BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018083
(361 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27473|IFI44_PANTR Interferon-induced protein 44 OS=Pan troglodytes GN=IFI44 PE=1 SV=1
Length = 444
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 35/132 (26%)
Query: 120 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE----YTIPRGS 175
+LL+GP G+GKSS N + VF+ VT+ + VG T + E Y+I G
Sbjct: 189 ILLLGPIGAGKSSFFNSVRSVFQ--------GHVTHQALVGTNTTGISEKYRTYSIRDGK 240
Query: 176 NS----FSLYDTRSLSDD----ASDNINMI---------KLWIMEGVR--HGELVIRRSD 216
+ F L D+ LS+ D+I+ I + ME ++ H + + D
Sbjct: 241 DGKYLPFILCDSLGLSEKEGGLCMDDISYILNGNIRDRYQFNPMESIKLNHHDYI----D 296
Query: 217 SSSLRNRMRCKA 228
S SL++R+ C A
Sbjct: 297 SPSLKDRIHCVA 308
>sp|Q8TCB0|IFI44_HUMAN Interferon-induced protein 44 OS=Homo sapiens GN=IFI44 PE=2 SV=2
Length = 444
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 41/250 (16%)
Query: 120 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE----YTIPRGS 175
+LL+GP G+GKSS N + VF+ VT+ + VG T + E Y+I G
Sbjct: 189 ILLLGPIGAGKSSFFNSVRSVFQ--------GHVTHQALVGTNTTGISEKYRTYSIRDGK 240
Query: 176 NS----FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231
+ F L D+ LS+ +I+ G IR + ++ H
Sbjct: 241 DGKYLPFILCDSLGLSEKEGGLCRDDIFYILNG------NIRDRYQFNPMESIKLNHHDY 294
Query: 232 GCEPSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIV-ATTFNCPYLSFRDDKPVV 289
PS+ +++ V FV D ++ S + +++ ++V A + L+ D
Sbjct: 295 IDSPSLKDRIHCVAFVFDASSIQYFSSQMIVKIKRIRRELVNAGVVHVALLTHVDSMD-- 352
Query: 290 VVTHGDLLSLTDRARIRTYLGEL---LGIPPAKQIFDIPESS--------DPENELIIVD 338
++T GDL+ + +R+ L E+ LG + DI S DP +++I+
Sbjct: 353 LITKGDLIEIERCEPVRSKLEEVQRKLGFALS----DISVVSNYSSEWELDPVKDVLILS 408
Query: 339 MLRYCLEHAD 348
LR L AD
Sbjct: 409 ALRRMLWAAD 418
>sp|Q9FNP1|PEX1_ARATH Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1
PE=2 SV=2
Length = 1130
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 105 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 145
GM S + +P +L+ GP GSGK+ L +K FE K
Sbjct: 581 AGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFEEQK 621
>sp|Q8R9I2|PSTB2_THETN Phosphate import ATP-binding protein PstB 2 OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=pstB2 PE=3 SV=1
Length = 249
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 97/247 (39%), Gaps = 56/247 (22%)
Query: 113 DVPKTTSLLLIGPKGSGKSSLV---NRISKVFENDKFA-----------SERAQVTYNSS 158
DV + L LIGP G GKS+ + NR++ + E K + E +
Sbjct: 25 DVEPNSVLALIGPSGCGKSTFIRTLNRMNDLIEGVKISGTVLLDGKDIYKEVDVIELRKK 84
Query: 159 VG-----DGTYFLQEY-TIPRGSNSFSLYDTRSLSDDASDNINMIKLW--IMEGVRHGEL 210
VG + + Y + G + D R+L++ ++ LW + + + H L
Sbjct: 85 VGMVFQKPNPFPMTVYDNVAYGPRIHGIRDKRTLNEIVEKSLKAAALWDEVKDRLHHSAL 144
Query: 211 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 270
S S + R+ C A + EP VI ++ +D ++ +K E +++K+Y
Sbjct: 145 ----SLSGGQQQRL-CIARTLAVEPEVIL-MDEPTSALDPISTMKIEELIEELKKKYT-- 196
Query: 271 VATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIP 325
+++VTH ++ R+ Y GEL+ P Q+F P
Sbjct: 197 -----------------IIIVTH----NMQQAGRVSDYTAFFLNGELVEWGPTDQVFYNP 235
Query: 326 ESSDPEN 332
+ E+
Sbjct: 236 KDKRTED 242
>sp|A8FD80|CLPY_BACP2 ATP-dependent protease ATPase subunit ClpY OS=Bacillus pumilus
(strain SAFR-032) GN=clpY PE=3 SV=1
Length = 466
