Query 018083
Match_columns 361
No_of_seqs 303 out of 2357
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:00:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.3E-53 2.8E-58 387.7 -1.1 210 84-336 1-238 (240)
2 COG3842 PotA ABC-type spermidi 100.0 5.8E-49 1.3E-53 384.6 0.4 212 83-340 3-243 (352)
3 COG1135 AbcC ABC-type metal io 100.0 3.5E-49 7.5E-54 374.8 -1.5 213 85-336 1-244 (339)
4 COG1125 OpuBA ABC-type proline 100.0 1.6E-48 3.5E-53 361.4 -2.7 210 85-337 1-239 (309)
5 COG1117 PstB ABC-type phosphat 100.0 4.9E-48 1.1E-52 350.4 -0.4 219 83-335 5-249 (253)
6 COG3839 MalK ABC-type sugar tr 100.0 2.1E-47 4.4E-52 371.9 0.8 210 83-339 1-239 (338)
7 COG1116 TauB ABC-type nitrate/ 100.0 1.2E-44 2.6E-49 336.3 5.5 177 84-310 2-207 (248)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.3E-45 2.9E-50 339.9 -1.7 212 83-335 6-246 (263)
9 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-44 2.3E-49 343.6 1.7 216 85-346 2-250 (345)
10 COG1124 DppF ABC-type dipeptid 100.0 2.4E-44 5.1E-49 332.4 1.0 214 83-338 1-246 (252)
11 COG4175 ProV ABC-type proline/ 100.0 9.2E-44 2E-48 338.1 -0.4 220 85-340 4-271 (386)
12 COG3638 ABC-type phosphate/pho 100.0 2.3E-43 5E-48 324.3 0.9 198 84-321 2-235 (258)
13 COG1136 SalX ABC-type antimicr 100.0 4E-43 8.7E-48 324.7 -1.3 190 85-312 1-220 (226)
14 KOG0058 Peptide exporter, ABC 100.0 5.7E-43 1.2E-47 361.7 -1.8 231 59-326 432-694 (716)
15 COG0444 DppD ABC-type dipeptid 100.0 1.6E-42 3.5E-47 332.0 -0.1 226 85-340 1-260 (316)
16 COG2884 FtsE Predicted ATPase 100.0 4.5E-42 9.7E-47 306.6 2.6 192 85-317 1-220 (223)
17 COG1120 FepC ABC-type cobalami 100.0 2.3E-42 5.1E-47 325.3 -0.4 197 85-325 2-230 (258)
18 COG2274 SunT ABC-type bacterio 100.0 4.9E-42 1.1E-46 363.4 0.5 232 55-324 433-697 (709)
19 COG3840 ThiQ ABC-type thiamine 100.0 8.6E-42 1.9E-46 303.1 2.0 193 85-326 1-222 (231)
20 PRK11650 ugpC glycerol-3-phosp 100.0 3.4E-42 7.4E-47 340.6 -1.8 205 84-335 2-236 (356)
21 TIGR02314 ABC_MetN D-methionin 100.0 4.7E-42 1E-46 337.9 -1.9 212 85-335 1-242 (343)
22 COG4598 HisP ABC-type histidin 100.0 9.1E-42 2E-46 302.6 -1.1 223 82-335 3-253 (256)
23 TIGR03265 PhnT2 putative 2-ami 100.0 7.7E-42 1.7E-46 337.7 -2.0 206 83-335 2-236 (353)
24 PRK11432 fbpC ferric transport 100.0 7.4E-42 1.6E-46 337.5 -2.4 207 82-335 3-238 (351)
25 COG1122 CbiO ABC-type cobalt t 100.0 1.7E-41 3.6E-46 317.5 -0.3 199 84-325 2-230 (235)
26 PRK09452 potA putrescine/sperm 100.0 1.5E-41 3.2E-46 338.0 -2.7 208 82-336 11-247 (375)
27 COG1123 ATPase components of v 100.0 6E-41 1.3E-45 341.4 -0.3 219 82-338 277-534 (539)
28 PRK10851 sulfate/thiosulfate t 100.0 6.8E-41 1.5E-45 331.0 -1.1 205 85-335 2-238 (353)
29 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.5E-40 5.4E-45 310.4 2.6 196 83-326 2-230 (254)
30 PRK15079 oligopeptide ABC tran 100.0 9.3E-41 2E-45 327.4 -3.0 220 82-338 5-266 (331)
31 PRK11607 potG putrescine trans 100.0 1.3E-40 2.9E-45 331.4 -3.1 207 82-335 16-251 (377)
32 PRK11022 dppD dipeptide transp 100.0 1.6E-40 3.5E-45 325.1 -2.6 224 84-338 2-258 (326)
33 PRK11308 dppF dipeptide transp 100.0 1.8E-40 3.9E-45 324.9 -2.3 219 83-338 3-259 (327)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 1.8E-40 4E-45 328.8 -2.5 204 85-335 5-240 (362)
35 COG0411 LivG ABC-type branched 100.0 4.8E-40 1E-44 303.9 -0.1 200 83-326 2-242 (250)
36 PRK11000 maltose/maltodextrin 100.0 4.6E-40 1E-44 326.9 -2.2 205 84-335 2-235 (369)
37 KOG0055 Multidrug/pheromone ex 100.0 7.3E-40 1.6E-44 354.7 -0.9 230 59-325 315-578 (1228)
38 COG1132 MdlB ABC-type multidru 100.0 7.2E-40 1.6E-44 341.4 -1.5 222 64-324 301-553 (567)
39 PRK09473 oppD oligopeptide tra 100.0 5.6E-40 1.2E-44 321.8 -3.0 222 82-338 9-266 (330)
40 cd03261 ABC_Org_Solvent_Resist 100.0 1.4E-39 3.1E-44 303.1 -0.4 198 86-324 1-227 (235)
41 COG1123 ATPase components of v 100.0 1.4E-39 3E-44 331.4 -0.7 225 84-340 4-261 (539)
42 PRK11174 cysteine/glutathione 100.0 1.8E-39 3.9E-44 339.5 -1.6 222 63-324 319-573 (588)
43 COG4608 AppF ABC-type oligopep 100.0 8.9E-39 1.9E-43 300.5 2.3 180 83-339 2-215 (268)
44 TIGR01186 proV glycine betaine 100.0 1.3E-39 2.8E-44 322.7 -3.6 197 93-334 1-230 (363)
45 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.1E-39 9E-44 343.8 -0.9 225 62-324 440-701 (710)
46 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.6E-39 1.2E-43 341.6 -0.7 226 60-324 420-674 (686)
47 KOG0055 Multidrug/pheromone ex 100.0 5.9E-39 1.3E-43 347.6 -0.7 226 61-323 954-1213(1228)
48 TIGR01193 bacteriocin_ABC ABC- 100.0 6.1E-39 1.3E-43 342.4 -1.0 225 62-324 442-698 (708)
49 PRK15093 antimicrobial peptide 100.0 4.5E-39 9.6E-44 315.3 -2.4 225 83-338 1-263 (330)
50 PRK11160 cysteine/glutathione 100.0 1.3E-38 2.8E-43 332.8 0.5 224 62-324 308-563 (574)
51 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-38 2.4E-43 298.1 -0.4 199 85-329 2-232 (239)
52 PRK11153 metN DL-methionine tr 100.0 5.1E-39 1.1E-43 316.5 -2.8 206 85-329 1-236 (343)
53 TIGR00958 3a01208 Conjugate Tr 100.0 8.9E-39 1.9E-43 341.5 -1.9 227 62-325 448-704 (711)
54 TIGR03375 type_I_sec_LssB type 100.0 1.4E-38 3.1E-43 339.0 -0.5 225 62-324 432-689 (694)
55 COG4618 ArpD ABC-type protease 100.0 2.7E-38 5.9E-43 315.6 0.7 233 54-324 298-561 (580)
56 PRK11264 putative amino-acid A 100.0 1.2E-38 2.6E-43 299.3 -1.9 210 84-329 2-239 (250)
57 COG4172 ABC-type uncharacteriz 100.0 1.5E-38 3.2E-43 310.3 -1.4 217 82-336 273-529 (534)
58 TIGR00972 3a0107s01c2 phosphat 100.0 1.5E-38 3.2E-43 298.6 -1.4 207 85-329 1-238 (247)
59 PRK13637 cbiO cobalt transport 100.0 1.7E-38 3.7E-43 305.4 -1.2 201 85-325 2-236 (287)
60 PRK13647 cbiO cobalt transport 100.0 2.1E-38 4.6E-43 302.8 -0.8 193 84-320 3-224 (274)
61 PRK11176 lipid transporter ATP 100.0 2E-38 4.4E-43 331.1 -1.1 226 62-324 312-568 (582)
62 cd03219 ABC_Mj1267_LivG_branch 100.0 3.2E-38 6.9E-43 293.8 0.1 196 86-325 1-234 (236)
63 PRK14250 phosphate ABC transpo 100.0 4.7E-38 1E-42 294.5 1.1 198 84-329 2-227 (241)
64 PRK13537 nodulation ABC transp 100.0 1.6E-38 3.4E-43 308.5 -2.2 196 83-324 5-228 (306)
65 PRK13631 cbiO cobalt transport 100.0 2.6E-38 5.7E-43 308.8 -0.7 216 82-325 18-267 (320)
66 PRK10790 putative multidrug tr 100.0 2.4E-38 5.1E-43 331.4 -1.1 223 62-324 312-564 (592)
67 PRK10070 glycine betaine trans 100.0 1.3E-38 2.8E-43 319.0 -3.0 193 107-335 44-266 (400)
68 COG1137 YhbG ABC-type (unclass 100.0 1.8E-38 3.8E-43 285.6 -1.8 201 83-327 2-232 (243)
69 PRK09493 glnQ glutamine ABC tr 100.0 1.9E-38 4.2E-43 296.3 -1.7 203 85-329 1-231 (240)
70 cd03260 ABC_PstB_phosphate_tra 100.0 5E-38 1.1E-42 291.1 0.9 192 86-321 1-227 (227)
71 PRK13643 cbiO cobalt transport 100.0 2.9E-38 6.3E-43 304.0 -0.9 203 85-324 1-234 (288)
72 TIGR00960 3a0501s02 Type II (G 100.0 4E-38 8.7E-43 289.6 0.1 188 85-312 1-216 (216)
73 PRK14273 phosphate ABC transpo 100.0 3.1E-38 6.6E-43 297.6 -0.9 219 82-333 4-248 (254)
74 COG4988 CydD ABC-type transpor 100.0 7.2E-38 1.6E-42 318.2 1.6 223 62-324 288-544 (559)
75 KOG0057 Mitochondrial Fe/S clu 100.0 6.2E-38 1.3E-42 315.5 0.9 199 85-323 351-574 (591)
76 PRK13651 cobalt transporter AT 100.0 3.3E-38 7.2E-43 306.2 -1.2 215 85-325 2-256 (305)
77 cd03258 ABC_MetN_methionine_tr 100.0 4E-38 8.6E-43 292.8 -1.1 201 85-324 1-231 (233)
78 COG1131 CcmA ABC-type multidru 100.0 4E-38 8.7E-43 304.0 -1.6 196 84-324 3-227 (293)
79 PRK11144 modC molybdate transp 100.0 8.5E-38 1.8E-42 308.8 0.6 201 85-335 1-230 (352)
80 PRK11831 putative ABC transpor 100.0 5.2E-38 1.1E-42 299.0 -0.8 203 82-325 4-235 (269)
81 PRK13634 cbiO cobalt transport 100.0 6E-38 1.3E-42 302.0 -0.4 203 86-325 3-237 (290)
82 TIGR02315 ABC_phnC phosphonate 100.0 9.7E-38 2.1E-42 291.7 0.9 197 85-321 1-233 (243)
83 PRK13650 cbiO cobalt transport 100.0 5.7E-38 1.2E-42 300.5 -0.8 199 84-325 3-231 (279)
84 cd03256 ABC_PhnC_transporter A 100.0 9.2E-38 2E-42 291.2 0.6 196 86-321 1-232 (241)
85 TIGR03005 ectoine_ehuA ectoine 100.0 3.9E-38 8.5E-43 296.5 -2.4 216 86-332 1-245 (252)
86 PRK09536 btuD corrinoid ABC tr 100.0 6.9E-38 1.5E-42 314.0 -0.8 198 84-325 2-230 (402)
87 COG4987 CydC ABC-type transpor 100.0 1.2E-37 2.6E-42 313.1 0.9 222 65-324 310-562 (573)
88 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.2E-38 1.3E-42 293.5 -1.4 199 86-327 1-229 (242)
89 PRK13646 cbiO cobalt transport 100.0 9E-38 1.9E-42 300.2 -0.5 203 86-325 3-237 (286)
90 PRK13652 cbiO cobalt transport 100.0 8.9E-38 1.9E-42 298.8 -0.6 198 84-325 2-229 (277)
91 cd03259 ABC_Carb_Solutes_like 100.0 1.7E-37 3.7E-42 284.8 1.2 184 86-316 1-213 (213)
92 PRK10895 lipopolysaccharide AB 100.0 1.4E-37 3.1E-42 290.7 0.6 197 84-324 2-227 (241)
93 PRK14242 phosphate transporter 100.0 7.4E-38 1.6E-42 294.6 -1.3 216 82-330 3-244 (253)
94 PRK14247 phosphate ABC transpo 100.0 8.7E-38 1.9E-42 293.6 -0.9 210 83-327 1-238 (250)
95 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-37 2.5E-42 287.6 -0.5 189 86-320 1-218 (220)
96 cd03263 ABC_subfamily_A The AB 100.0 1.1E-37 2.4E-42 287.1 -0.9 192 86-321 1-219 (220)
97 COG4172 ABC-type uncharacteriz 100.0 2.4E-37 5.2E-42 301.9 1.2 225 82-336 3-260 (534)
98 PRK13536 nodulation factor exp 100.0 7.2E-38 1.6E-42 308.0 -2.7 197 82-324 38-262 (340)
99 PRK14268 phosphate ABC transpo 100.0 8.1E-38 1.7E-42 295.7 -2.2 217 82-332 9-251 (258)
100 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1E-37 2.3E-42 297.1 -1.9 201 87-329 26-256 (269)
101 PRK10619 histidine/lysine/argi 100.0 1.1E-37 2.4E-42 294.5 -1.8 215 83-327 3-245 (257)
102 COG4181 Predicted ABC-type tra 100.0 3.3E-37 7.2E-42 271.6 1.4 193 84-315 5-227 (228)
103 PRK13636 cbiO cobalt transport 100.0 2.1E-37 4.5E-42 297.2 -0.0 200 84-325 4-233 (283)
104 TIGR01288 nodI ATP-binding ABC 100.0 9.9E-38 2.2E-42 302.2 -2.3 195 84-324 3-225 (303)
105 PRK14269 phosphate ABC transpo 100.0 1.4E-37 3E-42 292.0 -1.3 208 85-329 2-236 (246)
106 PRK14274 phosphate ABC transpo 100.0 1.6E-37 3.6E-42 293.6 -1.2 218 82-332 9-252 (259)
107 PTZ00265 multidrug resistance 100.0 1.7E-37 3.6E-42 351.7 -1.4 229 64-324 1132-1453(1466)
108 TIGR02769 nickel_nikE nickel i 100.0 1.3E-37 2.9E-42 295.5 -1.9 208 85-330 2-246 (265)
109 PRK10744 pstB phosphate transp 100.0 2.2E-37 4.8E-42 293.1 -0.6 216 82-330 10-251 (260)
110 cd03224 ABC_TM1139_LivF_branch 100.0 2.5E-37 5.4E-42 285.0 -0.3 191 86-323 1-221 (222)
111 PRK14257 phosphate ABC transpo 100.0 1.6E-37 3.5E-42 304.3 -1.8 221 82-333 77-323 (329)
112 PRK13657 cyclic beta-1,2-gluca 100.0 1.9E-37 4.1E-42 324.5 -1.5 224 62-324 303-559 (588)
113 cd03218 ABC_YhbG The ABC trans 100.0 2.6E-37 5.7E-42 286.8 -0.3 193 86-323 1-222 (232)
114 cd03266 ABC_NatA_sodium_export 100.0 1.7E-37 3.7E-42 285.5 -1.6 189 85-316 1-218 (218)
115 PRK10261 glutathione transport 100.0 1.8E-37 3.9E-42 327.1 -1.7 219 83-338 311-568 (623)
116 cd03301 ABC_MalK_N The N-termi 100.0 4.3E-37 9.3E-42 281.9 0.9 184 86-316 1-213 (213)
117 PRK15112 antimicrobial peptide 100.0 3.1E-37 6.6E-42 293.5 -0.5 207 83-329 2-245 (267)
118 PRK14245 phosphate ABC transpo 100.0 2.2E-37 4.7E-42 291.1 -1.4 210 84-331 2-242 (250)
119 COG0410 LivF ABC-type branched 100.0 4.2E-37 9.2E-42 282.4 0.4 197 84-326 2-229 (237)
120 PRK13639 cbiO cobalt transport 100.0 2.9E-37 6.3E-42 294.9 -0.8 199 85-325 1-228 (275)
121 TIGR02203 MsbA_lipidA lipid A 100.0 2.9E-37 6.3E-42 321.3 -1.0 226 62-324 301-557 (571)
122 TIGR02673 FtsE cell division A 100.0 5.3E-37 1.1E-41 281.5 0.7 186 85-311 1-214 (214)
123 COG4555 NatA ABC-type Na+ tran 100.0 2.4E-37 5.2E-42 278.6 -1.6 196 85-325 1-224 (245)
124 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.7E-37 1E-41 283.5 -0.1 186 86-318 1-218 (220)
125 PRK14248 phosphate ABC transpo 100.0 5.1E-37 1.1E-41 291.8 0.1 220 80-332 16-261 (268)
126 PRK13641 cbiO cobalt transport 100.0 3.9E-37 8.5E-42 295.9 -0.8 203 85-324 2-235 (287)
127 TIGR03415 ABC_choXWV_ATP choli 100.0 9.7E-38 2.1E-42 310.9 -5.3 204 89-334 28-265 (382)
128 PRK14235 phosphate transporter 100.0 3.8E-37 8.1E-42 292.9 -1.1 215 82-329 16-257 (267)
129 PRK14240 phosphate transporter 100.0 4.5E-37 9.7E-42 288.8 -0.7 215 84-331 2-242 (250)
130 PRK14267 phosphate ABC transpo 100.0 3.2E-37 7E-42 290.3 -1.6 212 83-327 2-241 (253)
131 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-36 2.2E-41 278.3 1.7 176 87-313 1-205 (205)
132 PRK13638 cbiO cobalt transport 100.0 4.1E-37 8.9E-42 293.0 -1.1 198 85-325 1-227 (271)
133 PRK14239 phosphate transporter 100.0 4E-37 8.8E-42 289.2 -1.2 211 84-330 4-243 (252)
134 PRK14270 phosphate ABC transpo 100.0 4.2E-37 9E-42 289.4 -1.2 217 83-332 2-244 (251)
135 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.7E-37 1.9E-41 280.8 0.8 187 86-312 1-218 (218)
136 PRK14256 phosphate ABC transpo 100.0 5E-37 1.1E-41 289.0 -0.9 217 84-333 3-246 (252)
137 PRK11614 livF leucine/isoleuci 100.0 4.1E-37 8.8E-42 286.9 -1.7 194 83-323 3-226 (237)
138 PRK13644 cbiO cobalt transport 100.0 6.8E-37 1.5E-41 292.4 -0.3 196 85-325 1-226 (274)
139 PRK14249 phosphate ABC transpo 100.0 5.6E-37 1.2E-41 288.5 -1.0 212 83-332 2-244 (251)
140 PRK10908 cell division protein 100.0 9.2E-37 2E-41 281.9 0.5 189 85-314 1-217 (222)
141 KOG0056 Heavy metal exporter H 100.0 3.2E-37 6.9E-42 306.1 -2.8 227 67-332 511-770 (790)
142 PRK11701 phnK phosphonate C-P 100.0 4.8E-37 1E-41 290.3 -1.9 209 83-329 4-247 (258)
143 PRK13635 cbiO cobalt transport 100.0 8.7E-37 1.9E-41 292.5 -0.2 197 84-324 4-230 (279)
144 PRK10575 iron-hydroxamate tran 100.0 9.3E-37 2E-41 289.7 -0.0 198 82-323 8-237 (265)
145 TIGR02142 modC_ABC molybdenum 100.0 1.1E-36 2.3E-41 301.2 0.3 195 90-329 4-227 (354)
146 PRK14237 phosphate transporter 100.0 8E-37 1.7E-41 290.6 -0.6 215 82-329 17-257 (267)
147 PRK14253 phosphate ABC transpo 100.0 8.4E-37 1.8E-41 286.8 -0.6 214 84-331 2-241 (249)
148 cd03292 ABC_FtsE_transporter F 100.0 8.8E-37 1.9E-41 279.8 -0.5 186 86-312 1-214 (214)
149 TIGR02868 CydC thiol reductant 100.0 1.9E-36 4.1E-41 313.0 1.9 194 62-294 301-528 (529)
150 TIGR01846 type_I_sec_HlyB type 100.0 8.6E-37 1.9E-41 325.4 -0.8 226 62-325 425-682 (694)
151 PRK11124 artP arginine transpo 100.0 6.4E-37 1.4E-41 286.4 -1.7 199 85-321 2-228 (242)
152 PRK14241 phosphate transporter 100.0 7E-37 1.5E-41 289.1 -1.5 211 85-328 4-247 (258)
153 PRK14251 phosphate ABC transpo 100.0 6.6E-37 1.4E-41 287.8 -1.7 214 84-330 3-242 (251)
154 PRK11300 livG leucine/isoleuci 100.0 1.3E-36 2.8E-41 286.2 0.2 197 84-324 4-244 (255)
155 PRK13633 cobalt transporter AT 100.0 2E-36 4.3E-41 289.9 1.3 200 83-324 2-234 (280)
156 PRK10771 thiQ thiamine transpo 100.0 1.9E-36 4.1E-41 281.8 1.0 192 85-325 1-221 (232)
157 cd03268 ABC_BcrA_bacitracin_re 100.0 1.1E-36 2.4E-41 278.5 -0.7 180 86-316 1-208 (208)
158 COG4161 ArtP ABC-type arginine 100.0 1.4E-36 3E-41 265.7 -0.0 203 86-327 3-233 (242)
159 PRK10261 glutathione transport 100.0 9.5E-37 2.1E-41 321.6 -1.4 228 82-334 9-269 (623)
160 PRK14262 phosphate ABC transpo 100.0 7.5E-37 1.6E-41 287.3 -2.1 211 84-327 2-238 (250)
161 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.6E-36 3.5E-41 283.0 0.0 193 85-324 1-222 (236)
162 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-36 3E-41 278.3 -0.4 185 86-312 1-213 (213)
163 PRK11231 fecE iron-dicitrate t 100.0 1.3E-36 2.8E-41 286.8 -0.7 195 85-323 2-227 (255)
164 cd03257 ABC_NikE_OppD_transpor 100.0 2E-36 4.2E-41 279.8 0.4 195 85-316 1-228 (228)
165 cd03264 ABC_drug_resistance_li 100.0 1.1E-36 2.4E-41 279.0 -1.2 184 86-316 1-211 (211)
166 PRK11247 ssuB aliphatic sulfon 100.0 2.5E-36 5.4E-41 286.3 1.1 181 83-319 10-219 (257)
167 PRK13648 cbiO cobalt transport 100.0 2.3E-36 4.9E-41 287.6 0.8 199 83-325 5-233 (269)
168 TIGR02204 MsbA_rel ABC transpo 100.0 9.5E-37 2.1E-41 317.9 -2.2 229 59-324 302-564 (576)
169 TIGR03522 GldA_ABC_ATP gliding 100.0 1E-36 2.2E-41 295.0 -2.0 193 85-323 2-221 (301)
170 cd03269 ABC_putative_ATPase Th 100.0 1.5E-36 3.2E-41 278.0 -0.8 182 86-316 1-210 (210)
171 PRK13632 cbiO cobalt transport 100.0 2.4E-36 5.3E-41 287.9 0.5 199 83-325 5-233 (271)
172 PRK14259 phosphate ABC transpo 100.0 2.1E-36 4.6E-41 288.1 0.1 215 82-331 10-261 (269)
173 PRK10789 putative multidrug tr 100.0 1.7E-36 3.8E-41 316.4 -0.8 224 64-325 286-540 (569)
174 PRK14261 phosphate ABC transpo 100.0 1.7E-36 3.6E-41 285.6 -0.8 216 83-331 4-245 (253)
175 cd03235 ABC_Metallic_Cations A 100.0 3.8E-36 8.2E-41 275.9 1.3 179 87-315 1-212 (213)
176 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.9E-36 8.4E-41 275.4 1.3 182 86-316 1-211 (211)
177 TIGR03411 urea_trans_UrtD urea 100.0 2.2E-36 4.7E-41 282.7 -0.4 196 84-323 1-231 (242)
178 PRK13649 cbiO cobalt transport 100.0 2E-36 4.4E-41 289.4 -0.7 203 86-325 3-236 (280)
179 PLN03232 ABC transporter C fam 100.0 1.8E-36 4E-41 344.8 -1.1 225 63-326 1201-1461(1495)
180 PRK10253 iron-enterobactin tra 100.0 2E-36 4.3E-41 287.5 -0.8 197 83-323 5-233 (265)
181 PRK11629 lolD lipoprotein tran 100.0 1.9E-36 4.1E-41 281.9 -0.9 191 84-317 4-228 (233)
182 PRK13640 cbiO cobalt transport 100.0 1.9E-36 4E-41 290.5 -1.1 198 84-325 4-234 (282)
183 TIGR01978 sufC FeS assembly AT 100.0 3.4E-36 7.5E-41 281.0 0.7 195 86-323 1-234 (243)
184 COG1129 MglA ABC-type sugar tr 100.0 4E-36 8.7E-41 304.2 1.2 193 82-318 5-229 (500)
185 COG4604 CeuD ABC-type enteroch 100.0 3.4E-36 7.3E-41 270.4 0.4 197 85-325 1-227 (252)
186 PRK13645 cbiO cobalt transport 100.0 3E-36 6.5E-41 289.8 0.1 206 84-325 5-242 (289)
187 PRK11248 tauB taurine transpor 100.0 2.9E-36 6.4E-41 285.2 0.0 185 85-319 1-216 (255)
188 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-36 4.2E-41 285.0 -1.6 204 84-330 2-245 (253)
189 TIGR01277 thiQ thiamine ABC tr 100.0 5.1E-36 1.1E-40 275.5 1.2 184 86-318 1-213 (213)
190 PRK14236 phosphate transporter 100.0 2.6E-36 5.7E-41 287.8 -0.8 216 82-330 22-263 (272)
191 PLN03130 ABC transporter C fam 100.0 2.8E-36 6E-41 344.5 -1.2 225 63-326 1204-1464(1622)
192 PRK14254 phosphate ABC transpo 100.0 1.5E-36 3.2E-41 291.7 -2.9 217 79-329 33-275 (285)
193 PRK13642 cbiO cobalt transport 100.0 3.3E-36 7.1E-41 288.0 -0.6 199 84-325 3-231 (277)
194 TIGR03873 F420-0_ABC_ATP propo 100.0 3.3E-36 7.1E-41 284.3 -0.6 194 86-323 2-226 (256)
195 PRK13548 hmuV hemin importer A 100.0 4E-36 8.6E-41 284.5 -0.3 194 85-323 2-230 (258)
196 TIGR01188 drrA daunorubicin re 100.0 1.8E-36 4E-41 293.2 -2.8 186 93-324 1-214 (302)
197 PRK14260 phosphate ABC transpo 100.0 3.4E-36 7.3E-41 284.8 -1.0 217 83-332 5-252 (259)
198 TIGR02211 LolD_lipo_ex lipopro 100.0 4.5E-36 9.9E-41 276.6 -0.2 186 85-313 1-220 (221)
199 cd03225 ABC_cobalt_CbiO_domain 100.0 4.5E-36 9.7E-41 274.8 -0.3 182 87-311 1-211 (211)
200 COG4559 ABC-type hemin transpo 100.0 8.5E-36 1.8E-40 270.5 1.5 197 85-325 1-232 (259)
201 PRK14271 phosphate ABC transpo 100.0 3.5E-36 7.6E-41 287.9 -1.2 213 82-329 18-257 (276)
202 PRK14255 phosphate ABC transpo 100.0 3.7E-36 8E-41 282.9 -1.1 214 83-329 3-242 (252)
203 TIGR01192 chvA glucan exporter 100.0 4.1E-36 8.9E-41 314.6 -0.9 222 64-324 305-559 (585)
204 PRK14238 phosphate transporter 100.0 2.9E-36 6.3E-41 287.5 -1.9 216 82-330 21-262 (271)
205 PRK14243 phosphate transporter 100.0 4.9E-36 1.1E-40 284.8 -0.4 213 84-331 9-256 (264)
206 TIGR01842 type_I_sec_PrtD type 100.0 4.9E-36 1.1E-40 311.3 -0.5 224 61-322 287-541 (544)
207 PRK14275 phosphate ABC transpo 100.0 3.3E-36 7.2E-41 289.4 -2.0 216 82-330 36-277 (286)
208 TIGR00968 3a0106s01 sulfate AB 100.0 4.7E-36 1E-40 280.3 -1.0 202 86-334 1-231 (237)
209 TIGR00957 MRP_assoc_pro multi 100.0 7.5E-36 1.6E-40 340.3 -0.4 226 60-324 1248-1509(1522)
210 COG4148 ModC ABC-type molybdat 100.0 1.1E-35 2.3E-40 279.1 0.7 177 109-326 16-221 (352)
211 PRK13549 xylose transporter AT 100.0 1.2E-35 2.7E-40 305.9 1.2 196 83-322 3-231 (506)
212 PRK10584 putative ABC transpor 100.0 6.2E-36 1.4E-40 277.2 -1.1 194 83-315 4-227 (228)
213 PRK09984 phosphonate/organopho 100.0 1.1E-35 2.3E-40 281.7 0.4 200 83-321 2-240 (262)
214 PRK10762 D-ribose transporter 100.0 1.3E-35 2.8E-40 305.4 1.0 195 84-322 3-229 (501)
215 PRK14272 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 281.4 -1.4 207 85-329 4-242 (252)
216 PRK10419 nikE nickel transport 100.0 8.5E-36 1.8E-40 283.8 -0.5 209 83-330 1-247 (268)
217 PRK14266 phosphate ABC transpo 100.0 9.3E-36 2E-40 279.9 -0.3 214 85-331 3-242 (250)
218 PRK14258 phosphate ABC transpo 100.0 7.6E-36 1.6E-40 282.9 -0.9 208 84-329 6-251 (261)
219 PRK15134 microcin C ABC transp 100.0 8.1E-36 1.8E-40 308.8 -0.9 212 82-331 272-523 (529)
220 PRK09700 D-allose transporter 100.0 1.9E-35 4.2E-40 304.7 1.3 197 83-323 3-234 (510)
221 PRK14265 phosphate ABC transpo 100.0 7.1E-36 1.5E-40 285.3 -1.9 215 82-331 17-266 (274)
222 COG4525 TauB ABC-type taurine 100.0 3.1E-35 6.8E-40 263.9 2.2 188 83-318 1-219 (259)
223 cd03300 ABC_PotA_N PotA is an 100.0 9.8E-36 2.1E-40 277.2 -1.1 194 86-326 1-223 (232)
224 cd03299 ABC_ModC_like Archeal 100.0 9.1E-36 2E-40 278.0 -1.8 193 86-326 1-222 (235)
225 TIGR03410 urea_trans_UrtE urea 100.0 9.5E-36 2.1E-40 276.3 -1.7 188 86-321 1-219 (230)
226 PRK14244 phosphate ABC transpo 100.0 1.1E-35 2.3E-40 279.8 -1.6 212 86-330 6-244 (251)
227 PRK14246 phosphate ABC transpo 100.0 9.9E-36 2.1E-40 281.9 -1.8 216 82-331 7-249 (257)
228 cd03254 ABCC_Glucan_exporter_l 100.0 2.8E-35 6E-40 272.8 0.8 199 85-323 2-226 (229)
229 cd03252 ABCC_Hemolysin The ABC 100.0 2.6E-35 5.6E-40 274.6 0.6 193 86-324 1-226 (237)
230 TIGR02857 CydD thiol reductant 100.0 2.9E-35 6.3E-40 304.2 0.4 205 63-304 292-527 (529)
231 PRK15439 autoinducer 2 ABC tra 100.0 2.3E-35 5E-40 304.3 -0.3 193 82-323 8-229 (510)
232 PRK10247 putative ABC transpor 100.0 4.5E-35 9.8E-40 271.7 1.6 190 83-319 5-223 (225)
233 PRK15134 microcin C ABC transp 100.0 2E-35 4.4E-40 305.8 -1.0 214 83-326 3-249 (529)
234 PRK10418 nikD nickel transport 100.0 2.4E-35 5.2E-40 278.3 -0.8 198 85-329 4-236 (254)
235 PTZ00243 ABC transporter; Prov 100.0 2.6E-35 5.6E-40 335.9 -0.9 203 85-326 1308-1536(1560)
236 cd03289 ABCC_CFTR2 The CFTR su 100.0 5E-35 1.1E-39 280.1 1.1 190 85-325 2-227 (275)
237 PRK14264 phosphate ABC transpo 100.0 3.7E-35 8E-40 284.6 0.0 253 26-330 5-296 (305)
238 PRK14252 phosphate ABC transpo 100.0 2.7E-35 5.9E-40 279.5 -1.2 218 83-331 14-257 (265)
239 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-35 1.1E-39 272.0 0.4 193 86-324 1-226 (234)
240 cd03245 ABCC_bacteriocin_expor 100.0 6.4E-35 1.4E-39 268.8 0.8 193 86-316 3-220 (220)
241 PRK13547 hmuV hemin importer A 100.0 4.9E-35 1.1E-39 279.6 -0.1 195 85-323 1-244 (272)
242 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-34 2.2E-39 270.7 1.6 201 86-324 1-227 (238)
243 PRK15056 manganese/iron transp 100.0 1.3E-34 2.9E-39 276.0 2.0 192 85-323 6-230 (272)
244 PRK14263 phosphate ABC transpo 100.0 5.7E-35 1.2E-39 277.3 -0.9 211 82-327 5-249 (261)
245 cd03248 ABCC_TAP TAP, the Tran 100.0 2.8E-34 6E-39 265.8 3.0 187 81-312 7-226 (226)
246 TIGR02982 heterocyst_DevA ABC 100.0 8.8E-35 1.9E-39 268.5 -0.4 191 85-313 1-220 (220)
247 cd03253 ABCC_ATM1_transporter 100.0 1.7E-34 3.8E-39 268.6 0.9 198 86-323 1-224 (236)
248 COG3845 ABC-type uncharacteriz 100.0 2E-34 4.4E-39 287.7 1.4 192 83-317 2-223 (501)
249 PRK10982 galactose/methyl gala 100.0 1.7E-34 3.7E-39 296.3 0.6 190 88-321 1-221 (491)
250 PRK11288 araG L-arabinose tran 100.0 1.9E-34 4E-39 296.8 0.7 193 83-318 2-224 (501)
251 TIGR03740 galliderm_ABC gallid 100.0 1.5E-34 3.2E-39 267.3 -0.1 181 86-319 1-209 (223)
252 PRK10938 putative molybdenum t 100.0 2.3E-34 5.1E-39 295.1 1.3 187 85-324 3-225 (490)
253 PTZ00265 multidrug resistance 100.0 1.4E-34 3.1E-39 327.9 -0.5 220 61-310 351-655 (1466)
254 cd03297 ABC_ModC_molybdenum_tr 100.0 1.3E-34 2.9E-39 266.1 -0.6 184 86-316 2-214 (214)
255 TIGR01184 ntrCD nitrate transp 100.0 2.2E-34 4.7E-39 268.1 0.4 172 107-321 1-202 (230)
256 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-33 2.5E-38 294.5 4.3 187 85-316 337-552 (555)
257 PRK10522 multidrug transporter 100.0 1.1E-33 2.4E-38 294.0 4.1 180 85-315 322-530 (547)
258 TIGR02633 xylG D-xylose ABC tr 100.0 4.3E-34 9.3E-39 293.9 0.8 194 85-321 1-228 (500)
259 COG4152 ABC-type uncharacteriz 100.0 3.7E-34 8E-39 264.4 0.3 190 85-323 2-219 (300)
260 CHL00131 ycf16 sulfate ABC tra 100.0 5.5E-34 1.2E-38 267.9 1.0 195 83-320 5-238 (252)
261 TIGR03608 L_ocin_972_ABC putat 100.0 5.7E-34 1.2E-38 259.7 0.8 177 88-304 1-204 (206)
262 cd03244 ABCC_MRP_domain2 Domai 100.0 7.8E-34 1.7E-38 261.7 1.5 193 85-317 2-220 (221)
263 TIGR02770 nickel_nikD nickel i 100.0 2.2E-34 4.7E-39 267.8 -2.6 182 107-326 2-218 (230)
264 COG4167 SapF ABC-type antimicr 100.0 5.1E-34 1.1E-38 254.0 -0.3 212 83-335 2-251 (267)
265 PRK13549 xylose transporter AT 100.0 6.4E-34 1.4E-38 293.2 0.4 200 83-321 257-492 (506)
266 TIGR03269 met_CoM_red_A2 methy 100.0 3.9E-34 8.4E-39 295.6 -1.8 208 86-323 1-258 (520)
267 TIGR03269 met_CoM_red_A2 methy 100.0 5.9E-34 1.3E-38 294.3 -0.7 209 83-323 277-517 (520)
268 PRK09700 D-allose transporter 100.0 1E-33 2.3E-38 291.8 0.9 191 83-318 263-493 (510)
269 cd03234 ABCG_White The White s 100.0 1.4E-33 3.1E-38 261.4 1.6 191 85-316 3-226 (226)
270 cd03288 ABCC_SUR2 The SUR doma 100.0 7.5E-34 1.6E-38 268.6 -0.8 203 82-324 16-244 (257)
271 COG4619 ABC-type uncharacteriz 100.0 5.5E-34 1.2E-38 250.6 -1.6 183 85-313 3-213 (223)
272 cd03267 ABC_NatA_like Similar 100.0 9.8E-34 2.1E-38 264.7 -0.7 170 107-316 37-236 (236)
273 TIGR01271 CFTR_protein cystic 100.0 9.6E-34 2.1E-38 322.4 -1.0 200 84-323 1216-1440(1490)
274 PRK09544 znuC high-affinity zi 100.0 3.3E-33 7.3E-38 263.9 2.1 178 84-325 3-211 (251)
275 COG4107 PhnK ABC-type phosphon 100.0 3E-33 6.6E-38 247.3 0.8 219 82-334 3-252 (258)
276 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.2E-33 9.1E-38 254.8 1.6 177 84-318 5-207 (207)
277 PRK13543 cytochrome c biogenes 100.0 3.9E-33 8.4E-38 256.8 0.7 176 82-308 8-211 (214)
278 PRK03695 vitamin B12-transport 100.0 2E-33 4.4E-38 264.5 -1.3 187 86-323 1-222 (248)
279 PRK09580 sufC cysteine desulfu 100.0 5.8E-33 1.3E-37 260.2 1.3 193 85-321 1-233 (248)
280 cd03231 ABC_CcmA_heme_exporter 100.0 9.6E-33 2.1E-37 251.9 2.3 168 86-304 1-196 (201)
281 cd03214 ABC_Iron-Siderophores_ 100.0 6.6E-33 1.4E-37 248.8 0.8 151 87-315 1-179 (180)
282 TIGR02324 CP_lyasePhnL phospho 100.0 8.8E-33 1.9E-37 255.4 1.1 180 85-304 1-220 (224)
283 TIGR02633 xylG D-xylose ABC tr 100.0 5.7E-33 1.2E-37 285.5 -0.2 196 84-318 256-487 (500)
284 PRK10762 D-ribose transporter 100.0 8.2E-33 1.8E-37 284.6 -0.2 189 84-321 256-482 (501)
285 TIGR01189 ccmA heme ABC export 100.0 2.1E-32 4.5E-37 248.8 2.5 169 86-303 1-195 (198)
286 PRK13538 cytochrome c biogenes 100.0 1.6E-32 3.4E-37 250.8 1.6 171 85-303 1-199 (204)
287 PRK13540 cytochrome c biogenes 100.0 2.8E-32 6.2E-37 248.4 2.3 169 85-303 1-196 (200)
288 PLN03232 ABC transporter C fam 100.0 2.1E-32 4.6E-37 311.7 0.4 213 61-323 584-828 (1495)
289 cd03247 ABCC_cytochrome_bd The 100.0 2.4E-32 5.2E-37 244.6 0.0 152 86-316 1-178 (178)
290 cd03246 ABCC_Protease_Secretio 100.0 4E-32 8.6E-37 242.3 1.1 147 86-312 1-173 (173)
291 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.1E-32 1.8E-36 250.0 3.2 175 86-316 23-224 (224)
292 PRK10535 macrolide transporter 100.0 3E-32 6.5E-37 288.6 0.1 197 84-322 3-231 (648)
293 TIGR01166 cbiO cobalt transpor 100.0 5.6E-32 1.2E-36 244.2 1.8 152 107-294 8-186 (190)
294 TIGR01187 potA spermidine/putr 100.0 7.3E-33 1.6E-37 270.9 -4.4 173 122-335 1-202 (325)
295 cd03230 ABC_DR_subfamily_A Thi 100.0 4.6E-32 9.9E-37 241.9 0.9 145 86-312 1-173 (173)
296 cd03250 ABCC_MRP_domain1 Domai 100.0 8.7E-32 1.9E-36 245.6 2.8 174 86-311 1-204 (204)
297 TIGR01257 rim_protein retinal- 100.0 2E-32 4.3E-37 313.5 -2.2 197 83-323 926-1149(2272)
298 TIGR01257 rim_protein retinal- 100.0 2.8E-32 6.2E-37 312.2 -1.2 198 83-324 1935-2160(2272)
299 PLN03130 ABC transporter C fam 100.0 3.9E-32 8.4E-37 310.6 -0.2 212 61-323 584-828 (1622)
300 PRK10938 putative molybdenum t 100.0 1.3E-31 2.8E-36 274.9 3.3 194 82-317 257-486 (490)
301 PRK11288 araG L-arabinose tran 100.0 5.1E-32 1.1E-36 278.8 0.1 190 85-321 257-483 (501)
302 TIGR03771 anch_rpt_ABC anchore 100.0 9.4E-32 2E-36 249.3 1.6 168 112-323 1-201 (223)
303 PRK15439 autoinducer 2 ABC tra 100.0 6.9E-32 1.5E-36 278.5 0.3 190 83-321 266-490 (510)
304 PRK10982 galactose/methyl gala 100.0 1.1E-31 2.3E-36 275.6 1.6 191 83-318 248-475 (491)
305 cd03213 ABCG_EPDR ABCG transpo 100.0 8.9E-32 1.9E-36 244.5 0.6 157 85-315 3-193 (194)
306 cd03229 ABC_Class3 This class 100.0 1.2E-31 2.5E-36 240.3 0.9 147 86-311 1-178 (178)
307 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.7E-31 3.6E-36 243.7 1.9 157 86-318 1-189 (200)
308 cd03233 ABC_PDR_domain1 The pl 100.0 1.2E-31 2.6E-36 245.1 0.9 169 85-316 3-202 (202)
309 cd03215 ABC_Carb_Monos_II This 100.0 1.3E-31 2.9E-36 240.7 1.2 148 84-312 3-182 (182)
310 COG5265 ATM1 ABC-type transpor 100.0 4.7E-32 1E-36 266.1 -2.1 201 85-324 262-487 (497)
311 PRK13539 cytochrome c biogenes 100.0 1.7E-31 3.6E-36 244.8 1.6 166 85-303 2-195 (207)
312 PRK11819 putative ABC transpor 100.0 1.1E-31 2.3E-36 279.8 0.4 186 83-323 4-250 (556)
313 cd03290 ABCC_SUR1_N The SUR do 100.0 2.6E-31 5.7E-36 244.8 2.9 188 87-311 2-218 (218)
314 PRK15064 ABC transporter ATP-b 100.0 7.6E-32 1.7E-36 279.2 -1.0 185 85-323 1-242 (530)
315 PRK13545 tagH teichoic acids e 100.0 1.1E-31 2.4E-36 274.5 -0.7 189 82-324 18-233 (549)
316 PRK15064 ABC transporter ATP-b 100.0 1.9E-31 4.2E-36 276.2 0.6 181 84-324 318-526 (530)
317 cd03232 ABC_PDR_domain2 The pl 100.0 1.9E-31 4.2E-36 241.8 0.4 160 84-316 2-192 (192)
318 cd03228 ABCC_MRP_Like The MRP 100.0 3.1E-31 6.6E-36 236.1 1.6 145 86-311 1-171 (171)
319 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.1E-31 6.8E-36 254.8 0.5 202 67-324 16-248 (282)
320 PLN03211 ABC transporter G-25; 100.0 2.3E-31 5E-36 281.9 -0.8 193 87-322 70-295 (659)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-31 6E-36 276.4 -1.5 185 84-323 3-248 (552)
322 PRK13541 cytochrome c biogenes 100.0 1.1E-30 2.5E-35 237.0 2.7 165 85-303 1-192 (195)
323 PRK13546 teichoic acids export 100.0 2.6E-31 5.6E-36 253.0 -1.8 167 107-324 40-233 (264)
324 TIGR00954 3a01203 Peroxysomal 100.0 2E-30 4.4E-35 275.1 4.7 180 84-308 450-652 (659)
325 cd03223 ABCD_peroxisomal_ALDP 100.0 1.9E-30 4.1E-35 230.4 3.4 140 86-310 1-163 (166)
326 cd03216 ABC_Carb_Monos_I This 100.0 2E-30 4.4E-35 229.6 2.0 135 86-314 1-162 (163)
327 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-30 4.3E-35 245.8 2.0 186 89-327 4-227 (255)
328 COG1119 ModF ABC-type molybden 100.0 4.6E-30 1E-34 237.8 3.5 193 82-317 28-256 (257)
329 KOG0054 Multidrug resistance-a 100.0 1.6E-30 3.5E-35 287.4 -0.2 225 64-328 1106-1367(1381)
330 COG0396 sufC Cysteine desulfur 100.0 2.5E-30 5.5E-35 237.3 0.1 200 83-323 1-233 (251)
331 TIGR00957 MRP_assoc_pro multi 100.0 3.5E-30 7.5E-35 294.0 0.7 212 60-323 602-850 (1522)
332 PRK11819 putative ABC transpor 100.0 3.4E-30 7.4E-35 268.5 0.3 183 84-323 323-533 (556)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.3E-30 1.1E-34 266.8 0.3 179 83-318 320-526 (552)
334 COG4674 Uncharacterized ABC-ty 100.0 6.6E-30 1.4E-34 229.5 0.4 200 84-326 4-238 (249)
335 PRK13409 putative ATPase RIL; 100.0 1.1E-29 2.4E-34 266.1 0.9 170 83-317 338-536 (590)
336 PRK10636 putative ABC transpor 99.9 1.5E-29 3.2E-34 267.6 1.3 178 83-321 310-515 (638)
337 PRK11147 ABC transporter ATPas 99.9 1.5E-29 3.2E-34 267.6 0.7 175 84-315 318-519 (635)
338 COG1101 PhnK ABC-type uncharac 99.9 1.2E-29 2.7E-34 230.8 -0.6 190 85-315 1-230 (263)
339 PRK10636 putative ABC transpor 99.9 4.8E-29 1E-33 263.7 3.6 199 85-322 1-235 (638)
340 PRK15177 Vi polysaccharide exp 99.9 1.1E-29 2.4E-34 234.2 -1.4 160 107-321 3-190 (213)
341 COG4136 ABC-type uncharacteriz 99.9 7.5E-29 1.6E-33 214.8 3.7 166 85-294 2-194 (213)
342 TIGR00955 3a01204 The Eye Pigm 99.9 1.3E-29 2.8E-34 267.2 -1.4 177 107-321 41-254 (617)
343 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.8E-29 3.9E-34 237.9 -0.7 145 110-309 18-191 (246)
344 PRK11147 ABC transporter ATPas 99.9 6.9E-29 1.5E-33 262.5 3.3 195 84-323 2-243 (635)
345 PLN03073 ABC transporter F fam 99.9 3.5E-29 7.6E-34 267.2 -0.0 179 84-319 507-710 (718)
346 KOG0054 Multidrug resistance-a 99.9 6.6E-29 1.4E-33 274.6 2.1 207 66-323 491-731 (1381)
347 TIGR00956 3a01205 Pleiotropic 99.9 5.4E-29 1.2E-33 281.9 0.4 193 85-319 759-989 (1394)
348 COG4586 ABC-type uncharacteriz 99.9 9.2E-29 2E-33 231.8 1.3 175 101-324 37-247 (325)
349 TIGR01271 CFTR_protein cystic 99.9 8.2E-29 1.8E-33 282.2 -0.6 210 63-323 367-636 (1490)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 6.9E-28 1.5E-32 209.4 3.0 120 86-311 1-144 (144)
351 PRK13409 putative ATPase RIL; 99.9 7.6E-28 1.7E-32 252.3 2.3 173 89-309 77-286 (590)
352 TIGR00956 3a01205 Pleiotropic 99.9 4.1E-28 8.8E-33 274.8 -2.6 185 107-321 77-298 (1394)
353 PLN03140 ABC transporter G fam 99.9 1.2E-27 2.7E-32 271.0 0.2 192 85-318 867-1105(1470)
354 PLN03140 ABC transporter G fam 99.9 1.5E-27 3.2E-32 270.4 -0.8 195 107-337 181-449 (1470)
355 PLN03073 ABC transporter F fam 99.9 2.3E-27 4.9E-32 253.4 -0.4 207 85-321 177-429 (718)
356 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.5E-26 3.3E-31 202.7 2.1 130 87-311 1-157 (157)
357 COG1134 TagH ABC-type polysacc 99.9 1.7E-26 3.7E-31 214.1 0.9 171 101-324 40-237 (249)
358 cd03222 ABC_RNaseL_inhibitor T 99.9 5E-26 1.1E-30 204.7 3.9 128 89-326 4-159 (177)
359 PTZ00243 ABC transporter; Prov 99.9 8.6E-27 1.9E-31 266.3 -2.2 170 107-324 676-871 (1560)
360 cd03238 ABC_UvrA The excision 99.9 7.1E-26 1.5E-30 203.6 2.6 134 101-315 8-169 (176)
361 PF00005 ABC_tran: ABC transpo 99.9 1.2E-26 2.7E-31 197.6 -2.5 127 107-280 1-137 (137)
362 COG0488 Uup ATPase components 99.9 3E-26 6.4E-31 236.4 -0.5 199 83-322 1-239 (530)
363 KOG0061 Transporter, ABC super 99.9 4.9E-26 1.1E-30 239.4 1.1 196 85-321 25-258 (613)
364 COG4170 SapD ABC-type antimicr 99.9 6.9E-26 1.5E-30 205.9 1.0 221 83-337 1-262 (330)
365 COG4778 PhnL ABC-type phosphon 99.9 4.4E-26 9.6E-31 201.1 -0.4 188 85-304 4-223 (235)
366 COG4133 CcmA ABC-type transpor 99.9 9.9E-26 2.2E-30 201.5 1.5 161 85-293 2-188 (209)
367 KOG0059 Lipid exporter ABCA1 a 99.9 2.1E-25 4.6E-30 243.4 3.2 196 84-322 563-786 (885)
368 COG4615 PvdE ABC-type sideroph 99.9 1.9E-24 4.2E-29 211.1 2.0 182 85-316 322-530 (546)
369 cd03270 ABC_UvrA_I The excisio 99.9 2.1E-24 4.6E-29 200.8 2.1 75 225-316 118-226 (226)
370 COG0488 Uup ATPase components 99.9 1.4E-23 3E-28 216.7 1.9 172 83-314 319-515 (530)
371 COG4138 BtuD ABC-type cobalami 99.9 6.5E-24 1.4E-28 188.2 -0.8 186 85-325 3-223 (248)
372 cd03271 ABC_UvrA_II The excisi 99.9 1.1E-22 2.4E-27 193.4 2.7 188 107-318 11-261 (261)
373 cd03278 ABC_SMC_barmotin Barmo 99.8 1.7E-22 3.8E-27 184.4 1.9 141 108-305 14-187 (197)
374 cd03273 ABC_SMC2_euk Eukaryoti 99.8 3.4E-22 7.4E-27 188.4 -0.0 169 114-304 23-239 (251)
375 COG4178 ABC-type uncharacteriz 99.8 1.3E-20 2.8E-25 195.0 4.9 169 83-303 390-583 (604)
376 cd03279 ABC_sbcCD SbcCD and ot 99.8 1E-20 2.2E-25 174.3 2.2 167 85-311 5-210 (213)
377 COG1129 MglA ABC-type sugar tr 99.8 8.9E-21 1.9E-25 192.7 0.1 192 82-319 260-486 (500)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.8 5E-20 1.1E-24 172.1 2.4 54 254-308 152-234 (243)
379 KOG0927 Predicted transporter 99.8 6.9E-20 1.5E-24 185.0 3.5 178 82-318 386-591 (614)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.8 4.3E-20 9.4E-25 170.6 -1.2 55 254-309 121-204 (212)
381 KOG0060 Long-chain acyl-CoA tr 99.7 6.4E-19 1.4E-23 179.2 2.8 186 84-308 432-640 (659)
382 cd03275 ABC_SMC1_euk Eukaryoti 99.7 5.5E-19 1.2E-23 166.4 -0.4 51 255-305 150-230 (247)
383 PRK00349 uvrA excinuclease ABC 99.7 6.2E-19 1.4E-23 192.4 -0.1 92 225-334 811-937 (943)
384 COG3845 ABC-type uncharacteriz 99.7 9.4E-19 2E-23 175.7 0.7 198 82-320 254-489 (501)
385 PRK00635 excinuclease ABC subu 99.7 6.6E-19 1.4E-23 200.2 -0.8 87 218-323 784-906 (1809)
386 KOG0927 Predicted transporter 99.7 2E-18 4.4E-23 174.5 2.4 196 85-324 75-310 (614)
387 KOG0065 Pleiotropic drug resis 99.7 3.5E-18 7.6E-23 187.0 1.1 182 101-320 804-1018(1391)
388 cd03240 ABC_Rad50 The catalyti 99.7 4.1E-18 8.9E-23 156.4 -1.3 54 254-308 109-196 (204)
389 KOG2355 Predicted ABC-type tra 99.7 4.2E-17 9.1E-22 148.3 5.0 190 83-318 11-232 (291)
390 COG1245 Predicted ATPase, RNas 99.7 1.7E-17 3.6E-22 165.2 2.2 158 85-304 342-527 (591)
391 TIGR00630 uvra excinuclease AB 99.7 1.1E-17 2.5E-22 182.3 -0.1 81 224-321 808-923 (924)
392 KOG0062 ATPase component of AB 99.6 5.3E-17 1.1E-21 163.5 2.1 180 86-324 81-286 (582)
393 KOG0064 Peroxisomal long-chain 99.6 4.8E-17 1.1E-21 164.0 -0.2 174 86-303 482-678 (728)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.6 1E-16 2.3E-21 146.5 1.0 147 107-311 12-192 (198)
395 KOG0062 ATPase component of AB 99.6 1.6E-16 3.4E-21 160.1 1.6 173 83-314 360-559 (582)
396 cd03280 ABC_MutS2 MutS2 homolo 99.6 3.3E-16 7E-21 143.0 2.0 61 255-316 86-172 (200)
