QLASSGGVR----K 242
+ TS + I G G ++NE D N + L G +R
Sbjct: 108 VTQTSVDQG-ILGIGY-------TSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYS 159
Query: 243 MFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGV 302
++ + G IF G V + + LV Q S A+ + L +NL F
Sbjct: 160 LYLNSPSAETGTIIF--GGVDNAKYSG-KLVAEQVTSS---QALTISLASVNLKGSSFSF 213
Query: 303 GDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCF 350
GD G ++DSGTTL Y P L K ++ V D+Y F
Sbjct: 214 GD--GALLDSGTTLTYFPSDFAAQLADKAGAR----LVQVARDQYLYF 255
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 107/282 (37%), Gaps = 43/282 (15%)
Query: 57 LAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSL 116
LA VD G S R YY ++ IGTPP+ + VDTGS V
Sbjct: 1 LAMVDNLQGDSGRG-----YYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID----- 50
Query: 117 GIELTLYDIKDSST--GKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYF 174
T +D + SST K ++ G + G + + + T +
Sbjct: 51 ----TYFDTERSSTYRSKGFDVTVKYTQGSWTGFVGEDLVTIPKGF---------NTSFL 97
Query: 175 VQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234
V ++ + L NG I G S+ E D ++ + Q+
Sbjct: 98 VNIATIFESENFFLPGIKWNG--ILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQM 155
Query: 235 ASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNK-----TPLVPNQPHYSINMTAVQVG 289
+G G NGG + G ++P + K TP + + +Y I + +++G
Sbjct: 156 CGAG-----LPVAGSGTNGGSLVLGG--IEPSLYKGDIWYTP-IKEEWYYQIEILKLEIG 207
Query: 290 LDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKI 331
LNL + + I+DSGTTL LP+ V++ +V +
Sbjct: 208 GQSLNLDCREY---NADKAIVDSGTTLLRLPQKVFDAVVEAV 246
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 97/258 (37%), Gaps = 25/258 (9%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTN 194
+C G + G L TD + P + + + ++ T S +N
Sbjct: 91 ----YCQGKWEGELGTDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSN 134
Query: 195 GSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGG 254
I G + D + E D ++ + QL +G + L + G
Sbjct: 135 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGS 193
Query: 255 GIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSG 313
I I H + P + + + V+V ++ +L D +K +I+DSG
Sbjct: 194 MIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSG 250
Query: 314 TTLAYLPEMVYEPLVSKI 331
TT LP+ V+E V I
Sbjct: 251 TTNLRLPKKVFEAAVKSI 268
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 29/260 (11%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 70
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTT---GYFVQDVVQYDKVSGDLQTTS 192
Q G G TD + P + + + ++ T +F+Q
Sbjct: 71 YTQGKWEGELG---TDLVSIPHGPQVTVRANIAAITESDKFFIQ---------------G 112
Query: 193 TNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGIN 252
+N I G + D + E D ++ + QL +G + + L +
Sbjct: 113 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQ-SEVLASVG 171
Query: 253 GGGIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIID 311
G I I H + P + + + V+V ++ +L D +K +I+D
Sbjct: 172 GSMIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVD 228
Query: 312 SGTTLAYLPEMVYEPLVSKI 331
SGTT LP+ V+E V I
Sbjct: 229 SGTTNLRLPKKVFEAAVKSI 248
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 29/260 (11%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 73
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTT---GYFVQDVVQYDKVSGDLQTTS 192
Q G G TD + P + + + ++ T +F+Q
Sbjct: 74 YTQGKWEGELG---TDLVSIPHGPQVTVRANIAAITESDKFFIQ---------------G 115
Query: 193 TNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGIN 252
+N I G + D + E D ++ + QL +G + + L +
Sbjct: 116 SNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQ-SEVLASVG 174
Query: 253 GGGIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIID 311
G I I H + P + + + V+V ++ +L D +K +I+D
Sbjct: 175 GSMIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVD 231
Query: 312 SGTTLAYLPEMVYEPLVSKI 331
SGTT LP+ V+E V I
Sbjct: 232 SGTTNLRLPKKVFEAAVKSI 251
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 100/261 (38%), Gaps = 31/261 (11%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 71
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTT---GYFVQDVVQYDKVSGDLQTT 191
+ G + G L TD + P + + + ++ T +F+Q
Sbjct: 72 ----YTQGKWEGELGTDLVSIPHGPQVTVRANIAAITESDKFFIQ--------------- 112
Query: 192 STNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGI 251
+N I G + D + E D ++ + QL +G + + L +
Sbjct: 113 GSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLQQ-SEVLASV 171
Query: 252 NGGGIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTII 310
G I I H + P + + + V+V ++ +L D +K +I+
Sbjct: 172 GGSMIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIV 228
Query: 311 DSGTTLAYLPEMVYEPLVSKI 331
DSGTT LP+ V+E V I
Sbjct: 229 DSGTTNLRLPKKVFEAAVKSI 249
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 25/258 (9%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTN 194
+ G + G L TD + P + + + + + + DK +N
Sbjct: 91 ----YTQGAWAGELGTDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSN 134
Query: 195 GSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGG 254
I G + D + E D ++ + QL +G + L + G
Sbjct: 135 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGS 193
Query: 255 GIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSG 313
I I H + P + + + V+V ++ +L D +K +I+DSG
Sbjct: 194 MIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSG 250
Query: 314 TTLAYLPEMVYEPLVSKI 331
TT LP+ V+E V I
Sbjct: 251 TTNLRLPKKVFEAAVKSI 268
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 25/258 (9%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 96
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTN 194
+ G + G L TD + P + + + + + + DK +N
Sbjct: 97 ----YTQGAWAGELGTDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSN 140
Query: 195 GSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGG 254
I G + D + E D ++ + QL +G + L + G
Sbjct: 141 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGS 199
Query: 255 GIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSG 313
I I H + P + + + V+V ++ +L D +K +I+DSG
Sbjct: 200 MIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSG 256
Query: 314 TTLAYLPEMVYEPLVSKI 331
TT LP+ V+E V I
Sbjct: 257 TTNLRLPKKVFEAAVKSI 274
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 25/258 (9%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTN 194
+ G + G L TD + P + + + + + + DK +N
Sbjct: 91 ----YTQGAWAGELGTDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSN 134
Query: 195 GSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGG 254
I G + D + E D ++ + QL +G + L + G
Sbjct: 135 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGS 193
Query: 255 GIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSG 313
I I H + P + + + V+V ++ +L D +K +I+DSG
Sbjct: 194 MIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSG 250
Query: 314 TTLAYLPEMVYEPLVSKI 331
TT LP+ V+E V I
Sbjct: 251 TTNLRLPKKVFEAAVKSI 268
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 25/258 (9%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 86
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTN 194
+ G + G L TD + P + + + + + + DK +N
Sbjct: 87 ----YTQGAWAGELGTDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSN 130
Query: 195 GSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGG 254
I G + D + E D ++ + QL +G + L + G
Sbjct: 131 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGS 189
Query: 255 GIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSG 313
I I H + P + + + V+V ++ +L D +K +I+DSG