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 69 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 128
RE+++ DQ IG L DAK + + ++ L D VPK ++L+IGP G
Sbjct: 9 REIVEKLDQYI--IGQL-DAKKAVAVALRNRYRRSLLHDKLKDEVVPK--NILMIGPTGV 63
Query: 129 GKSSLVNRISKV 140
GK+ + RI+K+
Sbjct: 64 GKTEIARRIAKI 75
>sp|Q5A4Q1|KAD12_CANAL Adenylate kinase 1-2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ADK1-2 PE=3 SV=1
Length = 249
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 160
DVPK+ ++LIGP GSGK + + + F A+ RAQV +++G
Sbjct: 29 DVPKSVRMVLIGPPGSGKGTQAPNLKEKFCACHLATGDMLRAQVAAKTALG 79
>sp|Q8BV66|IFI44_MOUSE Interferon-induced protein 44 OS=Mus musculus GN=Ifi44 PE=2 SV=1
Length = 422
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 108 TLSDY----DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142
L DY D+ + T +LL+GP G+GKSS VN + VF+
Sbjct: 168 ALRDYKPYGDLVQQTRVLLLGPIGAGKSSFVNSVKSVFK 206
>sp|Q2SS06|PSTB_MYCCT Phosphate import ATP-binding protein PstB OS=Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 /
NCTC 10154) GN=pstB PE=3 SV=1
Length = 269
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 59/240 (24%)
Query: 122 LIGPKGSGKSSL---VNRIS------------KVFENDKFASERAQVTYNSSVGDGTYFL 166
IGP G GK++L +NR++ K+F+ D FAS+ + V G F
Sbjct: 53 FIGPSGCGKTTLLKSINRLNDLIDGVKMSGAIKIFDKDIFASDIDITKLRTEV--GMVFQ 110
Query: 167 QEYTIPRGSNSFSLYDTRSL--SDDAS-DNI---NMIKLWIMEGVRHGELVIRRSDSSSL 220
+ P +Y RSL D A D I ++IK + + V+ I S + L
Sbjct: 111 KPNPFPISIYDNVVYGLRSLGIKDKAILDQICEESLIKAALWDEVKD----ILNSPALGL 166
Query: 221 ---RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC 277
+ + C A I +P ++ ++ +D +A LK E D++K Y
Sbjct: 167 SGGQQQRLCIARAIAMKPKILL-MDEPTSALDPIATLKVEELVLDLKKDYT--------- 216
Query: 278 PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSDPEN 332
+V+VTH SL RI Y GEL+ K+IF P+ EN
Sbjct: 217 ----------IVMVTH----SLQQATRISDYTAYFLKGELIEFNKTKKIFTNPKDRRTEN 262
>sp|Q53G44|IF44L_HUMAN Interferon-induced protein 44-like OS=Homo sapiens GN=IFI44L PE=2
SV=3
Length = 452
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 109/257 (42%), Gaps = 40/257 (15%)
Query: 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 172
D+ +LL+GP GSGKSS N + +F Q S + T + Y++
Sbjct: 193 DLVSEIRILLVGPVGSGKSSFFNSVKSIFH----GHVTGQAVVGSDITSITERYRIYSVK 248
Query: 173 RGSNS----FSLYDTRSLSDDASDNINMIKLWIMEGVRH---GELVIRRSDSSSLRNRMR 225
G N F L DT L D ++ + M+ + H G + R +S R +
Sbjct: 249 DGKNGKSLPFMLCDTMGL--DGAEGAGL----CMDDIPHILKGCMPDRYQFNS--RKPIT 300
Query: 226 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNC-----PY 279
+ PS+ +++ V +V+D + S++ S + + Q+ NC
Sbjct: 301 PEHSTFITSPSLKDRIHCVAYVLD----INSIDNLYSKMLAKVKQVHKEVLNCGIAYVAL 356
Query: 280 LSFRDDKPVVVVTHGDLL----SLTDRARIRTYLGELLGIPPAKQIFDIPESS----DPE 331
L+ DD V+ + L S+T ++R+ + ++LGIP + + +S DP
Sbjct: 357 LTKVDDCSEVL--QDNFLNMSRSMTSQSRVMN-VHKMLGIPISNILMVGNYASDLELDPM 413
Query: 332 NELIIVDMLRYCLEHAD 348
+++I+ LR L AD
Sbjct: 414 KDILILSALRQMLRAAD 430
>sp|A5ULP3|THIM_METS3 Hydroxyethylthiazole kinase OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=thiM PE=3 SV=1
Length = 287
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 68 FREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 127
EV+ D L IG L+ E V M +S K + +++ P G
Sbjct: 57 VAEVVSIADALVINIGKLSH--------------EQVEAMKISSAQANKINTPVILDPVG 102
Query: 128 SGKSSLVNRIS-KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 174