397 KOG0065 Pleiotropic drug resis 99.6 3.6E-16 7.9E-21 171.3 -0.7 199 107-338 131-374 (1391)
398 COG2401 ABC-type ATPase fused 99.5 1.6E-15 3.6E-20 149.7 2.0 158 107-313 399-588 (593)
399 COG1245 Predicted ATPase, RNas 99.5 3E-15 6.5E-20 149.2 0.4 168 90-305 79-285 (591)
400 KOG0066 eIF2-interacting prote 99.5 1.1E-14 2.3E-19 144.6 2.6 154 82-293 583-759 (807)
401 COG0178 UvrA Excinuclease ATPa 99.4 8.3E-14 1.8E-18 146.7 4.0 80 254-335 816-930 (935)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.4 1.4E-13 3.1E-18 127.2 4.1 35 107-142 14-48 (213)
403 PRK00635 excinuclease ABC subu 99.4 9.7E-14 2.1E-18 158.5 0.9 93 224-334 1679-1806(1809)
404 cd00820 PEPCK_HprK Phosphoenol 99.3 6.8E-13 1.5E-17 109.9 2.9 76 107-210 5-80 (107)
405 cd03243 ABC_MutS_homologs The 99.3 6.7E-13 1.4E-17 121.3 2.1 63 257-320 88-176 (202)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.3 3.4E-13 7.4E-18 125.5 0.1 125 107-316 20-174 (222)
407 cd03241 ABC_RecN RecN ATPase i 99.3 8.7E-13 1.9E-17 126.4 2.0 57 255-312 165-250 (276)
408 KOG0066 eIF2-interacting prote 99.3 2.9E-13 6.3E-18 134.6 -2.3 193 86-314 265-489 (807)
409 cd03239 ABC_SMC_head The struc 99.3 1.8E-12 3.9E-17 116.8 2.4 47 261-308 95-171 (178)
410 cd03227 ABC_Class2 ABC-type Cl 99.2 5.5E-12 1.2E-16 111.5 1.9 49 260-309 77-155 (162)
411 TIGR02858 spore_III_AA stage I 99.1 8.6E-12 1.9E-16 119.5 1.2 39 118-161 112-150 (270)
412 KOG0063 RNAse L inhibitor, ABC 99.1 1.5E-11 3.3E-16 122.2 0.6 140 109-304 354-528 (592)
413 cd03242 ABC_RecF RecF is a rec 99.1 1.4E-11 3E-16 117.8 0.2 35 107-142 12-46 (270)
414 PRK00349 uvrA excinuclease ABC 99.0 3.2E-11 6.9E-16 132.4 -0.2 88 220-325 466-587 (943)
415 TIGR00630 uvra excinuclease AB 99.0 4.8E-11 1E-15 130.8 0.0 71 254-325 481-585 (924)
416 cd03282 ABC_MSH4_euk MutS4 hom 99.0 2E-10 4.4E-15 105.7 3.8 36 107-142 19-54 (204)
417 smart00534 MUTSac ATPase domai 98.9 5.7E-10 1.2E-14 100.8 2.8 49 255-303 56-131 (185)
418 cd03283 ABC_MutS-like MutS-lik 98.9 3.9E-10 8.5E-15 103.3 1.5 34 107-142 17-50 (199)
419 TIGR03238 dnd_assoc_3 dnd syst 98.9 6.3E-10 1.4E-14 113.2 2.4 48 107-161 22-70 (504)
420 cd03284 ABC_MutS1 MutS1 homolo 98.8 8.9E-10 1.9E-14 102.2 1.1 35 107-142 21-55 (216)
421 cd01128 rho_factor Transcripti 98.8 3.1E-09 6.8E-14 100.7 4.1 31 112-142 11-41 (249)
422 TIGR01069 mutS2 MutS2 family p 98.8 3.4E-09 7.3E-14 114.8 4.2 31 110-140 314-345 (771)
423 PRK07721 fliI flagellum-specif 98.8 2.5E-09 5.4E-14 108.9 3.0 51 101-160 146-196 (438)
424 PF02463 SMC_N: RecF/RecN/SMC 98.8 7.4E-09 1.6E-13 95.3 5.4 45 260-304 136-209 (220)
425 PRK06793 fliI flagellum-specif 98.6 1.4E-08 3.1E-13 103.0 2.8 65 85-160 130-194 (432)
426 KOG0063 RNAse L inhibitor, ABC 98.5 1.6E-08 3.5E-13 101.0 -0.8 160 114-305 97-285 (592)
427 cd03287 ABC_MSH3_euk MutS3 hom 98.5 8.7E-08 1.9E-12 89.4 3.9 43 107-154 21-64 (222)
428 PRK00409 recombination and DNA 98.5 1E-07 2.2E-12 103.7 3.9 57 255-313 385-468 (782)
429 PRK06002 fliI flagellum-specif 98.4 1.3E-07 2.9E-12 96.2 4.3 67 82-159 136-202 (450)
430 COG0178 UvrA Excinuclease ATPa 98.4 4.2E-08 9.2E-13 104.3 0.7 72 254-326 475-580 (935)
431 cd01130 VirB11-like_ATPase Typ 98.4 9.2E-08 2E-12 86.3 1.9 43 110-157 18-60 (186)
432 TIGR00767 rho transcription te 98.4 1.5E-07 3.2E-12 94.5 3.1 75 63-142 105-193 (415)
433 PRK13695 putative NTPase; Prov 98.4 1.1E-07 2.4E-12 84.6 1.9 31 284-315 125-156 (174)
434 TIGR02788 VirB11 P-type DNA tr 98.3 2.2E-07 4.8E-12 90.6 2.6 42 110-156 137-178 (308)
435 PRK06315 type III secretion sy 98.2 3.4E-07 7.4E-12 93.3 1.1 50 101-158 152-201 (442)
436 cd03281 ABC_MSH5_euk MutS5 hom 98.2 1.2E-06 2.5E-11 81.2 4.5 30 110-139 22-51 (213)
437 TIGR02655 circ_KaiC circadian 98.2 1.9E-07 4.1E-12 96.6 -0.9 30 113-142 17-48 (484)
438 PRK07594 type III secretion sy 98.2 1.4E-06 3E-11 88.7 4.2 65 84-159 128-192 (433)
439 PRK10078 ribose 1,5-bisphospho 98.2 9.1E-07 2E-11 79.7 2.4 36 117-160 2-37 (186)
440 PF13555 AAA_29: P-loop contai 98.1 1E-06 2.3E-11 66.0 1.7 33 110-142 15-48 (62)
441 PRK09825 idnK D-gluconate kina 98.1 1.6E-06 3.4E-11 78.0 3.2 37 116-161 2-38 (176)
442 PTZ00132 GTP-binding nuclear p 98.1 1.3E-06 2.7E-11 80.1 2.6 24 119-142 11-35 (215)
443 TIGR00235 udk uridine kinase. 98.1 1.6E-06 3.4E-11 79.5 3.1 29 114-142 3-31 (207)
444 PRK00300 gmk guanylate kinase; 98.1 1.8E-06 3.9E-11 78.4 2.8 28 115-142 3-30 (205)
445 cd01136 ATPase_flagellum-secre 98.1 2.7E-06 5.9E-11 83.7 3.7 58 91-159 49-106 (326)
446 PRK07196 fliI flagellum-specif 98.0 2.6E-06 5.6E-11 86.7 3.4 38 101-142 143-180 (434)
447 COG3910 Predicted ATPase [Gene 98.0 4.6E-06 1E-10 75.7 4.6 40 101-142 23-62 (233)
448 PRK08149 ATP synthase SpaL; Va 98.0 2.5E-06 5.3E-11 86.7 2.7 52 101-161 139-193 (428)
449 PRK09270 nucleoside triphospha 98.0 3.5E-06 7.6E-11 78.5 3.1 34 115-153 31-64 (229)
450 PRK09862 putative ATP-dependen 98.0 3.6E-06 7.8E-11 87.3 3.2 63 88-161 187-249 (506)
451 PLN02796 D-glycerate 3-kinase 98.0 2.7E-06 5.8E-11 84.1 1.5 53 107-161 82-142 (347)
452 TIGR03498 FliI_clade3 flagella 97.9 6.4E-06 1.4E-10 83.6 3.5 64 86-160 115-178 (418)
453 TIGR00618 sbcc exonuclease Sbc 97.9 3.5E-06 7.5E-11 94.7 1.2 56 253-309 943-1035(1042)
454 TIGR03496 FliI_clade1 flagella 97.9 7.7E-06 1.7E-10 82.9 3.5 65 84-159 110-174 (411)
455 TIGR00634 recN DNA repair prot 97.9 3.3E-06 7.2E-11 88.9 0.9 52 259-311 439-519 (563)
456 PRK09099 type III secretion sy 97.9 7.3E-06 1.6E-10 83.6 3.3 51 101-160 151-201 (441)
457 TIGR02546 III_secr_ATP type II 97.9 9.3E-06 2E-10 82.6 4.1 51 101-160 133-183 (422)
458 TIGR01026 fliI_yscN ATPase Fli 97.9 8.4E-06 1.8E-10 83.3 3.7 50 101-159 151-200 (440)
459 PRK07960 fliI flagellum-specif 97.9 9.5E-06 2.1E-10 82.8 3.5 52 101-161 163-217 (455)
460 TIGR03497 FliI_clade2 flagella 97.9 8E-06 1.7E-10 82.8 2.8 59 91-160 117-175 (413)
461 TIGR02524 dot_icm_DotB Dot/Icm 97.8 1.1E-05 2.5E-10 80.3 3.7 28 115-142 132-159 (358)
462 PRK01889 GTPase RsgA; Reviewed 97.8 6.1E-06 1.3E-10 82.2 1.6 48 107-159 185-232 (356)
463 cd01124 KaiC KaiC is a circadi 97.8 7.9E-06 1.7E-10 72.7 2.0 53 255-308 66-163 (187)
464 PHA02562 46 endonuclease subun 97.8 3.8E-06 8.3E-11 87.8 -0.5 54 255-309 463-551 (562)
465 TIGR02322 phosphon_PhnN phosph 97.8 1.3E-05 2.9E-10 71.2 3.0 26 117-142 1-26 (179)
466 TIGR00554 panK_bact pantothena 97.8 1.2E-05 2.6E-10 77.9 2.9 41 117-160 62-102 (290)
467 TIGR02168 SMC_prok_B chromosom 97.8 6.5E-06 1.4E-10 92.3 1.1 61 245-305 1074-1163(1179)
468 PRK08472 fliI flagellum-specif 97.8 1.3E-05 2.8E-10 81.6 3.1 64 87-161 133-196 (434)
469 PRK09183 transposase/IS protei 97.8 2.6E-05 5.5E-10 74.4 4.8 56 86-142 72-127 (259)
470 cd02025 PanK Pantothenate kina 97.8 1.2E-05 2.6E-10 74.9 2.4 24 119-142 1-24 (220)
471 PRK10869 recombination and rep 97.8 7.5E-06 1.6E-10 86.1 1.1 51 260-311 430-509 (553)
472 cd00879 Sar1 Sar1 subfamily. 97.8 1.5E-05 3.2E-10 71.1 2.6 32 107-139 10-41 (190)
473 PRK10416 signal recognition pa 97.7 2.2E-05 4.7E-10 77.2 3.8 41 115-160 112-152 (318)
474 PRK05922 type III secretion sy 97.7 1.9E-05 4E-10 80.5 3.2 50 101-159 145-194 (434)
475 cd02023 UMPK Uridine monophosp 97.7 1.7E-05 3.8E-10 71.8 2.5 24 119-142 1-24 (198)
476 PRK06995 flhF flagellar biosyn 97.7 1.8E-05 3.8E-10 81.7 2.8 41 107-152 246-286 (484)
477 TIGR03263 guanyl_kin guanylate 97.7 1.6E-05 3.4E-10 70.7 2.1 26 117-142 1-26 (180)
478 PF13476 AAA_23: AAA domain; P 97.7 1.5E-05 3.3E-10 70.9 2.0 36 107-143 10-45 (202)
479 PRK05688 fliI flagellum-specif 97.7 1.6E-05 3.5E-10 81.2 2.4 38 101-142 156-193 (451)
480 PRK15494 era GTPase Era; Provi 97.7 2.6E-05 5.5E-10 77.2 3.5 54 82-140 15-75 (339)
481 cd04155 Arl3 Arl3 subfamily. 97.7 2.5E-05 5.5E-10 68.2 2.8 23 118-140 15-37 (173)
482 PRK03846 adenylylsulfate kinas 97.7 2.9E-05 6.3E-10 70.7 3.2 41 115-160 22-63 (198)
483 PRK05480 uridine/cytidine kina 97.7 3.4E-05 7.3E-10 70.6 3.5 28 115-142 4-31 (209)
484 cd02026 PRK Phosphoribulokinas 97.6 2.8E-05 6E-10 74.8 2.8 32 119-155 1-32 (273)
485 PRK04863 mukB cell division pr 97.6 3.3E-05 7.2E-10 88.9 3.0 47 107-159 18-64 (1486)
486 PRK14723 flhF flagellar biosyn 97.6 4.4E-05 9.5E-10 82.5 3.6 48 107-159 175-224 (767)
487 PRK08972 fliI flagellum-specif 97.6 3.1E-05 6.7E-10 78.9 2.1 38 101-142 150-187 (444)
488 PF03193 DUF258: Protein of un 97.6 3.7E-05 8E-10 68.4 2.1 37 113-155 32-68 (161)
489 PRK00098 GTPase RsgA; Reviewed 97.5 4.5E-05 9.7E-10 74.1 2.6 35 116-155 163-197 (298)
490 PRK00454 engB GTP-binding prot 97.5 0.00011 2.4E-09 65.5 4.9 22 119-140 26-47 (196)
491 PLN02318 phosphoribulokinase/u 97.5 5.8E-05 1.3E-09 79.3 3.4 39 115-159 63-101 (656)
492 cd01854 YjeQ_engC YjeQ/EngC. 97.5 4.5E-05 9.9E-10 73.7 2.4 40 110-155 155-194 (287)
493 cd04159 Arl10_like Arl10-like 97.5 5E-05 1.1E-09 64.2 2.2 23 120-142 2-24 (159)
494 TIGR01360 aden_kin_iso1 adenyl 97.5 3.9E-05 8.5E-10 68.2 1.5 35 117-156 3-40 (188)
495 PLN03046 D-glycerate 3-kinase; 97.5 6.4E-05 1.4E-09 76.1 3.1 41 118-160 213-253 (460)
496 PRK10246 exonuclease subunit S 97.5 3.8E-05 8.2E-10 86.4 1.6 49 255-303 944-1027(1047)
497 PRK00889 adenylylsulfate kinas 97.5 8.3E-05 1.8E-09 66.0 3.3 38 115-157 2-40 (175)
498 TIGR02169 SMC_prok_A chromosom 97.5 4.3E-05 9.3E-10 86.0 1.7 61 245-305 1059-1148(1164)
499 TIGR00368 Mg chelatase-related 97.5 6.4E-05 1.4E-09 78.1 2.7 50 107-161 201-250 (499)
500 PRK06820 type III secretion sy 97.4 7.5E-05 1.6E-09 76.3 3.0 49 101-158 151-199 (440)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-53 Score=387.68 Aligned_cols=210 Identities=19% Similarity=0.259 Sum_probs=189.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |++||++|.+||+++|+||||||||||+|||++|.. |++|+|+++|.++..
T Consensus 1 ~mi~i~~l~K~fg~~---~V---Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~- 68 (240)
T COG1126 1 MMIEIKNLSKSFGDK---EV---LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGD- 68 (240)
T ss_pred CeEEEEeeeEEeCCe---EE---ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccc-
Confidence 478999999999873 67 455999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...+...|..+|+|||++++||+ ++.+|+.++.....+.++++.++++.++|+++||.+
T Consensus 69 -------------~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~------- 128 (240)
T COG1126 69 -------------KKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD------- 128 (240)
T ss_pred -------------hhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-------
Confidence 11455678899999999999999 999999999877777788899999999999999999
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.++.||.+||||||||||||||| |||||+||+ |.|+|+||| ..
T Consensus 129 ----------ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 129 ----------KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred ----------hhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 45999999999999999999999 999999875 999999999 78
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
|...||||+ +|++|++++.|+++++|.+|.++.++.|+..
T Consensus 199 Ar~Vadrvi-Fmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 199 AREVADRVI-FMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred HHHhhheEE-EeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999995 7999999999999999999998877777653
No 2
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-49 Score=384.60 Aligned_cols=212 Identities=15% Similarity=0.202 Sum_probs=189.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++.++++|++++|++ ..+ ++|+||+|++||+++|+||||||||||||+|+|+.. |++|+|.++|+++.
T Consensus 3 ~~~l~i~~v~k~yg~---~~a---v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~- 70 (352)
T COG3842 3 KPALEIRNVSKSFGD---FTA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDIT- 70 (352)
T ss_pred CceEEEEeeeeecCC---eeE---EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 457999999999984 467 555999999999999999999999999999999999 99999999999987
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+ +....+.+++|||+..+||+ +|.+||+||+...+...+.+.++++.++++.++|.+
T Consensus 71 --------------~--lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------ 128 (352)
T COG3842 71 --------------D--VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------ 128 (352)
T ss_pred --------------C--CChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh------
Confidence 1 33445679999999999999 999999999994444445668899999999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|++||||||||||||||| |||.++||. |+|.|+|||
T Consensus 129 -----------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 129 -----------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred -----------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 67999999999999999999999 999999763 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
.++..++|||+ +|++|+|.+.|+|++++..|.+.+++.|+...+.+
T Consensus 198 eEAl~msDrI~-Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l 243 (352)
T COG3842 198 EEALAMSDRIA-VMNDGRIEQVGTPEEIYERPATRFVADFIGESNIF 243 (352)
T ss_pred HHHhhhccceE-EccCCceeecCCHHHHhhCcchHHHHHHhCcceee
Confidence 68999999996 59999999999999999999999988888865554
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-49 Score=374.79 Aligned_cols=213 Identities=14% Similarity=0.160 Sum_probs=189.8
Q ss_pred ccccccceeeecCc--ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~--~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
||++++++|.|..+ ..+.|+ +||||+|++||++||||.||||||||+|||++|.+ |++|+|.++|.++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al---~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTAL---DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceeee---ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEeccc
Confidence 58999999999752 225684 45999999999999999999999999999999999 999999999988762
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+ ....+...|+.++|+||+++++.. |+++||+|++...+ .++++.++++.++|+.+||.+
T Consensus 73 --------l----~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~d------ 133 (339)
T COG1135 73 --------L----SEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSD------ 133 (339)
T ss_pred --------C----ChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChh------
Confidence 1 135567788999999999999986 99999999998655 677889999999999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++||.+|||||||||+||||| |||||+||+ |.||++|||
T Consensus 134 -----------k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 134 -----------KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred -----------hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 45999999999999999999999 999999986 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
+.+.++|||++ ||++|++++.|+..++|.+|.++.++.++..
T Consensus 203 ~Vvk~ic~rVa-vm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~ 244 (339)
T COG1135 203 EVVKRICDRVA-VLDQGRLVEEGTVSEVFANPKHAITQEFIGE 244 (339)
T ss_pred HHHHHHhhhhe-EeeCCEEEEeccHHHhhcCcchHHHHHHHHh
Confidence 67889999997 5999999999999999999998877777664
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=361.44 Aligned_cols=210 Identities=19% Similarity=0.257 Sum_probs=189.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++|+|++. .+ ++++||+|++||+++++|||||||||++|+|++++. |++|+|+++|+++.
T Consensus 1 MI~~~nvsk~y~~~---~a---v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~--- 66 (309)
T COG1125 1 MIEFENVSKRYGNK---KA---VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDIS--- 66 (309)
T ss_pred CceeeeeehhcCCc---ee---eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeecc---
Confidence 68999999999863 56 455999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
++....+|+.+|||-|...+||+ +|.+||+.-.... +-+++..++++.++|+.+||++..
T Consensus 67 ------------~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~-~w~k~~i~~r~~ELl~lvgL~p~~------ 127 (309)
T COG1125 67 ------------DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL-GWDKERIKKRADELLDLVGLDPSE------ 127 (309)
T ss_pred ------------cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHhCCCHHH------
Confidence 56778899999999999999999 9999999865533 335678889999999999998743
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+++++|++|||||||||.+|||| |||+++||+ ++|||+||| ++
T Consensus 128 ---------~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 128 ---------YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred ---------HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 68999999999999999999999 999999875 999999999 79
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 337 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~ 337 (361)
|.+++|||++ |++|++++.++|++++.+|.++++..++..-
T Consensus 199 A~kLadri~v-m~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 199 ALKLADRIAV-MDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred HHhhhceEEE-ecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 9999999974 9999999999999999999988877766543
No 5
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-48 Score=350.43 Aligned_cols=219 Identities=20% Similarity=0.228 Sum_probs=193.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.++++||++.|+.. +| |++||++|++++++|||||||||||||||+++++.+....+..+|+|.++|+++.
T Consensus 5 ~~~~~~~~l~~yYg~~---~a---L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~- 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDK---HA---LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY- 77 (253)
T ss_pred cceeEecceeEEECch---hh---hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc-
Confidence 4578999999999864 67 5559999999999999999999999999999999985544456799999999986
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...+.+.++|+.+|+|||.|+.||.+|++||++|.+.++..+ ++..+.++..|+.++|.+++.
T Consensus 78 ------------~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVK---- 140 (253)
T COG1117 78 ------------DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVK---- 140 (253)
T ss_pred ------------CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhH----
Confidence 124567788999999999999999999999999999877666 788999999999999998763
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
+.+++.+..||||||||+|||||| |||||+||+ ..||++||| ..+
T Consensus 141 ---------DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 141 ---------DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred ---------HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 367888999999999999999999 999999875 899999999 588
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
++++|+++ +++.|++++.|+++++|.+|.+..++.++.
T Consensus 212 aRvSD~ta-Ff~~G~LvE~g~T~~iF~~P~~~~TedYis 249 (253)
T COG1117 212 ARVSDYTA-FFYLGELVEFGPTDKIFTNPKHKRTEDYIS 249 (253)
T ss_pred HHHhHhhh-hhcccEEEEEcCHHhhhcCccHHHHHHHhc
Confidence 89999997 599999999999999999999887766553
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-47 Score=371.91 Aligned_cols=210 Identities=16% Similarity=0.180 Sum_probs=187.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|..|+++||++.|++.. + |+++||+|++||+++|+||||||||||||+|+||.+ |++|+|+++|++++
T Consensus 1 M~~i~l~~v~K~yg~~~---~---l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt- 68 (338)
T COG3839 1 MAELELKNVRKSFGSFE---V---LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVT- 68 (338)
T ss_pred CcEEEEeeeEEEcCCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 45799999999998742 5 566999999999999999999999999999999999 99999999999987
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. +.+..+.+++|||+..++|+ +|++||+|++... +.++++.++++.++++.+++.+
T Consensus 69 --------------~--l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~-~~~k~ei~~rV~eva~~L~l~~------ 125 (338)
T COG3839 69 --------------D--LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEH------ 125 (338)
T ss_pred --------------C--CChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC-CCchHHHHHHHHHHHHHcCChh------
Confidence 2 22334678999999999999 9999999999843 4567888999999999999999
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||||||||| |||.|+||. +.|+|+|||
T Consensus 126 -----------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 126 -----------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred -----------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 67999999999999999999999 999999763 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhH
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 339 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~ 339 (361)
.+|..++|||+ +|++|+|.+.|+|.+++..|.+.+++.++....|
T Consensus 195 ~EAmtladri~-Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p~m 239 (338)
T COG3839 195 VEAMTLADRIV-VMNDGRIQQVGTPLELYERPANLFVAGFIGSPPM 239 (338)
T ss_pred HHHHhhCCEEE-EEeCCeeeecCChHHHhhCccchhhhhhcCChhh
Confidence 58889999996 5999999999999999999999999888886433
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=336.34 Aligned_cols=177 Identities=16% Similarity=0.193 Sum_probs=156.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++++++.|+. .++ |+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+.+.
T Consensus 2 ~~l~i~~v~~~f~~---~~v---l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~-- 68 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEV---LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT-- 68 (248)
T ss_pred ceEEEEeeEEEeCc---eEE---eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--
Confidence 46899999999987 467 555999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....++||||+..++|. |+.+||.+++.... .++.+.++++.++++.+||.+
T Consensus 69 ------------------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~------- 122 (248)
T COG1116 69 ------------------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAG------- 122 (248)
T ss_pred ------------------CCCCCEEEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcc-------
Confidence 223457889999999999 99999999998543 445666778999999999998
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.+++|++|||||||||+||||| |||+++||. ++||++||| +
T Consensus 123 ----------~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 123 ----------FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred ----------hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 56999999999999999999999 999999763 899999999 6
Q ss_pred ccccccchhhHhhhhh
Q 018083 295 DLLSLTDRARIRTYLG 310 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G 310 (361)
+|..++|||+ +|.++
T Consensus 193 EAv~LsdRiv-vl~~~ 207 (248)
T COG1116 193 EAVYLADRVV-VLSNR 207 (248)
T ss_pred HHHhhhCEEE-EecCC
Confidence 8999999995 58884
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-45 Score=339.92 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=187.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|++++|+++|++. .+ ++++||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|.++..
T Consensus 6 ~~~I~vr~v~~~fG~~---~I---ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFGDR---VI---LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecCCE---EE---ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 5689999999999874 55 555999999999999999999999999999999999 999999999999862
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .-..+..+..++++||.-.+|.. +|++||+|++.-+...+++..++.+...|+.+||....
T Consensus 75 ls------------~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~---- 138 (263)
T COG1127 75 LS------------EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA---- 138 (263)
T ss_pred cC------------HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh----
Confidence 11 23455678889999999999988 99999999998888888899999999999999999842
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++.+|++|||||++|++||||| ||||+|||+ |.|++||||
T Consensus 139 ------------~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 139 ------------ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred ------------hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 6999999999999999999999 999999986 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+.+..+|||++ ++.+|+|+..|+++++... .++++++|+.
T Consensus 207 ~s~~~i~Drv~-~L~~gkv~~~Gt~~el~~s-d~P~v~qf~~ 246 (263)
T COG1127 207 DSLLTIADRVA-VLADGKVIAEGTPEELLAS-DDPWVRQFFN 246 (263)
T ss_pred HHHHhhhceEE-EEeCCEEEEeCCHHHHHhC-CCHHHHHHhc
Confidence 68889999996 5999999999999999885 3456665554
No 9
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=343.62 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=187.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc---ccC
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 161 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~---~i~ 161 (361)
+|+++++++.|+.. .+ ++|||++|+.||.+||+||||||||||+++|+||.. |++|.|.++|+ |..
T Consensus 2 ~i~i~~~~~~~~~~---~a---~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 2 SIRINNVKKRFGAF---GA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVS 70 (345)
T ss_pred ceeehhhhhhcccc---cc---cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchh
Confidence 47899999999874 66 555999999999999999999999999999999999 99999999998 443
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. +....+.+|+|||+..+|++ +|.+||+||+...+. .++..++.++.++|+.+.|..
T Consensus 71 ---------------~--~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~---- 129 (345)
T COG1118 71 ---------------N--LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---- 129 (345)
T ss_pred ---------------c--cchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc----
Confidence 1 12223568999999999999 999999999976532 235677889999999999998
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
+.+++|.+||||||||||+|||| |||+.+||. |.|+++|||
T Consensus 130 -------------la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 130 -------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred -------------hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 67999999999999999999999 999999763 899999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHHHHHHhh
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 346 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 346 (361)
+++.++|||++ +|++|+|...|+++++++.|..+.+..++...+.+......
T Consensus 197 D~eea~~ladrvv-vl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n~~~~~v~~ 250 (345)
T COG1118 197 DQEEALELADRVV-VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVIL 250 (345)
T ss_pred CHHHHHhhcceEE-EecCCeeeeeCCHHHHhcCCCccceecccccceeccceeec
Confidence 68899999995 69999999999999999999999888887766655544443
No 10
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=332.43 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=175.8
Q ss_pred ccccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++++++|+++.|+.+. +.++ |++|||+|.+||+++|+||||||||||.++|+|+.+ |++|+|.++|.+..
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~---l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~ 72 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHA---LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLA 72 (252)
T ss_pred CceEEEeceEEEecCCcchhhh---hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccC
Confidence 35799999999998753 2246 555999999999999999999999999999999999 99999999998765
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. -.....++.+.+||||+. +-|. +|.+-|..++..++ -...++++.++|+.+||.+.
T Consensus 73 ~~--------------~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~-- 133 (252)
T COG1124 73 PK--------------KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPS-- 133 (252)
T ss_pred cc--------------ccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHH--
Confidence 10 001134556788999985 3344 77777776666422 23445569999999999875
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
+++++|++|||||+||+|||||| |||||+||. +.|+|+||
T Consensus 134 --------------~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~Is 199 (252)
T COG1124 134 --------------FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS 199 (252)
T ss_pred --------------HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEe
Confidence 57999999999999999999999 999999763 88999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
| ..+..+||||+ ||++|++++.+++++++..|.+++++.++.+..
T Consensus 200 Hdl~~v~~~cdRi~-Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~~ 246 (252)
T COG1124 200 HDLALVEHMCDRIA-VMDNGQIVEIGPTEELLSHPSHPYTRELLEAVP 246 (252)
T ss_pred CcHHHHHHHhhhee-eeeCCeEEEeechhhhhcCCccHHHHHHHHhhh
Confidence 9 56779999997 599999999999999999999999887766543
No 11
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-44 Score=338.06 Aligned_cols=220 Identities=19% Similarity=0.208 Sum_probs=187.6
Q ss_pred ccccccceeeecCcce------------------eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccc
Q 018083 85 LTDAKNKILSYTPGAW------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF 146 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~------------------~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~ 146 (361)
.|+++|+++-|+.... .-.+-|+.|+||+|++||++.|+|-||||||||+++|++|.+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie---- 79 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE---- 79 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC----
Confidence 4777888877764310 001223566999999999999999999999999999999999
Q ss_pred ccccceeeecccccCcceEeEeeeecCCCcceeeeecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhh
Q 018083 147 ASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRM 224 (361)
Q Consensus 147 ~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v 224 (361)
|++|+|+++|.++..-. .-.+.+.| ..+++|||++.++|+ +|.+|+.||+... +.++.+.++++
T Consensus 80 -pt~G~ilv~g~di~~~~------------~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~-Gv~~~er~~~a 145 (386)
T COG4175 80 -PTRGEILVDGKDIAKLS------------AAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ-GVPKAEREERA 145 (386)
T ss_pred -CCCceEEECCcchhcCC------------HHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec-CCCHHHHHHHH
Confidence 99999999999885110 12233443 468999999999999 9999999999854 56788899999
Q ss_pred cccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------
Q 018083 225 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------- 284 (361)
Q Consensus 225 ~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------- 284 (361)
.++++.+||.. +.+++|++|||||||||.||||| |||+|+||+
T Consensus 146 ~~~l~~VgL~~-----------------~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl 208 (386)
T COG4175 146 LEALELVGLEG-----------------YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208 (386)
T ss_pred HHHHHHcCchh-----------------hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence 99999999998 56999999999999999999999 999999876
Q ss_pred ------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 285 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 285 ------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
++||++||| +++.++.|||++ |++|+|++.|+|++|+.+|.+.|+..|+.-.+..
T Consensus 209 ~Lq~~l~KTIvFitHDLdEAlriG~rIai-mkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~ 271 (386)
T COG4175 209 ELQAKLKKTIVFITHDLDEALRIGDRIAI-MKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRS 271 (386)
T ss_pred HHHHHhCCeEEEEecCHHHHHhccceEEE-ecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChh
Confidence 899999999 799999999986 9999999999999999999999998888755443
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=324.28 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=172.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||++.|+++ .++ |++|||+|++||+++||||||||||||+|+|+|+.+ |++|+|.++|.++...
T Consensus 2 ~~i~~~nl~k~yp~~--~~a---L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGG--HQA---LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCC--cee---eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 479999999999755 366 666999999999999999999999999999999999 9999999999887521
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhcccccccCCCc
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
. +-.+...|..+||+||.+++.+. ++.+||..|...+. +...++.+.++.++|+++|+.+
T Consensus 72 ~------------~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~ 139 (258)
T COG3638 72 K------------GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD 139 (258)
T ss_pred c------------hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH
Confidence 1 23466778899999999999988 99999998876332 1234566788889999999998
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvI 289 (361)
.+.++..+|||||||||+||||| |||+++||+ |.|||
T Consensus 140 -----------------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi 202 (258)
T COG3638 140 -----------------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVI 202 (258)
T ss_pred -----------------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEE
Confidence 45899999999999999999999 999999875 99999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+.-| +.+.++||||+ -|++|+|+.+|+++++
T Consensus 203 ~nLH~vdlA~~Y~~Rii-gl~~G~ivfDg~~~el 235 (258)
T COG3638 203 VNLHQVDLAKKYADRII-GLKAGRIVFDGPASEL 235 (258)
T ss_pred EEechHHHHHHHHhhhe-EecCCcEEEeCChhhh
Confidence 9999 78899999995 5999999999999764
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-43 Score=324.69 Aligned_cols=190 Identities=20% Similarity=0.250 Sum_probs=155.5
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++|+++.|+.+. .+++ |+++||+|++||+++|+||||||||||+++|.|+.+ |++|.|.++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~---L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEA---LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL 72 (226)
T ss_pred CcEEeeeEEEeccCCcceEe---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC
Confidence 478999999997543 2567 555999999999999999999999999999999999 9999999999887611
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. .-.... .+..+|+|||+.++++. ++.+||.+++..... .....++++..+++.+|+.+..
T Consensus 73 ~------------~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~-~~~~~~~~~~~l~~~lgl~~~~---- 135 (226)
T COG1136 73 S------------EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK-SAGRRKRAAEELLEVLGLEDRL---- 135 (226)
T ss_pred C------------HHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC-ChhHHHHHHHHHHHhcCChhhh----
Confidence 0 011112 34568999999999988 999999987654322 2225677888899999998732
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~ 294 (361)
.+++|.+||||||||||||||| ||||.+||. |+||||||| .
T Consensus 136 ------------~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 136 ------------LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred ------------ccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 2489999999999999999999 999999763 889999999 5
Q ss_pred ccccccchhhHhhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~i 312 (361)
.++.+|||++ .+++|++
T Consensus 204 ~lA~~~dr~i-~l~dG~~ 220 (226)
T COG1136 204 ELAKYADRVI-ELKDGKI 220 (226)
T ss_pred HHHHhCCEEE-EEeCCee
Confidence 7889999995 6999983
No 14
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-43 Score=361.71 Aligned_cols=231 Identities=10% Similarity=0.138 Sum_probs=201.3
Q ss_pred hhhhhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 59 VDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
..--++.+|+-|+++-+|.++.. ..+.|+++||+|.|+.+...++ |+|+||+|+|||++|||||||||||
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V---lk~lsfti~pGe~vALVGPSGsGKS 508 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV---LKNLSFTIRPGEVVALVGPSGSGKS 508 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh---hcCceeeeCCCCEEEEECCCCCCHH
Confidence 33445666888998888775433 3457999999999987765677 5559999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
|++++|.++|+ |++|+|.+||.++. ++....+|+.+++|.|+|.+|..+|.+||.||..
T Consensus 509 TiasLL~rfY~-----PtsG~IllDG~~i~---------------~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~- 567 (716)
T KOG0058|consen 509 TIASLLLRFYD-----PTSGRILLDGVPIS---------------DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD- 567 (716)
T ss_pred HHHHHHHHhcC-----CCCCeEEECCeehh---------------hcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-
Confidence 99999999999 99999999999997 5777778899999999999999999999999876
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
....++++.++++++-++.+...++.|.++|+++. .+||||||||+|||||| ||.||+|
T Consensus 568 ------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG------~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 568 ------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG------SQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred ------CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc------ccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 44567788889999988888888999999999864 48999999999999999 9999997
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|. ++|||+|.| -...+.||+|+ |+++|++++.|++++++..+.