Sbjct: 190 MIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSG 246
Query: 314 TTLAYLPEMVYEPLVSKI 331
TT LP+ V+E V I
Sbjct: 247 TTNLRLPKKVFEAAVKSI 264
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 25/258 (9%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 110
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTN 194
+ G + G L TD + P + + + + + + DK +N
Sbjct: 111 ----YTQGAWAGELGTDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSN 154
Query: 195 GSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGG 254
I G + D + E D ++ + QL +G + L + G
Sbjct: 155 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGS 213
Query: 255 GIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSG 313
I I H + P + + + V+V ++ +L D +K +I+DSG
Sbjct: 214 MIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSG 270
Query: 314 TTLAYLPEMVYEPLVSKI 331
TT LP+ V+E V I
Sbjct: 271 TTNLRLPKKVFEAAVKSI 288
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 114/310 (36%), Gaps = 24/310 (7%)
Query: 24 SNHGV-FSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGI 82
+ HG+ ++ G L L +E D ++ G + + + R YY ++ +
Sbjct: 23 TQHGIRLPLRSGLGGAPLGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQGYYVEMTV 82
Query: 83 GTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCH 142
G+PP+ + VDTGS V R + T D++ G +V Q
Sbjct: 83 GSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVPYTQGKWE 139
Query: 143 GVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCG 202
G G TD + P + + + + + + DK +N I G
Sbjct: 140 GELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNWEGILGLA 184
Query: 203 ARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIF-AIGH 261
+ D + E D ++ + QL +G + L + G I I H
Sbjct: 185 YAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSMIIGGIDH 243
Query: 262 VVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPE 321
+ P + + + V+V ++ +L D +K +I+DSGTT LP+
Sbjct: 244 SLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPK 300
Query: 322 MVYEPLVSKI 331
V+E V I
Sbjct: 301 KVFEAAVKSI 310
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 114/310 (36%), Gaps = 24/310 (7%)
Query: 24 SNHGV-FSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGI 82
+ HG+ ++ G L L +E D ++ G + + + R YY ++ +
Sbjct: 24 TQHGIRLPLRSGLGGAPLGLRLPRETDEEPEEPGRRGSFVEMVDNLRGKSGQGYYVEMTV 83
Query: 83 GTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCH 142
G+PP+ + VDTGS V R + T D++ G +V Q
Sbjct: 84 GSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVPYTQGKWE 140
Query: 143 GVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCG 202
G G TD + P + + + + + + DK +N I G
Sbjct: 141 GELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNWEGILGLA 185
Query: 203 ARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIF-AIGH 261
+ D + E D ++ + QL +G + L + G I I H
Sbjct: 186 YAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSMIIGGIDH 244
Query: 262 VVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPE 321
+ P + + + V+V ++ +L D +K +I+DSGTT LP+
Sbjct: 245 SLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPK 301
Query: 322 MVYEPLVSKI 331
V+E V I
Sbjct: 302 KVFEAAVKSI 311
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 114/310 (36%), Gaps = 24/310 (7%)
Query: 24 SNHGV-FSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGI 82
+ HG+ ++ G L L +E D ++ G + + + R YY ++ +
Sbjct: 24 TQHGIRLPLRSGLGGAPLGLRLPRETDEEPEEPGKKGSFVEMVDNLRGKSGQGYYVEMTV 83
Query: 83 GTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCH 142
G+PP+ + VDTGS V R + T D++ G +V Q
Sbjct: 84 GSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVPYTQGKWE 140
Query: 143 GVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCG 202
G G TD + P + + + + + + DK +N I G
Sbjct: 141 GELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNWEGILGLA 185
Query: 203 ARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIF-AIGH 261
+ D + E D ++ + QL +G + L + G I I H
Sbjct: 186 YAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSMIIGGIDH 244
Query: 262 VVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPE 321
+ P + + + V+V ++ +L D +K +I+DSGTT LP+
Sbjct: 245 SLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGTTNLRLPK 301
Query: 322 MVYEPLVSKI 331
V+E V I
Sbjct: 302 KVFEAAVKSI 311
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 79
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 80 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 124
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 125 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 183
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 184 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 240
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 241 TNLRLPKKVFEAAVKSI 257
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 91 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 135
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 136 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 194
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 195 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 251
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 252 TNLRLPKKVFEAAVKSI 268
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 91 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 135
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 136 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 194
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 195 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 251
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 252 TNLRLPKKVFEAAVKSI 268
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 91
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 92 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 136
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 137 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 195
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 196 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 252
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 253 TNLRLPKKVFEAAVKSI 269
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 96/257 (37%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 86
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 87 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 131
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 132 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 190
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 191 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 247
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V+ I
Sbjct: 248 TNLRLPKKVFEAAVASI 264
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 91 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 135
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 136 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 194
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 195 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 251
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 252 TNLRLPKKVFEAAVKSI 268
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 79
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 80 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 124
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 125 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 183
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 184 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 240