G S L N+++ ++ EN K A+ R +T ++ T + E +G
Sbjct: 103 VGISQLRNKVTLEIIENYKLAAIRGNITEIKTIAKLTGIISESNTAKG 150
>sp|Q16BC5|PHNC1_ROSDO Phosphonates import ATP-binding protein PhnC 1 OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=phnC1
PE=3 SV=1
Length = 263
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142
D ++P+ L LIGP G+GKS+L+ ++++ E
Sbjct: 22 DLEIPQGQVLALIGPSGAGKSTLIRCVNRLVE 53
>sp|Q5WET8|PSTB1_BACSK Phosphate import ATP-binding protein PstB 1 OS=Bacillus clausii
(strain KSM-K16) GN=pstB1 PE=3 SV=1
Length = 260
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 281 SFRDDKPVVVVTHGDLLSLTDRARIR-----TYLGELLGIPPAKQIFDIPESSDPEN 332
S RD +V+VTH ++ ARI Y+GEL+ I P ++IF PE E+
Sbjct: 201 SLRDSYTIVIVTH----NMQQAARISDETAFFYMGELVEIGPTQRIFSNPEHKRTED 253
>sp|Q7NNG3|PSTB2_GLOVI Phosphate import ATP-binding protein PstB 2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=pstB2 PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 70 EVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 129
E LQ+ DQ+ T+ G +N Y ++N+ D+P + +IGP G G
Sbjct: 4 EQLQA-DQVPTKAGIAYKVRNMAFFYGTKKALDNI------SVDLPAKSVTAIIGPSGCG 56
Query: 130 KSSLVNRISKVFEND 144
KS+ + ++++ E +
Sbjct: 57 KSTFIKALNRIAEAE 71
>sp|O67356|CLPX_AQUAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aquifex
aeolicus (strain VF5) GN=clpX PE=3 SV=1
Length = 412
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 105 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGD 161
G++L D ++ K+ ++LLIGP GSGK+ L ++K+ N FA ++ +T VG+
Sbjct: 99 AGLSLDDVELEKS-NILLIGPTGSGKTLLARTLAKIL-NVPFAIADATSLTEAGYVGE 154
>sp|Q46Y89|MSBA_CUPPJ Lipid A export ATP-binding/permease protein MsbA OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=msbA PE=3
SV=1
Length = 590
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142
D VP + L+GP GSGK++LVN + + F+
Sbjct: 368 DIRVPAGEVVALVGPSGSGKTTLVNLVPRFFD 399
>sp|Q0D9V6|STAR1_ORYSJ Protein STAR1 OS=Oryza sativa subsp. japonica GN=STAR1 PE=1 SV=1
Length = 346
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142
D DVP+ + +IGP GSGKS+L+ +++++E
Sbjct: 133 DLDVPRGVVVGVIGPSGSGKSTLLRALNRLWE 164
>sp|Q2RNA1|HSLU_RHORT ATP-dependent protease ATPase subunit HslU OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=hslU PE=3 SV=1
Length = 435
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 69 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 128
RE++ D+ I DAK + W L D +PK ++L+IGP G
Sbjct: 7 REIVSELDR---HIVGQKDAKRAVAIALRNRWRRQQLSEALRDEVLPK--NILMIGPTGV 61
Query: 129 GKSSLVNRISKVFENDKFASERAQVTYNSSVG 160
GK+ + R++K+ + E + T VG
Sbjct: 62 GKTEIARRLAKLAQAPFLKVEATKFTEVGYVG 93
>sp|Q6MH12|CLPX_BDEBA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=clpX PE=3 SV=1
Length = 431
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 105 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGD 161
GG +D ++ K+ ++LLIGP GSGK+ L I+KV N FA ++ +T VG+
Sbjct: 101 GGKKSADVEMQKS-NILLIGPTGSGKTLLAQTIAKVL-NVPFAMADATTLTEAGYVGE 156
>sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding protein sll0182
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll0182 PE=3 SV=1
Length = 661
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 75 YDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134
++ + TRIG+ +N LS P + V ++L+ V LL++GP GSGKSSL+