T Consensus 636 DaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv-vi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV-VIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred chhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE-EEcCCeEEecccHHHHhhCcc
Confidence 63 899999999 55667799995 699999999999999998875
No 15
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=332.01 Aligned_cols=226 Identities=17% Similarity=0.211 Sum_probs=183.1
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++||+.+|... ..+.|++| |||+|++||++||||+|||||||+.++|+|+++.......+|+|.|+|+++...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~---vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDG---VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEEEec---eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 47899999999653 24678666 999999999999999999999999999999997321125789999999986511
Q ss_pred eEeEeeeecCCCcceeeeecC-CCCcccccchHHH--HH-HHHhccccceeEEecC-CChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMI--KL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~--~~-ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. .-.....| +.++++||++... |. +|.+.+...+..+... .+++.++++.++|+.+++.+.
T Consensus 78 ~------------~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~-- 143 (316)
T COG0444 78 S------------EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP-- 143 (316)
T ss_pred C------------HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--
Confidence 1 00111233 3588999998643 33 7888887776655444 356678899999999999862
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+++++||++|||||||||+||.|| ||||++||- |+++|+||
T Consensus 144 ------------~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT 211 (316)
T COG0444 144 ------------ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT 211 (316)
T ss_pred ------------HHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2367999999999999999999999 999999752 99999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
| ..++++||||+ ||+.|+|++.|+++++|.+|.|+||+.++..+-.+
T Consensus 212 HDl~vva~~aDri~-VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 212 HDLGVVAEIADRVA-VMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred CCHHHHHHhcceEE-EEECcEEEEeCCHHHHhcCCCChHHHHHHHhCccc
Confidence 9 47889999997 59999999999999999999999999998877665
No 16
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.5e-42 Score=306.64 Aligned_cols=192 Identities=18% Similarity=0.200 Sum_probs=165.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++||++.|+.+ .+|| +||||+|++||++-|+||||||||||+|+|++..+ |++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y~~g--~~aL---~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~-- 68 (223)
T COG2884 1 MIRFENVSKAYPGG--REAL---RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSR-- 68 (223)
T ss_pred CeeehhhhhhcCCC--chhh---hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeeccc--
Confidence 58999999999887 3684 55999999999999999999999999999999999 999999999999862
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.... .+.-+|+.+|+|||+..+.+. ++++||++++...+ ..+.+.++++.++|+.+||.++
T Consensus 69 -l~~~---------~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G-~~~~~i~~rV~~~L~~VgL~~k------- 130 (223)
T COG2884 69 -LKGR---------EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG-KPPREIRRRVSEVLDLVGLKHK------- 130 (223)
T ss_pred -cccc---------ccchhhheeeeEeeeccccccchHhhhhhhhhhccC-CCHHHHHHHHHHHHHHhccchh-------
Confidence 1111 222367889999999999888 99999999988653 4567889999999999999994
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
++..|.+||||||||++||||+ ||||.+||+ |+||||.|| ..+
T Consensus 131 ----------~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 131 ----------ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred ----------hhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 4899999999999999999999 999999875 999999999 455
Q ss_pred ccccchhhHhhhhhhhcCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~ 317 (361)
.++--|++ .+++|+++....
T Consensus 201 ~~~~~rvl-~l~~Grl~~d~~ 220 (223)
T COG2884 201 NRMRHRVL-ALEDGRLVRDES 220 (223)
T ss_pred HhccCcEE-EEeCCEEEeccc
Confidence 57677885 599999987643
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.3e-42 Score=325.31 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=168.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++||++.|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.++|+++.
T Consensus 2 ~L~~~~ls~~y~~~---~i---l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~--- 67 (258)
T COG1120 2 MLEVENLSFGYGGK---PI---LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIA--- 67 (258)
T ss_pred eeEEEEEEEEECCe---eE---EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchh---
Confidence 68999999999853 45 666999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEe---cCCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.+...+..+.++||+|.+... ..+|.+-|.+|...+. ....++.++.+.++|+.+++.+
T Consensus 68 ------------~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~----- 130 (258)
T COG1120 68 ------------SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH----- 130 (258)
T ss_pred ------------hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH-----
Confidence 455566677889999986543 4488888888754321 1224555667889999999998
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++...+||||||||+.||||| ||||+.||- |+|||+++|
T Consensus 131 ------------la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 131 ------------LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred ------------HhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 66999999999999999999999 999999752 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.++++||+++ +|++|++++.|+|+++++..
T Consensus 199 lN~A~ryad~~i-~lk~G~i~a~G~p~evlT~e 230 (258)
T COG1120 199 LNLAARYADHLI-LLKDGKIVAQGTPEEVLTEE 230 (258)
T ss_pred HHHHHHhCCEEE-EEECCeEEeecCcchhcCHH
Confidence 68999999995 59999999999999888754
No 18
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.9e-42 Score=363.40 Aligned_cols=232 Identities=12% Similarity=0.152 Sum_probs=199.9
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccC
Q 018083 55 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 126 (361)
Q Consensus 55 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpn 126 (361)
|...+.-+....|+.++++.++|.... ..+.++++|++|+|+...+ .+ |+|+||+|++||++||+|+|
T Consensus 433 ~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~v---L~~isL~I~~Ge~vaIvG~S 508 (709)
T COG2274 433 WTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDP-PV---LEDLSLEIPPGEKVAIVGRS 508 (709)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCc-ch---hhceeEEeCCCCEEEEECCC
Confidence 444455566677999999988773322 2235999999999987643 45 66699999999999999999
Q ss_pred CCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccc
Q 018083 127 GSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVR 206 (361)
Q Consensus 127 GSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~ 206 (361)
|||||||+|+|.|+++ |++|+|.+||.|+. .+.....|+.+++|+|++.+|..++.||++
T Consensus 509 GsGKSTL~KLL~gly~-----p~~G~I~~dg~dl~---------------~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~ 568 (709)
T COG2274 509 GSGKSTLLKLLLGLYK-----PQQGRILLDGVDLN---------------DIDLASLRRQVGYVLQDPFLFSGSIRENIA 568 (709)
T ss_pred CCCHHHHHHHHhcCCC-----CCCceEEECCEeHH---------------hcCHHHHHhheeEEcccchhhcCcHHHHHh
Confidence 9999999999999999 99999999999987 578888999999999999999999999999
Q ss_pred cceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CC
Q 018083 207 HGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 277 (361)
Q Consensus 207 ~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 277 (361)
++.+ ....+++.++++..|.++.+...++.|.+.|.+ ....||||||||++||||| ||
T Consensus 569 l~~p-------~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E------~G~~LSGGQrQrlalARaLl~~P~ILlLDE 635 (709)
T COG2274 569 LGNP-------EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE------GGANLSGGQRQRLALARALLSKPKILLLDE 635 (709)
T ss_pred cCCC-------CCCHHHHHHHHHHhCcHHHHHhccccccccccc------CCCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 7655 334578888999999999888888888886655 4668999999999999999 99
Q ss_pred CceeecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 278 PYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 278 Pt~~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|||+||. |+|+|+||| ....+.||||+ ||++|+|+++|++++++..
T Consensus 636 aTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIi-Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 636 ATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRII-VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred cccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEE-EccCCceeccCCHHHHHHh
Confidence 9999874 899999999 67778999995 6999999999999999876
No 19
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=8.6e-42 Score=303.11 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=167.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
++.++++.++|+... -..+++|++||++||+||||||||||+|+|+|+.. |.+|.|+++|++.+.
T Consensus 1 ~l~L~~V~~~y~~~~--------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~-- 65 (231)
T COG3840 1 MLALDDVRFSYGHLP--------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTA-- 65 (231)
T ss_pred CccccceEEeeCcce--------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCc--
Confidence 467899999997532 12888999999999999999999999999999999 999999999999862
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
..+..+-++++||+.++|.+ +|..||.+|+.-.-.. ..+.+++++.++.++|+..
T Consensus 66 ---------------~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~-------- 121 (231)
T COG3840 66 ---------------SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAG-------- 121 (231)
T ss_pred ---------------CCcccCChhhhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhh--------
Confidence 11234457889999999999 9999999987532222 2566788999999999999
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++.|.+||||||||+|+||+| |||+++|++ +.|++|||| ++
T Consensus 122 ---------~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D 192 (231)
T COG3840 122 ---------FLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED 192 (231)
T ss_pred ---------HhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 66999999999999999999999 999999865 899999999 89
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
+.+++||++ ++++|+|...|++++++....
T Consensus 193 a~~ia~~~~-fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 193 AARIADRVV-FLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HHHhhhceE-EEeCCEEEeeccHHHHhccCC
Confidence 999999995 699999999999999887654
No 20
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=340.59 Aligned_cols=205 Identities=16% Similarity=0.181 Sum_probs=173.3
Q ss_pred cccccccceeee-cCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y-~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|++++| ++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 2 ~~l~i~~l~~~~~~~~---~~---l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~- 69 (356)
T PRK11650 2 AGLKLQAVRKSYDGKT---QV---IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVN- 69 (356)
T ss_pred CEEEEEeEEEEeCCCC---EE---EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECC-
Confidence 468999999999 442 45 666999999999999999999999999999999999 99999999998875
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
... ..++.++||||++.+|+. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~~--~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 126 (356)
T PRK11650 70 --------------ELE--PADRDIAMVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP------ 126 (356)
T ss_pred --------------CCC--HHHCCEEEEeCCccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 111 123568999999999987 9999999886522 2334455678889999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||++||||| |||+++||. +.|+|+|||
T Consensus 127 -----------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 127 -----------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred -----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56999999999999999999999 999999753 799999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||+++ +|++|++++.|++++++..|.+.++..++.
T Consensus 196 ~ea~~l~D~i~-vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 196 VEAMTLADRVV-VMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred HHHHHhCCEEE-EEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 57889999996 599999999999999999887665544443
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.7e-42 Score=337.85 Aligned_cols=212 Identities=14% Similarity=0.157 Sum_probs=174.1
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
||+++|++++|+.+. ..++ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~---L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 589999999996321 1356 666999999999999999999999999999999999 9999999999887510
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. ...+...++.++|+||++.+++. ++.+|+.++.... ..++.+.++++.++++.+||.+
T Consensus 73 ~------------~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~------- 132 (343)
T TIGR02314 73 S------------NSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGD------- 132 (343)
T ss_pred C------------HHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 01112245678999999988876 9999999876422 2334556778889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||+ |.|||+||| +
T Consensus 133 ----------~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 133 ----------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45999999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
.+.++||+++ +|++|++++.|++++++..|.++.++.++.
T Consensus 203 ~v~~~~d~v~-vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~ 242 (343)
T TIGR02314 203 VVKRICDCVA-VISNGELIEQGTVSEIFSHPKTPLAQKFIR 242 (343)
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHcCCCcHHHHHHHh
Confidence 6779999996 599999999999999998887665555443
No 22
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-42 Score=302.63 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=185.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++.|+++|++++|+.. ++|+| ||++-++|+.+.|||.||||||||++||+=+.. |+.|+|.++|+.+.
T Consensus 3 ~~~~l~v~dlHK~~G~~---eVLKG---vSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~ 71 (256)
T COG4598 3 AENALEVEDLHKRYGEH---EVLKG---VSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIR 71 (256)
T ss_pred cccceehhHHHhhcccc---hhhcc---eeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEE
Confidence 34579999999999874 67555 999999999999999999999999999999999 99999999999875
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
...-......+ .....++..|+..++|||++++.+. ++.+|+.....-..+.++.+..++++.+|.++|+.++.
T Consensus 72 ~k~~~~G~l~~--ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~--- 146 (256)
T COG4598 72 LKRDKDGQLKP--ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA--- 146 (256)
T ss_pred eeeCCCCCeee--CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh---
Confidence 21100000000 0112344567778999999999999 99999987654334556778889999999999999844
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
+.||..|||||+||++||||| |||||+||+ |+|++++||
T Consensus 147 --------------~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 147 --------------DAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred --------------hcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 899999999999999999999 999999875 999999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
..+...+..++ ++++|.|-+.|+|+++|.+|..+..+.|+.
T Consensus 213 ~FAR~Vss~v~-fLh~G~iEE~G~P~qvf~nP~S~RlkqFls 253 (256)
T COG4598 213 GFARDVSSHVI-FLHQGKIEEEGPPEQVFGNPQSPRLKQFLS 253 (256)
T ss_pred hHHHhhhhheE-EeecceecccCChHHHhcCCCCHHHHHHHH
Confidence 68889999994 799999999999999999998876666554
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.7e-42 Score=337.71 Aligned_cols=206 Identities=14% Similarity=0.142 Sum_probs=175.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 2 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~- 69 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAF---TA---LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDIT- 69 (353)
T ss_pred CcEEEEEEEEEEeCCe---EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECC-
Confidence 4579999999999753 45 666999999999999999999999999999999999 99999999998774
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
... ..++.++||||++.+|+. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~~--~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~------ 126 (353)
T TIGR03265 70 --------------RLP--PQKRDYGIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPG------ 126 (353)
T ss_pred --------------CCC--HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc------
Confidence 111 124568999999999987 9999999986522 2334556778999999999988
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| |||+++||. +.|+|+|||
T Consensus 127 -----------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 127 -----------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 56999999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+|||++ +|++|++++.|++++++..|.+.++..++.
T Consensus 196 ~ea~~l~d~i~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 196 EEALSMADRIV-VMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 57889999996 599999999999999999887666554444
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-42 Score=337.55 Aligned_cols=207 Identities=13% Similarity=0.137 Sum_probs=177.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 3 ~~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~ 71 (351)
T PRK11432 3 QKNFVVLKNITKRFGSN---TV---IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVT 71 (351)
T ss_pred CCcEEEEEeEEEEECCe---EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECC
Confidence 35689999999999752 46 566999999999999999999999999999999999 99999999998875
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .. ..++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.+++.+
T Consensus 72 ~---------------~~--~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~----- 128 (351)
T PRK11432 72 H---------------RS--IQQRDICMVFQSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAG----- 128 (351)
T ss_pred C---------------CC--HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 11 224568999999999987 9999999986532 2334566778899999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. ++|+|+|||
T Consensus 129 ------------~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 129 ------------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred ------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 56999999999999999999999 999999753 799999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||||+ +|++|++++.|++++++..|.+.++..++.
T Consensus 197 ~~e~~~laD~i~-vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 197 QSEAFAVSDTVI-VMNKGKIMQIGSPQELYRQPASRFMASFMG 238 (351)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence 57889999996 599999999999999999998776666555
No 25
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-41 Score=317.46 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=174.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++++++++|+++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~--~~~---l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~- 70 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAA---LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSS- 70 (235)
T ss_pred ceEEEEEEEEEcCCC--cee---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccc-
Confidence 478999999999876 356 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......++.+++|||+|. +|..+|.+.++|+....+ .+.++.++++.++++.+++.+
T Consensus 71 -------------~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g-~~~~e~~~rv~~~l~~vgl~~------ 130 (235)
T COG1122 71 -------------EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG-LPREEIEERVAEALELVGLEE------ 130 (235)
T ss_pred -------------hhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC-CCHHHHHHHHHHHHHHcCchh------
Confidence 1345567888999999995 566699999999998543 455678899999999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++.|++||||||||+|||.+| ||||++||+ |+|+|++||
T Consensus 131 -----------~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~ 199 (235)
T COG1122 131 -----------LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL 199 (235)
T ss_pred -----------hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH
Confidence 56999999999999999999998 999999864 689999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|+++.+|++++++..+
T Consensus 200 ~~~~~~ad~v~-vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 200 ELVLEYADRVV-VLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHhhCCEEE-EEECCEEeecCCHHHHhhhh
Confidence 68889999996 69999999999999888765
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.5e-41 Score=338.00 Aligned_cols=208 Identities=14% Similarity=0.174 Sum_probs=176.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 11 ~~~~L~l~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~ 79 (375)
T PRK09452 11 LSPLVELRGISKSFDGK---EV---ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDIT 79 (375)
T ss_pred CCceEEEEEEEEEECCe---EE---EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 55679999999999753 45 666999999999999999999999999999999999 99999999998774
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... ..++.++||||++.+|+. ++.+||.+++... ..+..+.++++.++++.++|.+
T Consensus 80 ---------------~~~--~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~----- 136 (375)
T PRK09452 80 ---------------HVP--AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEE----- 136 (375)
T ss_pred ---------------CCC--HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 111 123568999999999988 9999999986522 2233455677888999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
+++++|.+||||||||++||||| |||+++||. +.|+|+|||
T Consensus 137 ------------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 137 ------------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56999999999999999999999 999999753 799999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
.++..+||||+ +|++|++++.|++++++..|.+.+++.++..
T Consensus 205 ~~ea~~laDri~-vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g~ 247 (375)
T PRK09452 205 QEEALTMSDRIV-VMRDGRIEQDGTPREIYEEPKNLFVARFIGE 247 (375)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhcCc
Confidence 57889999996 5999999999999999999987776666553
No 27
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6e-41 Score=341.37 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=183.0
Q ss_pred hccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 82 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
..++++++||+++|... ..+.|+++ |||+|.+||++||||+||||||||.|+|+|+++ |++|.|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~---VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDD---VSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeee---eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceE
Confidence 45789999999999742 12567555 999999999999999999999999999999999 999999
Q ss_pred eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccc
Q 018083 154 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 230 (361)
Q Consensus 154 ~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~ 230 (361)
.++|.+.... .-.....+..+.+||||+. |.|. +|.+.+..++..+......+.++++.++++.
T Consensus 349 ~~~g~~~~~~-------------~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 349 IFDGQDLDLT-------------GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLEL 415 (539)
T ss_pred EEeCcccccc-------------cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHH
Confidence 9999883210 1123345667788999986 4454 8999998888765544445666789999999
Q ss_pred cCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------
Q 018083 231 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------- 284 (361)
Q Consensus 231 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------- 284 (361)
++|.+. +++++|++||||||||+|||||| |||+|+||.
T Consensus 416 VgL~~~----------------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 416 VGLPPE----------------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred cCCCHH----------------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 999864 47999999999999999999999 999999864
Q ss_pred CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 285 DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 285 g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
|.|.|+||| ..+..+||||+ ||+.|+|++.|+.+++|..|.++|++.++.+..
T Consensus 480 g~t~lfISHDl~vV~~i~drv~-vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 480 GLTYLFISHDLAVVRYIADRVA-VMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred CCEEEEEeCCHHHHHhhCceEE-EEECCeEEEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 999999999 57789999996 599999999999999999999999987776543
No 28
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.8e-41 Score=330.97 Aligned_cols=205 Identities=13% Similarity=0.208 Sum_probs=173.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 2 ~L~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~-- 68 (353)
T PRK10851 2 SIEIANIKKSFGRT---QV---LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR-- 68 (353)
T ss_pred EEEEEEEEEEeCCe---EE---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 48899999999753 45 666999999999999999999999999999999999 999999999988741
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE---ecCCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. ...++.++|+||++.+++. ++.+|+.++.... ...+..+.++++.++++.++|.+
T Consensus 69 -------------~--~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----- 128 (353)
T PRK10851 69 -------------L--HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH----- 128 (353)
T ss_pred -------------C--CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 1123568999999999987 9999999876532 12233455678889999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. ++|+|+|||
T Consensus 129 ------------~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 129 ------------LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56999999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||||+ +|++|++++.|++++++..|.+.++..++.
T Consensus 197 ~~ea~~~~Dri~-vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 197 QEEAMEVADRVV-VMSQGNIEQAGTPDQVWREPATRFVLEFMG 238 (353)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 57889999996 599999999999999999887766655554
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=310.40 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=162.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|+.. ++ |+||||+|++|++++|+||||||||||+|+|+|+++ |.+|+|.++|++...
T Consensus 2 ~~~i~v~nl~v~y~~~---~v---l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~ 70 (254)
T COG1121 2 MPMIEVENLTVSYGNR---PV---LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRK 70 (254)
T ss_pred CcEEEEeeeEEEECCE---ee---eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccc
Confidence 4679999999999864 35 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHHHHHhccccceeEEe---cCCChhhhhhhcccccccCCCcc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
...+..++||||... -||.+|.+-+..+..... ....+..++.+.++|+.+||.+
T Consensus 71 ------------------~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~- 131 (254)
T COG1121 71 ------------------RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED- 131 (254)
T ss_pred ------------------cccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-
Confidence 112356899999652 356688888888743221 1122445789999999999998
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 291 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIii 291 (361)
+.++...+|||||+|||.||||| |||++++|. |+|||||
T Consensus 132 ----------------~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~v 195 (254)
T COG1121 132 ----------------LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMV 195 (254)
T ss_pred ----------------hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 66999999999999999999999 999999642 9999999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|| ..+..+||+| + +=+++++..|+++++++.+.
T Consensus 196 tHDL~~v~~~~D~v-i-~Ln~~~~~~G~~~~~~~~~~ 230 (254)
T COG1121 196 THDLGLVMAYFDRV-I-CLNRHLIASGPPEEVLTEEN 230 (254)
T ss_pred eCCcHHhHhhCCEE-E-EEcCeeEeccChhhccCHHH
Confidence 99 5788999999 4 55779999999999988653
No 30
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=9.3e-41 Score=327.40 Aligned_cols=220 Identities=13% Similarity=0.148 Sum_probs=175.8
Q ss_pred hccccccccceeeecCc----------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 82 IGSLTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~----------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
.+++|+++||+++|+.+ ....+ ++++||+|++||+++|+|+||||||||+++|+|+++ |++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G 76 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKA---VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDG 76 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCc
Confidence 45789999999999631 12356 555999999999999999999999999999999999 9999
Q ss_pred eeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHH-HHHhccccceeEEe-cCCChhhhhhhccc
Q 018083 152 QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCK 227 (361)
Q Consensus 152 ~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~-~~~~~~~~~~v~~~ 227 (361)
+|.++|+++.... ...+...++.++||+|++ .+++. ++.+|+.+++..+. ..++.+.++++.++
T Consensus 77 ~I~~~G~~i~~~~------------~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~ 144 (331)
T PRK15079 77 EVAWLGKDLLGMK------------DDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAM 144 (331)
T ss_pred EEEECCEECCcCC------------HHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999998875100 001223456789999997 35554 89999887653221 23345566778889
Q ss_pred ccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------------
Q 018083 228 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 284 (361)
Q Consensus 228 l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------- 284 (361)
++.+++.+. +++++|++|||||+||++||||| ||||++||.
T Consensus 145 l~~vgl~~~----------------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 145 MLKVGLLPN----------------LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred HHHcCCChH----------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 999999542 46899999999999999999999 999999752
Q ss_pred ---CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 285 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 285 ---g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
+.|+|+||| ..+..+||||+ +|++|++++.|++++++..|.+++++.++..+.
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~-vl~~G~ive~g~~~~i~~~~~~py~~~l~~~~~ 266 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVL-VMYLGHAVELGTYDEVYHNPLHPYTKALMSAVP 266 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHcCCCCHHHHHHHhhCC
Confidence 789999999 56778999996 599999999999999999998888776665443
No 31
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=331.40 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=176.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 16 ~~~~l~l~~v~~~~~~~---~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~ 84 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQ---HA---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLS 84 (377)
T ss_pred CCceEEEEeEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 35579999999999752 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... ..++.++||||++.+|+. ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 85 ---------------~~~--~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~----- 141 (377)
T PRK11607 85 ---------------HVP--PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQE----- 141 (377)
T ss_pred ---------------CCC--HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 111 234568999999999988 9999999876522 2234556678889999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. +.|+|++||
T Consensus 142 ------------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 142 ------------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred ------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 56999999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
.++..+|||++ +|++|++++.|++++++..|.+.+++.++.
T Consensus 210 ~~ea~~laDri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 210 QEEAMTMAGRIA-IMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251 (377)
T ss_pred HHHHHHhCCEEE-EEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence 57789999996 599999999999999999988766555554
No 32
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=325.07 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=169.6
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++||++.|+... ..++ |+||||+|++||+++|+||||||||||+++|+|+++.. ..|++|+|.++|+++..
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRA---VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQR 77 (326)
T ss_pred ceEEEeCeEEEECCCCccEEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCc
Confidence 4789999999997532 1357 55599999999999999999999999999999999721 01489999999988741
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. ...+... +..+++|||++. +.+. ++.+++...+..+......+.++++.++++.++|.+.
T Consensus 78 ~~------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~-- 143 (326)
T PRK11022 78 IS------------EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP-- 143 (326)
T ss_pred CC------------HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--
Confidence 00 0011111 235788999874 3333 5555554443322222334556788899999999751
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
..++++++++||||||||++||||| ||||++||. |.|+|+||
T Consensus 144 ------------~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT 211 (326)
T PRK11022 144 ------------ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT 211 (326)
T ss_pred ------------HHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1146899999999999999999999 999999753 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
| ..+..+||||+ +|++|+|++.|++++++..|.+++++.++..+.
T Consensus 212 Hdl~~~~~~adri~-vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~~~ 258 (326)
T PRK11022 212 HDLALVAEAAHKII-VMYAGQVVETGKAHDIFRAPRHPYTQALLRALP 258 (326)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEECCHHHHhhCCCChHHHHHHHhCc
Confidence 9 46678999996 599999999999999999999999877765443
No 33
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=324.87 Aligned_cols=219 Identities=14% Similarity=0.138 Sum_probs=173.4
Q ss_pred ccccccccceeeecCc-------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 83 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+++|+++||++.|+.. ....+ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~ 74 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKA---LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYY 74 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEE
Confidence 4579999999999631 11357 555999999999999999999999999999999999 99999999
Q ss_pred cccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccC
Q 018083 156 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 156 ~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
+|+++.... ...+...++.+++|||++. +.+. ++.+++..+...+....+.+.++++.++++.++
T Consensus 75 ~g~~l~~~~------------~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 142 (327)
T PRK11308 75 QGQDLLKAD------------PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVG 142 (327)
T ss_pred CCEEcCcCC------------HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCC
Confidence 998874100 0112234567899999973 4443 677776654432222234456678899999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
|.+. .+++++++||||||||++||||| ||||++||. |.
T Consensus 143 L~~~----------------~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 206 (327)
T PRK11308 143 LRPE----------------HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL 206 (327)
T ss_pred CChH----------------HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9642 45899999999999999999999 999999752 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
|||+||| ..+..+||||+ +|++|++++.|++++++..|.++|++.++....
T Consensus 207 til~iTHdl~~~~~~adrv~-vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 207 SYVFISHDLSVVEHIADEVM-VMYLGRCVEKGTKEQIFNNPRHPYTQALLSATP 259 (327)
T ss_pred EEEEEeCCHHHHHHhCCEEE-EEECCEEEEECCHHHHhcCCCCHHHHHHHHhCC
Confidence 9999999 46668999996 599999999999999999999998877766543
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.8e-40 Score=328.83 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=172.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc--ceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~--G~I~i~G~~i~~ 162 (361)
.|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~- 72 (362)
T TIGR03258 5 GIRIDHLRVAYGAN---TV---LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLT- 72 (362)
T ss_pred EEEEEEEEEEECCe---EE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECC-
Confidence 48899999999753 46 666999999999999999999999999999999999 999 99999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
... ..++.+++|||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 73 --------------~~~--~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------ 129 (362)
T TIGR03258 73 --------------HAP--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGD------ 129 (362)
T ss_pred --------------CCC--HHHCCEEEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCc------
Confidence 111 123468999999999988 9999999886522 2334556678899999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC------------------CccEEEEEc-
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~------------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| |||+++||. |+|+|+|||
T Consensus 130 -----------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 130 -----------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 56999999999999999999999 999999642 589999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+++..+||||+ +|++|++++.|++++++..|.+.+++.++.
T Consensus 199 ~~ea~~l~dri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 199 QDDALTLADKAG-IMKDGRLAAHGEPQALYDAPADGFAAEFLG 240 (362)
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence 57889999996 599999999999999999886655544444
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-40 Score=303.94 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=168.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+++++++|+++|++ ..|+++ |||+|++||+++||||||||||||+|+|+|+|+ |++|+|.++|++++.
T Consensus 2 ~~lL~v~~l~k~FGG---l~Al~~---Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~ 70 (250)
T COG0411 2 TPLLEVRGLSKRFGG---LTAVND---VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITG 70 (250)
T ss_pred CceeeeccceeecCC---EEEEec---eeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCC
Confidence 357899999999987 578555 999999999999999999999999999999999 999999999999872
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE-----------ecCCChhhhhhhccccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI-----------RRSDSSSLRNRMRCKAH 229 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~-----------~~~~~~~~~~~v~~~l~ 229 (361)
...+.. +..+...||++.+|+. |+.+|+..+.... .....++..+++.++|+
T Consensus 71 ---------------l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 71 ---------------LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135 (250)
T ss_pred ---------------CCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHH
Confidence 121111 2223446899999888 9999998874321 01134677889999999
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+||.+ .++++..+||+|||+|+.||||| |||.+|+.+
T Consensus 136 ~vgL~~-----------------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 136 FVGLGE-----------------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198 (250)
T ss_pred HcCCch-----------------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc
Confidence 999998 56999999999999999999999 999999532
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|.||++|.| +.+..+||||+ ||+.|+++++|+|+++.++|.
T Consensus 199 ~g~tillIEHdM~~Vm~l~dri~-Vl~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 199 GGVTILLIEHDMKLVMGLADRIV-VLNYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred CCcEEEEEEeccHHHhhhccEEE-eccCCcCcccCCHHHHhcCHH
Confidence 699999999 68889999996 699999999999999988875
No 36
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=326.87 Aligned_cols=205 Identities=12% Similarity=0.159 Sum_probs=170.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~i~~l~~~~~~~---~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~- 69 (369)
T PRK11000 2 ASVTLRNVTKAYGDV---VI---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND- 69 (369)
T ss_pred CEEEEEEEEEEeCCe---EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC-
Confidence 468999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ..+..++|++|++.+++. ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 70 --------------~~--~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~------- 125 (369)
T PRK11000 70 --------------VP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAH------- 125 (369)
T ss_pred --------------CC--HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 11 113458899999988876 9999999875422 2233455677889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| |||+++||. +.|+|++|| +
T Consensus 126 ----------~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 126 ----------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
++..+||+++ +|++|++++.|++++++..|...++..++.
T Consensus 196 ~~~~~~d~i~-vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 196 EAMTLADKIV-VLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 6789999996 599999999999999998887655544443
No 37
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.3e-40 Score=354.67 Aligned_cols=230 Identities=15% Similarity=0.198 Sum_probs=194.5
Q ss_pred hhhhhhhHHHHHHHHhHHHHHhh---------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCC
Q 018083 59 VDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 129 (361)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~---------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSG 129 (361)
...|.++.++.++++..|.+... ..+.++++||+|+|+.+..+++|+| +||+|++|+++|||||||||
T Consensus 315 ~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g---~sl~i~~G~~valVG~SGsG 391 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKG---VSLKIPSGQTVALVGPSGSG 391 (1228)
T ss_pred hccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCC---eEEEeCCCCEEEEECCCCCC
Confidence 44455566888888777654322 3457999999999988765677555 99999999999999999999
Q ss_pred cchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccce
Q 018083 130 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 209 (361)
Q Consensus 130 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~ 209 (361)
|||++++|.|+|+ |++|+|++||.++. .+...++|..+++|.|+|.+|..+|.+||.+|.
T Consensus 392 KST~i~LL~Rfyd-----P~~G~V~idG~di~---------------~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~ 451 (1228)
T KOG0055|consen 392 KSTLIQLLARFYD-----PTSGEVLIDGEDIR---------------NLNLKWLRSQIGLVSQEPVLFATTIRENIRYGK 451 (1228)
T ss_pred HHHHHHHHHHhcC-----CCCceEEEcCccch---------------hcchHHHHhhcCeeeechhhhcccHHHHHhcCC
Confidence 9999999999999 99999999999997 577788999999999999999999999999876
Q ss_pred eEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCce
Q 018083 210 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 280 (361)
Q Consensus 210 ~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~ 280 (361)
+ ++.++++.+++++++..+.+..-++.|.+.|.+. ..+||||||||+|||||| ||||+
T Consensus 452 ~-------dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~------g~qLSGGQKQRIAIARalv~~P~ILLLDEaTS 518 (1228)
T KOG0055|consen 452 P-------DATREEIEEAAKAANAHDFILKLPDGYDTLVGER------GVQLSGGQKQRIAIARALVRNPKILLLDEATS 518 (1228)
T ss_pred C-------cccHHHHHHHHHHccHHHHHHhhHHhhcccccCC------CCCCChHHHHHHHHHHHHHhCCCEEEecCccc
Confidence 5 4567788888888888776666666777766554 346999999999999999 99999
Q ss_pred eecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 281 SFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 281 ~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+||. |+|.|+|+| -...+.||+|+ ||++|+|++.|+|++++..+
T Consensus 519 aLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~-v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 519 ALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIA-VMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred ccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEE-EEECCEEEEecCHHHHHhcc
Confidence 9874 999999999 34445599996 69999999999999998875
No 38
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.2e-40 Score=341.38 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=186.8
Q ss_pred hhHHHHHHHHhHHHHHhhh------ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhh
Q 018083 64 RDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~------~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
...|+.++++.+++.++.. ...|+++|++++|+++. ++ |+|+||+|++||++|||||||||||||+++|
T Consensus 301 a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~--~v---l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL 375 (567)
T COG1132 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK--PV---LKDISFSIEPGEKVAIVGPSGSGKSTLIKLL 375 (567)
T ss_pred HHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCC--cc---ccCceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3449999998766544332 13489999999998543 45 6669999999999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC
Q 018083 138 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 217 (361)
Q Consensus 138 ~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~ 217 (361)
+|+++ |++|+|.+||+++. .+...++|..+++|+|++.+|..||.+||.++..
T Consensus 376 ~r~~~-----~~~G~I~idg~dI~---------------~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~------- 428 (567)
T COG1132 376 LRLYD-----PTSGEILIDGIDIR---------------DISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP------- 428 (567)
T ss_pred hccCC-----CCCCeEEECCEehh---------------hcCHHHHHHhccEEcccceeecccHHHHHhcCCC-------
Confidence 99999 99999999999997 5777888999999999999999999999998755
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---- 284 (361)
+..++++.++++.+++++.+...++++.++|++ ....||||||||++||||+ ||||+++|.
T Consensus 429 ~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge------~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 429 DATDEEIEEALKLANAHEFIANLPDGYDTIVGE------RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcccccceecC------CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 244577888888888887766667777777764 3557999999999999999 999999763
Q ss_pred -----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+|+| -...+.||+|. ||++|++++.|+|++++..
T Consensus 503 ~I~~~l~~l~~~rT~iiIaHRlsti~~aD~Ii-Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 503 LIQDALKKLLKGRTTLIIAHRLSTIKNADRII-VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHHHHHhcCCEEEEEeccHhHHHhCCEEE-EEECCEEEEecCHHHHHHc
Confidence 679999999 34445599995 6999999999999999876
No 39
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.6e-40 Score=321.79 Aligned_cols=222 Identities=13% Similarity=0.145 Sum_probs=171.5
Q ss_pred hccccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecc
Q 018083 82 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNS 157 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G 157 (361)
.+++|+++||++.|+.. ....+ +++|||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G 80 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTA---VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNG 80 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEE---EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECC
Confidence 55689999999999632 12357 555999999999999999999999999999999998 74 99999999
Q ss_pred cccCcceEeEeeeecCCCcceeeeecC-CCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCC
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl 233 (361)
+++.... ...+...+ ..++||||++. +.+. ++.+++.+....+......+..+++.++++.++|
T Consensus 81 ~~i~~~~------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL 148 (330)
T PRK09473 81 REILNLP------------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM 148 (330)
T ss_pred EECCcCC------------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 8875100 00111122 36889999973 3343 5666665544322222334556778889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Ccc
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 287 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~t 287 (361)
.+.. ..++++|++|||||+||++||||| ||||++||. +.|
T Consensus 149 ~~~~--------------~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~t 214 (330)
T PRK09473 149 PEAR--------------KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTA 214 (330)
T ss_pred CChH--------------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 7511 135789999999999999999999 999999752 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
+|+||| ..+..+||||+ +|++|+|++.|++++++..|.++|++.++..+.
T Consensus 215 il~iTHdl~~~~~~~Dri~-vm~~G~ive~g~~~~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 215 IIMITHDLGVVAGICDKVL-VMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred EEEEECCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 999999 45668999996 599999999999999999999999887766543
No 40
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=303.13 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=158.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~- 68 (235)
T cd03261 1 IELRGLTKSFGGR---TV---LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLS- 68 (235)
T ss_pred CeEEEEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccC-
Confidence 5789999999753 45 666999999999999999999999999999999999 99999999998764100
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..+++++|++.+++. ++.+|+.++.......+.....+++.++++.+++.+
T Consensus 69 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 128 (235)
T cd03261 69 -----------EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG--------- 128 (235)
T ss_pred -----------hhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch---------
Confidence 00011234568899999888776 999999876432111223344567788899999977
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 129 --------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~ 200 (235)
T cd03261 129 --------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA 200 (235)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH
Confidence 45889999999999999999999 999999652 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
..+|||++ +|++|+++..|++++++..
T Consensus 201 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 201 FAIADRIA-VLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHhcCEEE-EEECCeEEEecCHHHHcCC
Confidence 78999996 5999999999998887653
No 41
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=331.44 Aligned_cols=225 Identities=17% Similarity=0.199 Sum_probs=182.6
Q ss_pred cccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++||++.|... .++.+++| |||+|.+||++||||+|||||||++++|.|+++.+. ...+|+|.|+|+++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~---vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRD---VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLLG 79 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeec---ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchhc
Confidence 489999999999644 23467555 999999999999999999999999999999999442 2458999999997652
Q ss_pred ceEeEeeeecCCCcceeeeecC-CCCcccccchHH--HH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINM--IK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l--~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
... -.....| ..++++||+++- -| .+|.+.|......+.....++.++++.++|++++|.+..
T Consensus 80 l~~------------~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~- 146 (539)
T COG1123 80 LSE------------REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE- 146 (539)
T ss_pred CCH------------HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh-
Confidence 110 0011222 458899999753 23 288888887776666555778889999999999998743
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
..++||++||||||||++||+|| ||||.+||. |+++|+||
T Consensus 147 --------------~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~IT 212 (539)
T COG1123 147 --------------RRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFIT 212 (539)
T ss_pred --------------hhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 12569999999999999999999 999999763 99999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhHH
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 340 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~l 340 (361)
| ..++++||||+ ||++|++++.|++++||.+|.|+|++.++.+...+
T Consensus 213 HDl~Vva~~aDrv~-Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~ 261 (539)
T COG1123 213 HDLGVVAELADRVV-VMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRL 261 (539)
T ss_pred CCHHHHHHhcCeEE-EEECCEEEEecCHHHHHhccCCcccHHHHhhCCCc
Confidence 9 57789999995 69999999999999999999999998887765444
No 42
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-39 Score=339.48 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=180.4
Q ss_pred hhhHHHHHHHHhHHHHH-h-----h--hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 63 RRDAVFREVLQSYDQLR-T-----R--IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~-~-----~--~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
....|+.++++.+++.. . . ....++++||++.|.++. ++ |+|+||+|++|+++||+||||||||||+
T Consensus 319 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~--~v---L~~i~l~i~~G~~vaIvG~SGsGKSTL~ 393 (588)
T PRK11174 319 GAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGK--TL---AGPLNFTLPAGQRIALVGPSGAGKTSLL 393 (588)
T ss_pred HHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 34459999986543211 0 0 112489999998665443 45 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ ++|+|.++|.++. .+...+.|+.+++|+|++.+|..|+.+||.++.+
T Consensus 394 ~lL~g~~p------~~G~I~i~g~~i~---------------~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~---- 448 (588)
T PRK11174 394 NALLGFLP------YQGSLKINGIELR---------------ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP---- 448 (588)
T ss_pred HHHhcCCC------CCcEEEECCEecc---------------cCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC----
Confidence 99999984 5899999999886 4566778889999999999999999999997632
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
+..++++.++++.+++++.+...++.+.+.|++. ...||||||||++||||| ||||++||.
T Consensus 449 ---~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~------G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 449 ---DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ------AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred ---CCCHHHHHHHHHHhCHHHHHHhcccccccccccC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 3445778888999999887766777777766553 457999999999999998 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 520 te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii-vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 520 SEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW-VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE-EEeCCeEeecCCHHHHHhc
Confidence 799999999 45567799995 6999999999999998764
No 43
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-39 Score=300.46 Aligned_cols=180 Identities=20% Similarity=0.302 Sum_probs=157.5
Q ss_pred ccccccccceeeecCcc------eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 83 GSLTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~------~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++++++||++.|..+. .+.|++| |||+|++||+++|||+||||||||.|+|.||++ |++|+|+++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~---Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~ 73 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDG---VSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFE 73 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecc---eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEc
Confidence 45799999999996432 2578666 999999999999999999999999999999999 999999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
|+++.. +. ..+..+++.++|+.+|+.++
T Consensus 74 g~~i~~---------------~~-------------------------------------~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 74 GKDITK---------------LS-------------------------------------KEERRERVLELLEKVGLPEE 101 (268)
T ss_pred Ccchhh---------------cc-------------------------------------hhHHHHHHHHHHHHhCCCHH
Confidence 988751 11 14456788999999998764
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
.+.++|++|||||+||++||||| |||+|+||- |.|.++
T Consensus 102 ----------------~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 102 ----------------FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred ----------------HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence 47999999999999999999999 999999753 999999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhhH
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 339 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~~ 339 (361)
||| ..+..+||||+ ||+.|+|++.|+.+++|.+|.|+|++.++.+...
T Consensus 166 IsHDL~vv~~isdri~-VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 166 ISHDLSVVRYISDRIA-VMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred EEEEHHhhhhhcccEE-EEecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 999 56779999997 5999999999999999999999999988887654
No 44
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.3e-39 Score=322.67 Aligned_cols=197 Identities=15% Similarity=0.187 Sum_probs=164.3
Q ss_pred eeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeec
Q 018083 93 LSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 172 (361)
Q Consensus 93 ~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~ 172 (361)
++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 1 ~~~~~~---~~---l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~----------- 58 (363)
T TIGR01186 1 KKTGGK---KG---VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIM----------- 58 (363)
T ss_pred CccCCc---ee---EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECC-----------
Confidence 356543 45 666999999999999999999999999999999999 99999999998875
Q ss_pred CCCcceeeeec----CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEE
Q 018083 173 RGSNSFSLYDT----RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 247 (361)
Q Consensus 173 ~~~~~~~~~d~----r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~v 247 (361)
....... +..++||||++.+|+. ++.+|+.++.... ..++.+..+++.++++.++|..
T Consensus 59 ----~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~------------ 121 (363)
T TIGR01186 59 ----KQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEE------------ 121 (363)
T ss_pred ----cCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCch------------
Confidence 1122222 4678999999999987 9999999876432 2234456678899999999987
Q ss_pred EechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cccccc
Q 018083 248 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 248 v~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~ 299 (361)
+++++|.+||||||||++||||| |||+++||+ ++|||+||| +++.++
T Consensus 122 -----~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~ 196 (363)
T TIGR01186 122 -----YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI 196 (363)
T ss_pred -----hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 46999999999999999999999 999999753 799999999 578899
Q ss_pred cchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
||||+ +|++|++++.|++++++..|.++++..++
T Consensus 197 ~drI~-vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 197 GDRIV-IMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred CCEEE-EEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 99996 59999999999999999888766554443
No 45
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.1e-39 Score=343.76 Aligned_cols=225 Identities=8% Similarity=0.078 Sum_probs=181.9
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCC
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKG 127 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnG 127 (361)
+....|+.++++.+++.... ....|+++|++|+|++.. .++ |+|+||+|++|+.++|+||||
T Consensus 440 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sG 515 (710)
T TIGR03796 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLE-PPL---IENFSLTLQPGQRVALVGGSG 515 (710)
T ss_pred HHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCC-CCc---ccceeEEEcCCCEEEEECCCC
Confidence 34455999998654332110 123589999999997542 245 666999999999999999999
Q ss_pred CCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhcccc
Q 018083 128 SGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 207 (361)
Q Consensus 128 SGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~ 207 (361)
||||||+++|+|+++ |++|+|.+||.++. .+...+.|+.+++|+|++.+|..++.+||.+
T Consensus 516 sGKSTLlklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l 575 (710)
T TIGR03796 516 SGKSTIAKLVAGLYQ-----PWSGEILFDGIPRE---------------EIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575 (710)
T ss_pred CCHHHHHHHHhcCCC-----CCCcEEEECCEeHH---------------HCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence 999999999999999 99999999999886 4566678899999999999999999999986
Q ss_pred ceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCC
Q 018083 208 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 278 (361)
Q Consensus 208 ~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 278 (361)
+.. +...+++.++++.+++.+.+...++.+.+.+.+ ....||||||||++||||| |||
T Consensus 576 ~~~-------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e------~G~~LSGGQrQRiaLARall~~p~iliLDEp 642 (710)
T TIGR03796 576 WDP-------TIPDADLVRACKDAAIHDVITSRPGGYDAELAE------GGANLSGGQRQRLEIARALVRNPSILILDEA 642 (710)
T ss_pred CCC-------CCCHHHHHHHHHHhCCHHHHHhCcCcccceecc------CCCCCCHHHHHHHHHHHHHhhCCCEEEEECc
Confidence 432 234566777888888887665555565555544 3557999999999999999 999
Q ss_pred ceeecC-------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 279 YLSFRD-------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 279 t~~L~~-------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|++||. ++|+|+||| ......||||+ +|++|++++.|++++++..