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 241 TNLRLPKKVFEAAVKSI 257
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 86
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 87 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 131
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 132 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 190
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 191 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 247
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 248 TNLRLPKKVFEAAVKSI 264
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 91
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 92 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 136
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 137 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 195
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 196 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 252
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 253 TNLRLPKKVFEAAVKSI 269
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 76
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 77 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 121
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 122 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 180
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 181 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 237
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 238 TNLRLPKKVFEAAVKSI 254
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 91 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 135
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 136 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 194
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 195 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 251
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 252 TNLRLPKKVFEAAVKSI 268
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 76
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 77 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 121
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 122 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 180
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 181 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 237
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 238 TNLRLPKKVFEAAVKSI 254
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 88
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 89 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 133
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 134 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 192
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 193 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 249
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 250 TNLRLPKKVFEAAVKSI 266
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 93
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 94 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 138
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 139 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 197
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 198 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 254
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 255 TNLRLPKKVFEAAVKSI 271
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLR---KGVYVP 86
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 87 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 131
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 132 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 190
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 191 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 247
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 248 TNLRLPKKVFEAAVKSI 264
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 89
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 90 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 134
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 135 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 193
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 194 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 250
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 251 TNLRLPKKVFEAAVKSI 267
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 73
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 74 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 118
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 119 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 177
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 178 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 234
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 235 TNLRLPKKVFEAAVKSI 251
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 74
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 75 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 119
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 120 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 178
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 179 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 235
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 236 TNLRLPKKVFEAAVKSI 252
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 76
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 77 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 121
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 122 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 180
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 181 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 237
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 238 TNLRLPKKVFEAAVKSI 254
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 74
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 75 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 119
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 120 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 178
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 179 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 235
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 236 TNLRLPKKVFEAAVKSI 252
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 75
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 76 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 120
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 121 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 179
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 180 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 236
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 237 TNLRLPKKVFEAAVKSI 253
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 110
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 111 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 155
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 156 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 214
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 215 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 271
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 272 TNLRLPKKVFEAAVKSI 288
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 77