Sbjct: 442 HNVITTRIGATVALENVTLS-PPNSSRILVRDLSLA---VAPGNHLLIMGPSGSGKSSLL 497
Query: 135 NRISKVFENDKFASERAQVT 154
I+ ++++ + ER ++
Sbjct: 498 RAIAGLWDSGQGTIERPELA 517
>sp|Q28W08|HSLU_JANSC ATP-dependent protease ATPase subunit HslU OS=Jannaschia sp.
(strain CCS1) GN=hslU PE=3 SV=1
Length = 438
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 69 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 128
RE++ D+ I +DAK + W G L D PK ++L+IGP G
Sbjct: 7 REIVSELDRF---IIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPK--NILMIGPTGV 61
Query: 129 GKSSLVNRISKVFENDKFASERAQVTYNSSVG 160
GK+ + R++K+ + E + T VG
Sbjct: 62 GKTEISRRLAKLAKAPFIKVEATKFTEVGYVG 93
>sp|Q5V225|PSTB1_HALMA Phosphate import ATP-binding protein PstB 1 OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=pstB1 PE=3 SV=1
Length = 299
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 28/216 (12%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSL---VNRISKVFENDKFASE---RAQVTYNSSVGD--- 161
D +P+ +IGP G GKS+ +NR++ + + + + + Y++ V
Sbjct: 73 DLAIPEKQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGDLHFEGKNVYDADVDPVAL 132
Query: 162 ----GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL---VIRR 214
G F P+ S+YD + D I + ++ L V +
Sbjct: 133 RRRIGMVFQHPNPFPK-----SIYDNVAYGLRIQDQTENIDEKVETALKRAALWDEVKDQ 187
Query: 215 SDSSSL-----RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 269
D S+L + + C A I +P VI ++ +D +A K + ++ +++
Sbjct: 188 LDKSALDLSGGQQQRLCIARAIAVDPDVIL-MDEPASALDPIATSKIEDLIEELAEEFT- 245
Query: 270 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARI 305
+V T N + DK V +T G+L+ D +I
Sbjct: 246 VVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 281
>sp|C4ZGF5|CLPX_EUBR3 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Eubacterium
rectale (strain ATCC 33656 / VPI 0990) GN=clpX PE=3 SV=1
Length = 423
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF 146
D K+LS + V SD ++ K+ ++L++GP GSGK+ L +++V N F
Sbjct: 83 DQAKKVLSVAVYNHYKRVLAGDTSDVELQKS-NILMLGPTGSGKTLLAQTLARVI-NVPF 140
Query: 147 A-SERAQVTYNSSVGDGT-----YFLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIK 198
A ++ +T VG+ +Q +Y I R + D S+N+++ +
Sbjct: 141 AIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGIIYIDEIDKITKKSENVSITR 200
Query: 199 LWIMEGVRHGELVIRRSDSSSL 220
EGV+ L I +S+
Sbjct: 201 DVSGEGVQQALLKILEGTEASV 222
>sp|Q9HS13|PSTB1_HALSA Phosphate import ATP-binding protein PstB 1 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=pstB1 PE=3 SV=1
Length = 281
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYNSSVGD- 161
D D+P+ +IGP G GKS+ + I+++ ND+ + R Y+++V
Sbjct: 55 DIDIPEQQVTAIIGPSGCGKSTFLRCINRM--NDRIDAARIDGDLTLRGTNVYDAAVDPV 112
Query: 162 ------GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL---VI 212
G F + P+ S+YD + + D + + +R L V
Sbjct: 113 ALRRRVGMVFQEPNPFPK-----SIYDNVAYGLEIQDVEGDHDEIVEQSLRRAALWDEVS 167
Query: 213 RRSDSSSL-----RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 267
+ DSS + + + C A I +P V+ ++ +D +A + + ++ ++Y
Sbjct: 168 HQLDSSGVALSGGQQQRLCIARAIAPDPEVLL-MDEPASALDPVATSQVEDLIEELAEEY 226
Query: 268 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARI 305
+V T N + DK V +T G L+ D +I
Sbjct: 227 T-VVIVTHNMQQAARISDKTAVFLTGGKLVEFGDTDQI 263
>sp|Q31TP8|PHNC_SHIBS Phosphonates import ATP-binding protein PhnC OS=Shigella boydii
serotype 4 (strain Sb227) GN=phnC PE=3 SV=1