T Consensus 643 tS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Ii-vl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 643 TSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEII-VLERGKVVQRGTHEELWAV 701 (710)
T ss_pred cccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE-EEeCCEEEEecCHHHHHHc
Confidence 999864 899999999 45567799995 6999999999999998764
No 46
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.6e-39 Score=341.63 Aligned_cols=226 Identities=13% Similarity=0.125 Sum_probs=183.6
Q ss_pred hhhhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 60 DQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
..+....|+.++++.+++.... ....++++||+++|++.. .++ |+|+||+|++||.+||+||||||||||
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTL 495 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDG-PLI---LDDVSLQIEPGEFVAIVGPSGSGKSTL 495 (686)
T ss_pred HHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCC-ccc---eeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 3344455888988755442211 123589999999996432 245 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+|+|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|+.|+.+||.++..
T Consensus 496 lklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--- 552 (686)
T TIGR03797 496 LRLLLGFET-----PESGSVFYDGQDLA---------------GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--- 552 (686)
T ss_pred HHHHhCCCC-----CCCCEEEECCEEcC---------------cCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---
Confidence 999999999 99999999999987 4566678889999999999999999999997532
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
...+++.++++.+++.+.+...++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 553 -----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige------~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 553 -----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISE------GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621 (686)
T ss_pred -----CCHHHHHHHHHHcCcHHHHHhccccccccccC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 23466788899999987665556666665544 3457999999999999999 999999874
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 622 ~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Ii-vl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 622 RTQAIVSESLERLKVTRIVIAHRLSTIRNADRIY-VLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 789999999 45567799995 6999999999999998764
No 47
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.9e-39 Score=347.63 Aligned_cols=226 Identities=12% Similarity=0.117 Sum_probs=197.0
Q ss_pred hhhhhHHHHHHHHhHHHHHhh---------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 61 QRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~---------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
.+.+++++-++++.++.+... ..+-|+++||+|+|+.+..+++++| +||+|++|+++|||||||||||
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~---l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNN---LSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcC---CcEEecCCCEEEEECCCCCCHH
Confidence 344566888888877754332 2335999999999997766778555 9999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
|.+.+|-++|+ |++|.|.+||.+++ ++.+..+|+.++.|.|+|.||..||++||.+|..
T Consensus 1031 TvI~LLeRfYd-----p~~G~V~IDg~dik---------------~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~- 1089 (1228)
T KOG0055|consen 1031 TVISLLERFYD-----PDAGKVKIDGVDIK---------------DLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE- 1089 (1228)
T ss_pred HHHHHHHHhcC-----CCCCeEEECCcccc---------------cCCHHHHHHhcceeccCchhhcccHHHHHhccCC-
Confidence 99999999999 99999999999998 6888999999999999999999999999999822
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+..++++.++++.++.++.+..-+++|++.|+++ ..+||||||||+|||||+ ||.||+|
T Consensus 1090 ------~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGer------G~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1090 ------EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGER------GVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred ------CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcc------cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 2567788899999999888777788898877765 569999999999999998 9999998
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|- |+|.|+|+| -.-.+.||.|+ |+++|+|++.|+|++++.
T Consensus 1158 DseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~-Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIA-VLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEE-EEECCEEEecccHHHHHh
Confidence 62 999999999 56678899996 599999999999999988
No 48
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.1e-39 Score=342.44 Aligned_cols=225 Identities=12% Similarity=0.129 Sum_probs=182.8
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+....|+.++++.+++.... ..+.|+++|++|+|+++. ++ |+|+||+|++|+.+||+||||||||||
T Consensus 442 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~--~i---L~~isl~i~~G~~vaIvG~SGsGKSTL 516 (708)
T TIGR01193 442 RVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGS--NI---LSDISLTIKMNSKTTIVGMSGSGKSTL 516 (708)
T ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCC--cc---eeceeEEECCCCEEEEECCCCCCHHHH
Confidence 34455999998755442211 123589999999997543 45 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|..|+.+||.++..
T Consensus 517 lklL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~--- 573 (708)
T TIGR01193 517 AKLLVGFFQ-----ARSGEILLNGFSLK---------------DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK--- 573 (708)
T ss_pred HHHHhccCC-----CCCcEEEECCEEHH---------------HcCHHHHHHheEEEecCceehhHHHHHHHhccCC---
Confidence 999999999 99999999999886 4566678889999999999999999999997631
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
+....+++.++++.+++.+.+.+.++.+.+.|.+ ....||||||||++||||| ||||++||.
T Consensus 574 ---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e------~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~ 644 (708)
T TIGR01193 574 ---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE------EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644 (708)
T ss_pred ---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecC------CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence 1233466778888888877665556666665544 3567999999999999998 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ......||+|+ +|++|++++.|++++++..
T Consensus 645 ~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~-~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 645 ITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKII-VLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEE-EEECCEEEEECCHHHHHhc
Confidence 789999999 55667899995 6999999999999998764
No 49
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=315.34 Aligned_cols=225 Identities=12% Similarity=0.162 Sum_probs=168.7
Q ss_pred ccccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++|+++||++.|+.. ....+ |++|||+|.+||+++|+|+||||||||+++|+|+++.. ..|++|+|+++|+++.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKA---VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLL 76 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECC
Confidence 3579999999999532 11356 55599999999999999999999999999999998621 1158999999998874
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchH--HHHH-HHHhccccceeEEe--c---CCChhhhhhhcccccccC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNIN--MIKL-WIMEGVRHGELVIR--R---SDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~--~---~~~~~~~~~v~~~l~~~g 232 (361)
... ....... +..++||||++. +.+. ++.+++.+...... . ......++++.++++.++
T Consensus 77 ~~~------------~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g 144 (330)
T PRK15093 77 RLS------------PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVG 144 (330)
T ss_pred cCC------------HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCC
Confidence 100 0011111 236889999875 3333 67777765322110 0 011234567889999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
|.+.. ++++++|++||||||||++||||| ||||++||. |.
T Consensus 145 L~~~~--------------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 210 (330)
T PRK15093 145 IKDHK--------------DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT 210 (330)
T ss_pred CCChH--------------HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 97511 145899999999999999999999 999999752 78
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
|||+||| ..+..+||||+ +|++|+|++.|++++++..|.+++++.++....
T Consensus 211 tii~itHdl~~v~~~~dri~-vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~ 263 (330)
T PRK15093 211 TILLISHDLQMLSQWADKIN-VLYCGQTVETAPSKELVTTPHHPYTQALIRAIP 263 (330)
T ss_pred EEEEEECCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 9999999 56778999996 599999999999999999988888766665443
No 50
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-38 Score=332.78 Aligned_cols=224 Identities=12% Similarity=0.119 Sum_probs=183.1
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
+.+..|+.++++.+++.... ..+.|+++|++++|+++. .++ |+|+||+|++|++++|+||||||||||+
T Consensus 308 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~i~~~i~~G~~~aivG~sGsGKSTL~ 383 (574)
T PRK11160 308 IASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQP-QPV---LKGLSLQIKAGEKVALLGRTGCGKSTLL 383 (574)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCC-Ccc---eecceEEECCCCEEEEECCCCCCHHHHH
Confidence 34455999998765442211 123599999999997542 145 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ |++|+|.++|.++. .+...+.|..+++|+|++.+|..++.+|+.++..
T Consensus 384 ~ll~g~~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~---- 439 (574)
T PRK11160 384 QLLTRAWD-----PQQGEILLNGQPIA---------------DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP---- 439 (574)
T ss_pred HHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhheeEEcccchhhcccHHHHhhcCCC----
Confidence 99999999 99999999999886 4556677888999999999999999999987543
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
+...+++.++++.+++.+.+.. ++++.+.|++ ....||||||||++||||| ||||++||.
T Consensus 440 ---~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge------~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 440 ---NASDEALIEVLQQVGLEKLLED-DKGLNAWLGE------GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred ---ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2345678888999999887666 7777665544 4568999999999999999 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ......||+|+ +|++|++++.|++++++..
T Consensus 510 t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 510 TERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC-VMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEE-EEeCCeEEEeCCHHHHHhc
Confidence 899999999 44556799995 6999999999999988764
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=298.09 Aligned_cols=199 Identities=15% Similarity=0.239 Sum_probs=160.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 68 (239)
T cd03296 2 SIEVRNVSKRFGDF---VA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATD-- 68 (239)
T ss_pred EEEEEeEEEEECCE---Ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 48899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .+..++|++|++.+++. ++.+|+.++...... .......+++.++++.+++.+
T Consensus 69 -------------~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 128 (239)
T cd03296 69 -------------VPV--QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW----- 128 (239)
T ss_pred -------------CCc--cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----
Confidence 111 13457889999887765 899999876432111 012233456778899999976
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 129 ------------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 129 ------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred ------------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+.+..+||+++ +|++|+++..|++++++..+.++.
T Consensus 197 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 232 (239)
T cd03296 197 QEEALEVADRVV-VMNKGRIEQVGTPDEVYDHPASPF 232 (239)
T ss_pred HHHHHHhCCEEE-EEECCeEEEecCHHHHhcCCCcHH
Confidence 46778999996 599999999999988876554433
No 52
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-39 Score=316.48 Aligned_cols=206 Identities=15% Similarity=0.191 Sum_probs=165.5
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
||+++|++++|+.+. ..++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~i---l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcC
Confidence 588999999997211 1256 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++. ++.+|+.++.... ..+....++++.++++.+++.+
T Consensus 73 --------~----~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 132 (343)
T PRK11153 73 --------S----EKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSD------- 132 (343)
T ss_pred --------C----HHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 00111234568899999888775 8999998764321 2233445567888999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 133 ----------~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 133 ----------KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+..+||+++ +|++|++++.|++++++..+....
T Consensus 203 ~i~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~ 236 (343)
T PRK11153 203 VVKRICDRVA-VIDAGRLVEQGTVSEVFSHPKHPL 236 (343)
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHH
Confidence 6778999996 599999999999999987765433
No 53
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.9e-39 Score=341.55 Aligned_cols=227 Identities=12% Similarity=0.116 Sum_probs=180.9
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
+....|+.++++.+++.+.. ..+.|+++||+++|++....++ |+|+||+|++||+++|+||||||||||+
T Consensus 448 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTLl 524 (711)
T TIGR00958 448 VGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV---LKGLTFTLHPGEVVALVGPSGSGKSTVA 524 (711)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc---ccCceEEEcCCCEEEEECCCCCCHHHHH
Confidence 33455888888655432211 2235999999999975321246 5669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|.|+++ |++|+|.+||+++. .+...+.+..+++|+|++.+|..++.+||.++..
T Consensus 525 ~lL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~---- 580 (711)
T TIGR00958 525 ALLQNLYQ-----PTGGQVLLDGVPLV---------------QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT---- 580 (711)
T ss_pred HHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHhhceEEecCccccccCHHHHHhcCCC----
Confidence 99999999 99999999999886 4556677888999999999999999999997643
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
...++++.++++.+++.+.+.+.++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 581 ---~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige------~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 581 ---DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE------KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred ---CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccC------CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 223466777888888877554444555554433 3557999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| ......||+|+ +|++|++++.|+++++++..
T Consensus 652 te~~i~~~~~~~~~TvIiItHrl~~i~~aD~Ii-vL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 652 CEQLLQESRSRASRTVLLIAHRLSTVERADQIL-VLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHHHHhhccCCCeEEEEeccHHHHHhCCEEE-EEECCEEEEeeCHHHHHhCC
Confidence 799999999 45557799995 69999999999999987653
No 54
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.4e-38 Score=338.96 Aligned_cols=225 Identities=16% Similarity=0.168 Sum_probs=183.3
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+....|+.++++.+++.... ..+.|+++|++|+|++.. .++ |+|+||+|++|+.++|+||||||||||
T Consensus 432 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~~v---L~~i~l~i~~G~~iaIvG~sGsGKSTL 507 (694)
T TIGR03375 432 KTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQE-TPA---LDNVSLTIRPGEKVAIIGRIGSGKSTL 507 (694)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCC-ccc---eeeeeEEECCCCEEEEECCCCCCHHHH
Confidence 34455899998765442111 123589999999997532 145 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|..|+.+|+.++..
T Consensus 508 lklL~gl~~-----p~~G~I~idg~~l~---------------~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--- 564 (694)
T TIGR03375 508 LKLLLGLYQ-----PTEGSVLLDGVDIR---------------QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--- 564 (694)
T ss_pred HHHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC---
Confidence 999999999 99999999999886 4566778889999999999999999999997533
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
....+++.++++.+++.+.+...++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 565 ----~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e------~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 565 ----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGE------RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred ----CCCHHHHHHHHHHcChHHHHHhCcccccceecC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 234567788888898887665566666665554 3457999999999999999 999999764
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 635 ~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ii-vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 635 RSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRII-VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EEeCCEEEeeCCHHHHHHH
Confidence 799999999 45667899995 6999999999999988653
No 55
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=315.61 Aligned_cols=233 Identities=14% Similarity=0.159 Sum_probs=201.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCC
Q 018083 54 SWDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 128 (361)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGS 128 (361)
+|-.+...|.++.|++++|...|.-... .+..|.++++++.=++ ...++ |+++||++.+||.++|||||||
T Consensus 298 ~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg-~~~pi---l~~isF~l~~G~~lgIIGPSgS 373 (580)
T COG4618 298 NWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG-QKKPI---LKGISFALQAGEALGIIGPSGS 373 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCC-CCCcc---eecceeEecCCceEEEECCCCc
Confidence 8999999999999999999887764332 4457999999985443 33466 5559999999999999999999
Q ss_pred CcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccc
Q 018083 129 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 208 (361)
Q Consensus 129 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~ 208 (361)
|||||.|+|.|..+ |++|.|.+||.+++ .+....+-+++||.||+..+|+.||.+||+
T Consensus 374 GKSTLaR~lvG~w~-----p~~G~VRLDga~l~---------------qWd~e~lG~hiGYLPQdVeLF~GTIaeNIa-- 431 (580)
T COG4618 374 GKSTLARLLVGIWP-----PTSGSVRLDGADLR---------------QWDREQLGRHIGYLPQDVELFDGTIAENIA-- 431 (580)
T ss_pred cHHHHHHHHHcccc-----cCCCcEEecchhhh---------------cCCHHHhccccCcCcccceecCCcHHHHHH--
Confidence 99999999999999 99999999999987 456666778899999999999999999998
Q ss_pred eeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCc
Q 018083 209 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 279 (361)
Q Consensus 209 ~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 279 (361)
...++...+++.++++..+.++-+.+.+++|.+.+.+. ...||||||||+++|||| |||-
T Consensus 432 -----Rf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~------G~~LSgGQRQRIaLARAlYG~P~lvVLDEPN 500 (580)
T COG4618 432 -----RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG------GATLSGGQRQRIALARALYGDPFLVVLDEPN 500 (580)
T ss_pred -----hccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCC------CCCCCchHHHHHHHHHHHcCCCcEEEecCCC
Confidence 34445667788899999999998888888998877774 458999999999999999 9999
Q ss_pred eeecC----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 280 LSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 280 ~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++||. |.|+|+||| ..+...+|+|+ +|++|++-..|+.++++.+
T Consensus 501 sNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil-vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 501 SNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL-VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee-eecCChHHhcCCHHHHHHH
Confidence 99864 999999999 78888899996 5999999999999998764
No 56
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-38 Score=299.26 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=162.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (250)
T PRK11264 2 SAIEVKNLVKKFHGQ---TV---LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTA 70 (250)
T ss_pred CcEEEeceEEEECCe---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcccc
Confidence 479999999999753 45 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...... .......+..+++++|++.+++. ++.+|+.++.............+++.++++.+++.+
T Consensus 71 ~~~~~~-------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------- 136 (250)
T PRK11264 71 RSLSQQ-------KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG------- 136 (250)
T ss_pred ccccch-------hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-------
Confidence 000000 00012234567889999877764 889998764321111222334566778899999986
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 137 ----------~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 137 ----------KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred ----------hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 34889999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+..+||+++ +|++|++++.|++++++..+.+.+
T Consensus 207 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 239 (250)
T PRK11264 207 ARDVADRAI-FMDQGRIVEQGPAKALFADPQQPR 239 (250)
T ss_pred HHHhcCEEE-EEECCEEEEeCCHHHHhcCCCCHH
Confidence 778999996 599999999999998877665443
No 57
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=310.33 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=182.8
Q ss_pred hccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 82 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
..++++.+++.+.|+-+ ..+.|+++ |||++++|++++|||+||||||||-.+|.++++ +. |+|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~---isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I 343 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDG---ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEI 343 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEecc---ceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceE
Confidence 55689999999999532 12567666 999999999999999999999999999999997 55 999
Q ss_pred eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEe-cCCChhhhhhhccccc
Q 018083 154 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 229 (361)
Q Consensus 154 ~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~-~~~~~~~~~~v~~~l~ 229 (361)
.|+|+++.+.. .-...+.|+.+..|||||+ +-|. +|.+-|..|+..+. ..+..+..+++.++|+
T Consensus 344 ~F~G~~i~~~~------------~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~ 411 (534)
T COG4172 344 RFDGQDIDGLS------------RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALE 411 (534)
T ss_pred EECCccccccC------------hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHH
Confidence 99999987311 1234456778888999986 3344 78787888887665 4566788899999999
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+||++.. .++||+++|||||||+|||||| |||||+||.
T Consensus 412 EVGLDp~~----------------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 412 EVGLDPAT----------------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred HcCCChhH----------------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 99999853 5999999999999999999998 999999753
Q ss_pred -CccEEEEEcC--ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 285 -DKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 285 -g~tvIiiTH~--~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
+.+-|+|||+ .+..+||+++ ||++|+|++.|+++++|++|.++|++.++.+
T Consensus 476 ~~LsYLFISHDL~VvrAl~~~vi-Vm~~GkiVE~G~~~~if~~P~~~YT~~L~~a 529 (534)
T COG4172 476 HGLSYLFISHDLAVVRALCHRVI-VMRDGKIVEQGPTEAVFANPQHEYTRALLAA 529 (534)
T ss_pred hCCeEEEEeccHHHHHHhhceEE-EEeCCEEeeeCCHHHHhcCCCcHHHHHHHHh
Confidence 8999999994 5679999995 6999999999999999999999999877654
No 58
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.5e-38 Score=298.58 Aligned_cols=207 Identities=21% Similarity=0.270 Sum_probs=162.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeecccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 159 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~~ 159 (361)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGEK---EA---LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECCe---ee---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 47899999999753 45 666999999999999999999999999999999999 87 9999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
+... .......+..++|++|++.+++.++.+|+.++..........+..+++.++++.+++.+.+
T Consensus 70 ~~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 134 (247)
T TIGR00972 70 IYDK-------------KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-- 134 (247)
T ss_pred cccc-------------ccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--
Confidence 6410 0111223456888999887766788899887543211112234456778889999997210
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-- 293 (361)
...+++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 135 -----------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 135 -----------KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred -----------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 0045889999999999999999999 999999763 689999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+.+..+||+++ +|++|+++..|++++++..+.+..
T Consensus 204 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 238 (247)
T TIGR00972 204 QQAARISDRTA-FFYDGELVEYGPTEQIFTNPKEKR 238 (247)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChH
Confidence 46778999996 599999999999998887665543
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=305.41 Aligned_cols=201 Identities=15% Similarity=0.199 Sum_probs=162.1
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.|+++||++.|++.. ..++ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA---LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 388999999997421 0246 666999999999999999999999999999999999 999999999987751
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCC--ccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~--~~~~ 238 (361)
. .......+..++|+||++. ++..++.+|+.++.... ..++.+..+++.++++.++|. +
T Consensus 74 ~-------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~--- 136 (287)
T PRK13637 74 K-------------KVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYED--- 136 (287)
T ss_pred c-------------CccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchh---
Confidence 0 0111234567899999873 45568999998764321 233445567788999999997 4
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 137 --------------~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 137 --------------YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred --------------hccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35889999999999999999999 999999753 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
| +++..+|||++ +|++|++++.|++++++..+
T Consensus 203 Hd~~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 236 (287)
T PRK13637 203 HSMEDVAKLADRII-VMNKGKCELQGTPREVFKEV 236 (287)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEECCHHHHHhCH
Confidence 9 46778999996 59999999999999887643
No 60
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=302.76 Aligned_cols=193 Identities=15% Similarity=0.192 Sum_probs=157.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|+++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~--~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~-- 70 (274)
T PRK13647 3 NIIEVEDLHFRYKDGT--KA---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVN-- 70 (274)
T ss_pred ceEEEEEEEEEeCCCC--ee---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECC--
Confidence 3789999999996432 45 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. ++..++.+|+.++.... ..+....++++.++++.+++.+
T Consensus 71 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------ 130 (274)
T PRK13647 71 -------------AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWD------ 130 (274)
T ss_pred -------------CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH------
Confidence 1112233456899999873 44458999998764321 2233345567888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 131 -----------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 131 -----------FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccc
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
.+.++|||++ +|++|++++.|++++
T Consensus 200 ~~~~~~d~i~-~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 200 LAAEWADQVI-VLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHH
Confidence 6678999996 599999999998854
No 61
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2e-38 Score=331.06 Aligned_cols=226 Identities=12% Similarity=0.150 Sum_probs=179.1
Q ss_pred hhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+....|+.++++.+++.... ..+.++++|++++|+++. .++ |+++||+|++|+.++|+||||||||||++
T Consensus 312 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~-~~i---l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 312 MAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKE-VPA---LRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCC-Ccc---ccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 33445888887644331111 123599999999997542 245 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|.++. .+...+.+..++|++|++.+|+.|+.+||.++..
T Consensus 388 ll~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~----- 442 (582)
T PRK11176 388 LLTRFYD-----IDEGEILLDGHDLR---------------DYTLASLRNQVALVSQNVHLFNDTIANNIAYART----- 442 (582)
T ss_pred HHHhccC-----CCCceEEECCEEhh---------------hcCHHHHHhhceEEccCceeecchHHHHHhcCCC-----
Confidence 9999999 99999999999876 4555667788999999999999999999997532
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
.....+++.++++.+++.+.+...++.+.+.+++ ....||||||||++||||| ||||++||+
T Consensus 443 -~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~------~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 443 -EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE------NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred -CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCC------CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1234567777888888876554444555554443 3457999999999999999 999999864
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 516 ~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii-~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL-VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEeCCHHHHHhC
Confidence 799999999 56667899995 6999999999999998765
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.2e-38 Score=293.75 Aligned_cols=196 Identities=17% Similarity=0.219 Sum_probs=157.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (236)
T cd03219 1 LEVRGLTKRFGGL---VA---LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITG--- 66 (236)
T ss_pred CeeeeeEEEECCE---EE---ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCC---
Confidence 5689999999752 45 566999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecC---------CChhhhhhhcccccccCCC
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRS---------DSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~---------~~~~~~~~v~~~l~~~gl~ 234 (361)
..... .+..++|++|++.+++. ++.+|+.++....... ......+++.++++.+++.
T Consensus 67 ------------~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (236)
T cd03219 67 ------------LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA 134 (236)
T ss_pred ------------CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc
Confidence 11111 12457888999888776 8999998764321110 1233455678889999997
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
+ .+++++.+||||||||++||||| ||||++||. ++|||
T Consensus 135 ~-----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 197 (236)
T cd03219 135 D-----------------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVL 197 (236)
T ss_pred c-----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 7 45889999999999999999999 999999753 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|| +++..+||+++ +|++|+++..|++++++..+
T Consensus 198 ~vsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 198 LVEHDMDVVMSLADRVT-VLDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred EEecCHHHHHHhCCEEE-EEeCCEEEeecCHHHhccCC
Confidence 9999 56778899996 59999999999988876543
No 63
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-38 Score=294.54 Aligned_cols=198 Identities=13% Similarity=0.149 Sum_probs=161.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~-- 68 (241)
T PRK14250 2 NEIEFKEVSYSSFGK---EI---LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIK-- 68 (241)
T ss_pred ceEEEEeEEEEeCCe---ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhh--
Confidence 468999999999653 45 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.....+.+..+++++|++.+++.++.+|+.++.... ....+++.++++.+++...
T Consensus 69 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~l~~~~l~~~------- 123 (241)
T PRK14250 69 -------------TIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLK-----GEKNVDVEYYLSIVGLNKE------- 123 (241)
T ss_pred -------------hcChHHhhhcEEEEecCchhchhhHHHHHhcchhhc-----CcHHHHHHHHHHHcCCCHH-------
Confidence 111223345678899998888779999988654311 1123467778899999631
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+.++.+.+||||||||++||||| |||+++||. |.|||++|| ++
T Consensus 124 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 124 ---------YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 35889999999999999999999 999999642 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+..+||+++ +|++|+++..+++++++..+.+++
T Consensus 195 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 227 (241)
T PRK14250 195 AKRIGDYTA-FLNKGILVEYAKTYDFFTNPQNEV 227 (241)
T ss_pred HHHhCCEEE-EEeCCEEEEeCCHHHHhcCCCcHH
Confidence 778999996 599999999999999887665443
No 64
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.6e-38 Score=308.47 Aligned_cols=196 Identities=13% Similarity=0.075 Sum_probs=162.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++||+++|++. .+ |++|||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 5 ~~~i~i~~l~k~~~~~---~~---l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 5 VAPIDFRNVEKRYGDK---LV---VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPS 73 (306)
T ss_pred CceEEEEeEEEEECCe---EE---EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEeccc
Confidence 3579999999999752 56 555999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ....+..++|++|++.+++. ++.+|+.+.... ...+..+.++++.++++.+++.+
T Consensus 74 ---------------~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~------ 130 (306)
T PRK13537 74 ---------------R-ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY-FGLSAAAARALVPPLLEFAKLEN------ 130 (306)
T ss_pred ---------------c-hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCch------
Confidence 0 11245678999999888765 899998753321 12233445567788899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 131 -----------~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 131 -----------KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 45889999999999999999999 999999753 899999999 6
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++..+||||+ +|++|+++..|+++++...
T Consensus 200 e~~~~~d~i~-il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 200 EAERLCDRLC-VIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 7889999996 5999999999999888654
No 65
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=308.79 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=165.4
Q ss_pred hccccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 82 IGSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
..++|+++|+++.|+... ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.+
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~ 89 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVA---LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIY 89 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEE
Confidence 446899999999997431 1246 666999999999999999999999999999999999 999999999987
Q ss_pred cCcceEeEeeeecCCC--cc-eeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCC
Q 018083 160 GDGTYFLQEYTIPRGS--NS-FSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~--~~-~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~ 234 (361)
+....... ...... .. ......+..+++|+|++ .++..++.+|+.++.... ..+..+..+++.++++.+++.
T Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 90 IGDKKNNH--ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred cccccccc--cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCC
Confidence 64100000 000000 00 01223456789999987 466669999998875321 223344556788899999996
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
.. ++++.+.+||||||||++||||| ||||++||. |+|||
T Consensus 167 ~~----------------~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tii 230 (320)
T PRK13631 167 DS----------------YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF 230 (320)
T ss_pred hh----------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 31 35889999999999999999999 999999753 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|| +.+..+|||++ +|++|++++.|++++++..+
T Consensus 231 ivtHd~~~~~~~adri~-vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 231 VITHTMEHVLEVADEVI-VMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EEecCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 9999 45778999996 59999999999999888764
No 66
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-38 Score=331.43 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=179.6
Q ss_pred hhhhHHHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
+..+.|+.++++.+++.... ..+.++++|++++|+++. ++ |+|+||+|++||.++|+|+||||||||+++
T Consensus 312 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~--~i---l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~l 386 (592)
T PRK10790 312 VVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDN--LV---LQNINLSVPSRGFVALVGHTGSGKSTLASL 386 (592)
T ss_pred HHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCC--ce---eeceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 34455888888644321111 123599999999997543 35 666999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.+||.++. .+.....+..+++|+|++.+|+.|+.+||.++.
T Consensus 387 L~gl~~-----p~~G~I~idg~~i~---------------~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~------- 439 (592)
T PRK10790 387 LMGYYP-----LTEGEIRLDGRPLS---------------SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR------- 439 (592)
T ss_pred HhcccC-----CCCceEEECCEEhh---------------hCCHHHHHhheEEEccCCccccchHHHHHHhCC-------
Confidence 999999 99999999999886 456667788999999999999999999999752
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
...++++.++++.+|+.+.+.+.++.+.+.+++ ....||||||||++||||| ||||++||.
T Consensus 440 -~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e------~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 440 -DISEEQVWQALETVQLAELARSLPDGLYTPLGE------QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred -CCCHHHHHHHHHHcCcHHHHHhccccccccccC------CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 123456788889999887554445555554433 4557999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 513 ~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii-~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 513 QAIQQALAAVREHTTLVVIAHRLSTIVEADTIL-VLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEEcCHHHHHhC
Confidence 799999999 55667799995 6999999999999998764
No 67
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-38 Score=319.04 Aligned_cols=193 Identities=14% Similarity=0.225 Sum_probs=156.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeee-cCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD-TRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d-~r~ 185 (361)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++... . ...+.. .+.
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-----p~sG~I~i~G~~i~~~--------~----~~~l~~~~~~ 106 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-----PTRGQVLIDGVDIAKI--------S----DAELREVRRK 106 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCEEEECCEECCcC--------C----HHHHHHHHhC
Confidence 666999999999999999999999999999999999 9999999999887410 0 001111 134
Q ss_pred CCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 186 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 186 ~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
.++|++|++.+++. ++.+|+.++.... ..+..+.++++.++++.++|.+ ++++++.+||||
T Consensus 107 ~igyv~Q~~~l~~~~Tv~enl~~~~~~~-~~~~~~~~~~~~e~L~~~gL~~-----------------~~~~~~~~LSgG 168 (400)
T PRK10070 107 KIAMVFQSFALMPHMTVLDNTAFGMELA-GINAEERREKALDALRQVGLEN-----------------YAHSYPDELSGG 168 (400)
T ss_pred CEEEEECCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCh-----------------hhhcCcccCCHH
Confidence 68899999888876 9999998865422 2233445567888999999987 458999999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g 316 (361)
||||++||||| ||||++||. ++|||++|| +++..+||+++ +|++|++++.|
T Consensus 169 q~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~-vL~~G~i~~~g 247 (400)
T PRK10070 169 MRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA-IMQNGEVVQVG 247 (400)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE-EEECCEEEecC
Confidence 99999999999 999999753 789999999 57788999996 59999999999
Q ss_pred CccccccCCCCCCCCchhh
Q 018083 317 PAKQIFDIPESSDPENELI 335 (361)
Q Consensus 317 ~~~~i~~~~~~~~~~~~~~ 335 (361)
++++++..|.+.+++.++.
T Consensus 248 ~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 248 TPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CHHHHHhCcccHHHHHHHh
Confidence 9999988776655544443
No 68
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=285.62 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=171.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++.|.++||.|+|+.+ +++++ |||+|++||+++|+|||||||||.+.++.|+.+ |++|+|.++|.+++.
T Consensus 2 ~~~L~a~~l~K~y~kr---~Vv~~---Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT~ 70 (243)
T COG1137 2 MSTLVAENLAKSYKKR---KVVND---VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDITK 70 (243)
T ss_pred CcEEEehhhhHhhCCe---eeeee---eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCccccc
Confidence 4578999999999874 56455 999999999999999999999999999999999 999999999999972
Q ss_pred ceEeEeeeecCCCcceeee-ecCCCCcccccchHHHHH-HHHhccccceeEEecC-CChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
...+ ..|.-++|.+|++..|.. +|.+||..-+...... ...+.+.++.++|+.+.+.+
T Consensus 71 ---------------lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h---- 131 (243)
T COG1137 71 ---------------LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH---- 131 (243)
T ss_pred ---------------CChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH----
Confidence 2222 234468999999999988 9999999877654321 11234445779999999998
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
+.+++..+||||||+|+.||||| |||++|.|+ |..|++.-|
T Consensus 132 -------------lr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN 198 (243)
T COG1137 132 -------------LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN 198 (243)
T ss_pred -------------HhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcccc
Confidence 66999999999999999999999 999999765 889999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+...+|||.++ +++|++++.|+++++.++|..
T Consensus 199 VREtL~i~dRaYI-i~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 199 VRETLDICDRAYI-ISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred HHHHHhhhheEEE-EecCeEEecCCHHHHhcChhh
Confidence 688899999975 999999999999999988754
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-38 Score=296.34 Aligned_cols=203 Identities=18% Similarity=0.219 Sum_probs=161.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~---~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~- 68 (240)
T PRK09493 1 MIEFKNVSKHFGPT---QV---LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDP- 68 (240)
T ss_pred CEEEEeEEEEECCe---EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcC-
Confidence 47899999999753 45 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++.............+++.++++.+++.+
T Consensus 69 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------- 128 (240)
T PRK09493 69 ------------KVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-------- 128 (240)
T ss_pred ------------ChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH--------
Confidence 01111234467888998877765 888998765321112223344567788999999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 129 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 129 ---------RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred ---------HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+||+++ +|++|+++..|+++++...+.+..
T Consensus 200 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 231 (240)
T PRK09493 200 EKVASRLI-FIDKGRIAEDGDPQVLIKNPPSQR 231 (240)
T ss_pred HHhCCEEE-EEECCEEEeeCCHHHHhcCCchHH
Confidence 78899996 599999999999988876655443
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5e-38 Score=291.05 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=152.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh-----cccccccccceeeeccccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~-----~~~~~~p~~G~I~i~G~~i 160 (361)
|+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~~ 69 (227)
T cd03260 1 IELRDLNVYYGDK---HA---LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKDI 69 (227)
T ss_pred CEEEEEEEEcCCc---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEEh
Confidence 5789999999753 45 66699999999999999999999999999999999 8 9999999999876
Q ss_pred CcceEeEeeeecCCCccee--eeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 161 DGTYFLQEYTIPRGSNSFS--LYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~--~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. .. ....+..++|++|++.++..++.+|+.++............++++.++++.+++.+
T Consensus 70 ~~---------------~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 131 (227)
T cd03260 70 YD---------------LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--- 131 (227)
T ss_pred hh---------------cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh---
Confidence 41 11 12234567889999888755999999876432111111224567788899999986
Q ss_pred EEEEEEEEEEechhhhhhc--cCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~--~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiT 292 (361)
.+++. +.+||||||||++||||| ||||++||. .+|||++|
T Consensus 132 --------------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 197 (227)
T cd03260 132 --------------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVT 197 (227)
T ss_pred --------------HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEe
Confidence 23555 599999999999999999 999999753 47999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
| +.+..+||+++ +|++|++++.|+++++
T Consensus 198 H~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 198 HNMQQAARVADRTA-FLLNGRLVEFGPTEQI 227 (227)
T ss_pred ccHHHHHHhCCEEE-EEeCCEEEEecCcccC
Confidence 9 46778999996 5999999999887654
No 71
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-38 Score=303.95 Aligned_cols=203 Identities=17% Similarity=0.189 Sum_probs=162.9
Q ss_pred ccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
||+++|++++|+.+.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA---LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 5889999999974321 135 666999999999999999999999999999999999 999999999988641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.. ........+..+++|+|++ .++..++.+|+.++.... ..+..+.++++.++++.++|.+.
T Consensus 73 ~~-----------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~---- 136 (288)
T PRK13643 73 TS-----------KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADE---- 136 (288)
T ss_pred cc-----------ccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 00 0012233456789999987 456669999998875422 22334556678888999999632
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++.+.+||||||||++||||| ||||++||. |.|||++||
T Consensus 137 ------------~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~ 204 (288)
T PRK13643 137 ------------FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204 (288)
T ss_pred ------------hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 35889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++..+||||+ +|++|+++..|++++++..
T Consensus 205 ~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 205 DDVADYADYVY-LLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHhCCEEE-EEECCEEEEECCHHHHHcC
Confidence 56778999996 5999999999999998764
No 72
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4e-38 Score=289.57 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=149.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+++. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~- 70 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH-QPA---LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRL- 70 (216)
T ss_pred CeEEEEEEEEecCCC-eeE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhc-
Confidence 478999999996432 135 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
. .......+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 71 -------~----~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 130 (216)
T TIGR00960 71 -------R----GREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEG-------- 130 (216)
T ss_pred -------C----hhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 0 00111234568899999888775 8999998764321 1222344567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 131 ---------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~ 201 (216)
T TIGR00960 131 ---------KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLV 201 (216)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 466
Q ss_pred ccccchhhHhhhhhhh
Q 018083 297 LSLTDRARIRTYLGEL 312 (361)
Q Consensus 297 ~~~aDri~vvl~~G~i 312 (361)
..+||+++ +|++|++
T Consensus 202 ~~~~d~i~-~l~~G~i 216 (216)
T TIGR00960 202 ETYRHRTL-TLSRGRL 216 (216)
T ss_pred HHhCCEEE-EEeCCcC
Confidence 78999996 5999875
No 73
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=297.59 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=166.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|+++.
T Consensus 4 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 4 NEAIIETENLNLFYTDF---KA---LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CCceEEEeeeEEEeCCc---ee---ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 34589999999999753 45 6669999999999999999999999999999999981100025899999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.++..++.+|+.++............++++.++++.+++.+.+
T Consensus 78 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---- 140 (254)
T PRK14273 78 SN-------------NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---- 140 (254)
T ss_pred cc-------------cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh----
Confidence 10 0111233556889999987776689999987643211112233456677788888874211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 141 ---------~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~ 211 (254)
T PRK14273 141 ---------KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ 211 (254)
T ss_pred ---------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135888999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+..+|||++ +|++|+++..|++++++..|.+++++.+
T Consensus 212 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 248 (254)
T PRK14273 212 AGRISDRTA-FFLNGCIEEESSTDELFFNPKNTKTEEY 248 (254)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHHh
Confidence 678999996 5999999999999999888877665443
No 74
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-38 Score=318.22 Aligned_cols=223 Identities=15% Similarity=0.102 Sum_probs=181.5
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccc--cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTD--AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~le--i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
-+++.++..+++++.+.... ..+-++ ++|+++.|++++ ++ ++++||++++|+.++|||+|||||||
T Consensus 288 ~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~--~~---l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 288 EAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PA---LSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred hhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC--cc---cCCceeEecCCcEEEEECCCCCCHHH
Confidence 33444777777766542211 222344 559999998774 56 55599999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|+|+++ |++|+|.+||.++. +....++++.+.+|+|++.+|+.|+++||.++..
T Consensus 363 Ll~lL~G~~~-----~~~G~I~vng~~l~---------------~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-- 420 (559)
T COG4988 363 LLNLLLGFLA-----PTQGEIRVNGIDLR---------------DLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-- 420 (559)
T ss_pred HHHHHhCcCC-----CCCceEEECCcccc---------------ccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--
Confidence 9999999999 99999999999886 4566678899999999999999999999997544
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
+..++++.++++.+++.+.+.. +.++.+++ .+....|||||+||+++|||| ||||++||
T Consensus 421 -----~~s~e~i~~al~~a~l~~~v~~-p~GLdt~i------ge~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 421 -----DASDEEIIAALDQAGLLEFVPK-PDGLDTVI------GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred -----cCCHHHHHHHHHHhcHHHhhcC-CCcccchh------ccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 4556788889999999886543 45555533 345667999999999999999 99999976
Q ss_pred C---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 284 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 284 ~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
. ++|+|+||| ...+.-||+|+ +|++|++++.|.++++...
T Consensus 489 ~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~-vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 489 AETEQIILQALQELAKQKTVLVITHRLEDAADADRIV-VLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEE-EecCCceeccCCHHHHhhc
Confidence 2 899999999 56667799995 6999999999999998764
No 75
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-38 Score=315.48 Aligned_cols=199 Identities=15% Similarity=0.185 Sum_probs=176.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++|++++|+++. ++ |+++||+|++||.+||+|+|||||||++|+|.++++ .+|+|.+||++++
T Consensus 351 ~I~F~dV~f~y~~k~--~i---L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik--- 416 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR--KV---LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIK--- 416 (591)
T ss_pred cEEEEeeEEEeCCCC--ce---ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHh---
Confidence 599999999999874 46 455999999999999999999999999999999998 6899999999997
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+....+|+.+++|||+.-+|..||..||.+|-+ +...+++.++++.+++++-+.+.++.|
T Consensus 417 ------------~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~-------sas~eeV~e~~k~a~~hd~i~~l~~GY 477 (591)
T KOG0057|consen 417 ------------EVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP-------SASDEEVVEACKRAGLHDVISRLPDGY 477 (591)
T ss_pred ------------hhChHHhhhheeEeCCcccccchhHHHHhhcCCC-------CcCHHHHHHHHHHcCcHHHHHhccccc
Confidence 5677788999999999999999999999998765 455678889999999999877777777
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~ 299 (361)
-+.|.+ +...||||||||++||||+ |||||+||. ++|+|+|-| .+...-
T Consensus 478 ~T~VGe------rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 478 QTLVGE------RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred hhhHhh------cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc
Confidence 775544 4557999999999999998 999999863 899999999 577788
Q ss_pred cchhhHhhhhhhhcCCCCcccccc
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
||+|+ ++++|++.+.|++++++.
T Consensus 552 ~DkI~-~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 552 FDKII-VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CCEEE-EEECCeeEEeccHHHHhh
Confidence 99995 699999999999999988
No 76
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-38 Score=306.15 Aligned_cols=215 Identities=13% Similarity=0.175 Sum_probs=164.6
Q ss_pred ccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++|++++|+++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.+...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA---LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccc---eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccc
Confidence 4889999999975321 135 666999999999999999999999999999999999 999999999876521
Q ss_pred ceE-------eEeeeecCCC--cceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 163 TYF-------LQEYTIPRGS--NSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 163 ~~~-------~~~~~i~~~~--~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
... .....+.... ........+..++||||++ .++..++.+|+.++.... ..+.++..+++.++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHc
Confidence 000 0000000000 0011223456789999986 455569999999875422 233455667888999999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
+|... ++++++.+||||||||++||||| ||||++||. |+
T Consensus 153 gL~~~----------------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 216 (305)
T PRK13651 153 GLDES----------------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216 (305)
T ss_pred CCChh----------------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 99631 45899999999999999999999 999999753 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
|||+||| +.+..+|||++ +|++|++++.|++++++..+
T Consensus 217 tiiivtHd~~~~~~~adrv~-vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 217 TIILVTHDLDNVLEWTKRTI-FFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred EEEEEeeCHHHHHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 9999999 46789999996 59999999999999988764
No 77
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-38 Score=292.78 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=158.6
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA---LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccC
Confidence 478999999997531 0145 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 73 --------~----~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (233)
T cd03258 73 --------S----GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLED------- 132 (233)
T ss_pred --------C----HHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 0 00111224567889999888775 8899987654311 1222334567788899999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.+++.+.+||||||||++||||| |||+++||. |+|||++|| +
T Consensus 133 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 133 ----------KADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred ----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999653 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+..+||+++ +|++|++++.+++++++..
T Consensus 203 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 203 VVKRICDRVA-VMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHHhCCEEE-EEECCEEEEecCHHHHhcC
Confidence 6778999996 5999999999988777653
No 78
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-38 Score=303.98 Aligned_cols=196 Identities=12% Similarity=0.126 Sum_probs=164.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..++++||++.|+.. ..+ |++|||+|++|+++||+||||||||||+|+|+|+.. |++|+|.++|.+...
T Consensus 3 ~~i~~~~l~k~~~~~--~~~---l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~- 71 (293)
T COG1131 3 EVIEVRNLTKKYGGD--KTA---LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVK- 71 (293)
T ss_pred ceeeecceEEEeCCC--CEE---EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCcc-
Confidence 357889999999832 256 555999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+..++|++|++.+++. |+.+++.+....... .....++++.++++.++|.+.
T Consensus 72 ---------------~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~------ 129 (293)
T COG1131 72 ---------------EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEERIEELLELFGLEDK------ 129 (293)
T ss_pred ---------------CHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHcCCchh------
Confidence 123456678999999998877 999999885543322 114456789999999999872
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------C-ccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g-~tvIiiTH--~ 294 (361)
.++++.+||+|||||++||+|| ||||+|||+ | +|||++|| +
T Consensus 130 -----------~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 130 -----------ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred -----------hCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence 3788999999999999999999 999999875 5 89999999 7
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++..+||||+ +|++|+++..|+++++...
T Consensus 199 e~~~~~d~v~-il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 199 EAEELCDRVI-ILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHHhCCEEE-EEeCCEEEEeCCHHHHHHh
Confidence 8888899996 5999999999988876543
No 79
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-38 Score=308.83 Aligned_cols=201 Identities=16% Similarity=0.223 Sum_probs=165.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||++ ||+++|++. . + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~-~l~k~~~~~--~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 1 MLEL-NFKQQLGDL--C-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred CeEE-EEEEEeCCE--E-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc
Confidence 4777 999999752 1 2 5999999999999999999999999999999999 99999999998764100
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
........+..++|++|++.+++. ++.+|+.++.. ....+++.++++.+++.+
T Consensus 67 -----------~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~-------- 120 (352)
T PRK11144 67 -----------KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEP-------- 120 (352)
T ss_pred -----------cccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCch--------
Confidence 001122334578999999988886 99999987643 123456788899999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. ++|+|+||| ++
T Consensus 121 ---------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 121 ---------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 45899999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+..+||+++ +|++|++++.|++++++..|...++..++.