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 78 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 122
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 123 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 181
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 182 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 238
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 239 TNLRLPKKVFEAAVKSI 255
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 74
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 75 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 119
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 120 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 178
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 179 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 235
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 236 TNLRLPKKVFEAAVKSI 252
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 89
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 90 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 134
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 135 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 193
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 194 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 250
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 251 TNLRLPKKVFEAAVKSI 267
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 87
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 88 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 132
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 133 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 191
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 192 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 248
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 249 TNLRLPKKVFEAAVKSI 265
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 71
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 72 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 116
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 117 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 175
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 176 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 232
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 233 TNLRLPKKVFEAAVKSI 249
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 74
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 75 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 119
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 120 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 178
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 179 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 235
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 236 TNLRLPKKVFEAAVKSI 252
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 86
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 87 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 131
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 132 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 190
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 191 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 247
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 248 TNLRLPKKVFEAAVKSI 264
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 94/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 74
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + ++ T S +N
Sbjct: 75 YTQGKWEGELG---TDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSNW 119
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 120 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 178
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 179 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 235
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 236 TNLRLPKKVFEAAVKSI 252
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 23/257 (8%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 89
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
Q G G TD + P + + + + + + DK +N
Sbjct: 90 YTQGKWEGELG---TDLVSIPHGPNVTVRAN--------IAAITESDK----FFINGSNW 134
Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGG 255
I G + D + E D ++ + QL +G + L + G
Sbjct: 135 EGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGSM 193
Query: 256 IF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314
I I H + P + + + V+V ++ +L D +K +I+DSGT
Sbjct: 194 IIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSGT 250
Query: 315 TLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 251 TNLRLPKKVFEAAVKSI 267
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 95/258 (36%), Gaps = 25/258 (9%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
YY ++ +G+PP+ + VDTGS V R + T D++ G +V
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRK---GVYVP 90
Query: 136 CDQEFCHGVYGGPL-TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTN 194
+ G + G L TD + P + + + ++ T S +N
Sbjct: 91 ----YTQGAWAGELGTDLVSIPHGPNVTVRANIAAITE------------SDKFFINGSN 134
Query: 195 GSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGG 254
I G + D + E D ++ + QL +G + L + G
Sbjct: 135 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQ-SEVLASVGGS 193
Query: 255 GIF-AIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSG 313
I I H + P + + + V+V ++ +L D +K +I+DSG
Sbjct: 194 MIIGGIDHSLY--TGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDK-SIVDSG 250
Query: 314 TTLAYLPEMVYEPLVSKI 331
T LP+ V+E V I
Sbjct: 251 CTNLRLPKKVFEAAVKSI 268
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC 107
Y + IGTP +D+Y+ DTGS WV C
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGC 51
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWV---NCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
Y + IGTP +D+ + DTGS WV C + + C + +D SST K
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGC-------VGSRFFDPSASSTFK 72
Query: 133 FVTCDQEFCHGVYGG 147
+ +G G
Sbjct: 73 ATNYNLNITYGTGGA 87
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104
Y +G+G+P Y + VDTGS W+
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGA 42
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLG 117
Y + IGTP + + DTGS +WV E P+ S+ G
Sbjct: 17 YITSVSIGTPAQVLPLDFDTGSSDLWV---FSSETPKSSATG 55
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 25/139 (17%)
Query: 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
Y A I +G+ + V +DTGS +WV EC S T F
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDA-ECQVTYS------------GQTNNF-- 58
Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVS------GDLQ 189
C QE G + + N + + YGD +S+ G F +D V + +S D+
Sbjct: 59 CKQE---GTFDPSSSSSAQNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVT 115
Query: 190 TTSTN-GSLIFGCGARQSG 207
TTS + G + G A ++G
Sbjct: 116 TTSVDQGIMGIGFTADEAG 134
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKF- 133
+YY + IG + + DTGS +WV QC ++ LYD S T +
Sbjct: 22 MYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTK-----NLYDSNKSKTYEKD 76
Query: 134 -VTCDQEFCHGVYGGPLTD---CTANTSCPY 160
+ + G G + AN S PY
Sbjct: 77 GTKVEMNYVSGTVSGFFSKDIVTIANLSFPY 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,377,996
Number of Sequences: 62578
Number of extensions: 505420
Number of successful extensions: 1365
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 203
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)