Length = 262
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 147
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q83P97|PHNC_SHIFL Phosphonates import ATP-binding protein PhnC OS=Shigella flexneri
GN=phnC PE=3 SV=2
Length = 262
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 147
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q0SXV5|PHNC_SHIF8 Phosphonates import ATP-binding protein PhnC OS=Shigella flexneri
serotype 5b (strain 8401) GN=phnC PE=3 SV=1
Length = 262
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 147
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q4QK92|PSTB_HAEI8 Phosphate import ATP-binding protein PstB OS=Haemophilus influenzae
(strain 86-028NP) GN=pstB PE=3 SV=1
Length = 255
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 17/227 (7%)
Query: 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL---QEYT 170
+ K IGP G GKS+L+ +++FE + +++A N DG L + +
Sbjct: 31 IAKNKVTAFIGPSGCGKSTLLRSFNRMFE--LYPNQKATGEINL---DGENLLTTKMDIS 85
Query: 171 IPRGSNSFSLYDTRSLSDDASDNINM-IKLW-IMEGVRHGELVIRRSDSSSLRNRMRCKA 228
+ R DNI ++L+ + + E V ++L N ++ K
Sbjct: 86 LIRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSKEKMNERVEWALTKAALWNEVKDKL 145
Query: 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 288
HK G S ++ I G+A+ S+ + + I + D V
Sbjct: 146 HKSGDSLSGGQQQRLCI--ARGIAIKPSVLLLDEPCSALDPISTMKIEELITELKQDYTV 203
Query: 289 VVVTHGDLLSLTDRARIRT---YLGELLGIPPAKQIFDIPESSDPEN 332
V+VTH + R T YLGEL+ +QIFD P+ E+
Sbjct: 204 VIVTHN--MQQATRCSDYTAFMYLGELVEFGQTQQIFDRPKIQRTED 248
>sp|A4YVM3|CLPX_BRASO ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Bradyrhizobium sp. (strain ORS278) GN=clpX PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----Y 164
SD ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 105 SDVELAKS-NILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILK 163
Query: 165 FLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
LQ +Y + R D SDN ++ + EGV+ L I +S+
Sbjct: 164 LLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|A5EKA7|CLPX_BRASB ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=clpX PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----Y 164
SD ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 105 SDVELAKS-NILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILK 163
Query: 165 FLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
LQ +Y + R D SDN ++ + EGV+ L I +S+
Sbjct: 164 LLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|Q8EUJ1|PSTB_MYCPE Phosphate import ATP-binding protein PstB OS=Mycoplasma penetrans
(strain HF-2) GN=pstB PE=3 SV=1
Length = 288
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 31/199 (15%)
Query: 100 WIENVGGMTLSD--YDVPKTTSLLLIGPKGSGKSS---LVNRISKVFENDKFASE---RA 151
+ EN L D D+ K IGP G GKS+ L+NR++++ N F +
Sbjct: 48 YYENGKKQALYDVNLDIKKNKVTSFIGPSGCGKSTFLRLLNRMNELLPNTTFDGDIYFEK 107
Query: 152 QVTYNS--SVGD-----GTYFLQEYTIPRGSNSFSLYD--TRSLSDDASDNINMIKLWIM 202
Q Y+ SV D G F + P S+YD +L + N ++ I
Sbjct: 108 QNIYSKKFSVLDLRIKVGMVFQKATPFP-----MSIYDNVAFALKNQGIKNKKILDETIE 162
Query: 203 EGVRHGELVIR--------RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 254
+ +R L +D S + + C A I C+PSV+ ++ +D +A
Sbjct: 163 KSLRSAALWDEVKDNLNDIATDLSGGQQQRLCIARAIACKPSVLL-MDEPTSALDPIATS 221
Query: 255 KSMEGDSDVEKQYNQIVAT 273
K E +++++Y I+ T