T Consensus 192 ~~~~~d~i~-~l~~G~i~~~g~~~~i~~~p~~~~~~~~~g 230 (352)
T PRK11144 192 ILRLADRVV-VLEQGKVKAFGPLEEVWASSAMRPWLPKEE 230 (352)
T ss_pred HHHhCCEEE-EEeCCEEEEecCHHHHHhCcchhhhhcccC
Confidence 789999996 599999999999999999988666555554
No 80
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.2e-38 Score=299.04 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=160.6
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 4 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 72 (269)
T PRK11831 4 VANLVDMRGVSFTRGNR---CI---FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIP 72 (269)
T ss_pred ccceEEEeCeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcc
Confidence 34579999999999653 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......+..+++++|++.+++. ++.+|+.++.......+.....+++.++++.+++.+
T Consensus 73 ~~~------------~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----- 135 (269)
T PRK11831 73 AMS------------RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG----- 135 (269)
T ss_pred ccC------------hhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----
Confidence 100 00111224457888998877775 888998765321111122333456777899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 136 ------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 136 ------------AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 45889999999999999999999 999999753 689999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++..+||+++ +|++|+++..|++++++..+
T Consensus 204 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 204 VPEVLSIADHAY-IVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHHhhCEEE-EEECCEEEEeCCHHHHhcCC
Confidence 46778999996 59999999999998887654
No 81
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-38 Score=302.01 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=162.0
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
|+++|++++|++.. ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 78999999996421 0246 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++ .++..++.+|+.++.... ..+....++++.++++.++|.+.
T Consensus 75 ~~-----------~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~----- 137 (290)
T PRK13634 75 KK-----------NKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEE----- 137 (290)
T ss_pred cc-----------cchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChh-----
Confidence 00 011223455688999986 456669999998765421 22334455678889999999732
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 -----------~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 138 -----------LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35889999999999999999999 999999653 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|+++..|++++++..+
T Consensus 207 ~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 207 EDAARYADQIV-VMHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 56778999996 59999999999998887654
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.7e-38 Score=291.69 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=155.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+.+ .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~--~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 68 (243)
T TIGR02315 1 MLEVENLSKVYPNG--KQA---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITK-- 68 (243)
T ss_pred CeEEEeeeeecCCC--cce---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhh--
Confidence 47899999999722 245 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhcccccccCCCcc
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
.. .......+..+++++|++.+++. ++.+|+.++..... .......++++.++++.+++..
T Consensus 69 ------~~----~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 137 (243)
T TIGR02315 69 ------LR----GKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD- 137 (243)
T ss_pred ------CC----HHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-
Confidence 00 00111234568899999887775 89999986542110 0112334567788899999976
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
.+++++.+||||||||++||||| ||||++||. ++|||+
T Consensus 138 ----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 201 (243)
T TIGR02315 138 ----------------KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201 (243)
T ss_pred ----------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45889999999999999999999 999999753 789999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+|| +.+..+||+++ +|++|++++.|+++++
T Consensus 202 ~tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 202 NLHQVDLAKKYADRIV-GLKAGEIVFDGAPSEL 233 (243)
T ss_pred EeCCHHHHHHhcCeEE-EEECCEEEecCCHHHh
Confidence 999 56678999996 5999999999988765
No 83
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-38 Score=300.54 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=161.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++.....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~-- 72 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT---LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLT-- 72 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECC--
Confidence 36899999999964221246 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH-HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. .+. .++.+|+.++.... ..++.+..+++.++++.+++.+
T Consensus 73 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 132 (279)
T PRK13650 73 -------------EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQD------ 132 (279)
T ss_pred -------------cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHh------
Confidence 1122234567899999974 443 49999998764321 2334455677888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++.+.+||||||||++||||| ||||++||. |+|||++||
T Consensus 133 -----------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 133 -----------FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45899999999999999999999 999999642 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+ .+|||++ +|++|+++..|++++++..+
T Consensus 202 ~~~-~~~dri~-~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 202 DEV-ALSDRVL-VMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHH-HhCCEEE-EEECCEEEEECCHHHHHcCh
Confidence 455 5799995 59999999999999887764
No 84
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-38 Score=291.25 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=154.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 68 (241)
T cd03256 1 IEVENLSKTYPNGK--KA---LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKL-- 68 (241)
T ss_pred CEEeeEEEecCCcc--EE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEecccc--
Confidence 46899999997522 35 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE-------ecCCChhhhhhhcccccccCCCcce
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~-------~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
. .......+..+++++|++.+++. ++.+|+.++.... .........+++.++++.+++.+
T Consensus 69 ------~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 136 (241)
T cd03256 69 ------K----GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-- 136 (241)
T ss_pred ------C----HhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh--
Confidence 0 00012234568889999887775 8999997654211 01112334566778899999976
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 137 ---------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 201 (241)
T cd03256 137 ---------------KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVS 201 (241)
T ss_pred ---------------hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999999999999999999 999999653 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
|| +.+..+||+++ +|++|++++.|+++++
T Consensus 202 tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 202 LHQVDLAREYADRIV-GLKDGRIVFDGPPAEL 232 (241)
T ss_pred eCCHHHHHHhCCEEE-EEECCEEEeecCHHHh
Confidence 99 56777999996 5999999999888765
No 85
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.9e-38 Score=296.52 Aligned_cols=216 Identities=15% Similarity=0.160 Sum_probs=163.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++||++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 1 i~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 1 VRFSDVTKRFGIL---TV---LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred CEEEEEEEEeCCe---eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccccc
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999987631000
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+....+. ........+..+++++|++.+++. ++.+|+.++.............+++.++++.+++.+
T Consensus 70 ~~~~~~~~--~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------- 138 (252)
T TIGR03005 70 RNGPLVPA--DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD--------- 138 (252)
T ss_pred cccccccc--chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh---------
Confidence 00000000 000112234568889999887764 889999865321111223344566788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 139 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 139 --------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA 210 (252)
T ss_pred --------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 45889999999999999999999 999999642 789999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
..+|||++ +|++|++++.|++++++..+.++++..
T Consensus 211 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~ 245 (252)
T TIGR03005 211 REFADRVC-FFDKGRIVEQGKPDEIFRQPKEERTRE 245 (252)
T ss_pred HHhcCEEE-EEECCEEEEeCCHHHHhcCCCcHHHHH
Confidence 78999996 599999999999999987776655433
No 86
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.9e-38 Score=313.97 Aligned_cols=198 Identities=14% Similarity=0.148 Sum_probs=163.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||++.|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~~L~~~nls~~y~~~---~v---L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~-- 68 (402)
T PRK09536 2 PMIDVSDLSVEFGDT---TV---LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVE-- 68 (402)
T ss_pred ceEEEeeEEEEECCE---EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcC--
Confidence 579999999999753 45 666999999999999999999999999999999999 99999999998765
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-cC--CChhhhhhhcccccccCCCcceeE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RS--DSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-~~--~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.....+.++.+++++|++.++.. ++.+|+.++...+. .. .....++++.++++.+++.+
T Consensus 69 -------------~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~---- 131 (402)
T PRK09536 69 -------------ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ---- 131 (402)
T ss_pred -------------cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch----
Confidence 12223345668899998876544 88899987643211 11 12345677889999999987
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 132 -------------~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd 198 (402)
T PRK09536 132 -------------FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD 198 (402)
T ss_pred -------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 45899999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++.++|||++ +|++|+++..|++++++..+
T Consensus 199 l~~~~~~adrii-~l~~G~iv~~G~~~ev~~~~ 230 (402)
T PRK09536 199 LDLAARYCDELV-LLADGRVRAAGPPADVLTAD 230 (402)
T ss_pred HHHHHHhCCEEE-EEECCEEEEecCHHHHhCcH
Confidence 67889999996 59999999999999876653
No 87
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=313.08 Aligned_cols=222 Identities=13% Similarity=0.167 Sum_probs=179.8
Q ss_pred hHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 65 DAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 65 ~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
..|+.+++..+++...+ ..-.++++||+|+|++.. .++ |+|+||++++||.+||+|+||||||||+++|.
T Consensus 310 a~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~-~~~---L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~ 385 (573)
T COG4987 310 ARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQ-TKA---LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385 (573)
T ss_pred HHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCc-cch---hhccceeecCCCeEEEECCCCCCHHHHHHHHH
Confidence 44899998877664322 111689999999998754 367 55599999999999999999999999999999
Q ss_pred hhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCCh
Q 018083 139 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 218 (361)
Q Consensus 139 gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~ 218 (361)
|.++ |++|+|.++|.++. .+.-++.+..++++.|.+.+|..|+++|+.++-+ .
T Consensus 386 ~~~~-----~~~G~i~~~g~~~~---------------~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-------~ 438 (573)
T COG4987 386 GAWD-----PQQGSITLNGVEIA---------------SLDEQALRETISVLTQRVHLFSGTLRDNLRLANP-------D 438 (573)
T ss_pred hccC-----CCCCeeeECCcChh---------------hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-------C
Confidence 9999 99999999999886 4455567778899999999999999999986543 4
Q ss_pred hhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----
Q 018083 219 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 284 (361)
Q Consensus 219 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----- 284 (361)
...+++.++++++|+.+.+...++.+-. .++.-...||||||||++|||+| ||||.|||+
T Consensus 439 AsDEel~~aL~qvgL~~l~~~~p~gl~t------~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~ 512 (573)
T COG4987 439 ASDEELWAALQQVGLEKLLESAPDGLNT------WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512 (573)
T ss_pred CCHHHHHHHHHHcCHHHHHHhChhhhhc------hhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHH
Confidence 5567788899999988743221222222 23445567999999999999998 999999875
Q ss_pred ----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+||||| -.-.+.||||+ ||++|+++++|++.+++.+
T Consensus 513 vL~ll~~~~~~kTll~vTHrL~~le~~drIi-vl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 513 VLALLFEHAEGKTLLMVTHRLRGLERMDRII-VLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHHhcCCeEEEEecccccHhhcCEEE-EEECCeeeecCCHHhhhcc
Confidence 999999999 44557899995 6999999999999998873
No 88
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-38 Score=293.51 Aligned_cols=199 Identities=19% Similarity=0.282 Sum_probs=159.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~---- 66 (242)
T cd03295 1 IEFENVTKRYGGGK--KA---VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIR---- 66 (242)
T ss_pred CEEEEEEEEeCCcc--eE---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcC----
Confidence 46899999997521 35 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCc-ceeEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNF 243 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~-~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++.... ..+.....+++.++++.+++.+ .
T Consensus 67 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~------- 127 (242)
T cd03295 67 -----------EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAE------- 127 (242)
T ss_pred -----------cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHH-------
Confidence 11112234567889999888865 8999998653211 1222344567788899999974 1
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+.++++.+||||||||++||||| ||||++||. |+|||++|| .+
T Consensus 128 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~ 198 (242)
T cd03295 128 ---------FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198 (242)
T ss_pred ---------HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 34888999999999999999999 999999642 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+..+||+++ +|++|++++.|+++++...+.+
T Consensus 199 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~ 229 (242)
T cd03295 199 AFRLADRIA-IMKNGEIVQVGTPDEILRSPAN 229 (242)
T ss_pred HHHhCCEEE-EEECCEEEEecCHHHHHcCCCC
Confidence 778999996 5999999999998887665443
No 89
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-38 Score=300.15 Aligned_cols=203 Identities=13% Similarity=0.174 Sum_probs=161.8
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++||+++|+++. ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 78999999996421 0235 666999999999999999999999999999999999 9999999999877410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ........+..++++||++. +++.++.+|+.++.... ..+.....+++.++++.+||...
T Consensus 75 ~-----------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~----- 137 (286)
T PRK13646 75 T-----------KDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRD----- 137 (286)
T ss_pred c-----------ccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChh-----
Confidence 0 00112234567899999873 56669999998764321 22334556678889999999721
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+.++.+.+||||||||++||||| ||||++||. |+|||++||
T Consensus 138 -----------~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 138 -----------VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 34789999999999999999999 999999653 799999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|+++..|++++++..+
T Consensus 207 ~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~ 237 (286)
T PRK13646 207 NEVARYADEVI-VMKEGSIVSQTSPKELFKDK 237 (286)
T ss_pred HHHHHhCCEEE-EEECCEEEEECCHHHHHhCH
Confidence 46778999996 59999999999998887653
No 90
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-38 Score=298.77 Aligned_cols=198 Identities=16% Similarity=0.277 Sum_probs=160.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++|++++|++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 2 ~~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~- 70 (277)
T PRK13652 2 HLIETRDLCYSYSGSK--EA---LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITK- 70 (277)
T ss_pred ceEEEEEEEEEeCCCC--ce---eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc-
Confidence 5789999999996432 35 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
......+..+++++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+
T Consensus 71 --------------~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 129 (277)
T PRK13652 71 --------------ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEE------ 129 (277)
T ss_pred --------------CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 111233456788999863 44458889987654311 2233444567788999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++.+.+||||||||++||||| ||||++||. +.|||++||
T Consensus 130 -----------~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 130 -----------LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++..+|||++ +|++|+++..|++++++..+
T Consensus 199 ~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 199 DLVPEMADYIY-VMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHHhCCEEE-EEECCeEEEECCHHHHhcCH
Confidence 56778999996 59999999999999887653
No 91
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-37 Score=284.80 Aligned_cols=184 Identities=18% Similarity=0.240 Sum_probs=149.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 66 (213)
T cd03259 1 LELKGLSKTYGSV---RA---LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG--- 66 (213)
T ss_pred CeeeeeEEEeCCe---ee---ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc---
Confidence 5789999999752 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 67 ------------~~--~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (213)
T cd03259 67 ------------VP--PERRNIGMVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEG--------- 122 (213)
T ss_pred ------------Cc--hhhccEEEEcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 01 113457889999887765 8899988654311 1122344566788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 123 --------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 123 --------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194 (213)
T ss_pred --------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence 45889999999999999999999 999999652 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+||+++ +|++|++++.|
T Consensus 195 ~~~~d~v~-~l~~G~i~~~g 213 (213)
T cd03259 195 LALADRIA-VMNEGRIVQVG 213 (213)
T ss_pred HHhcCEEE-EEECCEEEecC
Confidence 78999996 59999987654
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=290.65 Aligned_cols=197 Identities=14% Similarity=0.156 Sum_probs=159.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~- 69 (241)
T PRK10895 2 ATLTAKNLAKAYKGR---RV---VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISL- 69 (241)
T ss_pred ceEEEeCcEEEeCCE---EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC-
Confidence 478999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..... .+..+++++|++.+++. ++.+|+.+........+....++++.++++.+++.+
T Consensus 70 --------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 129 (241)
T PRK10895 70 --------------LPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH------ 129 (241)
T ss_pred --------------CCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH------
Confidence 11111 23467889999877775 899998865432111222344566788899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++.+.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 130 -----------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred -----------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 45888999999999999999999 999999753 889999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+..+||+++ +|++|++++.|++++++..
T Consensus 199 ~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 199 ETLAVCERAY-IVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHhcCEEE-EEeCCeEEeeCCHHHHhcC
Confidence 6789999996 5999999999998887653
No 93
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-38 Score=294.59 Aligned_cols=216 Identities=18% Similarity=0.191 Sum_probs=164.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 3 ~~~~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 3 SPPKMEARGLSFFYGDF---QA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CCcEEEEeeeEEEECCe---ee---ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 34689999999999753 45 6669999999999999999999999999999999631100147999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 77 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 139 (253)
T PRK14242 77 DP-------------HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV---- 139 (253)
T ss_pred cc-------------ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh----
Confidence 10 0111233456888999887776688999987643211111233456777888888885421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 140 ---------~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~ 210 (253)
T PRK14242 140 ---------KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ 210 (253)
T ss_pred ---------hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence 0135788999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+||+++ +|++|++++.|++++++..+.+..+
T Consensus 211 ~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~ 244 (253)
T PRK14242 211 AARVSDVTA-FFYMGKLIEVGPTEQIFTRPREKQT 244 (253)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHcCCCchHH
Confidence 778999996 5999999999999988877665544
No 94
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=293.63 Aligned_cols=210 Identities=21% Similarity=0.257 Sum_probs=161.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~- 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQV---EV---LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF- 73 (250)
T ss_pred CceEEEEeeEEEECCe---ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC-
Confidence 3579999999999753 45 6669999999999999999999999999999999972100136999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.......+..++|++|++.+++. ++.+|+.++...... ....+..+++.++++.+++.+.+.
T Consensus 74 --------------~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 137 (250)
T PRK14247 74 --------------KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-- 137 (250)
T ss_pred --------------cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh--
Confidence 11122334568889999876654 899999875431111 122344567788899999864210
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
..+++.+.+||||||||++||||| ||||++||. +.|+|++|| +
T Consensus 138 -----------~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 206 (250)
T PRK14247 138 -----------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQ 206 (250)
T ss_pred -----------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 035888999999999999999999 999999753 789999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+..+||+++ +|++|++++.|++++++..+.+
T Consensus 207 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14247 207 QAARISDYVA-FLYKGQIVEWGPTREVFTNPRH 238 (250)
T ss_pred HHHHhcCEEE-EEECCeEEEECCHHHHHcCCcc
Confidence 5678999996 5999999999999988776543
No 95
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=287.55 Aligned_cols=189 Identities=13% Similarity=0.148 Sum_probs=153.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--- 66 (220)
T cd03265 1 IEVENLVKKYGDF---EA---VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVR--- 66 (220)
T ss_pred CEEEEEEEEECCE---Ee---eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999976541
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
...+.+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 123 (220)
T cd03265 67 -------------EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFVGLLE--------- 123 (220)
T ss_pred -------------ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 001224457888998877765 8889987653211 1222344567888999999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 124 --------~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~ 195 (220)
T cd03265 124 --------AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA 195 (220)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999653 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
..+|||++ +|++|+++..+++++
T Consensus 196 ~~~~d~i~-~l~~G~i~~~~~~~~ 218 (220)
T cd03265 196 EQLCDRVA-IIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhCCEEE-EEeCCEEEEeCChHH
Confidence 78999996 599999998887654
No 96
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-37 Score=287.14 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=153.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|+++. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~~-~~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 68 (220)
T cd03263 1 LQIRNLTKTYKKGT-KPA---VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRT--- 68 (220)
T ss_pred CEEEeeEEEeCCCC-cee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 57899999997521 145 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ....+..+++++|++.+++. ++.+|+.+..... ..+.....+++.++++.+++.+
T Consensus 69 ------------~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 125 (220)
T cd03263 69 ------------D-RKAARQSLGYCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTD--------- 125 (220)
T ss_pred ------------c-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 0 11234567889998887765 8889987643211 1122334567788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||+|||||++||||| ||||++||. +.|||++|| +.+..
T Consensus 126 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 126 --------KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred --------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 45888999999999999999999 999999753 689999999 46678
Q ss_pred ccchhhHhhhhhhhcCCCCcccc
Q 018083 299 LTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+||+++ +|++|++++.|+++++
T Consensus 198 ~~d~i~-~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 198 LCDRIA-IMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCEEE-EEECCEEEecCCHHHc
Confidence 899996 5999999998887653
No 97
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=301.89 Aligned_cols=225 Identities=17% Similarity=0.186 Sum_probs=188.4
Q ss_pred hccccccccceeeecC-cceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 82 IGSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~-~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++|+++||++.|.. +.+.+++++ |||+|.+||++||||+||||||-..+.|+|+++...-..-+|+|.|+|.++
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~---isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKG---ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeecc---ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 4578999999999963 334688666 999999999999999999999999999999998544334579999999997
Q ss_pred CcceEeEeeeecCCCcceeeeecCC-CCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~-~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
-... .-.+...|+ .|+++||+|. +.|. +|.+.|...+..+++..+.+.++++.++|+.+|+.+
T Consensus 80 l~~s------------e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~- 146 (534)
T COG4172 80 LAAS------------ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE- 146 (534)
T ss_pred hcCC------------HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc-
Confidence 5211 112233343 5788999986 3344 899999998888888888999999999999999975
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
++..++.||++|||||||||+||.|| ||||.+||- |..+++
T Consensus 147 -------------p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lf 213 (534)
T COG4172 147 -------------PEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILF 213 (534)
T ss_pred -------------hhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEE
Confidence 22367999999999999999999999 999999752 999999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
||| ..+.++||||+ ||.+|++++.|+++++|..|.|+|++.++.+
T Consensus 214 ITHDL~iVr~~ADrV~-VM~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 214 ITHDLGIVRKFADRVY-VMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred EeccHHHHHHhhhhEE-EEeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 999 57889999997 5999999999999999999999998776654
No 98
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.2e-38 Score=308.01 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=161.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 38 ~~~~i~i~nl~k~y~~~---~~---l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~ 106 (340)
T PRK13536 38 STVAIDLAGVSKSYGDK---AV---VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVP 106 (340)
T ss_pred CceeEEEEEEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECC
Confidence 34579999999999753 56 566999999999999999999999999999999999 99999999998864
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. . ....+..++|++|++.+++. ++.+|+.+..... ..+.....+++.++++.+++.+
T Consensus 107 ~---------------~-~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~----- 164 (340)
T PRK13536 107 A---------------R-ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLES----- 164 (340)
T ss_pred c---------------c-hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 1 12345568889998877655 8888887532211 1222344566778899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||+|| ||||++||+ |+|||++||
T Consensus 165 ------------~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l 232 (340)
T PRK13536 165 ------------KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 232 (340)
T ss_pred ------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 45889999999999999999999 999999763 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++..+||||+ +|++|+++..|+++++...
T Consensus 233 ~e~~~~~d~i~-il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 233 EEAERLCDRLC-VLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHHHhCCEEE-EEECCEEEEEcCHHHHHhh
Confidence 67889999996 5999999999999888654
No 99
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-38 Score=295.73 Aligned_cols=217 Identities=19% Similarity=0.225 Sum_probs=164.6
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 9 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 9 AQPQIKVENLNLWYGEK---QA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred cceeEEEeeeEEEeCCe---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 45689999999999753 45 6669999999999999999999999999999999971100027999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.... ..+.....+++.++++.+++....
T Consensus 83 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~---- 144 (258)
T PRK14268 83 EP-------------DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDET---- 144 (258)
T ss_pred cc-------------cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcch----
Confidence 10 001112345678889988777678889998754211 112223345677788888884311
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+|||||+||++||||| ||||++||. ++|||++|| ++
T Consensus 145 ---------~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~ 215 (258)
T PRK14268 145 ---------SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQ 215 (258)
T ss_pred ---------hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 0035788999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
+..+|||++ +|++|++++.|++++++..+.+.+++.
T Consensus 216 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK14268 216 AARISDYTG-FFLMGELIEFGQTRQIFHNPREKSTED 251 (258)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCCCCHHHHH
Confidence 778999996 599999999999999988776665443
No 100
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-37 Score=297.13 Aligned_cols=201 Identities=17% Similarity=0.201 Sum_probs=159.2
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
.++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 26 ~~~~~~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~-- 92 (269)
T cd03294 26 SKEEILKKTGQT---VG---VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMS-- 92 (269)
T ss_pred hhhhhhhhcCCc---eE---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccC--
Confidence 577999999763 45 666999999999999999999999999999999999 99999999998764100
Q ss_pred EeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
...+.. .+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 93 ----------~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 152 (269)
T cd03294 93 ----------RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEG--------- 152 (269)
T ss_pred ----------hhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 000111 12457889998877765 8999998754311 1122344566788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 153 --------~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~ 224 (269)
T cd03294 153 --------WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA 224 (269)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999653 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+||+++ +|++|++++.|++++++..+.+.+
T Consensus 225 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~ 256 (269)
T cd03294 225 LRLGDRIA-IMKDGRLVQVGTPEEILTNPANDY 256 (269)
T ss_pred HHhcCEEE-EEECCEEEEeCCHHHHHhCcCcHH
Confidence 78999996 599999999999998887655433
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=294.50 Aligned_cols=215 Identities=16% Similarity=0.137 Sum_probs=162.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH---EV---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 4679999999999753 45 666999999999999999999999999999999999 999999999987631
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.... ...+.... .......+..++|++|++.+++. ++.+|+.++............++++.++++.+++...
T Consensus 72 ~~~~-~~~~~~~~-~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----- 144 (257)
T PRK10619 72 VRDK-DGQLKVAD-KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDER----- 144 (257)
T ss_pred cccc-cccccccc-chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChh-----
Confidence 0000 00000000 00011234568999999888775 8999987643211112223455678889999999762
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
..++++.+||||||||++||||| ||||++||. |+|||++|| .
T Consensus 145 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~ 213 (257)
T PRK10619 145 -----------AQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213 (257)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 12778999999999999999999 999999753 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+..+|||++ +|++|+++..|++++++..+.+
T Consensus 214 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~ 245 (257)
T PRK10619 214 FARHVSSHVI-FLHQGKIEEEGAPEQLFGNPQS 245 (257)
T ss_pred HHHHhcCEEE-EEECCEEEEeCCHHHhhhCccC
Confidence 6677899996 5999999999999888765543
No 102
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.3e-37 Score=271.62 Aligned_cols=193 Identities=17% Similarity=0.159 Sum_probs=159.2
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+|+++++++..+... ...+ |++|+|.|.+||.++||||||||||||+-.++|+.+ |++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~I---L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~ 76 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSI---LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeehhhhhhhhcCCCcceeE---eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhh
Confidence 3799999999987543 2456 555999999999999999999999999999999999 999999999998862
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.... ..... .+.+++|||.+.++|+ +..+||..++...+. .....+..+.++|+.+|+...
T Consensus 77 ldEd------------~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~R---- 139 (228)
T COG4181 77 LDED------------ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-SSADSRAGAKALLEAVGLGKR---- 139 (228)
T ss_pred cCHH------------HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC-ccccHHHHHHHHHHHhCcccc----
Confidence 1110 01122 3468999999999988 899999998875432 234455678889999999984
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
+..+|.+||||+|||||||||+ ||||.+||. |.|+++|||
T Consensus 140 -------------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 140 -------------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred -------------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 4999999999999999999999 999999763 999999999
Q ss_pred CccccccchhhHhhhhhhhcCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~ 315 (361)
..++.-|+|+ +.|..|+|++.
T Consensus 207 ~~LA~Rc~R~-~r~~~G~l~~~ 227 (228)
T COG4181 207 PQLAARCDRQ-LRLRSGRLVED 227 (228)
T ss_pred HHHHHhhhhe-eeeecceeccC
Confidence 4666779999 57999999864
No 103
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=297.18 Aligned_cols=200 Identities=13% Similarity=0.212 Sum_probs=161.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|+++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~~ 73 (283)
T PRK13636 4 YILKVEELNYNYSDGT--HA---LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDYS 73 (283)
T ss_pred ceEEEEeEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCCC
Confidence 4799999999996432 45 666999999999999999999999999999999999 9999999999876300
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+
T Consensus 74 -------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 133 (283)
T PRK13636 74 -------------RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH------ 133 (283)
T ss_pred -------------cchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 1112234566889999873 44558999998754321 1233444567888899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 134 -----------~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 134 -----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 45899999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|++++.|++++++..+
T Consensus 203 ~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~ 233 (283)
T PRK13636 203 DIVPLYCDNVF-VMKEGRVILQGNPKEVFAEK 233 (283)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 56678999996 59999999999998887643
No 104
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.9e-38 Score=302.16 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=158.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~i~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~- 70 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK---VV---VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPS- 70 (303)
T ss_pred cEEEEEeEEEEeCCe---EE---EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc-
Confidence 368999999999753 46 566999999999999999999999999999999999 999999999987631
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+..++|++|++.+++. ++.+|+.+..... ..+....++++.++++.+++.+
T Consensus 71 ---------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~------- 127 (303)
T TIGR01288 71 ---------------RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLES------- 127 (303)
T ss_pred ---------------cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 011234568889998877765 8889887532211 1223344556778889999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. |.|||++|| ++
T Consensus 128 ----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 128 ----------KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 45889999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+..+||+++ +|++|+++..|+++++...
T Consensus 198 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 198 AERLCDRLC-VLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhCCEEE-EEECCEEEEEcCHHHHHhh
Confidence 778999996 5999999999999888654
No 105
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=292.01 Aligned_cols=208 Identities=16% Similarity=0.153 Sum_probs=162.3
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++.. |++|+|.++|+++.
T Consensus 2 ~~~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~--- 70 (246)
T PRK14269 2 IAKTTNLNLFYGKK---QA---LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVK--- 70 (246)
T ss_pred ceeeeeeEEEECCE---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecc---
Confidence 57899999999752 45 666999999999999999999999999999999974111 68999999998774
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC-CChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++.++.+|+.++....... .....++++.++++.+++.+.+.
T Consensus 71 ------------~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 133 (246)
T PRK14269 71 ------------NQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK----- 133 (246)
T ss_pred ------------cCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-----
Confidence 111223355688999998888779999998754321111 12334456778899999964210
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
..+++.+.+||||||||++||||| |||+++||. ++|||++|| .++.
T Consensus 134 --------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 134 --------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred --------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 034778899999999999999999 999999653 899999999 5677
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+||+++ +|++|++++.|++++++..+.+++
T Consensus 206 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 236 (246)
T PRK14269 206 RVADYTA-FFHLGELIEFGESKEFFENPKQEK 236 (246)
T ss_pred hhCcEEE-EEECCEEEEECCHHHHHhCCCcHH
Confidence 8999996 599999999999998887665443
No 106
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=293.61 Aligned_cols=218 Identities=17% Similarity=0.213 Sum_probs=164.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|+.. .+ |+++||+|++||+++|+||||||||||+++|+|++++....+++|+|.++|+++.
T Consensus 9 ~~~~l~i~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 9 KQEVYQINGMNLWYGQH---HA---LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred CCceEEEeeEEEEECCe---ee---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 34589999999999753 45 6669999999999999999999999999999999861100126899999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++..........+..+++.++++.+++.+.+
T Consensus 83 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 145 (259)
T PRK14274 83 KG-------------KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV---- 145 (259)
T ss_pred cc-------------ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh----
Confidence 10 0111233456888999987776788999986543211112233445677788888885421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 146 ---------~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 216 (259)
T PRK14274 146 ---------KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ 216 (259)
T ss_pred ---------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 0135788999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
+..+|||++ +|++|++++.|++++++..+.++++..
T Consensus 217 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (259)
T PRK14274 217 AARVSDQTA-FFYMGELVECNDTNKMFSNPDDQRTLD 252 (259)
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHhhCCCCHHHHH
Confidence 778999996 599999999999999988766554433
No 107
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-37 Score=351.67 Aligned_cols=229 Identities=11% Similarity=0.152 Sum_probs=183.3
Q ss_pred hhHHHHHHHHhHHHHHh------------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 64 RDAVFREVLQSYDQLRT------------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~------------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
+..|+.++++.++++.. ...+.|+++||+|+|+++...++ |+++||+|++|+++|||||||||||
T Consensus 1132 a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v---L~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1132 SFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI---YKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc---ccCeeEEEcCCCEEEEECCCCCCHH
Confidence 34488999875443210 11235999999999974322356 5559999999999999999999999
Q ss_pred hhhhhhhhhhccc-------------------------------------------------ccccccceeeecccccCc
Q 018083 132 SLVNRISKVFEND-------------------------------------------------KFASERAQVTYNSSVGDG 162 (361)
Q Consensus 132 TLl~~I~gl~~~~-------------------------------------------------~~~p~~G~I~i~G~~i~~ 162 (361)
||+++|.|+|++. ...|++|+|++||.++.
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~- 1287 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDIC- 1287 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHH-
Confidence 9999999999921 00126999999999987
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.+...++|..+++|+|++.+|..||++||.++.. +...+++.++++.+++++.+..-++
T Consensus 1288 --------------~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-------~at~eeI~~A~k~A~l~~fI~~LP~ 1346 (1466)
T PTZ00265 1288 --------------DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-------DATREDVKRACKFAAIDEFIESLPN 1346 (1466)
T ss_pred --------------hCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 5677788999999999999999999999998743 3345678889999999887766677
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-----------------CCccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------DDKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-----------------~g~tvIiiTH-~~ 295 (361)
.+.+.|++ ....||||||||++||||| |||||+|| .++|+|+||| -.
T Consensus 1347 GydT~VGe------~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1347 KYDTNVGP------YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420 (1466)
T ss_pred ccCCccCC------CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH
Confidence 77776665 3557999999999999999 99999964 2689999999 45
Q ss_pred cccccchhhHhhhh----hhhc-CCCCccccccC
Q 018083 296 LLSLTDRARIRTYL----GELL-GIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~----G~iv-~~g~~~~i~~~ 324 (361)
..+.||+|+ +|++ |+++ +.|++++++..
T Consensus 1421 ti~~aD~Iv-vl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1421 SIKRSDKIV-VFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHhCCEEE-EEeCCCCCCCEEEEecCHHHHHhc
Confidence 567799995 6999 9965 89999999863
No 108
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.3e-37 Score=295.51 Aligned_cols=208 Identities=12% Similarity=0.090 Sum_probs=158.2
Q ss_pred ccccccceeeecCc------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 85 LTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 85 ~lei~nl~~~Y~~~------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
+|+++||++.|++. ....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV---LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE---eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence 68999999999631 01246 566999999999999999999999999999999999 99999999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
++... . .......+..++|++|++. +++ .++.+|+.++.............+++.++++.+++..
T Consensus 74 ~i~~~--------~----~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 141 (265)
T TIGR02769 74 DLYQL--------D----RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS 141 (265)
T ss_pred Ecccc--------C----HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 76410 0 0001113456788899863 333 3788887654321111222344567788899999963
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvI 289 (361)
. ++++++.+||||||||++||||| ||||++||. ++|||
T Consensus 142 ~----------------~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii 205 (265)
T TIGR02769 142 E----------------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205 (265)
T ss_pred h----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 2 35889999999999999999999 999999653 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
++|| +.+..+||+++ +|++|++++.|++++++. +.++++
T Consensus 206 ivsH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~-~~~~~~ 246 (265)
T TIGR02769 206 FITHDLRLVQSFCQRVA-VMDKGQIVEECDVAQLLS-FKHPAG 246 (265)
T ss_pred EEeCCHHHHHHHhcEEE-EEeCCEEEEECCHHHHcC-CCCHHH
Confidence 9999 46678999996 599999999999998876 344443
No 109
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=293.07 Aligned_cols=216 Identities=18% Similarity=0.209 Sum_probs=165.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 10 ~~~~l~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGKF---HA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCCe---EE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 45679999999999753 45 6669999999999999999999999999999999851100147999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.......+.....+++.++++.+++.+.+
T Consensus 84 ~~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---- 146 (260)
T PRK10744 84 TP-------------KQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV---- 146 (260)
T ss_pred cc-------------ccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 10 0112234566888999987776789999987543221222334456778889999885311
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 147 ---------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 147 ---------KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred ---------HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 689999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+||+++ +|++|++++.|++++++..+.++++
T Consensus 218 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 251 (260)
T PRK10744 218 AARCSDYTA-FMYLGELIEFGNTDTIFTKPAKKQT 251 (260)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHH
Confidence 678999996 5999999999999998877666554
No 110
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.5e-37 Score=284.97 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=152.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (222)
T cd03224 1 LEVENLNAGYGKS---QI---LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITG--- 66 (222)
T ss_pred CEEeeEEeecCCe---eE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCC---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhccccccc-CCCcceeEEEE
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVN 242 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~-gl~~~~~~~~~ 242 (361)
....+ .+..++|++|++.+++. ++.+|+.++..... .....+++.++++.+ ++.+
T Consensus 67 ------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~------- 124 (222)
T cd03224 67 ------------LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKE------- 124 (222)
T ss_pred ------------CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhh-------
Confidence 11111 23457889999888876 89999987643211 123344556667776 4655
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| ++
T Consensus 125 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 194 (222)
T cd03224 125 ----------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194 (222)
T ss_pred ----------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 35889999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCcccccc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+..+||+++ +|++|+++..+++++++.
T Consensus 195 ~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 195 ALEIADRAY-VLERGRVVLEGTAAELLA 221 (222)
T ss_pred HHHhccEEE-EeeCCeEEEeCCHHHHhc
Confidence 779999996 599999999888776543
No 111
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=304.31 Aligned_cols=221 Identities=15% Similarity=0.169 Sum_probs=169.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|.+.. ..+ |+++||+|++|++++|+||||||||||+++|+|+.+.....|++|+|.++|.++.
T Consensus 77 ~~~~i~~~nls~~y~~~~-~~~---L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRT-KHV---LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred cCceEEEEeeEEEecCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 345899999999996432 245 6669999999999999999999999999999999862111157999999998874
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ......+.++.+++++|++.++..++.+|+.++.......+.+...+.+.++++.+++.+.+
T Consensus 153 ~-------------~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l---- 215 (329)
T PRK14257 153 S-------------KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV---- 215 (329)
T ss_pred c-------------cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh----
Confidence 1 01223345677899999999887899999997643211111122233456677888775421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
....++++..||||||||++||||| ||||++||. ++|||+||| +.
T Consensus 216 ---------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~ 286 (329)
T PRK14257 216 ---------KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ 286 (329)
T ss_pred ---------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 799999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+..+||||+ +|++|++++.|++++++..|.++.+..+
T Consensus 287 i~~~~Drii-vl~~G~i~e~g~~~~l~~~~~~~~~~~~ 323 (329)
T PRK14257 287 AQRISDETV-FFYQGWIEEAGETKTIFIHPKNKRTKDY 323 (329)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 778899996 6999999999999999998887654433
No 112
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.9e-37 Score=324.54 Aligned_cols=224 Identities=14% Similarity=0.193 Sum_probs=174.2
Q ss_pred hhhhHHHHHHHHhHHHHHh--h------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRT--R------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~--~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+.+..++.++++.+++.+. . ..+.++++|++++|+++. ++ |+++||+|++|++++|+||||||||||
T Consensus 303 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~--~i---L~~inl~i~~G~~v~IvG~sGsGKSTL 377 (588)
T PRK13657 303 APKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QG---VEDVSFEAKPGQTVAIVGPTGAGKSTL 377 (588)
T ss_pred HHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCC--ce---ecceeEEECCCCEEEEECCCCCCHHHH
Confidence 3444467777654332111 0 123589999999997543 35 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.++|.++. .+...+.+..++||+|++.+|..++.+|+.++..
T Consensus 378 l~lL~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~--- 434 (588)
T PRK13657 378 INLLQRVFD-----PQSGRILIDGTDIR---------------TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP--- 434 (588)
T ss_pred HHHHhcCcC-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEEecCcccccccHHHHHhcCCC---
Confidence 999999999 99999999999886 4555667788999999999999999999987532
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
+..++++..+++.+++.+.+...++.+.+.+ ......||||||||++||||| ||||++||.
T Consensus 435 ----~~~d~~i~~al~~~~l~~~i~~lp~gldt~i------~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~ 504 (588)
T PRK13657 435 ----DATDEEMRAAAERAQAHDFIERKPDGYDTVV------GERGRQLSGGERQRLAIARALLKDPPILILDEATSALDV 504 (588)
T ss_pred ----CCCHHHHHHHHHHhCHHHHHHhCcccccchh------cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 2234556677888887664433333333322 334567999999999999999 999999763
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 505 ~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii-~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 505 ETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRIL-VFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEE-EEECCEEEEeCCHHHHHHC
Confidence 799999999 55667899995 6999999999999888653
No 113
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.6e-37 Score=286.84 Aligned_cols=193 Identities=15% Similarity=0.173 Sum_probs=155.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~--- 66 (232)
T cd03218 1 LRAENLSKRYGKR---KV---VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITK--- 66 (232)
T ss_pred CeEEEEEEEeCCE---Ee---eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 5789999999753 45 566999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
..... .+..+++++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 125 (232)
T cd03218 67 ------------LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITH-------- 125 (232)
T ss_pred ------------CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 11111 12357888998887776 8999988754321 1122334456778899999986
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 126 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~ 196 (232)
T cd03218 126 ---------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196 (232)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 478
Q ss_pred ccccchhhHhhhhhhhcCCCCcccccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
..+||+++ +|++|+++..|++++++.
T Consensus 197 ~~~~d~i~-~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 197 LSITDRAY-IIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhCCEEE-EEECCeEEEEeCHHHhhc
Confidence 89999996 599999999888877654
No 114
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.7e-37 Score=285.54 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=152.2
Q ss_pred ccccccceeeecCcce-eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~-~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++... .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA---VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVVK- 71 (218)
T ss_pred CeEEEEEEEecCCCCcccee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEccc-
Confidence 4789999999975311 135 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...+.+..+++++|++.+++. ++.+|+.+..... .....+..+++.++++.+++.+
T Consensus 72 ---------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (218)
T cd03266 72 ---------------EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEE------- 128 (218)
T ss_pred ---------------CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH-------
Confidence 112334568889999887775 8999987643211 1223345567788999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| .+
T Consensus 129 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 129 ----------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred ----------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g 316 (361)
+..+||+++ +|++|++++.|
T Consensus 199 ~~~~~d~i~-~l~~G~i~~~~ 218 (218)
T cd03266 199 VERLCDRVV-VLHRGRVVYEG 218 (218)
T ss_pred HHHhcCEEE-EEECCEEeecC
Confidence 778999996 59999987653
No 115
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=327.06 Aligned_cols=219 Identities=14% Similarity=0.181 Sum_probs=171.8
Q ss_pred ccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 83 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
.++|+++||++.|+.. ...++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~ 382 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHA---VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEII 382 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEE---EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEE
Confidence 4689999999999621 01246 556999999999999999999999999999999999 9999999
Q ss_pred ecccccCcceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHH-HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 155 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 155 i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
++|+++... . .......+..++||||++ .+++. ++.+|+.++............++++.++++.+
T Consensus 383 ~~g~~i~~~--------~----~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (623)
T PRK10261 383 FNGQRIDTL--------S----PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV 450 (623)
T ss_pred ECCEECCcC--------C----HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 999876410 0 001112345688999987 35554 88888876543211112234456788899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g 285 (361)
+|.+. .+++++++||||||||++||||| ||||++||. |
T Consensus 451 gL~~~----------------~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g 514 (623)
T PRK10261 451 GLLPE----------------HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 (623)
T ss_pred CCCHH----------------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 99632 35899999999999999999999 999999753 7
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhhh
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 338 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~~ 338 (361)
.|||+||| +.+..+||||+ +|++|++++.|++++++..|.+++++.++..+.
T Consensus 515 ~tvi~isHdl~~v~~~~dri~-vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~~ 568 (623)
T PRK10261 515 IAYLFISHDMAVVERISHRVA-VMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVP 568 (623)
T ss_pred CEEEEEeCCHHHHHHhCCEEE-EEECCEEEEecCHHHHhcCCCCHHHHHHHhhCC
Confidence 89999999 57778999996 599999999999999999888888776665543
No 116
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.3e-37 Score=281.94 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=149.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~--- 66 (213)
T cd03301 1 VELENVTKRFGNV---TA---LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTD--- 66 (213)
T ss_pred CEEEeeEEEECCe---ee---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
... .+..+++++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 67 ------------~~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (213)
T cd03301 67 ------------LPP--KDRDIAMVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEH--------- 122 (213)
T ss_pred ------------CCc--ccceEEEEecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 111 12357888999887765 8889988753321 1223444567788899999986
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 123 --------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 123 --------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA 194 (213)
T ss_pred --------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45899999999999999999999 999999752 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+||+++ +|++|++++.|
T Consensus 195 ~~~~d~i~-~l~~g~~~~~g 213 (213)
T cd03301 195 MTMADRIA-VMNDGQIQQIG 213 (213)
T ss_pred HHhcCeEE-EEECCEEEecC
Confidence 78999996 59999998765
No 117
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.1e-37 Score=293.47 Aligned_cols=207 Identities=12% Similarity=0.095 Sum_probs=157.4
Q ss_pred ccccccccceeeecCc------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 83 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++|+++||+++|+.. ...++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA---VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce---eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEEC
Confidence 4579999999999631 01245 666999999999999999999999999999999999 999999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCC
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl 233 (361)
|.++.. ......+..++|++|++. +++. ++.+++.+..............+++.++++.+++
T Consensus 74 g~~~~~---------------~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l 138 (267)
T PRK15112 74 DHPLHF---------------GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL 138 (267)
T ss_pred CEECCC---------------CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC
Confidence 987641 001112235778888764 2333 6666665543211111223445677889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Ccc
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 287 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~t 287 (361)
.+. ..++++.+||||||||++||||| ||||++||. |.|
T Consensus 139 ~~~----------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 202 (267)
T PRK15112 139 LPD----------------HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGIS 202 (267)
T ss_pred ChH----------------HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcE
Confidence 532 34778899999999999999999 999999652 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
||++|| +++..+||+++ +|++|++++.|++++++..+.+..
T Consensus 203 viivsH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 245 (267)
T PRK15112 203 YIYVTQHLGMMKHISDQVL-VMHQGEVVERGSTADVLASPLHEL 245 (267)
T ss_pred EEEEeCCHHHHHHhcCEEE-EEECCEEEecCCHHHHhcCCCCHH
Confidence 999999 56778899996 599999999999988887665443
No 118
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=291.12 Aligned_cols=210 Identities=19% Similarity=0.230 Sum_probs=162.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh---hccccccc--ccceeeeccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFAS--ERAQVTYNSS 158 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl---~~~~~~~p--~~G~I~i~G~ 158 (361)
++|+++|+++.|+.. ++ |+++||+|++|++++|+||||||||||+++|+|+ ++ | ++|+|.++|.
T Consensus 2 ~~l~~~~~~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~~~~G~i~~~g~ 70 (250)
T PRK14245 2 VKIDARDVNFWYGDF---HA---LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-----ATRLEGEIRIDGR 70 (250)
T ss_pred cEEEEEEEEEEECCE---eE---EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-----CCCCceEEEECCE
Confidence 579999999999753 45 6669999999999999999999999999999997 34 4 5899999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
++... .......+..++|++|++.+++.++.+|+.++.............+++.++++.+++.+.+
T Consensus 71 ~~~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 136 (250)
T PRK14245 71 NIYDK-------------GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV- 136 (250)
T ss_pred ecccc-------------cccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-
Confidence 76410 0011233456888999887776688899887543211111223455677888889886421
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++||
T Consensus 137 ------------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 137 ------------KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred ------------hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 0135788999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
..+..+|||++ +|++|++++.|++++++..+.+++++
T Consensus 205 ~~~~~~~~d~v~-~l~~G~~~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14245 205 MQQAARVSDKTA-FFYMGEMVEYDDTKKIFTNPEKEATQ 242 (250)
T ss_pred HHHHHhhCCEEE-EEECCEEEEECCHHHHhcCCCChHHH
Confidence 46778999996 59999999999999998877655543
No 119
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-37 Score=282.40 Aligned_cols=197 Identities=14% Similarity=0.184 Sum_probs=158.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+..|+. +++ |++|||++++||+++|+||||+|||||+|+|+|+.+ +.+|+|.++|+|++.
T Consensus 2 ~mL~v~~l~~~YG~---~~~---L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit~- 69 (237)
T COG0410 2 PMLEVENLSAGYGK---IQA---LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDITG- 69 (237)
T ss_pred CceeEEeEeecccc---eeE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecCC-
Confidence 58999999999987 477 555999999999999999999999999999999999 999999999999972
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccC-CCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~~ 240 (361)
....+ .+.-++||||.-.+|+. ||.+|+..+...... +...+..++++.+.+- |.+
T Consensus 70 --------------~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lke----- 128 (237)
T COG0410 70 --------------LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKE----- 128 (237)
T ss_pred --------------CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHH-----
Confidence 22222 34457889999999999 999999987653221 1111111333333331 223
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
..+++..+|||||||.+|||||| |||+.||.+ +.||++|.+
T Consensus 129 ------------r~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn 196 (237)
T COG0410 129 ------------RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196 (237)
T ss_pred ------------HhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 45889999999999999999999 999999643 779999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+.++|||.+ +|..|+++..|+.+++...|.
T Consensus 197 ~~~Al~iaDr~y-vle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 197 ARFALEIADRGY-VLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred HHHHHHhhCEEE-EEeCCEEEEecCHHHHhcCHH
Confidence 68889999996 599999999999999987654
No 120
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=294.94 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=159.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++.. .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 69 (275)
T PRK13639 1 ILETRDLKYSYPDGT--EA---LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYD- 69 (275)
T ss_pred CEEEEEEEEEeCCCC--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECccc-
Confidence 478999999996432 35 666999999999999999999999999999999999 9999999999876310
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..++|++|++. ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 ------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------- 129 (275)
T PRK13639 70 ------------KKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEG------- 129 (275)
T ss_pred ------------cchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch-------
Confidence 0111223456889999863 44558899998754321 1223344567888999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
++++++.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 130 ----------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 130 ----------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 45889999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+..+||+++ +|++|++++.|++++++..+
T Consensus 200 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 200 VPVYADKVY-VMSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCh
Confidence 778999996 59999999999999887654
No 121
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.9e-37 Score=321.33 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=180.4
Q ss_pred hhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+....|+.++++.+++.... ....++++|++++|++.. .++ |+++||+|++|++++|+|+||||||||++
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~inl~i~~G~~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 301 LAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRD-RPA---LDSISLVIEPGETVALVGRSGSGKSTLVN 376 (571)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCC-Ccc---ccCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 34455888888654432211 123589999999997532 245 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|+++|.++. .+...+.+..++|++|++.+|..++.+||.++..
T Consensus 377 lL~gl~~-----~~~G~I~i~g~~i~---------------~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~----- 431 (571)
T TIGR02203 377 LIPRFYE-----PDSGQILLDGHDLA---------------DYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT----- 431 (571)
T ss_pred HHHhccC-----CCCCeEEECCEeHH---------------hcCHHHHHhhceEEccCcccccccHHHHHhcCCC-----
Confidence 9999999 99999999998876 4555667888999999999999999999986532
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
++..++++.++++.+++.+.+.+.++.+.+.|++ ....||||||||++||||+ ||||++||.
T Consensus 432 -~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~------~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 -EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE------NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred -CCCCHHHHHHHHHHcChHHHHHhCcCcccceecC------CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 1344567888899999887554445555554444 2357999999999999998 999999763
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ....+.||+|+ +|++|++++.|++++++..
T Consensus 505 ~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii-~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 505 ERLVQAALERLMQGRTTLVIAHRLSTIEKADRIV-VMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEE-EEeCCEEEeeCCHHHHHHc
Confidence 799999999 56678899995 6999999999999998754
No 122
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=5.3e-37 Score=281.52 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=147.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+.+. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~--~i---l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~-- 68 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV--AA---LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNR-- 68 (214)
T ss_pred CEEEEeeeEEeCCCc--ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc--
Confidence 478999999995322 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+. .......+..++|++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 69 ------~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (214)
T TIGR02673 69 ------LR----GRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEH-------- 129 (214)
T ss_pred ------CC----HHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 00 00011234567889999888765 8899988753311 1222344567788999999986
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 130 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 130 ---------KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 34889999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhh
Q 018083 297 LSLTDRARIRTYLGE 311 (361)
Q Consensus 297 ~~~aDri~vvl~~G~ 311 (361)
..+||+++ +|++|+
T Consensus 201 ~~~~d~i~-~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVI-ILDDGR 214 (214)
T ss_pred HHhcCEEE-EecCCC
Confidence 78999996 588874
No 123
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-37 Score=278.59 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=163.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||++++++++|++. ++++++ |||++++|++++|+|||||||||++|+|++++. |++|.|+++|.+..
T Consensus 1 Ml~v~~l~K~y~~~--v~Avrd---VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~--- 67 (245)
T COG4555 1 MLEVTDLTKSYGSK--VQAVRD---VSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTV--- 67 (245)
T ss_pred CeeeeehhhhccCH--Hhhhhh---eeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccc---
Confidence 68999999999873 468544 999999999999999999999999999999999 99999999998864
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
-.+...++.++.++...-++.. |+.+|+.|-...+ ...+.+.+.++.++.+.++|.+
T Consensus 68 -------------~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~-------- 125 (245)
T COG4555 68 -------------RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLE-------- 125 (245)
T ss_pred -------------cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHH--------
Confidence 1222345667776644444444 8889988744322 3456778889999999999998
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiTH--~~~ 296 (361)
+++++..+||.||||||+||||| |||++||| +|++||++|| .++
T Consensus 126 ---------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 126 ---------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred ---------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH
Confidence 67999999999999999999999 99999964 2999999999 688
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
..+|||++ ++++|+++..|+.+++....
T Consensus 197 ealCDrvi-vlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 197 EALCDRVI-VLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HHhhheEE-EEecCcEEEcCCHHHHHHHH
Confidence 89999995 59999999999998876543
No 124
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-37 Score=283.46 Aligned_cols=186 Identities=16% Similarity=0.199 Sum_probs=149.3
Q ss_pred cccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 86 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 86 lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|+++|+++.|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~--- 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA---LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVT--- 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEE---EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECc---
Confidence 57899999997521 0145 666999999999999999999999999999999999 99999999997763
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
..+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 -----------------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 123 (220)
T cd03293 70 -----------------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSG-------- 123 (220)
T ss_pred -----------------cccCcEEEEecccccccCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 013457888888877774 8889987654311 1222344567788999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| .+
T Consensus 124 ---------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 124 ---------FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 45889999999999999999999 999999753 789999999 45
Q ss_pred cccccchhhHhhh--hhhhcCCCCc
Q 018083 296 LLSLTDRARIRTY--LGELLGIPPA 318 (361)
Q Consensus 296 ~~~~aDri~vvl~--~G~iv~~g~~ 318 (361)
+..+||+++ +|+ +|++++.++.
T Consensus 195 ~~~~~d~i~-~l~~~~G~i~~~~~~ 218 (220)
T cd03293 195 AVFLADRVV-VLSARPGRIVAEVEV 218 (220)
T ss_pred HHHhCCEEE-EEECCCCEEEEEEEe
Confidence 778999996 598 7999877654
No 125
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-37 Score=291.76 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=164.6
Q ss_pred hhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 80 TRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 80 ~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
.+..++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|++
T Consensus 16 ~~~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 89 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGEK---RA---VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89 (268)
T ss_pred CCCCceEEEEEEEEEeCCc---ee---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEE
Confidence 3456789999999999753 45 66699999999999999999999999999999986311111589999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
+... .......+..++|++|++.+++.++.+|+.++............++.+.++++.+++...+
T Consensus 90 i~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-- 154 (268)
T PRK14248 90 ILDS-------------NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-- 154 (268)
T ss_pred cccc-------------cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch--
Confidence 6410 0111223456888999987777788999886542111101122344566677888775311
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-- 293 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++||
T Consensus 155 -----------~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 223 (268)
T PRK14248 155 -----------KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNM 223 (268)
T ss_pred -----------HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCH
Confidence 0135788999999999999999999 999999753 689999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
+.+..+|||++ +|++|++++.|++++++..+.++++..
T Consensus 224 ~~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 261 (268)
T PRK14248 224 QQALRVSDRTA-FFLNGDLVEYDQTEQIFTSPKQQKTED 261 (268)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHHH
Confidence 46778999996 599999999999999888776655433
No 126
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=295.86 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=159.3
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++|+++.|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 578999999997421 0235 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......+..++|++|++ .++..++.+|+.++.... ....+...+++.++++.+++...
T Consensus 74 ~~~-----------~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~---- 137 (287)
T PRK13641 74 ETG-----------NKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSED---- 137 (287)
T ss_pred ccc-----------cchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 000 001122345678899986 355458899998754311 12234455678889999999631
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 ------------~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 138 ------------LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205 (287)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++..+||+++ +|++|+++..|++++++..
T Consensus 206 ~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 206 DDVAEYADDVL-VLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHhcC
Confidence 56778999996 5999999999999887664
No 127
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.7e-38 Score=310.88 Aligned_cols=204 Identities=16% Similarity=0.191 Sum_probs=163.6
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc----cCcce
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTY 164 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~----i~~~~ 164 (361)
.++.++|+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|++ +..
T Consensus 28 ~~~~~~~g~---~~~---l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~-- 94 (382)
T TIGR03415 28 EEILDETGL---VVG---VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVAN-- 94 (382)
T ss_pred HHHHHhhCC---EEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEeccccccc--
Confidence 445666765 355 666999999999999999999999999999999999 999999999963 220
Q ss_pred EeEeeeecCCCcceeeeecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ...+.+.+ ..++|+||++.+++. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 95 ------~~----~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~------- 156 (382)
T TIGR03415 95 ------CD----AATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQ------- 156 (382)
T ss_pred ------CC----HHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 00 01112222 468999999999886 9999999875422 2234455678889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.++++.+||||||||++||||| |||+++||+ ++|||+||| +
T Consensus 157 ----------~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 157 ----------WADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45899999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
++.++||||+ +|++|++++.|++++++..|...+++.++
T Consensus 227 e~~~l~DrI~-vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 265 (382)
T TIGR03415 227 EALKIGNRIA-IMEGGRIIQHGTPEEIVLNPANDYVADFV 265 (382)
T ss_pred HHHHhCCEEE-EEECCEEEEecCHHHHhhCcchHHHHHHh
Confidence 7789999996 59999999999999998877665554443
No 128
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=292.86 Aligned_cols=215 Identities=18% Similarity=0.219 Sum_probs=163.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|++++....|++|+|+++|+++.
T Consensus 16 ~~~~l~~~nl~~~~~~~---~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGEK---QA---LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECCE---EE---EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 56789999999999753 45 6669999999999999999999999999999999971000038999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.. .......+..+++++|++.+++.++.+|+.++...... .......+++.++++.+++.+.+
T Consensus 90 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 153 (267)
T PRK14235 90 DP-------------RLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--- 153 (267)
T ss_pred cc-------------ccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh---
Confidence 10 01112334567888998877766889999875432111 11233456678889999986411
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++|| +
T Consensus 154 ----------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~ 223 (267)
T PRK14235 154 ----------KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223 (267)
T ss_pred ----------hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHH
Confidence 0034778999999999999999999 999999753 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+..+||+++ +|++|+++..|++++++..+.++.
T Consensus 224 ~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~ 257 (267)
T PRK14235 224 QAARVSQRTA-FFHLGNLVEVGDTEKMFTNPDDPR 257 (267)
T ss_pred HHHhhCCEEE-EEECCEEEEeCCHHHHHhCCCCHH
Confidence 6778999996 599999999999998887665443
No 129
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-37 Score=288.82 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=162.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..|+++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred CeEEEEEEEEEECCc---ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 468999999999753 45 666999999999999999999999999999999976110012689999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++............++++.++++.+++.+.+.
T Consensus 76 -------------~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~----- 137 (250)
T PRK14240 76 -------------DIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK----- 137 (250)
T ss_pred -------------ccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-----
Confidence 01112234567888998877667888999875432111112334566777788887753110
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
..+++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 138 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 209 (250)
T PRK14240 138 --------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQAS 209 (250)
T ss_pred --------HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHH
Confidence 135788999999999999999999 999999753 789999999 4677
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+||+++ +|++|+++..+++++++..+.++.+.
T Consensus 210 ~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14240 210 RISDKTA-FFLNGEIVEFGDTVDLFTNPKDKRTE 242 (250)
T ss_pred hhCCEEE-EEECCEEEEeCCHHHHHhCCCChHHH
Confidence 8999996 59999999999999988777665543
No 130
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=290.26 Aligned_cols=212 Identities=19% Similarity=0.259 Sum_probs=160.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|+++++...|++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 2 KFAIETVNLRVYYGSN---HV---IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred cceEEEEeEEEEeCCe---ee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 4579999999999753 45 66699999999999999999999999999999999811000259999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .......+..+++++|++.+++. ++.+|+.++...... ...+...+++.++++.+++...+
T Consensus 76 ~-------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 139 (253)
T PRK14267 76 P-------------DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV--- 139 (253)
T ss_pred c-------------ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch---
Confidence 0 01111234568889999888776 899999875431111 12233445677888888885421
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++++.+||||||||++||||| |||+++||. ++|||++|| +
T Consensus 140 ----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~ 209 (253)
T PRK14267 140 ----------KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA 209 (253)
T ss_pred ----------hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHH
Confidence 0035788999999999999999999 999999753 689999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+..+||+++ +|++|++++.|++++++..+.+
T Consensus 210 ~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~ 241 (253)
T PRK14267 210 QAARVSDYVA-FLYLGKLIEVGPTRKVFENPEH 241 (253)
T ss_pred HHHhhCCEEE-EEECCEEEEeCCHHHHHhCCCc
Confidence 6778999996 5999999999999988766543
No 131
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-36 Score=278.29 Aligned_cols=176 Identities=15% Similarity=0.185 Sum_probs=142.8
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|++++|++.. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~~--~~---l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~----- 65 (205)
T cd03226 1 RIENISFSYKKGT--EI---LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIK----- 65 (205)
T ss_pred CcccEEEEeCCcC--ce---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhh-----
Confidence 4789999997522 45 666999999999999999999999999999999999 99999999997763
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ...+..++|++|++. ++..++.+|+.++.... ....+++.++++.+++.+
T Consensus 66 ----------~---~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~l~~~~l~~--------- 118 (205)
T cd03226 66 ----------A---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----DAGNEQAETVLKDLDLYA--------- 118 (205)
T ss_pred ----------h---HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----CccHHHHHHHHHHcCCch---------
Confidence 0 123345788999863 34458999998754311 112356778899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
++++++.+||||||||++||||| ||||++||. +.|||++|| +++.
T Consensus 119 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 190 (205)
T cd03226 119 --------LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190 (205)
T ss_pred --------hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhc
Q 018083 298 SLTDRARIRTYLGELL 313 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv 313 (361)
.+||+++ +|++|+++
T Consensus 191 ~~~d~i~-~l~~G~iv 205 (205)
T cd03226 191 KVCDRVL-LLANGAIV 205 (205)
T ss_pred HhCCEEE-EEECCEEC
Confidence 8999996 59999875
No 132
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-37 Score=293.03 Aligned_cols=198 Identities=12% Similarity=0.149 Sum_probs=156.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~- 68 (271)
T PRK13638 1 MLATSDLWFRYQDE---PV---LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYS- 68 (271)
T ss_pred CeEEEEEEEEcCCc---cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcccc-
Confidence 58899999999753 45 666999999999999999999999999999999999 9999999999876300
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..++|++|++. ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 ------------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (271)
T PRK13638 69 ------------KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQH------- 128 (271)
T ss_pred ------------cCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHh-------
Confidence 0111223456788999875 23346778887653211 1222344556778899999976
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 129 ----------~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 129 ----------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred ----------HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45888999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+..+||+++ +|++|++++.|++++++..+
T Consensus 199 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 199 IYEISDAVY-VLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHhcCh
Confidence 678999996 59999999999998887653
No 133
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=289.21 Aligned_cols=211 Identities=19% Similarity=0.195 Sum_probs=161.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc---ccceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p---~~G~I~i~G~~i 160 (361)
++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.+.. | ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~~---~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 4 PILQVSDLSVYYNKK---KA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNI 74 (252)
T ss_pred ceEEEEeeEEEECCe---ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEEC
Confidence 479999999999753 45 66699999999999999999999999999999985311 5 589999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......+..+++++|++.+++.++.+|+.++.............+++.++++.+++.+.+
T Consensus 75 ~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 138 (252)
T PRK14239 75 YSP-------------RTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV--- 138 (252)
T ss_pred cCc-------------ccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH---
Confidence 410 0111223456888999987776788999986543111111223445667788888875321
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 139 ----------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 208 (252)
T PRK14239 139 ----------KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208 (252)
T ss_pred ----------HHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHH
Confidence 0135788999999999999999999 999999753 689999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
.+..+|||++ +|++|++++.|++++++..|.+..+
T Consensus 209 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 243 (252)
T PRK14239 209 QASRISDRTG-FFLDGDLIEYNDTKQMFMNPKHKET 243 (252)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCCCCHHH
Confidence 6778999996 5999999999999999887765443
No 134
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=289.38 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=164.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.++....|++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGEK---QA---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECCe---ee---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 4689999999999753 45 66699999999999999999999999999999998711000278999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++.++.+|+.++.............+++.++++.+++.+.+.
T Consensus 76 ~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 138 (251)
T PRK14270 76 K-------------DVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK---- 138 (251)
T ss_pred c-------------cccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh----
Confidence 0 01112234567889999887777888999865432111112334456677888888753110
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
..+++.+.+||+|||||++||||| ||||++||. +.|||++|| +++
T Consensus 139 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 209 (251)
T PRK14270 139 ---------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA 209 (251)
T ss_pred ---------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHH
Confidence 035788999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
..+|||++ +|++|++++.|++++++..+.++.+..
T Consensus 210 ~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14270 210 SRVSDYTA-FFLMGDLIEFNKTEKIFLEPQKKETED 244 (251)
T ss_pred HHhcCEEE-EEECCeEEEeCCHHHHhcCCCChHHHH
Confidence 78999996 599999999999999988877665443
No 135
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.7e-37 Score=280.84 Aligned_cols=187 Identities=19% Similarity=0.208 Sum_probs=145.3
Q ss_pred cccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 86 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 86 lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 71 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA---LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKL- 71 (218)
T ss_pred CeEeeeEEEecCCCcceeE---EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhhc-
Confidence 57899999997521 0145 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
+ ...... .+..++|++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 -------~----~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (218)
T cd03255 72 -------S----EKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLGD------- 132 (218)
T ss_pred -------c----hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 000011 23457889999887776 8999998764321 1122334567788999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 133 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 133 ----------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred ----------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 45889999999999999999999 999999643 789999999 4
Q ss_pred ccccccchhhHhhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~i 312 (361)
.+. +||+++ +|++|++
T Consensus 203 ~~~-~~d~v~-~l~~G~i 218 (218)
T cd03255 203 LAE-YADRII-ELRDGKI 218 (218)
T ss_pred HHh-hhcEEE-EeeCCcC
Confidence 554 899996 5999874
No 136
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-37 Score=289.02 Aligned_cols=217 Identities=18% Similarity=0.220 Sum_probs=164.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 3 ~~l~~~nl~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGKN---HA---VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCCe---eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 468999999999753 45 666999999999999999999999999999999985110003689999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..+++++|++.+++. ++.+|+.++.......+.....+++.++++.+++...+
T Consensus 77 -------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 138 (252)
T PRK14256 77 -------------GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV----- 138 (252)
T ss_pred -------------cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----
Confidence 01112335568889999888775 88999986543211112233445677888888885411
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+||||||||++||||| |||+++||. ++|||++|| +++
T Consensus 139 --------~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~ 210 (252)
T PRK14256 139 --------KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQA 210 (252)
T ss_pred --------hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHH
Confidence 0034778999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
..+||+++ +|++|++++.|++++++..+.+++++.+
T Consensus 211 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 246 (252)
T PRK14256 211 ARVSDYTA-FFYMGDLVECGETKKIFTTPEKKQTEDY 246 (252)
T ss_pred HhhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHHHHH
Confidence 78999996 5999999999999999888877665433
No 137
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-37 Score=286.91 Aligned_cols=194 Identities=11% Similarity=0.164 Sum_probs=154.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 3 KVMLSFDKVSAHYGKI---QA---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred ccEEEEEeEEEeeCCc---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 3579999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhccccccc-CCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~-gl~~~~~~ 239 (361)
....+ .+..+++++|++.+++. ++.+|+.++... .......+.+.++++.+ ++.+
T Consensus 72 ---------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---~~~~~~~~~~~~~l~~~~~l~~---- 129 (237)
T PRK11614 72 ---------------WQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFF---AERDQFQERIKWVYELFPRLHE---- 129 (237)
T ss_pred ---------------CCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhc---cChhHHHHHHHHHHHHHHHHHH----
Confidence 11111 23457888998887775 889998875421 11223344556666766 4655
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
..++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 130 -------------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 130 -------------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred -------------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 34778999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+++.++|||++ +|++|+++..|++++++.
T Consensus 197 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 197 ANQALKLADRGY-VLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHhhCCEEE-EEeCCEEEeeCCHHHHhc
Confidence 46789999996 599999999999988864
No 138
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-37 Score=292.35 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=157.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ml~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 68 (274)
T PRK13644 1 MIRLENVSYSYPDGT--PA---LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGD-- 68 (274)
T ss_pred CEEEEEEEEEcCCCC--ce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCc--
Confidence 478999999996432 35 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCccee-eeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 165 FLQEYTIPRGSNSFS-LYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~-~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. ....+..+++++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+
T Consensus 69 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~------ 128 (274)
T PRK13644 69 -------------FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEK------ 128 (274)
T ss_pred -------------cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH------
Confidence 11 1123456888999875 33458999998754321 1233444567888899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
..++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 129 -----------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 129 -----------YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 45889999999999999999999 999999753 899999999 4
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
.+ ..||+++ +|++|+++..|++++++..+
T Consensus 198 ~~-~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 198 EL-HDADRII-VMDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred HH-hhCCEEE-EEECCEEEEECCHHHHhcCh
Confidence 55 5699996 59999999999998887654
No 139
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-37 Score=288.52 Aligned_cols=212 Identities=16% Similarity=0.198 Sum_probs=164.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeecc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNS 157 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G 157 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|
T Consensus 2 ~~~l~~~~l~~~~~~~---~i---l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g 70 (251)
T PRK14249 2 DPKIKIRGVNFFYHKH---QV---LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDN 70 (251)
T ss_pred CceEEEEEEEEEECCe---eE---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECC
Confidence 3579999999999753 45 666999999999999999999999999999999998 65 69999999
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.++... .......+..++|++|++.+++.++.+|+.++.........+...+.+.++++.+++.+.+
T Consensus 71 ~~~~~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 137 (251)
T PRK14249 71 ENIYSP-------------NLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137 (251)
T ss_pred EEcccc-------------ccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh
Confidence 776310 0111233566889999988877789999987543211111122344566667777775321
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 293 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH 293 (361)
..++++.+.+||||||||++||||| ||||++||. ++|||++||
T Consensus 138 -------------~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh 204 (251)
T PRK14249 138 -------------KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTH 204 (251)
T ss_pred -------------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 0145889999999999999999999 999999753 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
.++..+||+++ +|++|+++..|++++++..|.++.+..
T Consensus 205 ~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14249 205 NMQQAARASDWTG-FLLTGDLVEYGRTGEIFSRPRDKRTED 244 (251)
T ss_pred CHHHHHhhCCEEE-EEeCCeEEEeCCHHHHHhCCCChHHHH
Confidence 57778999996 599999999999999988877665443
No 140
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=9.2e-37 Score=281.88 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=148.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~--~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 68 (222)
T PRK10908 1 MIRFEHVSKAYLGGR--QA---LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITR-- 68 (222)
T ss_pred CEEEEeeEEEecCCC--eE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc--
Confidence 478999999994322 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+. .......+..++|++|++.+++. ++.+|+.++.... .....+..+++.++++.+++.+
T Consensus 69 ------~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (222)
T PRK10908 69 ------LK----NREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLD-------- 129 (222)
T ss_pred ------CC----hhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 00 00011134567889998876555 8889998754311 1222344456778899999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. +.|+|++|| +++
T Consensus 130 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 130 ---------KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred ---------hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 789999999 567
Q ss_pred ccccchhhHhhhhhhhcC
Q 018083 297 LSLTDRARIRTYLGELLG 314 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~ 314 (361)
..+||+++ +|++|+++.
T Consensus 201 ~~~~d~i~-~l~~G~i~~ 217 (222)
T PRK10908 201 SRRSYRML-TLSDGHLHG 217 (222)
T ss_pred HHhCCEEE-EEECCEEcc
Confidence 78899996 599999865
No 141
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=306.06 Aligned_cols=227 Identities=13% Similarity=0.147 Sum_probs=189.2
Q ss_pred HHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 67 VFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 67 ~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
++-++++++++.++. ..+-++++|++|.|.++. ++ |+||||++.+|+++|||||||+||||++|+|.
T Consensus 511 nmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k--~v---l~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 511 NMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGK--PV---LSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCC--ce---eecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 788899888887655 344699999999998875 45 77799999999999999999999999999999
Q ss_pred hhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCCh
Q 018083 139 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 218 (361)
Q Consensus 139 gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~ 218 (361)
++++ .++|.|.+||+|+. .+....+|+.+|.||||..+|..+|..||.++-+ .
T Consensus 586 Rffd-----v~sGsI~iDgqdIr---------------nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-------~ 638 (790)
T KOG0056|consen 586 RFFD-----VNSGSITIDGQDIR---------------NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-------S 638 (790)
T ss_pred HHhh-----ccCceEEEcCchHH---------------HHHHHHHHHhcCcccCcceeecceeeeheeecCC-------C
Confidence 9999 99999999999997 4666778999999999999999999999997654 4
Q ss_pred hhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----
Q 018083 219 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 284 (361)
Q Consensus 219 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----- 284 (361)
+..+++.++++.+++++.+.-.+..|=.-|++. .-.||||+||||||||++ ||.||+||.
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGER------GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~ 712 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER------GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERA 712 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc------ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHH
Confidence 556788888888988887644444444433333 335999999999999998 999999763
Q ss_pred ----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 285 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 285 ----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
++|-|+|.| -+-.-.||.|. ++++|+|++.|.|++++....-.|..+
T Consensus 713 IQaaL~rlca~RTtIVvAHRLSTivnAD~IL-vi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 713 IQAALARLCANRTTIVVAHRLSTIVNADLIL-VISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred HHHHHHHHhcCCceEEEeeeehheecccEEE-EEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 899999999 44556799996 599999999999999988765555433
No 142
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.8e-37 Score=290.27 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=155.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 4 ~~~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 4 QPLLSVRGLTKLYGPR---KG---CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQL 72 (258)
T ss_pred CceEEEeeeEEEcCCc---ee---eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCccccc
Confidence 3579999999999753 45 666999999999999999999999999999999999 999999999987210
Q ss_pred ceEeEeeeecCCCcceeeee----cCCCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 163 TYFLQEYTIPRGSNSFSLYD----TRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d----~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
.+.. ...... .+..++|++|++. +++. ++.+|+.+.............++++.++++.+++.+
T Consensus 73 ~~i~----------~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 73 RDLY----------ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA 142 (258)
T ss_pred cccc----------cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh
Confidence 0000 011101 2345777888763 2222 555666543211111112234566778899999963
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvI 289 (361)
. .+++.+.+||||||||++||||| ||||++||. |.|||
T Consensus 143 ~----------------~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 143 A----------------RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred h----------------HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 1 34889999999999999999999 999999642 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
++|| ..+..+||+++ +|++|++++.|++++++..+.+.+
T Consensus 207 ~isH~~~~~~~~~d~i~-~l~~g~i~~~~~~~~~~~~~~~~~ 247 (258)
T PRK11701 207 IVTHDLAVARLLAHRLL-VMKQGRVVESGLTDQVLDDPQHPY 247 (258)
T ss_pred EEeCCHHHHHHhcCEEE-EEECCEEEEeCCHHHHhcCCCCHH
Confidence 9999 46667899996 599999999999998887665433
No 143
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-37 Score=292.46 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=159.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||++.|+... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~---l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~-- 72 (279)
T PRK13635 4 EIIRVEHISFRYPDAA-TYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLS-- 72 (279)
T ss_pred ceEEEEEEEEEeCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECC--
Confidence 5799999999996422 245 666999999999999999999999999999999999 99999999998875
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH-HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. ++. .++.+|+.++.... .....+.++++.++++.++|.+
T Consensus 73 -------------~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 132 (279)
T PRK13635 73 -------------EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMED------ 132 (279)
T ss_pred -------------cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChh------
Confidence 1112233456889999974 443 48999998764321 1233445567888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 133 -----------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 133 -----------FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 45899999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.+. .|||++ +|++|++++.|++++++..
T Consensus 202 ~~~~-~~d~i~-~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 202 DEAA-QADRVI-VMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHH-cCCEEE-EEECCEEEEECCHHHHhcC
Confidence 4454 599996 5999999999998887664
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-37 Score=289.72 Aligned_cols=198 Identities=14% Similarity=0.112 Sum_probs=157.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 8 ~~~~l~i~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 76 (265)
T PRK10575 8 SDTTFALRNVSFRVPGR---TL---LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLE 76 (265)
T ss_pred CCceEEEeeEEEEECCE---EE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehh
Confidence 44679999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCcce
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.......+..+++++|++.+++. ++.+|+.++...... .......+++.++++.+++.+
T Consensus 77 ---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 139 (265)
T PRK10575 77 ---------------SWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-- 139 (265)
T ss_pred ---------------hCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH--
Confidence 11112234567888888665554 888998875321110 112234456788899999976
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++
T Consensus 140 ---------------~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~ 204 (265)
T PRK10575 140 ---------------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204 (265)
T ss_pred ---------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999999999999999999 999999642 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|| +.+..+||+++ +|++|++++.|+++++..
T Consensus 205 sH~~~~i~~~~d~i~-~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 205 LHDINMAARYCDYLV-ALRGGEMIAQGTPAELMR 237 (265)
T ss_pred eCCHHHHHHhCCEEE-EEECCeEEEecCHHHhcC
Confidence 99 56778999996 599999999998877654
No 145
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-36 Score=301.19 Aligned_cols=195 Identities=15% Similarity=0.211 Sum_probs=159.1
Q ss_pred cceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEee
Q 018083 90 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY 169 (361)
Q Consensus 90 nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 169 (361)
||+++|++. . + ++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.... .
T Consensus 4 ~l~~~~~~~--~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~--~-- 66 (354)
T TIGR02142 4 RFSKRLGDF--S-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSR--K-- 66 (354)
T ss_pred EEEEEECCE--E-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCc--c--
Confidence 789999752 2 4 5999999999999999999999999999999999 99999999998764100 0
Q ss_pred eecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEE
Q 018083 170 TIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 248 (361)
Q Consensus 170 ~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv 248 (361)
.......+..+++++|++.+++. ++.+|+.++... ......++++.++++.++|.+
T Consensus 67 -------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~gL~~------------- 123 (354)
T TIGR02142 67 -------GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKR---ARPSERRISFERVIELLGIGH------------- 123 (354)
T ss_pred -------ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhc---cChhHHHHHHHHHHHHcCChh-------------
Confidence 00112234568899999988876 999999886542 122334556788999999987
Q ss_pred echhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccccccc
Q 018083 249 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLT 300 (361)
Q Consensus 249 ~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~a 300 (361)
++++++.+||||||||++||||| ||||++||. ++|||++|| +++..+|
T Consensus 124 ----~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 124 ----LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred ----HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 45899999999999999999999 999999753 789999999 5677899
Q ss_pred chhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 301 DRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 301 Dri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
|+++ +|++|++++.|++++++..|...+
T Consensus 200 d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 200 DRVV-VLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CEEE-EEeCCEEEEECCHHHHhcCcCccc
Confidence 9996 599999999999999988877654
No 146
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-37 Score=290.61 Aligned_cols=215 Identities=19% Similarity=0.206 Sum_probs=164.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 17 ~~~~l~~~nl~~~~~~~---~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGKK---EA---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECCe---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 34579999999999652 45 6669999999999999999999999999999999961100047999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 91 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i---- 153 (267)
T PRK14237 91 RK-------------EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV---- 153 (267)
T ss_pred cc-------------cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh----
Confidence 10 0112233556888999988777799999987643211112233456677788888885421
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+|||||+||++||||| |||+++||. +.|||++|| +.
T Consensus 154 ---------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 224 (267)
T PRK14237 154 ---------KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ 224 (267)
T ss_pred ---------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 0145889999999999999999999 999999753 789999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+..+||+++ +|++|++++.|++++++..+....
T Consensus 225 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~ 257 (267)
T PRK14237 225 AARASDYTA-FFYLGDLIEYDKTRNIFTNPKLQS 257 (267)
T ss_pred HHHhcCEEE-EEECCEEEEeCCHHHHhcCCCcHH
Confidence 778999996 599999999999999887665443
No 147
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-37 Score=286.80 Aligned_cols=214 Identities=21% Similarity=0.210 Sum_probs=161.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~- 74 (249)
T PRK14253 2 NKFNIENLDLFYGEN---QA---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG- 74 (249)
T ss_pred CeEEEeccEEEECCe---ee---eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc-
Confidence 578999999999752 45 66699999999999999999999999999999999811001258999999977530
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 75 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 135 (249)
T PRK14253 75 -------------NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV------ 135 (249)
T ss_pred -------------ccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh------
Confidence 0111233456788999887776788899986543211111223345566777778875421
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++++.+||||||||++||||| ||||++||. +.|||++|| +.+.
T Consensus 136 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 208 (249)
T PRK14253 136 -------KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQAR 208 (249)
T ss_pred -------hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHH
Confidence 0135788999999999999999999 999999753 689999999 5678
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+|||++ +|++|+++..|+++++...+.+++++
T Consensus 209 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 241 (249)
T PRK14253 209 RISDRTA-FFLMGELVEHDDTQVIFSNPKDDRTQ 241 (249)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHHcCCCChHHH
Confidence 8999996 59999999999998887766655543
No 148
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=8.8e-37 Score=279.81 Aligned_cols=186 Identities=17% Similarity=0.181 Sum_probs=147.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~-- 68 (214)
T cd03292 1 IEFINVTKTYPNGT--AA---LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDL-- 68 (214)
T ss_pred CEEEEEEEEeCCCc--ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccC--
Confidence 46899999996432 35 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. .......+..+++++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 69 ------~----~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 128 (214)
T cd03292 69 ------R----GRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSH--------- 128 (214)
T ss_pred ------C----HHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 0 00111234568889999888875 8999998764321 1222344567788899999977
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +.+.
T Consensus 129 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 129 --------KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred --------HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhh
Q 018083 298 SLTDRARIRTYLGEL 312 (361)
Q Consensus 298 ~~aDri~vvl~~G~i 312 (361)
.+||+++ +|++|++
T Consensus 201 ~~~d~i~-~l~~G~~ 214 (214)
T cd03292 201 TTRHRVI-ALERGKL 214 (214)
T ss_pred HhCCEEE-EEeCCcC
Confidence 8899996 5998874
No 149
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.9e-36 Score=313.02 Aligned_cols=194 Identities=15% Similarity=0.193 Sum_probs=159.0
Q ss_pred hhhhHHHHHHHHhHHHHHhh----------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 62 RRRDAVFREVLQSYDQLRTR----------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~----------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
+....|+.++++.+++.+.. ....|+++||+|+|+++. ++ |+|+||+|++|++++|+||||||||
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~--~v---L~~isl~i~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 301 RAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP--PV---LDGVSLDLPPGERVAILGPSGSGKS 375 (529)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC--ce---eecceEEEcCCCEEEEECCCCCCHH
Confidence 33455889988655432110 112589999999997643 35 6669999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
||+++|+|+++ |++|+|.+||.++. .+ ..+.|..+++|+|++.+|+.|+.+||.++..
T Consensus 376 TLl~lL~g~~~-----p~~G~I~i~g~~i~---------------~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~- 433 (529)
T TIGR02868 376 TLLMLLTGLLD-----PLQGEVTLDGVSVS---------------SL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP- 433 (529)
T ss_pred HHHHHHhcCCC-----CCCcEEEECCEEhh---------------hH-HHHHHhheEEEccCcccccccHHHHHhccCC-
Confidence 99999999999 99999999999987 56 6778889999999999999999999997643
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+..++++.++++.+++++.+.+.++.+.+.|++ ....||||||||++||||| ||||++|
T Consensus 434 ------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige------~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaL 501 (529)
T TIGR02868 434 ------DATDEELWAALERVGLADWLRSLPDGLDTVLGE------GGARLSGGERQRLALARALLADAPILLLDEPTEHL 501 (529)
T ss_pred ------CCCHHHHHHHHHHcCCHHHHHhCcccccchhcc------ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 334567888899999988766666777775554 3457999999999999999 9999997
Q ss_pred cC---------------CccEEEEEcC
Q 018083 283 RD---------------DKPVVVVTHG 294 (361)
Q Consensus 283 ~~---------------g~tvIiiTH~ 294 (361)
|. ++|+|+|||.
T Consensus 502 D~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 502 DAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 63 7999999994
No 150
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.6e-37 Score=325.37 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=178.0
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
+....|+.++++.+++.... ....|+++|++++|++... ++ |+++||+|++|+.++|+||||||||||+
T Consensus 425 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~vaivG~sGsGKSTL~ 500 (694)
T TIGR01846 425 GIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EV---LSNLNLDIKPGEFIGIVGPSGSGKSTLT 500 (694)
T ss_pred HHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEECCCCEEEEECCCCCCHHHHH
Confidence 33455889988755432211 1235899999999975432 45 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ |++|+|.+||.++. .+...+.|..+++|+|++.+|+.++.+|+.++..
T Consensus 501 ~ll~g~~~-----p~~G~I~idg~~i~---------------~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~---- 556 (694)
T TIGR01846 501 KLLQRLYT-----PQHGQVLVDGVDLA---------------IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP---- 556 (694)
T ss_pred HHHhcCCC-----CCCceEEECCEehh---------------hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC----
Confidence 99999999 99999999999886 4566677888999999999999999999986432
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
....+++.++++.+++.+.+.+.++.+.+.++ +....||||||||++||||| ||||++||.
T Consensus 557 ---~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~------~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~ 627 (694)
T TIGR01846 557 ---GAPFEHVIHAAKLAGAHDFISELPQGYNTEVG------EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE 627 (694)
T ss_pred ---CCCHHHHHHHHHHcChHHHHHhCcCccCcEec------CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 23345666777888776644333444444333 34568999999999999999 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| ......||+|+ +|++|++++.|++++++...
T Consensus 628 ~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii-~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 628 SEALIMRNMREICRGRTVIIIAHRLSTVRACDRII-VLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEE-EEeCCEEEEeCCHHHHHHcC
Confidence 799999999 44556799995 69999999999999987653
No 151
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=286.43 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=155.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 2 SIQLNGINCFYGAH---QA---LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred EEEEEeeEEEECCe---ee---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccc
Confidence 57899999999753 45 666999999999999999999999999999999999 99999999998752000
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
. .. .......+..++|++|++.+++. ++.+|+.+...........+..+++.++++.+++..
T Consensus 71 ---~--~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------- 133 (242)
T PRK11124 71 ---T--PS----DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-------- 133 (242)
T ss_pred ---c--cc----hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh--------
Confidence 0 00 01112334567889999887765 888998643211111222334566788899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
++++.+.+||||||||++||||| ||||++||. ++|+|++|| ..+
T Consensus 134 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 134 ---------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA 204 (242)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999753 799999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCcccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
..+||+++ +|++|+++..|+++++
T Consensus 205 ~~~~d~i~-~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 205 RKTASRVV-YMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCEEE-EEECCEEEEeCCHHHh
Confidence 68899996 5999999999988765
No 152
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-37 Score=289.13 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=159.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++...
T Consensus 4 ~l~i~~v~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~- 76 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HA---VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP- 76 (258)
T ss_pred cEEEeeEEEEECCE---ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc-
Confidence 68999999999753 45 666999999999999999999999999999999997211112799999999876310
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++. ++.+|+.++............++++.++++.+++.+.+
T Consensus 77 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 138 (258)
T PRK14241 77 ------------GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------ 138 (258)
T ss_pred ------------ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------
Confidence 01112234568889998877775 88899876543211112234456677888888885311
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 139 -------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~ 211 (258)
T PRK14241 139 -------KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAA 211 (258)
T ss_pred -------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 0135788999999999999999999 999999753 689999999 4677
Q ss_pred cccchhhHhhh------hhhhcCCCCccccccCCCCC
Q 018083 298 SLTDRARIRTY------LGELLGIPPAKQIFDIPESS 328 (361)
Q Consensus 298 ~~aDri~vvl~------~G~iv~~g~~~~i~~~~~~~ 328 (361)
.+|||++ +|+ +|++++.|++++++..+...
T Consensus 212 ~~~d~i~-~l~~~~~~~~g~i~~~~~~~~~~~~~~~~ 247 (258)
T PRK14241 212 RVSDQTA-FFNLEATGKPGRLVEIDDTEKIFSNPTQK 247 (258)
T ss_pred HhCCEEE-EEecccCCCCceEEecCCHHHHHhCcCcH
Confidence 8999996 485 79999999999887765443
No 153
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=287.82 Aligned_cols=214 Identities=16% Similarity=0.207 Sum_probs=161.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~---~~---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGNY---EA---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECCe---ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 478999999999753 45 666999999999999999999999999999999986100003799999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++............++++.++++.+++....
T Consensus 77 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 137 (251)
T PRK14251 77 -------------KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET------ 137 (251)
T ss_pred -------------cchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch------
Confidence 0111223456788888887776688899876543111111223345667788888884210
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+||||||||++||||| |||+++||. +.|||++|| .++.
T Consensus 138 -------~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 210 (251)
T PRK14251 138 -------KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210 (251)
T ss_pred -------HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence 0034788999999999999999999 999999753 789999999 5677
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
.+|||++ +|++|+++..|++++++..+.+..+
T Consensus 211 ~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~ 242 (251)
T PRK14251 211 RISDQTA-FLMNGDLIEAGPTEEMFIAPKKQIT 242 (251)
T ss_pred hhcCEEE-EEECCEEEEeCCHHHHHhCCCCHHH
Confidence 8999996 5999999999999998877765543
No 154
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=286.21 Aligned_cols=197 Identities=14% Similarity=0.196 Sum_probs=155.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (255)
T PRK11300 4 PLLSVSGLMMRFGGL---LA---VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEG- 71 (255)
T ss_pred ceEEEeeEEEEECCE---EE---EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCC-
Confidence 479999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEE---------ec---CC--Chhhhhhhccc
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVI---------RR---SD--SSSLRNRMRCK 227 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---------~~---~~--~~~~~~~v~~~ 227 (361)
..... .+..++|++|++.+++. ++.+|+.++.... .. .. ..+..+++.++
T Consensus 72 --------------~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (255)
T PRK11300 72 --------------LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137 (255)
T ss_pred --------------CCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHH
Confidence 11111 12346778898887776 8889988653210 00 00 11223456778
Q ss_pred ccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------------
Q 018083 228 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 284 (361)
Q Consensus 228 l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------- 284 (361)
++.+++.+ ++++++.+||||||||++||||| ||||++||.
T Consensus 138 l~~~gl~~-----------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 200 (255)
T PRK11300 138 LERVGLLE-----------------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR 200 (255)
T ss_pred HHhCChhh-----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 88999976 45899999999999999999999 999999652
Q ss_pred ---CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|||++|| +++..+||+++ +|++|+++..|++++++..
T Consensus 201 ~~~~~tii~~sH~~~~~~~~~d~i~-~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 201 NEHNVTVLLIEHDMKLVMGISDRIY-VVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred hhcCCEEEEEeCCHHHHHHhCCEEE-EEECCeEEecCCHHHHhhC
Confidence 789999999 56778999996 5999999999998877653
No 155
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=289.87 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=159.5
Q ss_pred ccccccccceeeecCcc---eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 83 GSLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~---~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
.++|+++|++++|++.. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~v---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~ 73 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLA---LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLD 73 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe
Confidence 35799999999996421 1246 666999999999999999999999999999999999 999999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
+.. .-.....+..+++++|++. ++..++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 74 i~~--------------~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-- 136 (280)
T PRK13633 74 TSD--------------EENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYE-- 136 (280)
T ss_pred ccc--------------cccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHh--
Confidence 641 0011233556889999874 34447888988764321 2233455667888999999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
++++++.+||||||||++||||| |||+++||. |.|||++
T Consensus 137 ---------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv 201 (280)
T PRK13633 137 ---------------YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 201 (280)
T ss_pred ---------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45899999999999999999999 999999653 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|| +.+.. ||+++ +|++|+++..|++++++..