Sbjct: 222 KIEELIMELKEKYTIIIVT 240
>sp|Q3IS07|PSTB1_NATPD Phosphate import ATP-binding protein PstB 1 OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=pstB1 PE=3
SV=1
Length = 283
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 22/224 (9%)
Query: 100 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--------A 151
W ++ D+P+ LIGP G GKS+ + I+++ ND+ + R
Sbjct: 46 WYNETQALSDITMDIPEQEVTALIGPSGCGKSTFLRCINRM--NDRIDACRIEGELELHG 103
Query: 152 QVTYNSSVGDGTYFLQEYTIPRGSNSF--SLYDTRSLSDDASDNINMIKLWIMEGVRHGE 209
+ Y+ V + + + N F S+YD + I + E +R
Sbjct: 104 KNVYDEDVDPVALRRKVGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDARVEEALRGAA 163
Query: 210 L---VIRRSDSSSL-----RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 261
L V + D S L + + C A I +P V+ ++ +D +A K +
Sbjct: 164 LWDEVNDQLDESGLELSGGQQQRLCIARAIAPDPEVVL-MDEPTSALDPVAASKVEDLID 222
Query: 262 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARI 305
++ + Y +V T N + DK V +T G+L+ D A +
Sbjct: 223 ELVEDYT-VVIVTHNMQQAARISDKTAVFLTGGELVEFDDTASV 265
>sp|Q58476|Y1076_METJA Uncharacterized ATP-binding protein MJ1076 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1076 PE=3 SV=1
Length = 337
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 120 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFS 179
L + GPK SGKS+++ R+ K E NS++ Y L++Y P S
Sbjct: 25 LFVYGPKSSGKSTVMMRVIKELE-------------NSNIVFFYYNLRKYATPTKDEFLS 71
Query: 180 LY----DTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235
++ D + L + N+ + K I E I+ +D + N K G P
Sbjct: 72 IFFEKSDKKYLLNKLEINLKIFKFGIEENFDFNN--IKLNDVFAKINESINTVIKDGKRP 129
Query: 236 SVIRKVNFVIFVVDGLAVLKSM---EGDSDVEKQYNQIVATT 274
+ V+D L LK++ G S + + +N V+ T
Sbjct: 130 ---------VLVIDELQKLKNIYFNSGKSLLNELFNLFVSLT 162
>sp|B4U6S1|CLPX_HYDS0 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=clpX PE=3
SV=1
Length = 399
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGD 161
SD D+ K+ ++LLIGP GSGK+ L ++K+ N FA ++ +T VG+
Sbjct: 96 SDTDIEKS-NILLIGPTGSGKTLLAKTLAKIL-NVPFAIADATTLTEAGYVGE 146
>sp|B6ISY6|CLPX_RHOCS ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
GN=clpX PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 106 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-- 163
G +D ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 101 GAKHNDVELAKS-NILLIGPTGSGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVEN 159
Query: 164 ---YFLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 218
LQ +Y + R D SDN ++ + EGV+ L I +
Sbjct: 160 IILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVA 219
Query: 219 SL 220
S+
Sbjct: 220 SV 221
>sp|A9NDF9|CLPX_COXBR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain RSA 331 / Henzerling II) GN=clpX PE=3
SV=1
Length = 422
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 90 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 149
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 150 RAQVTYNSSVGD 161
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q83DJ1|CLPX_COXBU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=clpX
PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 90 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 149
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 150 RAQVTYNSSVGD 161