T Consensus 202 tH~~~~~~~-~d~v~-~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 202 THYMEEAVE-ADRII-VMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred ecChHHHhc-CCEEE-EEECCEEEEecCHHHHhcC
Confidence 99 45544 99996 5999999999999888764
No 156
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=281.79 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=156.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+.. ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 65 (232)
T PRK10771 1 MLKLTDITWLYHHL--------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTT-- 65 (232)
T ss_pred CeEEEEEEEEECCc--------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCc--
Confidence 47899999999642 235999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.. ..+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 66 -------------~~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 121 (232)
T PRK10771 66 -------------TP--PSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LKLNAAQREKLHAIARQMGIED-------- 121 (232)
T ss_pred -------------CC--hhhccEEEEecccccccCCcHHHHHhcccccc-cCCCHHHHHHHHHHHHHcCcHH--------
Confidence 10 012457888999887775 8999998754211 1112234567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| |||+++||. ++|||++|| ++
T Consensus 122 ---------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 122 ---------LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred ---------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 45899999999999999999999 999999753 689999999 45
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+..+||+++ +|++|++++.|++++++..+
T Consensus 193 ~~~~~d~i~-~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 193 AARIAPRSL-VVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCh
Confidence 678999996 59999999999988887654
No 157
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.1e-36 Score=278.51 Aligned_cols=180 Identities=13% Similarity=0.150 Sum_probs=147.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (208)
T cd03268 1 LKTNDLTKTYGKK---RV---LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQK--- 66 (208)
T ss_pred CEEEEEEEEECCe---Ee---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccc---
Confidence 5789999999652 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. .+.+..+++++|++.+++. ++.+|+.++..... ...+++.++++.+++.+
T Consensus 67 ------------~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~--------- 118 (208)
T cd03268 67 ------------N--IEALRRIGALIEAPGFYPNLTARENLRLLARLLG-----IRKKRIDEVLDVVGLKD--------- 118 (208)
T ss_pred ------------h--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHH---------
Confidence 1 1234557888998877765 89999876543111 12456777889999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ++|+|++|| +++.
T Consensus 119 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 190 (208)
T cd03268 119 --------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ 190 (208)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhcCCC
Q 018083 298 SLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g 316 (361)
.+||+++ +|++|++++.|
T Consensus 191 ~~~d~v~-~l~~g~i~~~g 208 (208)
T cd03268 191 KVADRIG-IINKGKLIEEG 208 (208)
T ss_pred HhcCEEE-EEECCEEEecC
Confidence 8899996 59999987654
No 158
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=265.70 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=174.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++++++.|+.. ++ |.||+|+-++||++.++||||+|||||++.|+-+.- |.+|+..+.|...+
T Consensus 3 irv~~in~~yg~~---q~---lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd---- 67 (242)
T COG4161 3 IQLNGINCFYGAH---QA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFD---- 67 (242)
T ss_pred eEEcccccccccc---hh---eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccc----
Confidence 7899999999874 56 777999999999999999999999999999999888 99999999886543
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
+......-...++|..+|+|||...+.|. ++.+|+........+..+++.+.++.++|+.+.+.+
T Consensus 68 -----~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~--------- 133 (242)
T COG4161 68 -----FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP--------- 133 (242)
T ss_pred -----cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc---------
Confidence 11111123455778889999999999999 999999877665556777888889999999999998
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
+++++|-.|||||+||++||||| ||||++||+ |.|-+++|| +.+.
T Consensus 134 --------~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~ 205 (242)
T COG4161 134 --------YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred --------ccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHH
Confidence 56999999999999999999998 999999875 899999999 6778
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+.|.+++ .|++|+|++.|++. -|.+|..
T Consensus 206 k~as~vv-yme~g~ive~g~a~-~ft~p~t 233 (242)
T COG4161 206 KTASRVV-YMENGHIVEQGDAS-CFTEPQT 233 (242)
T ss_pred hhhhheE-eeecCeeEeecchh-hccCccH
Confidence 9999996 59999999999985 4566654
No 159
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-37 Score=321.60 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=170.1
Q ss_pred hccccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 82 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++|+++||++.|+... ..++ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..+
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~---l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~ 80 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAA---VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLL 80 (623)
T ss_pred CCceEEEeceEEEecCCCCceeE---EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEe
Confidence 456899999999996321 1356 566999999999999999999999999999999999 9999999998754
Q ss_pred CcceEeEeeeecCCCcceeeeecC-CCCcccccch--HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNI--NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
...- .....+.. .........+ ..+++|+|++ .+++. ++.+|+.+++..+...+..+.++++.++++.+||.+.
T Consensus 81 ~~~~-~~~~~~~~-~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRS-RQVIELSE-QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred cccc-cccccccc-CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 2100 00000000 0000111222 3689999987 45554 8999998875422122334556788899999999641
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
...+++++++||||||||++||||| ||||++||. |+|||+
T Consensus 159 --------------~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~ 224 (623)
T PRK10261 159 --------------QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF 224 (623)
T ss_pred --------------hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0145899999999999999999999 999999753 789999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
||| +.+..+||||+ +|++|++++.|++++++..|.+.++..++
T Consensus 225 itHdl~~~~~~adri~-vl~~G~i~~~g~~~~~~~~~~~~~~~~l~ 269 (623)
T PRK10261 225 ITHDMGVVAEIADRVL-VMYQGEAVETGSVEQIFHAPQHPYTRALL 269 (623)
T ss_pred EcCCHHHHHHhCCEEE-EeeCCeecccCCHHHhhcCCCChhhhhhh
Confidence 999 57789999996 59999999999999998877766654444
No 160
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=287.28 Aligned_cols=211 Identities=17% Similarity=0.219 Sum_probs=159.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 2 PIIEIENFSAYYGEK---KA---VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred ceEEEEeeEEEeCCc---ee---EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 579999999999753 45 666999999999999999999999999999999987110012899999999776410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++............++++.++++.+++...+
T Consensus 76 -------------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 136 (250)
T PRK14262 76 -------------QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV------ 136 (250)
T ss_pred -------------hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh------
Confidence 0111223456788899887776788899886542111111223445667788888886421
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+|||||+||++||||| ||||++||. ++|||++|| +.+.
T Consensus 137 -------~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~ 209 (250)
T PRK14262 137 -------KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209 (250)
T ss_pred -------HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 0135888999999999999999999 999999753 789999999 4577
Q ss_pred cccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
.+||+++ +|++|+++..|+++++...+.+
T Consensus 210 ~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14262 210 RIADYIA-FMYRGELIEYGPTREIVERPKN 238 (250)
T ss_pred HhCCEEE-EEECCEEEEecCHHHHHhCCCC
Confidence 8999996 5999999999999888765543
No 161
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.6e-36 Score=282.95 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=153.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~-- 67 (236)
T TIGR03864 1 ALEVAGLSFAYGAR---RA---LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRR-- 67 (236)
T ss_pred CEEEEeeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
... ..+..++|++|++.+++. ++.+|+.+..... ........+++.++++.+++.+
T Consensus 68 -------------~~~-~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 124 (236)
T TIGR03864 68 -------------APR-AALARLGVVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAE-------- 124 (236)
T ss_pred -------------CCh-hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 010 112357788888766544 8888887643211 1122334556778899999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++.+.+||||||||++||||| |||+++||. +.|||++|| ++
T Consensus 125 ---------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 125 ---------RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 45889999999999999999999 999999642 789999999 45
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+. .||+++ +|++|+++..+++++++..
T Consensus 196 ~~-~~d~i~-~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 196 IE-ADDRLV-VLHRGRVLADGAAAELRGA 222 (236)
T ss_pred Hh-hCCEEE-EEeCCeEEEeCCHHHHHHH
Confidence 54 599996 5999999999988877654
No 162
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.4e-36 Score=278.26 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=147.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (213)
T cd03262 1 IEIKNLHKSFGDF---HV---LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDD-- 67 (213)
T ss_pred CEEEEEEEEECCe---Ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc--
Confidence 5789999999753 45 666999999999999999999999999999999999 9999999999876310
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.+++. ++.+|+.++.......+.....+++.++++.+++.+
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 127 (213)
T cd03262 68 -----------KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD--------- 127 (213)
T ss_pred -----------chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh---------
Confidence 01112334568889999887765 889998775321111222334566788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+|||||+||++||||| ||||++||. ++|||++|| +++.
T Consensus 128 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 128 --------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred --------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45899999999999999999999 999999753 789999999 5677
Q ss_pred cccchhhHhhhhhhh
Q 018083 298 SLTDRARIRTYLGEL 312 (361)
Q Consensus 298 ~~aDri~vvl~~G~i 312 (361)
.+||+++ +|++|++
T Consensus 200 ~~~d~i~-~l~~g~i 213 (213)
T cd03262 200 EVADRVI-FMDDGRI 213 (213)
T ss_pred HhCCEEE-EEeCCcC
Confidence 8999996 5998874
No 163
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=286.82 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=155.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~--- 67 (255)
T PRK11231 2 TLRTENLTVGYGTK---RI---LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPIS--- 67 (255)
T ss_pred EEEEEeEEEEECCE---EE---EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhH---
Confidence 58999999999753 45 666999999999999999999999999999999999 99999999997654
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE---ecCCChhhhhhhcccccccCCCcceeEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.....+.+..++|++|+..+++. ++.+|+.++.... .........+++.++++.+++.+
T Consensus 68 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 130 (255)
T PRK11231 68 ------------MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH----- 130 (255)
T ss_pred ------------HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----
Confidence 11112234457888888776655 7889887653211 01112334456778899999976
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++++.+|||||+||++||||| ||||++||. ++|||++||
T Consensus 131 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 131 ------------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred ------------HHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+++..+||+++ +|++|+++..|++++++.
T Consensus 199 ~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 199 NQASRYCDHLV-VLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCEEE-EEECCeEEEEcCHHHhcC
Confidence 56778999996 599999999888877654
No 164
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2e-36 Score=279.82 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=144.5
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA---LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceee---ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccc
Confidence 478999999996531 0135 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhh-hcccccccCCCcceeE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNR-MRCKAHKIGCEPSVIR 239 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~-v~~~l~~~gl~~~~~~ 239 (361)
. .......+..++|++|++. +++ .++.+|+.++.............++ +.++++.+++...
T Consensus 73 --------~----~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--- 137 (228)
T cd03257 73 --------S----RRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE--- 137 (228)
T ss_pred --------c----hhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh---
Confidence 0 0001233456888899873 333 3788888765332111111111122 2467888888521
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 -------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 204 (228)
T cd03257 138 -------------VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204 (228)
T ss_pred -------------HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35889999999999999999999 999999642 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCC
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g 316 (361)
+.+..+||+++ +|++|+++..|
T Consensus 205 ~~~~~~~~~d~i~-~l~~G~i~~~g 228 (228)
T cd03257 205 DLGVVAKIADRVA-VMYAGKIVEEG 228 (228)
T ss_pred CHHHHHHhcCeEE-EEeCCEEEecC
Confidence 46667899996 59999987654
No 165
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=279.01 Aligned_cols=184 Identities=14% Similarity=0.105 Sum_probs=148.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~---~~---l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~---- 64 (211)
T cd03264 1 LQLENLTKRYGKK---RA---LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVL---- 64 (211)
T ss_pred CEEEEEEEEECCE---EE---EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccc----
Confidence 5789999999653 45 66699999999 999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
... ...+..+++++|++.+++. ++.+|+.+..... ..+..+..+++.++++.+++.+
T Consensus 65 -----------~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (211)
T cd03264 65 -----------KQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGD--------- 122 (211)
T ss_pred -----------cch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHH---------
Confidence 111 2335567889999887776 8889987643211 1222334567788899999986
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +.+..
T Consensus 123 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 123 --------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred --------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 45889999999999999999999 999999753 789999999 45668
Q ss_pred ccchhhHhhhhhhhcCCC
Q 018083 299 LTDRARIRTYLGELLGIP 316 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g 316 (361)
+|||++ +|++|++++.|
T Consensus 195 ~~d~i~-~l~~g~i~~~g 211 (211)
T cd03264 195 LCNQVA-VLNKGKLVFEG 211 (211)
T ss_pred hCCEEE-EEECCEEEecC
Confidence 899996 59999987654
No 166
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=286.30 Aligned_cols=181 Identities=13% Similarity=0.149 Sum_probs=150.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~~---~i---l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGER---TV---LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLA- 77 (257)
T ss_pred CCcEEEEEEEEEECCc---ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHH-
Confidence 4579999999999753 45 666999999999999999999999999999999999 99999999886542
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..+..++|++|++.+++. ++.+|+.++.. ....+++.++++.+++.+
T Consensus 78 -------------------~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~------ 125 (257)
T PRK11247 78 -------------------EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------GQWRDAALQALAAVGLAD------ 125 (257)
T ss_pred -------------------HhhCceEEEecCccCCCCCcHHHHHHhccc-------chHHHHHHHHHHHcCChh------
Confidence 123457788888877764 89999886532 112456778899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 126 -----------~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 126 -----------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45889999999999999999999 999999752 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCcc
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
..+..+||+++ +|++|+++..++.+
T Consensus 195 ~~~~~~~d~i~-~l~~G~i~~~~~~~ 219 (257)
T PRK11247 195 SEAVAMADRVL-LIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHhCCEEE-EEECCEEEeecccc
Confidence 45678999996 59999999887764
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=287.65 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=157.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~l~i~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~- 74 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA-SFT---LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAIT- 74 (269)
T ss_pred CceEEEEEEEEEcCCCC-Ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC-
Confidence 45799999999997532 135 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.......+..++|++|++. +++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 75 --------------~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 134 (269)
T PRK13648 75 --------------DDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLE----- 134 (269)
T ss_pred --------------cCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1122234556888999874 4443 6778887654311 1122334556778899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||+|||||++||||| ||||++||. ++|||++||
T Consensus 135 ------------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 135 ------------RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred ------------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999653 689999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+. .|||++ +|++|++++.|+++++...+
T Consensus 203 ~~~~~-~~d~i~-~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 203 LSEAM-EADHVI-VMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred chHHh-cCCEEE-EEECCEEEEecCHHHHhcCH
Confidence 4555 499996 59999999999998887653
No 168
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=9.5e-37 Score=317.92 Aligned_cols=229 Identities=10% Similarity=0.121 Sum_probs=175.7
Q ss_pred hhhhhhhHHHHHHHHhHHHHHh---------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCC
Q 018083 59 VDQRRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 129 (361)
Q Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~---------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSG 129 (361)
...+....|+.++++.+++... .....|+++|++++|+......+ |+++||+|++||.++|+||||||
T Consensus 302 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i---L~~inl~i~~Ge~i~IvG~sGsG 378 (576)
T TIGR02204 302 QRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA---LDGLNLTVRPGETVALVGPSGAG 378 (576)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc---ccceeEEecCCCEEEEECCCCCC
Confidence 3444455688888865433110 01235899999999975321235 66699999999999999999999
Q ss_pred cchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccce
Q 018083 130 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 209 (361)
Q Consensus 130 KSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~ 209 (361)
||||+++|+|+++ |++|+|.++|.++. .+...+.+..++|++|++.+|..++.+|+.++.
T Consensus 379 KSTLlklL~gl~~-----p~~G~I~i~g~~i~---------------~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~ 438 (576)
T TIGR02204 379 KSTLFQLLLRFYD-----PQSGRILLDGVDLR---------------QLDPAELRARMALVPQDPVLFAASVMENIRYGR 438 (576)
T ss_pred HHHHHHHHHhccC-----CCCCEEEECCEEHH---------------hcCHHHHHHhceEEccCCccccccHHHHHhcCC
Confidence 9999999999999 99999999998876 345556677899999999999999999998754
Q ss_pred eEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCce
Q 018083 210 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 280 (361)
Q Consensus 210 ~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~ 280 (361)
. +...+++.++++.+++.+.+.+.++.+.+.+ ......||||||||++||||+ ||||+
T Consensus 439 ~-------~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i------~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts 505 (576)
T TIGR02204 439 P-------DATDEEVEAAARAAHAHEFISALPEGYDTYL------GERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505 (576)
T ss_pred C-------CCCHHHHHHHHHHcCcHHHHHhCCCCCCcee------CCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccc
Confidence 3 2234567777888887654332233333322 233557999999999999999 99999
Q ss_pred eecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 281 SFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 281 ~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+ ++|+|+||| ....+.||+++ ++++|++++.|++++++..
T Consensus 506 ~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi-~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIV-VMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEeeecHHHHHHc
Confidence 9763 799999999 56667899995 6999999999999887553
No 169
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1e-36 Score=294.96 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=160.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.++++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~~---l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~-- 68 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ---NA---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQ-- 68 (301)
T ss_pred EEEEEEEEEEECCE---EE---EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc--
Confidence 47899999999753 46 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.....+..++|++|++.+++. ++.+|+.+..... ..+..+..+++.++++.++|.+
T Consensus 69 --------------~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 125 (301)
T TIGR03522 69 --------------NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGLRP-------- 125 (301)
T ss_pred --------------ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch--------
Confidence 111335568899999887776 8999987643211 1223444567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
.+++++..||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 126 ---------EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred ---------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 5788
Q ss_pred cccchhhHhhhhhhhcCCCCcccccc
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.+|||++ +|++|+++..|+++++..
T Consensus 197 ~~~d~i~-~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 197 AICDRVI-IINKGKIVADKKLDELSA 221 (301)
T ss_pred HhCCEEE-EEECCEEEEeCCHHHHHH
Confidence 9999996 599999999999988754
No 170
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-36 Score=278.01 Aligned_cols=182 Identities=14% Similarity=0.148 Sum_probs=147.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (210)
T cd03269 1 LEVENVTKRFGRV---TA---LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDI--- 66 (210)
T ss_pred CEEEEEEEEECCE---EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchhH---
Confidence 5789999999752 45 666999999999999999999999999999999999 999999999987640
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
..+..+++++|++.+++. ++.+|+.+..... ........+++.++++.+++.+
T Consensus 67 ----------------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 120 (210)
T cd03269 67 ----------------AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELSE--------- 120 (210)
T ss_pred ----------------HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCChH---------
Confidence 123456778888777665 8888887643211 1222344567888899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| +++.
T Consensus 121 --------~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 121 --------YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred --------HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 45888999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhcCCC
Q 018083 298 SLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g 316 (361)
.+||+++ +|++|++++.|
T Consensus 193 ~~~d~i~-~l~~g~i~~~~ 210 (210)
T cd03269 193 ELCDRVL-LLNKGRAVLYG 210 (210)
T ss_pred HhhhEEE-EEeCCEEEecC
Confidence 8899996 59999987653
No 171
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=287.88 Aligned_cols=199 Identities=14% Similarity=0.211 Sum_probs=158.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++|+++.|+++. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~l~~~nl~~~~~~~~-~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~- 74 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE-NNA---LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITIS- 74 (271)
T ss_pred ceEEEEEeEEEEcCCCC-ccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC-
Confidence 35799999999996322 245 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.......+..++|++|++. .+. .++.+|+.++.... .......++++.++++.+++.+
T Consensus 75 --------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 134 (271)
T PRK13632 75 --------------KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMED----- 134 (271)
T ss_pred --------------cCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHH-----
Confidence 1111233556889999974 343 48999998754311 1223344556788899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| |||+++||. ++|||++||
T Consensus 135 ------------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 135 ------------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 45899999999999999999999 999999753 489999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+ ..||+++ +|++|+++..|++++++..+
T Consensus 203 ~~~~-~~~d~v~-~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 203 MDEA-ILADKVI-VFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred hhHH-hhCCEEE-EEECCEEEEecCHHHHhcCH
Confidence 344 4799996 59999999999888876654
No 172
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=288.13 Aligned_cols=215 Identities=18% Similarity=0.199 Sum_probs=162.9
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 10 ~~~~l~i~nl~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 10 KNIIISLQNVTISYGTF---EA---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CCceEEEEeEEEEECCE---EE---EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 34579999999999753 45 5669999999999999999999999999999999861110148999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .....+.+..++|++|++.+++.++.+|+.++..... .. ...++++.++++.+++...+
T Consensus 84 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l---- 144 (269)
T PRK14259 84 DP-------------RVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARING-YT-GDMDELVERSLRKAAVWDEC---- 144 (269)
T ss_pred cc-------------cCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcC-Cc-HHHHHHHHHHHHHhCCcchh----
Confidence 00 0111233456889999988777799999987653211 11 22345566677777764211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 145 ---------~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 215 (269)
T PRK14259 145 ---------KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ 215 (269)
T ss_pred ---------hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 689999999 57
Q ss_pred cccccchhhHhhhh-----------hhhcCCCCccccccCCCCCCCC
Q 018083 296 LLSLTDRARIRTYL-----------GELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 296 ~~~~aDri~vvl~~-----------G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
+..+||+++ +|++ |++++.|++++++..+.++++.
T Consensus 216 ~~~~~d~i~-~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 261 (269)
T PRK14259 216 AVRVSDMTA-FFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQ 261 (269)
T ss_pred HHHhcCEEE-EEeccccccccccccceEEEeCCHHHHHhCcCChHHH
Confidence 789999996 5986 6689999999999887765543
No 173
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-36 Score=316.40 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=174.3
Q ss_pred hhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhh
Q 018083 64 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
...|+.++++.+++.... ..+.+++++++++|+... ..+ |+++||+|++|++++|+||||||||||+++|
T Consensus 286 a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~-~~~---l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll 361 (569)
T PRK10789 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTD-HPA---LENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361 (569)
T ss_pred HHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCC-Ccc---ccCeeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 344888888654432111 123589999999997532 245 5669999999999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC
Q 018083 138 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 217 (361)
Q Consensus 138 ~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~ 217 (361)
+|+++ |++|+|.++|+++. .+...+.+..+++++|++.+|..++.+|+.++..
T Consensus 362 ~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------- 414 (569)
T PRK10789 362 QRHFD-----VSEGDIRFHDIPLT---------------KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP------- 414 (569)
T ss_pred hcccC-----CCCCEEEECCEEHh---------------hCCHHHHHhheEEEccCCeeccccHHHHHhcCCC-------
Confidence 99999 99999999998875 3444566778999999999999999999987533
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---- 284 (361)
....+++.++++.+++.+.+.+.++.+.+.+ .+....||||||||++||||| ||||++||.
T Consensus 415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~------~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~ 488 (569)
T PRK10789 415 DATQQEIEHVARLASVHDDILRLPQGYDTEV------GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH 488 (569)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCccccee------cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 1233456666777777654433344444433 334568999999999999999 999999763
Q ss_pred -----------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 -----------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| ......||+++ +|++|++++.|++++++...
T Consensus 489 ~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 489 QILHNLRQWGEGRTVIISAHRLSALTEASEIL-VMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHHHHhCCCEEEEEecchhHHHcCCEEE-EEeCCEEEEecCHHHHHHcC
Confidence 799999999 44556799995 69999999999999887643
No 174
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=285.60 Aligned_cols=216 Identities=20% Similarity=0.208 Sum_probs=162.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.+.....+++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGEK---HA---LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECCe---ee---eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 4579999999999753 45 66699999999999999999999999999999997511000248999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++.++.+|+.++............++.+.++++.+++.+.+
T Consensus 78 ~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 139 (253)
T PRK14261 78 S-------------GADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV----- 139 (253)
T ss_pred c-------------ccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-----
Confidence 0 0011233456888999987777799999987643211111223345667778888775311
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+||||||||++||||| |||+++||. ++|||++|| ..+
T Consensus 140 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~ 211 (253)
T PRK14261 140 --------KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA 211 (253)
T ss_pred --------HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH
Confidence 0034788999999999999999999 999999753 689999999 467
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
..+||+++ +|++|+++..|++++++..+.++.++
T Consensus 212 ~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 245 (253)
T PRK14261 212 ARVSDYTG-FMYLGKLIEFDKTTQIFENPHEELTE 245 (253)
T ss_pred HhhCCEEE-EEECCEEEEcCCHHHHHhCCCcHHHH
Confidence 78999996 59999999999999988776554443
No 175
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.8e-36 Score=275.88 Aligned_cols=179 Identities=16% Similarity=0.233 Sum_probs=141.9
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~----- 64 (213)
T cd03235 1 EVEDLTVSYGGH---PV---LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLE----- 64 (213)
T ss_pred CcccceeEECCE---Ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHH-----
Confidence 478999999752 45 666999999999999999999999999999999999 99999999997652
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHH---HHHHHHhccccceeEEec---CCChhhhhhhcccccccCCCcceeEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINM---IKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l---~~~ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
..+..++|++|++.+ +..++.+|+.++...... ......++++.++++.+++.+
T Consensus 65 ---------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 124 (213)
T cd03235 65 ---------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE----- 124 (213)
T ss_pred ---------------HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-----
Confidence 123457788888754 234888998875432110 112334567788899999976
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 125 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 125 ------------LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL 192 (213)
T ss_pred ------------HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45889999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhhhhhhcCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~ 315 (361)
+++..+||+++ +|++| +++.
T Consensus 193 ~~~~~~~d~i~-~l~~~-~~~~ 212 (213)
T cd03235 193 GLVLEYFDRVL-LLNRT-VVAS 212 (213)
T ss_pred HHHHHhcCEEE-EEcCc-Eeec
Confidence 46778999996 58875 5544
No 176
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-36 Score=275.43 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=146.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. ..++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~--- 64 (211)
T cd03298 1 VRLDKIRFSYGEQ--------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTA--- 64 (211)
T ss_pred CEEEeEEEEeCCE--------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCc---
Confidence 4689999999752 125999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.+++. ++.+|+.++...... .....++++.++++.+++.+
T Consensus 65 ------------~~--~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--------- 120 (211)
T cd03298 65 ------------AP--PADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAG--------- 120 (211)
T ss_pred ------------CC--HhHccEEEEecccccCCCCcHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHH---------
Confidence 11 113457889999888776 899999875431111 11234556788899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 121 --------~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 192 (211)
T cd03298 121 --------LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192 (211)
T ss_pred --------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 45889999999999999999999 999999653 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+|||++ +|++|++++.|
T Consensus 193 ~~~~d~i~-~l~~G~i~~~~ 211 (211)
T cd03298 193 KRLAQRVV-FLDNGRIAAQG 211 (211)
T ss_pred HhhhCEEE-EEECCEEeecC
Confidence 78999996 59999987653
No 177
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.2e-36 Score=282.65 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=156.8
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~i~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~- 68 (242)
T TIGR03411 1 PILYLEGLSVSFDGF---KA---LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTG- 68 (242)
T ss_pred CeEEEEeeEEEcCCe---EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCC-
Confidence 368999999999752 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhcccccccCCC
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~gl~ 234 (361)
....+ .+..+++++|++.+++. ++.+|+.++..... .......++++.++++.+++.
T Consensus 69 --------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (242)
T TIGR03411 69 --------------LPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA 134 (242)
T ss_pred --------------CCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc
Confidence 11111 12357888998888776 88899876532110 011123456778889999998
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVV 290 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIi 290 (361)
+ .+++++.+|||||+||++||||| ||||++||. ++|||+
T Consensus 135 ~-----------------~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~ 197 (242)
T TIGR03411 135 D-----------------EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVV 197 (242)
T ss_pred h-----------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 7 35889999999999999999999 999999753 689999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+|| +++..+||+++ +|++|+++..|++++++.
T Consensus 198 ~sH~~~~~~~~~d~i~-~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 198 VEHDMEFVRSIADKVT-VLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred EECCHHHHHHhCCEEE-EEECCeEEeeCCHHHHhc
Confidence 999 56778999996 599999999998887754
No 178
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=289.41 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=157.6
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
|+++|+++.|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA---LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCccccce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc
Confidence 78999999997421 0135 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. ........+..++|++|++ .++..++.+|+.++.... ........+++.++++.+++.+.
T Consensus 75 ~-----------~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~----- 137 (280)
T PRK13649 75 S-----------KNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISES----- 137 (280)
T ss_pred c-----------cccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh-----
Confidence 0 0011122345688899986 355558899988654311 12233445567788889999742
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 138 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 138 -----------LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 34888999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++..+||+++ +|++|+++..|++++++..+
T Consensus 207 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 236 (280)
T PRK13649 207 DVANYADFVY-VLEKGKLVLSGKPKDIFQDV 236 (280)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 6778999996 59999999999988886643
No 179
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-36 Score=344.82 Aligned_cols=225 Identities=12% Similarity=0.087 Sum_probs=181.0
Q ss_pred hhhHHHHHHHHhHHHHHh-----------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 63 RRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~-----------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
.+..|+.++++.+++... +..+.|+++||+++|+++.. ++ |+|+||+|++||.+|||||||||||
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~-~v---L~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP-PV---LHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC-cc---cccceEEEcCCCEEEEECCCCCCHH
Confidence 344588888865444211 01235999999999965422 45 6669999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
||+++|.|+++ |++|+|.+||.++. .+...+.|+.+++|+|++.+|..|+++|+..+.
T Consensus 1277 TL~~lL~rl~~-----p~~G~I~IdG~di~---------------~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-- 1334 (1495)
T PLN03232 1277 SMLNALFRIVE-----LEKGRIMIDDCDVA---------------KFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-- 1334 (1495)
T ss_pred HHHHHHhCCCc-----CCCceEEECCEEhh---------------hCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--
Confidence 99999999999 99999999999987 567778899999999999999999999998532
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+...+++.++++.+++.+.+...++.+.+.|++ ....||||||||++||||| ||||+++
T Consensus 1335 ------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e------~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaL 1402 (1495)
T PLN03232 1335 ------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSE------GGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402 (1495)
T ss_pred ------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecC------CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 233456778888888877554445555554444 3457999999999999998 9999997
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|. ++|+|+|+| -.....||||+ ||++|++++.|+|++++..+.
T Consensus 1403 D~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl-VL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1403 DVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL-VLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCC
Confidence 63 899999999 34445699995 699999999999999987654
No 180
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=287.48 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=157.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 5 ~~~l~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~- 72 (265)
T PRK10253 5 VARLRGEQLTLGYGKY---TV---AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQ- 72 (265)
T ss_pred ccEEEEEEEEEEECCE---EE---eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhh-
Confidence 3479999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.......+..++|++|++.+++. ++.+|+.++...... ...+...+++.++++.+++.+
T Consensus 73 --------------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 135 (265)
T PRK10253 73 --------------HYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH--- 135 (265)
T ss_pred --------------hCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH---
Confidence 11122233457888998876654 888888765321100 011233456778899999976
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|
T Consensus 136 --------------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~t 201 (265)
T PRK10253 136 --------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVL 201 (265)
T ss_pred --------------HhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999999 999999652 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+||+++ +|++|+++..|++++++.
T Consensus 202 H~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 202 HDLNQACRYASHLI-ALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhh
Confidence 9 46789999996 599999999998877754
No 181
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=281.94 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=150.0
Q ss_pred cccccccceeeecCcce-eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~-~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|+++.|+.+.. .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDV---LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMSK 75 (233)
T ss_pred ceEEEEeEEEEcCCCCcceee---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc
Confidence 57999999999974321 245 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceee---eec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 163 TYFLQEYTIPRGSNSFSL---YDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~---~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
... .+. +..++|++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 76 ---------------~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-- 137 (233)
T PRK11629 76 ---------------LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEH-- 137 (233)
T ss_pred ---------------CCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch--
Confidence 111 111 2457888998877765 8889987653311 1223344567888999999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.+++.+.+||||||||++||||| ||||++||. |+|||++
T Consensus 138 ---------------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 202 (233)
T PRK11629 138 ---------------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202 (233)
T ss_pred ---------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45889999999999999999999 999999643 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
|| +.+.. +|+++ +|++|++++.++
T Consensus 203 sH~~~~~~~-~~~~~-~l~~G~i~~~~~ 228 (233)
T PRK11629 203 THDLQLAKR-MSRQL-EMRDGRLTAELS 228 (233)
T ss_pred eCCHHHHHh-hCEEE-EEECCEEEEEec
Confidence 99 44544 56885 599999987664
No 182
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=290.48 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=159.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc---ceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i 160 (361)
++|+++|+++.|++.. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++ |+|.++|.++
T Consensus 4 ~~l~i~~l~~~~~~~~-~~~---l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK-KPA---LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGITL 74 (282)
T ss_pred ceEEEEEEEEEcCCCC-ccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEEC
Confidence 4799999999996432 245 666999999999999999999999999999999999 887 8999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchH-HH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. .......+..++|++|++. .+ ..++.+|+.++.... .....+..+++.++++.++|.+
T Consensus 75 ~---------------~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--- 135 (282)
T PRK13640 75 T---------------AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLD--- 135 (282)
T ss_pred C---------------cCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChh---
Confidence 4 1122234556889999974 34 348999998754321 2233445567888999999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
++++++.+|||||+||++||||| |||+++||. |+|||++|
T Consensus 136 --------------~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 201 (282)
T PRK13640 136 --------------YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201 (282)
T ss_pred --------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999999 999999642 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
| +.+ ..|||++ +|++|++++.|++++++..+
T Consensus 202 H~~~~~-~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 202 HDIDEA-NMADQVL-VLDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred cCHHHH-HhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 9 454 5799996 59999999999998887654
No 183
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.4e-36 Score=280.98 Aligned_cols=195 Identities=16% Similarity=0.083 Sum_probs=148.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~- 68 (243)
T TIGR01978 1 LKIKDLHVSVEDK---EI---LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQDLLE- 68 (243)
T ss_pred CeEeeEEEEECCE---EE---EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEecCC-
Confidence 5789999999753 45 66699999999999999999999999999999994 6 899999999987641
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEec------CCChhhhhhhcccccccCCCc
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRR------SDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~------~~~~~~~~~v~~~l~~~gl~~ 235 (361)
..... .+..+++++|++.+++. ++.+++.+....... .+..+..+++.++++.+++.+
T Consensus 69 --------------~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (243)
T TIGR01978 69 --------------LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE 134 (243)
T ss_pred --------------CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch
Confidence 11111 12236778888877665 677777654321110 111233456788899999974
Q ss_pred ceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
. ..++.+. +||||||||++||||| ||||++||. +.|||
T Consensus 135 ~----------------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi 198 (243)
T TIGR01978 135 E----------------FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFL 198 (243)
T ss_pred h----------------hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEE
Confidence 2 2367776 5999999999999999 999999753 78999
Q ss_pred EEEc--Cccccc-cchhhHhhhhhhhcCCCCcccccc
Q 018083 290 VVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 290 iiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|| +.+..+ ||+++ +|++|+++..|+++++..
T Consensus 199 ~vsH~~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 234 (243)
T TIGR01978 199 IITHYQRLLNYIKPDYVH-VLLDGRIVKSGDVELAKE 234 (243)
T ss_pred EEEecHHHHHhhcCCeEE-EEeCCEEEEecCHHHhcc
Confidence 9999 466677 89996 599999999998875543
No 184
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-36 Score=304.19 Aligned_cols=193 Identities=17% Similarity=0.278 Sum_probs=165.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++++++|++|+|++ ++||++ |||+|.+||++||+|.||||||||+|+|+|.++ |++|+|+++|+...
T Consensus 5 ~~~ll~~~~i~K~Fgg---V~AL~~---v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~ 73 (500)
T COG1129 5 TPPLLELRGISKSFGG---VKALDG---VSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVA 73 (500)
T ss_pred ccceeeeecceEEcCC---ceeecc---ceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEcc
Confidence 3458999999999987 578555 999999999999999999999999999999999 99999999998875
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE---ecCCChhhhhhhcccccccCCCcc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
. ..+.+. ..-+..|+|++.+++. +|.+||.++.... +..+.+..++++.++|+.+++...
T Consensus 74 ~---------------~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~ 138 (500)
T COG1129 74 F---------------SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID 138 (500)
T ss_pred C---------------CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC
Confidence 1 122222 2347789999999999 9999999887643 346678888999999999998632
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVV 291 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIii 291 (361)
.+.+..+||.||||.|+||||| ||||++|. .|.+||+|
T Consensus 139 -----------------~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~I 201 (500)
T COG1129 139 -----------------PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI 201 (500)
T ss_pred -----------------hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2788999999999999999999 99999963 39999999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
|| +++.++||||. ||.+|+.+...+.
T Consensus 202 SHrl~Ei~~i~Drit-VlRDG~~v~~~~~ 229 (500)
T COG1129 202 SHRLDEVFEIADRIT-VLRDGRVVGTRPT 229 (500)
T ss_pred cCcHHHHHHhcCEEE-EEeCCEEeeeccc
Confidence 99 89999999996 5999999998873
No 185
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=270.44 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=168.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|++++|++++|+.. .+ |+++|++|++|.+++||||||||||||+.++++|++ +++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y~~~---~v---l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~--- 66 (252)
T COG4604 1 MITIENVSKSYGTK---VV---LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELT--- 66 (252)
T ss_pred CeeehhhhHhhCCE---Ee---eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeecc---
Confidence 58899999999874 55 555999999999999999999999999999999999 99999999999986
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccce-eEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~-~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
++.-.++........|...+... +|.+-+.||. +..++...++.+..+.++++.+.|.+
T Consensus 67 ------------~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~------- 127 (252)
T COG4604 67 ------------STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED------- 127 (252)
T ss_pred ------------cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-------
Confidence 23334445555666676655544 8999999985 34445556788889999999999998
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.+++..+||||||||+.||..| |||..+||- |+||++|-| +
T Consensus 128 ----------l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 128 ----------LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred ----------hHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 66999999999999999999999 999999752 999999999 7
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
.|.+++|.|+ -|++|+++..|++++++...
T Consensus 198 fAS~YsD~IV-AlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 198 FASCYSDHIV-ALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred HHHhhhhhee-eecCCEEEecCCHHHhcCHH
Confidence 9999999995 59999999999999998753
No 186
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=289.77 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=158.0
Q ss_pred cccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 84 SLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.|+++|++++|++... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 45899999999975320 135 666999999999999999999999999999999999 99999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
... . . .......+..++|++|++ .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 77 ~~~--~--~------~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~--- 142 (289)
T PRK13645 77 ANL--K--K------IKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPED--- 142 (289)
T ss_pred ccc--c--c------cccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh---
Confidence 100 0 0 001123345678899986 345558999998754311 11223334567778888998521
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
++++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 143 -------------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH 209 (289)
T PRK13645 143 -------------YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209 (289)
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 35889999999999999999999 999999653 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++.++||+++ +|++|+++..|++++++..+
T Consensus 210 ~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 210 NMDQVLRIADEVI-VMHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred CHHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 56778999996 59999999999988877654
No 187
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=285.17 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=149.6
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 67 (255)
T PRK11248 1 MLQISHLYADYGGK---PA---LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEG-- 67 (255)
T ss_pred CEEEEEEEEEeCCe---ee---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
....++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 ------------------~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 120 (255)
T PRK11248 68 ------------------PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG-------- 120 (255)
T ss_pred ------------------CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 01135778888777664 8888887653211 1222344567888999999986
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 121 ---------~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~ 191 (255)
T PRK11248 121 ---------AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE 191 (255)
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999642 789999999 56
Q ss_pred cccccchhhHhhh--hhhhcCCCCcc
Q 018083 296 LLSLTDRARIRTY--LGELLGIPPAK 319 (361)
Q Consensus 296 ~~~~aDri~vvl~--~G~iv~~g~~~ 319 (361)
+..+||+++ +|+ +|++++.++.+
T Consensus 192 ~~~~~d~i~-~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 192 AVFMATELV-LLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHhCCEEE-EEeCCCcEEEEEecCC
Confidence 778999996 588 59998877653
No 188
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-36 Score=285.00 Aligned_cols=204 Identities=17% Similarity=0.148 Sum_probs=152.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc----
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 159 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~---- 159 (361)
++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG---KG---CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAEL 70 (253)
T ss_pred ceEEEeeeEEEeCCc---eE---eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccccc
Confidence 579999999999753 35 666999999999999999999999999999999999 999999999876
Q ss_pred -cCcceEeEeeeecCCCcceeee----ecCCCCcccccchHH--HHH-HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 160 -GDGTYFLQEYTIPRGSNSFSLY----DTRSLSDDASDNINM--IKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 160 -i~~~~~~~~~~i~~~~~~~~~~----d~r~~i~~v~q~~~l--~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
+.. .... ..+..+++++|++.. ... ++.+|+.+..............+++.++++.+
T Consensus 71 ~~~~---------------~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l 135 (253)
T TIGR02323 71 ELYQ---------------LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEV 135 (253)
T ss_pred cccc---------------CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHc
Confidence 320 0000 112346777777531 121 44555543211000011123346777889999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g 285 (361)
++.+. .+++.+.+||||||||++||||| |||+++||. +
T Consensus 136 ~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 199 (253)
T TIGR02323 136 EIDPT----------------RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG 199 (253)
T ss_pred CCChh----------------hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 99631 35889999999999999999999 999999752 7
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
.|||++|| +.+..+||+++ +|++|++++.|++++++..+.+.++
T Consensus 200 ~tii~vsH~~~~~~~~~d~~~-~l~~G~i~~~~~~~~~~~~~~~~~~ 245 (253)
T TIGR02323 200 LAVIIVTHDLGVARLLAQRLL-VMQQGRVVESGLTDQVLDDPQHPYT 245 (253)
T ss_pred CEEEEEeCCHHHHHHhcCEEE-EEECCEEEEECCHHHHhcCCCCHHH
Confidence 89999999 56667899996 5999999999999888876654443
No 189
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.1e-36 Score=275.48 Aligned_cols=184 Identities=15% Similarity=0.219 Sum_probs=149.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|+. . ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~~l~~~~~~---~-----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 64 (213)
T TIGR01277 1 LALDKVRYEYEH---L-----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTG--- 64 (213)
T ss_pred CeEEeeeEEeCC---c-----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEccc---
Confidence 478999999963 2 566999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ...+..+++++|++.+++. ++.+|+.++...... .....++++.++++.+++.+
T Consensus 65 ------------~--~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--------- 120 (213)
T TIGR01277 65 ------------L--APYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIAD--------- 120 (213)
T ss_pred ------------C--ChhccceEEEeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHH---------
Confidence 1 1234568889999888775 999999865321111 12233556778899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++.+.+||||||||++||||| ||||++||. +.|||++|| .++
T Consensus 121 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 121 --------YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192 (213)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999642 789999999 566
Q ss_pred ccccchhhHhhhhhhhcCCCCc
Q 018083 297 LSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~ 318 (361)
..+||+++ +|++|++++.|++
T Consensus 193 ~~~~d~v~-~l~~g~i~~~~~~ 213 (213)
T TIGR01277 193 RAIASQIA-VVSQGKIKVVSDC 213 (213)
T ss_pred HhhcCeEE-EEECCeEEEecCC
Confidence 78999996 5999999887753
No 190
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=287.77 Aligned_cols=216 Identities=16% Similarity=0.173 Sum_probs=162.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++...-.|++|+|.++|.++.
T Consensus 22 ~~~~l~~~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNLFYGDK---QA---LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEEEECCe---eE---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 34579999999999753 45 6669999999999999999999999999999999871000037999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++........+...++++.++++.+++.+.+.
T Consensus 96 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 159 (272)
T PRK14236 96 DK-------------KVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK--- 159 (272)
T ss_pred cc-------------ccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH---
Confidence 10 01112334567889998877767889999765421111112233456777888888864210
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
..+++.+.+||||||||++||||| ||||++||. +.|||++|| ++
T Consensus 160 ----------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 229 (272)
T PRK14236 160 ----------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ 229 (272)
T ss_pred ----------HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence 135788999999999999999999 999999753 689999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+|||++ +|++|+++..|++++++..+.+..+
T Consensus 230 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 263 (272)
T PRK14236 230 AARVSDYTA-FMYMGKLVEYGDTDTLFTSPAKKQT 263 (272)
T ss_pred HHhhCCEEE-EEECCEEEecCCHHHHhcCCCcHHH
Confidence 778999996 5999999999999988876655443
No 191
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-36 Score=344.50 Aligned_cols=225 Identities=11% Similarity=0.095 Sum_probs=181.3
Q ss_pred hhhHHHHHHHHhHHHHHh-----------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcc
Q 018083 63 RRDAVFREVLQSYDQLRT-----------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 131 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~-----------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKS 131 (361)
.+..|+.++++.+++.+. +..+.|+++||+++|+++.. ++ |+|+||+|++||.+||||+||||||
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~V---L~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP-PV---LHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC-ce---ecceeEEEcCCCEEEEECCCCCCHH
Confidence 344588888765443211 11246999999999975432 45 6669999999999999999999999
Q ss_pred hhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeE
Q 018083 132 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 211 (361)
Q Consensus 132 TLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~ 211 (361)
||+++|.|+++ |++|+|.+||.++. .+.+.++|+.+++|+|++.+|..||++|+..+.
T Consensus 1280 TLl~lL~rl~~-----p~~G~I~IDG~dI~---------------~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-- 1337 (1622)
T PLN03130 1280 SMLNALFRIVE-----LERGRILIDGCDIS---------------KFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-- 1337 (1622)
T ss_pred HHHHHHhCcCC-----CCCceEEECCEecc---------------cCCHHHHHhccEEECCCCccccccHHHHhCcCC--
Confidence 99999999999 99999999999987 567788899999999999999999999998532
Q ss_pred EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee
Q 018083 212 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 282 (361)
Q Consensus 212 ~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L 282 (361)
+...+++.++++.+++.+.+...++.+.+.|.+ ....||||||||++||||| ||||+++
T Consensus 1338 ------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge------~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1338 ------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSE------AGENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred ------CCCHHHHHHHHHHcCcHHHHHhCccccCccccC------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 224566788888888877554444555554433 4568999999999999999 9999997
Q ss_pred cC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 283 RD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 283 ~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|. ++|+|+|+| -.....||||+ ||++|+|++.|+|++++..+.