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|B6J0V9|CLPX_COXB2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain CbuG_Q212) GN=clpX PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 90 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 149
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 150 RAQVTYNSSVGD 161
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|B6J8W3|CLPX_COXB1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain CbuK_Q154) GN=clpX PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 90 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 149
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 150 RAQVTYNSSVGD 161
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q5GS84|CLPX_WOLTR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Wolbachia
sp. subsp. Brugia malayi (strain TRS) GN=clpX PE=3 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD------ 161
+SD ++ K+ +++LIGP GSGK+ L ++KV + ++ +T VGD
Sbjct: 108 AISDVEIEKS-NVMLIGPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGDDVESVL 166
Query: 162 ----------------GTYFLQEY-TIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 204
G F+ E I R S S S+ TR +S + + L IMEG
Sbjct: 167 SRLLQAANYDVAKAQRGIVFIDEIDKITRKSESTSI--TRDVS---GEGVQQALLKIMEG 221
>sp|A9KDS7|CLPX_COXBN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain Dugway 5J108-111) GN=clpX PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 90 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 149
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 150 RAQVTYNSSVGD 161
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q8RHJ9|CLPX_FUSNN ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC
25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=clpX PE=3
SV=1
Length = 423
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGDG-----TYFLQE- 168
+ +++LL+GP GSGK+ L ++K+ N FA ++ +T VGD +Q
Sbjct: 121 QKSNVLLVGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAGYVGDDVENVLVRLIQAC 179
Query: 169 -YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
Y IP D S+N+++ + EGV+ L I S +
Sbjct: 180 NYDIPNAERGIIYIDEFDKIARKSENVSITRDVSGEGVQQALLKIIEGTKSQV 232
>sp|Q73I60|CLPX_WOLPM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Wolbachia
pipientis wMel GN=clpX PE=3 SV=1
Length = 425
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161
+SD ++ K+ +++LIGP GSGK+ L ++KV + ++ +T VGD
Sbjct: 107 AISDIEIEKS-NIMLIGPTGSGKTLLAKTLAKVSDVPFAMADATTLTEAGYVGD 159
>sp|Q5FUR4|CLPX_GLUOX ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Gluconobacter oxydans (strain 621H) GN=clpX PE=3 SV=1
Length = 421
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----Y 164
SD ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 104 SDIEIAKS-NILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILK 162
Query: 165 FLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
LQ +Y + R D SDN ++ + EGV+ L + +S+
Sbjct: 163 LLQSADYNVDRAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTVASV 220
>sp|Q1LH94|MNME_RALME tRNA modification GTPase MnmE OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=mnmE PE=3 SV=1
Length = 475
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 178
S++L G GKSSL+N ++ S+ A VT + T TI
Sbjct: 222 SVVLAGQPNVGKSSLLNALA--------GSDLAIVT---PIAGTTRDRVRETIQIDGIPL 270
Query: 179 SLYDTRSLSDDASDNINMIKL---WIMEGVRHGELVIRRSDSS 218
+ DT L DDA+D + I + W E +RH ++V+ D++
Sbjct: 271 HIIDTAGLRDDAADEVERIGIERTW--EAIRHADIVLHLIDAA 311
>sp|Q39S52|PSTB_GEOMG Phosphate import ATP-binding protein PstB OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=pstB PE=3 SV=1
Length = 252
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 113 DVPKTTSLLLIGPKGSGKSSL---VNRISKVFENDKFASE 149
DVP+ T +IGP G GKS++ +NR+ +F N + +
Sbjct: 26 DVPENTVTAIIGPSGCGKSTMLRSLNRMHDLFPNARVTGK 65
>sp|B8EIL3|CLPX_METSB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=clpX PE=3 SV=1
Length = 421
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----YFLQ--EYT 170
+++LLIGP GSGK+ L ++++ + ++ +T VG+ LQ +Y
Sbjct: 112 SNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYN 171
Query: 171 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
+ R D SDN ++ + EGV+ L I +S+
Sbjct: 172 VERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|B2IGP2|CLPX_BEII9 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Beijerinckia
indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB
8712) GN=clpX PE=3 SV=1
Length = 421
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----YFLQ--EYT 170
+++LLIGP GSGK+ L ++++ + ++ +T VG+ LQ +Y
Sbjct: 112 SNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASDYN 171
Query: 171 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
+ R D SDN ++ + EGV+ L I +S+
Sbjct: 172 VERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|B3Q7P4|CLPX_RHOPT ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Rhodopseudomonas palustris (strain TIE-1) GN=clpX
PE=3 SV=1
Length = 424
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----YFLQ--EYT 170
+++LLIGP GSGK+ L ++++ + ++ +T VG+ LQ +Y
Sbjct: 112 SNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN 171
Query: 171 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
+ R D SDN ++ + EGV+ L I +S+
Sbjct: 172 VERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|Q6N5L4|CLPX_RHOPA ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=clpX PE=3 SV=1
Length = 424
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----YFLQ--EYT 170
+++LLIGP GSGK+ L ++++ + ++ +T VG+ LQ +Y
Sbjct: 112 SNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN 171
Query: 171 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
+ R D SDN ++ + EGV+ L I +S+
Sbjct: 172 VERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|A9HRV3|CLPX_GLUDA ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 /
DSM 5601 / PAl5) GN=clpX PE=3 SV=1
Length = 419
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----YF 165
D ++ K+ ++LL+GP GSGK+ L ++++ + ++ +T VG+
Sbjct: 105 DVEIAKS-NILLVGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKL 163
Query: 166 LQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220
LQ +Y + R D SDN ++ + EGV+ L I +S+
Sbjct: 164 LQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,671,512
Number of Sequences: 539616
Number of extensions: 5750566
Number of successful extensions: 78489
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 65552
Number of HSP's gapped (non-prelim): 11569
length of query: 361
length of database: 191,569,459
effective HSP length: 119
effective length of query: 242
effective length of database: 127,355,155
effective search space: 30819947510
effective search space used: 30819947510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)