T Consensus 1406 D~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl-VLd~G~IvE~Gt~~eLl~~~~ 1464 (1622)
T PLN03130 1406 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL-VLDAGRVVEFDTPENLLSNEG 1464 (1622)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE-EEECCEEEEeCCHHHHHhCCC
Confidence 63 899999999 34445699995 699999999999999987643
No 192
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=291.75 Aligned_cols=217 Identities=19% Similarity=0.228 Sum_probs=163.3
Q ss_pred HhhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 79 RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 79 ~~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
++...++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|.
T Consensus 33 ~~~~~~~l~i~~l~~~~~~~---~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~ 106 (285)
T PRK14254 33 ASSGETVIEARDLNVFYGDE---QA---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK 106 (285)
T ss_pred ccCCCceEEEEEEEEEECCE---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 33456789999999999753 45 6669999999999999999999999999999999861000147999999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
++... .......+..++|++|++.+++.++.+|+.++.... ... ....+++.++++.+++...+
T Consensus 107 ~i~~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~-~~~-~~~~~~~~~~l~~~~l~~~i- 170 (285)
T PRK14254 107 NVYDA-------------DVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQ-GYD-GDIDERVEESLRRAALWDEV- 170 (285)
T ss_pred Ecccc-------------ccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHc-CCc-HHHHHHHHHHHHHcCCCchh-
Confidence 76310 011123345678899988777668888887654311 111 23456678888898885311
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
...+++++.+||||||||++||||| |||+++||. +.|||++||
T Consensus 171 ------------~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~ 238 (285)
T PRK14254 171 ------------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238 (285)
T ss_pred ------------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 0035788999999999999999999 999999753 579999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
+.+..+|||++++|++|++++.|++++++..+.+..
T Consensus 239 ~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~ 275 (285)
T PRK14254 239 MQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQR 275 (285)
T ss_pred HHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHH
Confidence 567789999744479999999999988877655544
No 193
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-36 Score=287.97 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=159.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|+......+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~-- 72 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLT-- 72 (277)
T ss_pred ceEEEEEEEEEcCCCCcCee---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECC--
Confidence 37899999999974321235 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH-HH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++. .+ ..++.+|+.++.... ........+++.++++.+++.+
T Consensus 73 -------------~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 132 (277)
T PRK13642 73 -------------AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLD------ 132 (277)
T ss_pred -------------cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHh------
Confidence 1112234567889999974 34 348999998754311 1223344567788899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 133 -----------~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 133 -----------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45889999999999999999999 999999642 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+. .||+++ +|++|++++.|++++++..+
T Consensus 202 ~~~~-~~d~i~-~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 202 DEAA-SSDRIL-VMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHH-hCCEEE-EEECCEEEEeCCHHHHhcCH
Confidence 4554 699996 59999999999998887654
No 194
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.3e-36 Score=284.25 Aligned_cols=194 Identities=15% Similarity=0.091 Sum_probs=153.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~---- 66 (256)
T TIGR03873 2 LRLSRVSWSAGGR---LI---VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLH---- 66 (256)
T ss_pred ceEEeEEEEECCE---EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcc----
Confidence 6789999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHH-HHHHhccccceeEE---ecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~-~ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++.++. .++.+|+.++.... .........+++.++++.+++.+
T Consensus 67 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 129 (256)
T TIGR03873 67 -----------GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH------ 129 (256)
T ss_pred -----------cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh------
Confidence 1111122345778888875443 38888887653211 01112233456788899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| ||||++||. +.|||++|| +
T Consensus 130 -----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 130 -----------LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred -----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.+..+||+++ +|++|++++.|++++++.
T Consensus 199 ~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 199 LAASYCDHVV-VLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhCCEEE-EEeCCCEEEecCHHHhhC
Confidence 6678999996 599999999998877654
No 195
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-36 Score=284.49 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=154.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~---~i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~--- 67 (258)
T PRK13548 2 MLEARNLSVRLGGR---TL---LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLA--- 67 (258)
T ss_pred eEEEEeEEEEeCCe---ee---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcc---
Confidence 58899999999753 45 666999999999999999999999999999999999 99999999997654
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 126 (258)
T PRK13548 68 ------------DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH-GLSRAEDDALVAAALAQVDLAH-------- 126 (258)
T ss_pred ------------cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc-CCCcHHHHHHHHHHHHHcCCHh--------
Confidence 11112223457888888766443 8889987754321 1122333456778899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------------CCCceeecC-----------------CccEEEE
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~~-----------------g~tvIii 291 (361)
..++.+.+||||||||++||||| ||||++||. +.|||++
T Consensus 127 ---------~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 197 (258)
T PRK13548 127 ---------LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVV 197 (258)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45889999999999999999975 999999642 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|| ..+..+||+++ +|++|+++..|++++++.
T Consensus 198 sH~~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 198 LHDLNLAARYADRIV-LLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ECCHHHHHHhcCEEE-EEECCEEEeeCCHHHHhC
Confidence 99 46678999996 599999999988877654
No 196
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.8e-36 Score=293.18 Aligned_cols=186 Identities=10% Similarity=0.065 Sum_probs=151.4
Q ss_pred eeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeec
Q 018083 93 LSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 172 (361)
Q Consensus 93 ~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~ 172 (361)
++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 k~y~~~---~~---l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---------- 59 (302)
T TIGR01188 1 KVYGDF---KA---VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVR---------- 59 (302)
T ss_pred CeeCCe---eE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc----------
Confidence 357542 46 666999999999999999999999999999999999 999999999987641
Q ss_pred CCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEech
Q 018083 173 RGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGL 251 (361)
Q Consensus 173 ~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~ 251 (361)
.....+..+++++|++.+++. ++.+|+.+..... ........+++.++++.+++.+
T Consensus 60 ------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------------- 116 (302)
T TIGR01188 60 ------EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY-GLPKDEAEERAEELLELFELGE---------------- 116 (302)
T ss_pred ------CHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh----------------
Confidence 011234568889999887776 8899987643211 2223445567888999999987
Q ss_pred hhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccccccchhh
Q 018083 252 AVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRAR 304 (361)
Q Consensus 252 ~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~aDri~ 304 (361)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +++..+||+++
T Consensus 117 -~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~ 195 (302)
T TIGR01188 117 -AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIA 195 (302)
T ss_pred -HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 45889999999999999999999 999999753 799999999 57788999996
Q ss_pred HhhhhhhhcCCCCccccccC
Q 018083 305 IRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 305 vvl~~G~iv~~g~~~~i~~~ 324 (361)
+|++|+++..|+++++...
T Consensus 196 -~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 196 -IIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred -EEECCEEEEECCHHHHHHh
Confidence 5999999999999887553
No 197
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=284.84 Aligned_cols=217 Identities=16% Similarity=0.179 Sum_probs=162.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++|++++|++. .+ |+++||+|++||+++|+|+||||||||+++|+|+++......++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 5 IPAIKVKDLSFYYNTS---KA---IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred cceEEEEEEEEEECCe---Ee---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 3579999999999753 45 66699999999999999999999999999999998721000058999999987631
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..+++++|++.+++.++.+|+.++.......+.....+++.++++.+++...+
T Consensus 79 ~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 140 (259)
T PRK14260 79 P-------------RININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV----- 140 (259)
T ss_pred c-------------ccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----
Confidence 0 0111223456788999987777789999876543211112233345667778888875311
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++++.+||||||||++||||| ||||++||. ++|||++|| +++
T Consensus 141 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i 212 (259)
T PRK14260 141 --------KDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212 (259)
T ss_pred --------hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0135788999999999999999999 999999753 689999999 677
Q ss_pred ccccchhhHhhh-----hhhhcCCCCccccccCCCCCCCCc
Q 018083 297 LSLTDRARIRTY-----LGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 297 ~~~aDri~vvl~-----~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
..+||+++ +|+ +|++++.|++++++..+.++.+..
T Consensus 213 ~~~~d~i~-~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~ 252 (259)
T PRK14260 213 TRVSDFTA-FFSTDESRIGQMVEFGVTTQIFSNPLDSRTRD 252 (259)
T ss_pred HHhcCeEE-EEeccCCCCceEEEeCCHHHHhcCCCChHHHH
Confidence 89999996 487 599999999999987766555433
No 198
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.5e-36 Score=276.62 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=145.2
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|+++.|+++. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~- 71 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV---LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSK- 71 (221)
T ss_pred CEEEEeeeEEccCCCcceEe---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhh-
Confidence 478999999996421 1245 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeee---ecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFSLY---DTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~---d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.... ..+ ..++|++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 72 --------------~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--- 133 (221)
T TIGR02211 72 --------------LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG-KKSVKEAKERAYEMLEKVGLEH--- 133 (221)
T ss_pred --------------cCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---
Confidence 1111 112 457888998877755 8889987643211 1122334556778899999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|
T Consensus 134 --------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t 199 (221)
T TIGR02211 134 --------------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199 (221)
T ss_pred --------------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45889999999999999999999 999999652 78999999
Q ss_pred c--CccccccchhhHhhhhhhhc
Q 018083 293 H--GDLLSLTDRARIRTYLGELL 313 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv 313 (361)
| +.+ ..||+++ +|++|+++
T Consensus 200 H~~~~~-~~~d~v~-~l~~G~i~ 220 (221)
T TIGR02211 200 HDLELA-KKLDRVL-EMKDGQLF 220 (221)
T ss_pred CCHHHH-hhcCEEE-EEeCCEec
Confidence 9 444 4589996 59999875
No 199
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.5e-36 Score=274.80 Aligned_cols=182 Identities=21% Similarity=0.252 Sum_probs=142.2
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|+++.|++.. .++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~~-~~i---l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~----- 66 (211)
T cd03225 1 ELKNLSFSYPDGA-RPA---LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLT----- 66 (211)
T ss_pred CceeEEEecCCCC-eee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc-----
Confidence 4789999997521 145 666999999999999999999999999999999999 99999999997764
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++. ++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ----------~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 126 (211)
T cd03225 67 ----------KLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEG--------- 126 (211)
T ss_pred ----------cCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHh---------
Confidence 1111223456788999874 23348889987653211 1122334556778899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++|| .++.
T Consensus 127 --------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 127 --------LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLL 198 (211)
T ss_pred --------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 5677
Q ss_pred cccchhhHhhhhhh
Q 018083 298 SLTDRARIRTYLGE 311 (361)
Q Consensus 298 ~~aDri~vvl~~G~ 311 (361)
.+||+++ +|++|+
T Consensus 199 ~~~d~i~-~l~~G~ 211 (211)
T cd03225 199 ELADRVI-VLEDGK 211 (211)
T ss_pred HhCCEEE-EEeCCC
Confidence 8899995 588874
No 200
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-36 Score=270.46 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=164.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++++..++ ++ |+++||++++||+++|+||||||||||+|.|+|-+. |++|++.++|.++.
T Consensus 1 mi~a~nls~~~~Gr---~l---l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~--- 66 (259)
T COG4559 1 MIRAENLSYSLAGR---RL---LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLN--- 66 (259)
T ss_pred CeeeeeeEEEeecc---ee---ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChh---
Confidence 58899999998664 45 555999999999999999999999999999999999 99999999999886
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHH-HHHHHHhccccceeEEecCC-ChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKLWIMEGVRHGELVIRRSD-SSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-~~~ti~~ni~~~~~~~~~~~-~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
++...+....-+..+|+..+ |+.++.+-|.+|...++... ..+..+.+.++|...++..
T Consensus 67 ------------~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~------- 127 (259)
T COG4559 67 ------------SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG------- 127 (259)
T ss_pred ------------hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-------
Confidence 34555555556677888765 67789999998877553322 2244445677888888887
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------------CCCceeec----------------CCccEEEE
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFR----------------DDKPVVVV 291 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~----------------~g~tvIii 291 (361)
++.+...+|||||||||.+||.| ||||++|| +|..|+.|
T Consensus 128 ----------la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~V 197 (259)
T COG4559 128 ----------LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197 (259)
T ss_pred ----------hhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 56888899999999999999998 99999975 28899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
-| +.++.|||||+ +|++|+++..|++++++..+
T Consensus 198 LHDLNLAA~YaDriv-ll~~Grv~a~g~p~~vlt~E 232 (259)
T COG4559 198 LHDLNLAAQYADRIV-LLHQGRVIASGSPQDVLTDE 232 (259)
T ss_pred EccchHHHHhhheee-eeeCCeEeecCCHHHhcCHH
Confidence 99 78899999995 59999999999999988754
No 201
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=287.86 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=161.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 18 ~~~~l~i~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGK---TV---LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred cCcEEEEeeEEEEECCE---EE---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 35689999999999753 45 6669999999999999999999999999999999981100026999999997764
Q ss_pred cceEeEeeeecCCCcce-eeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSF-SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~-~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. . .....+..++|++|++.+++.++.+|+.++..........+.++.+.++++.+++....
T Consensus 92 ~---------------~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 153 (276)
T PRK14271 92 N---------------YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV--- 153 (276)
T ss_pred c---------------cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh---
Confidence 0 1 11123456788999887776788899886542111112233344556677888886411
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 154 ----------~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~ 223 (276)
T PRK14271 154 ----------KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223 (276)
T ss_pred ----------hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 0034778999999999999999999 999999753 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
.+..+|||++ +|++|++++.|++++++..+.++.
T Consensus 224 ~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~~~~~ 257 (276)
T PRK14271 224 QAARISDRAA-LFFDGRLVEEGPTEQLFSSPKHAE 257 (276)
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCcCcHH
Confidence 6778999996 599999999999999987765543
No 202
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=282.89 Aligned_cols=214 Identities=17% Similarity=0.174 Sum_probs=158.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|+.. .+ |+++||+|.+||+++|+||||||||||+++|+|+.+.....+++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGKF---EA---LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECCe---eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 4579999999999752 45 66699999999999999999999999999999986411000258999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++|++|++.+++.++.+|+.++............++++.++++.+++...+
T Consensus 77 ~-------------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i----- 138 (252)
T PRK14255 77 P-------------NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV----- 138 (252)
T ss_pred c-------------cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-----
Confidence 0 0011123456788898887766688888876532111111122334555667777664211
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 139 --------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 139 --------KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA 210 (252)
T ss_pred --------hhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence 0135788999999999999999999 999999753 689999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+||+++ +|++|++++.|++.+++..+.+..
T Consensus 211 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14255 211 SRISDKTA-FFLTGNLIEFADTKQMFLNPKEKE 242 (252)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHhcCCCChH
Confidence 78999996 599999999999999988776543
No 203
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.1e-36 Score=314.64 Aligned_cols=222 Identities=11% Similarity=0.159 Sum_probs=167.9
Q ss_pred hhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 64 RDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
+..|+.++++.+++.... ..+.++++|++++|++.. ++ |+++||+|++|++++|+||||||||||++
T Consensus 305 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~--~~---l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ 379 (585)
T TIGR01192 305 KLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSS--QG---VFDVSFEAKAGQTVAIVGPTGAGKTTLIN 379 (585)
T ss_pred HHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCC--cc---ccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 344778877654322111 123589999999997543 35 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|.++. .+...+.+..+++++|++.+|..++.+|+.++..
T Consensus 380 ll~g~~~-----~~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~----- 434 (585)
T TIGR01192 380 LLQRVYD-----PTVGQILIDGIDIN---------------TVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE----- 434 (585)
T ss_pred HHccCCC-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-----
Confidence 9999999 99999999998875 2344456778999999999998999999987533
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
....+++.++++.+++.+.+.+.++.+.. ...+....||||||||++||||| ||||++||.
T Consensus 435 --~~~~~~~~~a~~~~~~~~~i~~l~~g~~t------~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 435 --GATDEEVYEAAKAAAAHDFILKRSNGYDT------LVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred --CCCHHHHHHHHHHhCcHHHHHhccccccc------hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 11233444555555554432222222222 23556778999999999999998 999999763
Q ss_pred -------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| .+....||+|+ +|++|++++.|+++++...
T Consensus 507 ~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 507 EARVKNAIDALRKNRTTFIIAHRLSTVRNADLVL-FLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEE-EEECCEEEEECCHHHHHHC
Confidence 799999999 44446799995 6999999999999888764
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=287.50 Aligned_cols=216 Identities=17% Similarity=0.188 Sum_probs=160.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|+++.|++. .+ |+++||+|++|++++|+|+||||||||+++|+|+++.....|++|+|.++|.++.
T Consensus 21 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 21 KKVVFDTQNLNLWYGED---HA---LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred CceEEEEeeeEEEECCc---ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 34589999999999753 45 6669999999999999999999999999999999851111148999999998763
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.......+....++.+.++++.+++...+
T Consensus 95 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l---- 157 (271)
T PRK14238 95 DK-------------SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL---- 157 (271)
T ss_pred cc-------------cccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH----
Confidence 10 0112233556888999988776788999987543111111122234455666666542211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 158 ---------~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 228 (271)
T PRK14238 158 ---------KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228 (271)
T ss_pred ---------HHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence 0135788999999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+||+++ +|++|+++..|++++++..|.+.++
T Consensus 229 i~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~ 262 (271)
T PRK14238 229 AARISDKTA-FFLNGYVNEYDDTDKIFSNPSDKRT 262 (271)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHcCCCCHHH
Confidence 778999996 5999999999999999887765443
No 205
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-36 Score=284.77 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=161.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++...
T Consensus 9 ~~l~i~~v~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGSF---LA---VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECCE---EE---eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 479999999999753 45 666999999999999999999999999999999986111013789999999876310
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..+++++|++.+++.++.+|+.++..... . .....+++.++++.+++...+
T Consensus 83 -------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l------ 141 (264)
T PRK14243 83 -------------DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARING-Y-KGDMDELVERSLRQAALWDEV------ 141 (264)
T ss_pred -------------ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcC-c-chHHHHHHHHHHHHhCchhhH------
Confidence 0111233556888999987776689999987643211 1 122334556667777774311
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
...+++.+.+||||||||++||||| |||+++||. +.|||++|| +++.
T Consensus 142 -------~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 142 -------KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAA 214 (264)
T ss_pred -------HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 0134788999999999999999999 999999753 689999999 5778
Q ss_pred cccchhhHhhh---------hhhhcCCCCccccccCCCCCCCC
Q 018083 298 SLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 298 ~~aDri~vvl~---------~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+|||++ +|+ +|++++.|++++++..|.+.+++
T Consensus 215 ~~~d~v~-~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 256 (264)
T PRK14243 215 RVSDMTA-FFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATR 256 (264)
T ss_pred HhCCEEE-EEecccccccccCceEEEeCCHHHHHhCCCcHHHH
Confidence 9999996 487 79999999999998877665443
No 206
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.9e-36 Score=311.28 Aligned_cols=224 Identities=15% Similarity=0.167 Sum_probs=167.4
Q ss_pred hhhhhHHHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 61 QRRRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
.+....|+.++++.+++.... ....++++|++++|+++. .++ |+++||+|++|++++|+||||||||||++
T Consensus 287 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ 362 (544)
T TIGR01842 287 ARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGK-KPT---LRGISFRLQAGEALAIIGPSGSGKSTLAR 362 (544)
T ss_pred HHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 334455899998654432111 123599999999996532 245 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|.++. .+.....+..+++|+|++.+|+.++.+|+.++..
T Consensus 363 ll~g~~~-----~~~G~i~~~g~~i~---------------~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~----- 417 (544)
T TIGR01842 363 LIVGIWP-----PTSGSVRLDGADLK---------------QWDRETFGKHIGYLPQDVELFPGTVAENIARFGE----- 417 (544)
T ss_pred HHhCCCC-----CCCceEEECCEehh---------------hCCHHHHhhheEEecCCcccccccHHHHHhccCC-----
Confidence 9999999 99999999998875 2344456778999999999999999999984321
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
....+++.++++.+++.+.+...++.+.. ...+....||||||||++||||| ||||++||.
T Consensus 418 --~~~~~~~~~~~~~~~~~~~i~~l~~gl~t------~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 418 --NADPEKIIEAAKLAGVHELILRLPDGYDT------VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred --CCCHHHHHHHHHHhChHHHHHhCcccccc------ccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 12233444555555554322111222222 23455778999999999999998 999999752
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
++|+|++|| ......||+++ +|++|++++.|+++++.
T Consensus 490 ~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 490 EQALANAIKALKARGITVVVITHRPSLLGCVDKIL-VLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEeeCCHHHHh
Confidence 689999999 44567899995 69999999999987764
No 207
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=289.38 Aligned_cols=216 Identities=19% Similarity=0.149 Sum_probs=161.9
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+.+.....|++|+|.++|.++.
T Consensus 36 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF---EA---VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 55689999999999753 35 6669999999999999999999999999999998531100138999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++.......+....++++.++++.+++...+
T Consensus 110 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---- 172 (286)
T PRK14275 110 GK-------------FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV---- 172 (286)
T ss_pred hc-------------ccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch----
Confidence 10 0011123556888999987776699999987643211111223345666778888874211
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++.+.+||||||||++||||| ||||++||. ++|||++|| +.
T Consensus 173 ---------~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 173 ---------SDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred ---------hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 0035788999999999999999999 999999753 679999999 56
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+..+|||++ +|++|+++..|++++++..+.++.+
T Consensus 244 ~~~~~d~i~-~L~~G~i~~~g~~~~~~~~~~~~~~ 277 (286)
T PRK14275 244 ASRVSDYTM-FFYEGVLVEHAPTAQLFTNPKDRMT 277 (286)
T ss_pred HHHhCCEEE-EEECCEEEEeCCHHHHHhCCCcHHH
Confidence 678999996 5999999999999988877655443
No 208
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.7e-36 Score=280.30 Aligned_cols=202 Identities=15% Similarity=0.220 Sum_probs=162.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++. .+ |+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~~---~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~--- 66 (237)
T TIGR00968 1 IEIANISKRFGSF---QA---LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATR--- 66 (237)
T ss_pred CEEEEEEEEECCe---ee---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..++|++|++.+++. ++.+|+.+..... ........+.+.++++.+++.+
T Consensus 67 ------------~~--~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (237)
T TIGR00968 67 ------------VH--ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEG--------- 122 (237)
T ss_pred ------------CC--hhhcCEEEEecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 11 124567889999888875 8899997654311 1122334466778899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
++++.+.+||+||+||++||||| |||+++||. ++|||++|| .++
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 123 --------LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999642 689999999 566
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
.++||+++ +|++|++++.|++++++..+..+++..++
T Consensus 195 ~~~~d~i~-~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 231 (237)
T TIGR00968 195 MEVADRIV-VMSNGKIEQIGSPDEVYDHPANPFVMSFL 231 (237)
T ss_pred HhhcCEEE-EEECCEEEEecCHHHHHcCCCcHHHHHhc
Confidence 78999996 59999999999999888766655544443
No 209
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.5e-36 Score=340.27 Aligned_cols=226 Identities=11% Similarity=0.019 Sum_probs=182.9
Q ss_pred hhhhhhHHHHHHHHhHHHHH---h--------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCC
Q 018083 60 DQRRRDAVFREVLQSYDQLR---T--------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 128 (361)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~---~--------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGS 128 (361)
....++.|+.++++.+++.+ . +..+.|+++||+++|+++.. ++ |+|+||+|++||.+||+|+|||
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~v---L~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD-LV---LRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCc-cc---ccceeEEEcCCCEEEEECCCCC
Confidence 33445569999986544321 0 12246999999999976432 46 5669999999999999999999
Q ss_pred CcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccc
Q 018083 129 GKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG 208 (361)
Q Consensus 129 GKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~ 208 (361)
|||||+++|.|+++ |++|+|.+||.++. .+.+.+.|+.+++|+|++.+|..||++|+...
T Consensus 1324 GKSTL~~lL~rl~~-----~~~G~I~IdG~dI~---------------~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~ 1383 (1522)
T TIGR00957 1324 GKSSLTLGLFRINE-----SAEGEIIIDGLNIA---------------KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF 1383 (1522)
T ss_pred CHHHHHHHHhcCcc-----CCCCeEEECCEEcc---------------ccCHHHHHhcCeEECCCCcccCccHHHHcCcc
Confidence 99999999999999 99999999999987 56778889999999999999999999999721
Q ss_pred eeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCc
Q 018083 209 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPY 279 (361)
Q Consensus 209 ~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt 279 (361)
. +...+++.++++.+++.+.+...++.+.+.|++ ....||||||||++||||| ||||
T Consensus 1384 -------~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e------~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT 1449 (1522)
T TIGR00957 1384 -------S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAE------GGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449 (1522)
T ss_pred -------c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecC------CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 1 233466778889998887665555566665544 3457999999999999998 9999
Q ss_pred eeecC---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 280 LSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 280 ~~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+++|. ++|+|+|+| -.....||||+ ||++|+|++.|+|++++..
T Consensus 1450 SalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIl-Vld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1450 AAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI-VLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 99763 899999999 44556699995 6999999999999999875
No 210
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=279.06 Aligned_cols=177 Identities=19% Similarity=0.302 Sum_probs=155.1
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCc
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 188 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~ 188 (361)
+++|+++...++||.|+||||||||+|+|+|+.+ |+.|.|.+||.-+. .. ..++++...++.+|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~----Ds-------~k~i~lp~~~RriG 79 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLV----DA-------EKGIFLPPEKRRIG 79 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEee----cc-------cCCcccChhhheee
Confidence 4899999967999999999999999999999999 99999999996542 11 11455666778899
Q ss_pred ccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhh
Q 018083 189 DASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 267 (361)
Q Consensus 189 ~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQ 267 (361)
||||+..+|++ +|..|+.||.... ......++...+|+.+ +++++|..||||+||
T Consensus 80 YVFQDARLFpH~tVrgNL~YG~~~~-------~~~~fd~iv~lLGI~h-----------------LL~R~P~~LSGGEkQ 135 (352)
T COG4148 80 YVFQDARLFPHYTVRGNLRYGMWKS-------MRAQFDQLVALLGIEH-----------------LLDRYPGTLSGGEKQ 135 (352)
T ss_pred eEeeccccccceEEecchhhhhccc-------chHhHHHHHHHhCcHH-----------------HHhhCCCccCcchhh
Confidence 99999999999 9999999987632 3455667788899999 789999999999999
Q ss_pred hhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcc
Q 018083 268 NQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 268 RvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
||||+||| |||.++||. +.+|++||| ++++++||+++ +|++|++.+.|+.+
T Consensus 136 RVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV-~le~GkV~A~g~~e 214 (352)
T COG4148 136 RVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVV-VLENGKVKASGPLE 214 (352)
T ss_pred HHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEE-EecCCeEEecCcHH
Confidence 99999998 999999873 899999999 79999999995 69999999999999
Q ss_pred ccccCCC
Q 018083 320 QIFDIPE 326 (361)
Q Consensus 320 ~i~~~~~ 326 (361)
+++..+.
T Consensus 215 ~v~~~~~ 221 (352)
T COG4148 215 EVWGSPD 221 (352)
T ss_pred HHhcCcc
Confidence 9998864
No 211
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=305.92 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=158.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc--ccceeeeccccc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVG 160 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i 160 (361)
+++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ | ++|+|+++|.++
T Consensus 3 ~~~l~~~nl~~~~~~~---~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 3 EYLLEMKNITKTFGGV---KA---LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-----HGTYEGEIIFEGEEL 71 (506)
T ss_pred CceEEEeeeEEEeCCe---Ee---ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEEC
Confidence 3579999999999753 46 566999999999999999999999999999999998 6 799999999876
Q ss_pred CcceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcc
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
.. ....+ .+..++|++|++.+++. ++.+|+.++..... ..+.....+++.++++.+++..
T Consensus 72 ~~---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 135 (506)
T PRK13549 72 QA---------------SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI- 135 (506)
T ss_pred CC---------------CCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-
Confidence 41 11111 23458899999877766 89999987654221 1122344567888999999976
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 291 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIii 291 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 136 ----------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~ 199 (506)
T PRK13549 136 ----------------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYI 199 (506)
T ss_pred ----------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34889999999999999999999 999999763 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
|| +.+..+||+++ +|++|+++..|+++++.
T Consensus 200 tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 200 SHKLNEVKAISDTIC-VIRDGRHIGTRPAAGMT 231 (506)
T ss_pred eCcHHHHHHhcCEEE-EEECCEEeeecccccCC
Confidence 99 56778999996 59999999999887663
No 212
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.2e-36 Score=277.18 Aligned_cols=194 Identities=19% Similarity=0.182 Sum_probs=148.4
Q ss_pred ccccccccceeeecCcce-eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~-~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++|+++|+++.|++... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~ 75 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSI---LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLH 75 (228)
T ss_pred CceEEEeeeEEEccCCCcceEE---EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcc
Confidence 357999999999975321 135 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
... ....... +..+++++|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 76 ~~~------------~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---- 138 (228)
T PRK10584 76 QMD------------EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR-GESSRQSRNGAKALLEQLGLGK---- 138 (228)
T ss_pred cCC------------HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHh----
Confidence 100 0000011 2357788888877665 7888887653211 1122345667888999999986
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 139 -------------~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 139 -------------RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred -------------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~ 315 (361)
......||+++ +|++|++++.
T Consensus 206 ~~~~~~~~d~i~-~l~~g~i~~~ 227 (228)
T PRK10584 206 DLQLAARCDRRL-RLVNGQLQEE 227 (228)
T ss_pred CHHHHHhCCEEE-EEECCEEEec
Confidence 22335699995 5999998653
No 213
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=281.70 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=156.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecccc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSV 159 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~ 159 (361)
.++|+++||++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+
T Consensus 2 ~~~l~~~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 2 QTIIRVEKLAKTFNQH---QA---LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRT 70 (262)
T ss_pred CcEEEEeeEEEEeCCe---EE---EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEe
Confidence 3579999999999753 45 666999999999999999999999999999999998 65 5999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------cCCChhhhhhhccccccc
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------RSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------~~~~~~~~~~v~~~l~~~ 231 (361)
+... .. ........+..++|++|++.+++. ++.+|+.++..... .......++++.++++.+
T Consensus 71 ~~~~--------~~--~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (262)
T PRK09984 71 VQRE--------GR--LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV 140 (262)
T ss_pred cccc--------cc--cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc
Confidence 6410 00 000111234567889999887775 89999986532100 001223456778899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g 285 (361)
++.+ .+++.+.+||||||||++||||| ||||++||. |
T Consensus 141 ~l~~-----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 203 (262)
T PRK09984 141 GMVH-----------------FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG 203 (262)
T ss_pred CCHH-----------------HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 9976 45889999999999999999999 999999753 6
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+|||++|| ..+..+||+++ +|++|+++..|+++++
T Consensus 204 ~tvii~tH~~~~~~~~~d~i~-~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 204 ITVVVTLHQVDYALRYCERIV-ALRQGHVFYDGSSQQF 240 (262)
T ss_pred CEEEEEeCCHHHHHHhCCEEE-EEECCEEEEeCCHHHh
Confidence 89999999 45789999996 5999999999988764
No 214
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=305.40 Aligned_cols=195 Identities=13% Similarity=0.188 Sum_probs=158.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~~i~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~- 70 (501)
T PRK10762 3 ALLQLKGIDKAFPGV---KA---LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTF- 70 (501)
T ss_pred ceEEEeeeEEEeCCe---EE---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC-
Confidence 579999999999752 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeee-ecCCCCcccccchHHHHH-HHHhccccceeEEe---cCCChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL-WIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.... ..+..+++++|++.+++. ++.+|+.++..... ..+....++++.++++.+++.+
T Consensus 71 --------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 133 (501)
T PRK10762 71 --------------NGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF--- 133 (501)
T ss_pred --------------CCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC---
Confidence 0000 123457899999877766 89999988653211 1112334566788999999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
.+++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 134 --------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sH 199 (501)
T PRK10762 134 --------------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199 (501)
T ss_pred --------------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34889999999999999999999 999999763 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
+++..+||+++ +|++|+++..++++++.
T Consensus 200 d~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 200 RLKEIFEICDDVT-VFRDGQFIAEREVADLT 229 (501)
T ss_pred CHHHHHHhCCEEE-EEeCCEEEEecCcCcCC
Confidence 57779999996 59999999998887653
No 215
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=281.36 Aligned_cols=207 Identities=18% Similarity=0.221 Sum_probs=156.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeecccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 159 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~~ 159 (361)
+|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~~~~~~G~i~~~g~~ 72 (252)
T PRK14272 4 LLSAQDVNIYYGDK---QA---VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD-----LTPGARVTGRILLDGQD 72 (252)
T ss_pred EEEEeeeEEEECCE---Ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceeEEECCEE
Confidence 68999999999752 45 666999999999999999999999999999999997 53 8999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+... .......+..++|++|++.+++. ++.+|+.++.........+...+.+.++++.+++...+
T Consensus 73 ~~~~-------------~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l- 138 (252)
T PRK14272 73 IYGP-------------RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV- 138 (252)
T ss_pred cccC-------------ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh-
Confidence 6410 01112334567889999887775 88899876542111111222344555556666653211
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
...+++++.+||||||||++||||| |||+++||. ++|||++||
T Consensus 139 ------------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 206 (252)
T PRK14272 139 ------------KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206 (252)
T ss_pred ------------hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 0134788999999999999999999 999999753 699999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
..+..+|||++ +|++|++++.|++++++..|.+..
T Consensus 207 ~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14272 207 MHQAARVSDTTS-FFLVGDLVEHGPTDQLFTNPRDER 242 (252)
T ss_pred HHHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcCcHH
Confidence 56778999996 599999999999999987765544
No 216
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.5e-36 Score=283.83 Aligned_cols=209 Identities=12% Similarity=0.071 Sum_probs=156.7
Q ss_pred ccccccccceeeecCc-------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 83 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
|++|+++||++.|+.+ . ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~-~~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~ 71 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQH-QTV---LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSW 71 (268)
T ss_pred CceEEEeceEEEecCCccccccCc-eee---EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE
Confidence 3579999999999731 1 245 666999999999999999999999999999999999 99999999
Q ss_pred cccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhhhcccccccC
Q 018083 156 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 156 ~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
+|.++.... .......+..++|++|++. +++ .++.+++.+...............++.++++.++
T Consensus 72 ~g~~~~~~~------------~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 139 (268)
T PRK10419 72 RGEPLAKLN------------RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD 139 (268)
T ss_pred CCEeccccC------------hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcC
Confidence 998764100 0001123456788888863 222 2666666543221111122334456788899999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
+... ++++.+.+||||||||++||||| ||||++||. +.
T Consensus 140 l~~~----------------~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 140 LDDS----------------VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred CChh----------------HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 9632 35889999999999999999999 999999752 78
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
|||++|| .++..+||+++ +|++|++++.|++++++. +.++++
T Consensus 204 tiiivsH~~~~i~~~~d~i~-~l~~G~i~~~g~~~~~~~-~~~~~~ 247 (268)
T PRK10419 204 ACLFITHDLRLVERFCQRVM-VMDNGQIVETQPVGDKLT-FSSPAG 247 (268)
T ss_pred EEEEEECCHHHHHHhCCEEE-EEECCEEeeeCChhhccC-CCCHHH
Confidence 9999999 56778999996 599999999999988874 444444
No 217
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-36 Score=279.86 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=164.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.......|++|+|.++|.++...
T Consensus 3 ~l~~~~v~~~~~~~---~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~- 75 (250)
T PRK14266 3 RIEVENLNTYFDDA---HI---LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP- 75 (250)
T ss_pred EEEEEeEEEEeCCe---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc-
Confidence 58899999999753 45 666999999999999999999999999999999874111113899999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.....+.+..++|++|++.+++.++.+|+.++.......+....++++.++++.+++.+.+
T Consensus 76 ------------~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l------- 136 (250)
T PRK14266 76 ------------AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV------- 136 (250)
T ss_pred ------------cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH-------
Confidence 0112234567889999988777789999987543211112233456677888888885421
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
...+++.+.+||+|||||++||||| |||+++||. +.|||++|| .++..
T Consensus 137 ------~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 137 ------KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR 210 (250)
T ss_pred ------HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh
Confidence 0135788999999999999999999 999999753 789999999 57788
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
+||+++ +|++|++++.|++++++..|..+.+.
T Consensus 211 ~~~~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 242 (250)
T PRK14266 211 VSKYTS-FFLNGEIIESGLTDQIFINPKDKRTE 242 (250)
T ss_pred hcCEEE-EEECCeEEEeCCHHHHHhCCCChHHH
Confidence 999995 59999999999999998777665543
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-36 Score=282.87 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=159.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-----cceeeeccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 158 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-----~G~I~i~G~ 158 (361)
++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++|+
T Consensus 6 ~~l~~~nl~~~~~~~---~i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KI---LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-----LESEVRVEGRVEFFNQ 74 (261)
T ss_pred ceEEEeeEEEEeCCe---eE---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-----CCCCccccceEEECCE
Confidence 479999999999753 45 666999999999999999999999999999999998 64 799999987
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
++... .......+..+++++|++.+++.++.+|+.++.......+..+..+++.++++.+++.+.+.
T Consensus 75 ~i~~~-------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 141 (261)
T PRK14258 75 NIYER-------------RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141 (261)
T ss_pred Ehhcc-------------ccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh
Confidence 75300 01112234567888888777767888998765321111112233456677888888753110
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
..+++.+.+|||||+||++||||| ||||++||. +.|||++|
T Consensus 142 -------------~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 142 -------------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred -------------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 035788899999999999999999 999999642 78999999
Q ss_pred c--CccccccchhhHhhhh-----hhhcCCCCccccccCCCCCC
Q 018083 293 H--GDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~-----G~iv~~g~~~~i~~~~~~~~ 329 (361)
| ..+..+||+++ +|++ |++++.|++++++..|....
T Consensus 209 H~~~~i~~~~d~i~-~l~~~~~~~G~i~~~~~~~~~~~~~~~~~ 251 (261)
T PRK14258 209 HNLHQVSRLSDFTA-FFKGNENRIGQLVEFGLTKKIFNSPHDSR 251 (261)
T ss_pred CCHHHHHHhcCEEE-EEccCCCcCceEEEeCCHHHHHhCCCCHH
Confidence 9 57789999996 5999 99999999999988776544
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.1e-36 Score=308.80 Aligned_cols=212 Identities=12% Similarity=0.170 Sum_probs=162.0
Q ss_pred hccccccccceeeecCc--------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 82 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~--------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
..++|+++|+++.|+.+ ....+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~------~~G~i 342 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVV---VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEI 342 (529)
T ss_pred CCCcccccCcEEEeecCcccccccccccee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------CCcEE
Confidence 34589999999999521 01246 566999999999999999999999999999999974 68999
Q ss_pred eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEe-cCCChhhhhhhccccc
Q 018083 154 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 229 (361)
Q Consensus 154 ~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~-~~~~~~~~~~v~~~l~ 229 (361)
+++|+++... . .......+..++|++|++. +++. ++.+|+.++..... ..+....++++.++++
T Consensus 343 ~~~g~~i~~~--------~----~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~ 410 (529)
T PRK15134 343 WFDGQPLHNL--------N----RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410 (529)
T ss_pred EECCEEcccc--------c----hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 9999876410 0 0001112345788999863 5554 88899987643211 1222344567788899
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+++.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 411 ~~~l~~~----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 411 EVGLDPE----------------TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred HcCCCHH----------------HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 9999631 35889999999999999999999 999999653
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
|+|||+||| +.+..+|||++ +|++|++++.|++++++..|.+++++
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~~ 523 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVI-VLRQGEVVEQGDCERVFAAPQQEYTR 523 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEEcCHHHHhcCCCChHHH
Confidence 789999999 56778999996 59999999999999998877665543
No 220
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=304.66 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=158.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 3 TPYISMAGIGKSFGPV---HA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNK 71 (510)
T ss_pred CceEEEeeeEEEcCCe---EE---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCC
Confidence 3579999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEE---ecC---CChhhhhhhcccccccCCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVI---RRS---DSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~~---~~~~~~~~v~~~l~~~gl~ 234 (361)
..... .+..++|++|++.+++. ++.+|+.++.... ... +..+..+++.++++.+++.
T Consensus 72 ---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 136 (510)
T PRK09700 72 ---------------LDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK 136 (510)
T ss_pred ---------------CCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC
Confidence 11111 23458889999877765 8899998754311 111 1123456788899999998
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
+ .+++++.+||||||||++||||| ||||++||. |+|||
T Consensus 137 ~-----------------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tii 199 (510)
T PRK09700 137 V-----------------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199 (510)
T ss_pred C-----------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 6 34889999999999999999999 999999753 79999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|| +.+..+||+++ +|++|+++..|++++++.
T Consensus 200 ivsHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 200 YISHKLAEIRRICDRYT-VMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred EEeCCHHHHHHhCCEEE-EEECCEEeeecchhhCCH
Confidence 9999 56778999996 599999999998877643
No 221
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=285.33 Aligned_cols=215 Identities=16% Similarity=0.164 Sum_probs=161.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~~---~~---l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGF---LA---LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCceEEEeeEEEEeCCe---EE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 44589999999999753 45 6669999999999999999999999999999999861100026899999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..++|++|++.+++.++.+|+.++..... . .....+.+.++++.+++...+
T Consensus 91 ~~-------------~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l---- 151 (274)
T PRK14265 91 DS-------------QINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEV---- 151 (274)
T ss_pred cc-------------cchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhh----
Confidence 10 0111123456888999987776688999987532111 1 112234455667777764311
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 152 ---------~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 222 (274)
T PRK14265 152 ---------KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ 222 (274)
T ss_pred ---------HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0135788999999999999999999 999999753 689999999 57
Q ss_pred cccccchhhHhhh---------hhhhcCCCCccccccCCCCCCCC
Q 018083 296 LLSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 296 ~~~~aDri~vvl~---------~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
+..+|||++ +|+ +|++++.|++++++..+.++.++
T Consensus 223 ~~~~~d~i~-~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 266 (274)
T PRK14265 223 ASRVADWTA-FFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAR 266 (274)
T ss_pred HHHhCCEEE-EEecccccccccCceEEEeCCHHHHHhCCCCHHHH
Confidence 779999996 587 89999999999998877655543
No 222
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=263.90 Aligned_cols=188 Identities=16% Similarity=0.209 Sum_probs=159.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|+++.+.+++.+|.... ..+ |+|+|++|.+||+++++||||||||||+|+++|+.+ |..|.|.++|+.+.+
T Consensus 1 M~~l~~~~~sl~y~g~~-~~~---le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~g 71 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP-RSA---LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEG 71 (259)
T ss_pred CceeehhheEEecCCcc-hhh---hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccC
Confidence 35788999999997654 346 566999999999999999999999999999999999 999999999988862
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.-..-+.|||+..++|. ++.+|+.||+... +.++...++.+.+.+..+|+.+
T Consensus 72 --------------------PgaergvVFQ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~------ 124 (259)
T COG4525 72 --------------------PGAERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEG------ 124 (259)
T ss_pred --------------------CCccceeEeccCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCccc------
Confidence 11224678999999999 9999999998743 5666777888899999999998
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
..++++.+||||||||+.||||| |||+.+||. |+.+++|||
T Consensus 125 -----------~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i 193 (259)
T COG4525 125 -----------AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193 (259)
T ss_pred -----------ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 34899999999999999999999 999999652 999999999
Q ss_pred CccccccchhhHhhhh--hhhcCCCCc
Q 018083 294 GDLLSLTDRARIRTYL--GELLGIPPA 318 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~--G~iv~~g~~ 318 (361)
+++.-+++|++ +|.. |++++.-++
T Consensus 194 eEAlflatrLv-vlsp~pgRvv~~~~~ 219 (259)
T COG4525 194 EEALFLATRLV-VLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHhhhheeE-EecCCCceeeEecCC
Confidence 68889999994 5874 677765444
No 223
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-36 Score=277.16 Aligned_cols=194 Identities=15% Similarity=0.215 Sum_probs=156.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~i---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--- 66 (232)
T cd03300 1 IELENVSKFYGGF---VA---LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITN--- 66 (232)
T ss_pred CEEEeEEEEeCCe---ee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 4689999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.++.. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 67 ------------~~--~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (232)
T cd03300 67 ------------LP--PHKRPVNTVFQNYALFPHLTVFENIAFGLRLK-KLPKAEIKERVAEALDLVQLEG--------- 122 (232)
T ss_pred ------------CC--hhhcceEEEecccccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 00 113457888998887765 8888887653311 1122344567778899999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++.+..||+||+||++||||| |||+++||. +.|||++|| .++
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 123 --------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45889999999999999999999 999999642 789999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+||+++ +|++|++++.|++++++..+.
T Consensus 195 ~~~~d~i~-~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 195 LTMSDRIA-VMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred HHhcCEEE-EEECCEEEecCCHHHHHhCCc
Confidence 78999996 599999999998888876543
No 224
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-36 Score=278.04 Aligned_cols=193 Identities=16% Similarity=0.268 Sum_probs=156.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++ ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 l~~~~l~~~~~~----~~---l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~--- 65 (235)
T cd03299 1 LKVENLSKDWKE----FK---LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN--- 65 (235)
T ss_pred CeeEeEEEEeCC----ce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc---
Confidence 568999999974 24 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ..+..+++++|++.+++. ++.+|+.++.... ..+..+..+++.++++.+++.+
T Consensus 66 ------------~~--~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 121 (235)
T cd03299 66 ------------LP--PEKRDISYVPQNYALFPHMTVYKNIAYGLKKR-KVDKKEIERKVLEIAEMLGIDH--------- 121 (235)
T ss_pred ------------CC--hhHcCEEEEeecCccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 01 113457888888877754 8888887654321 1223445567788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+|||||+||++||||| ||||++||. ++|||++|| ..+
T Consensus 122 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~ 193 (235)
T cd03299 122 --------LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193 (235)
T ss_pred --------HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 45889999999999999999999 999999642 789999999 466
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+||+++ +|++|++++.|+++++...+.
T Consensus 194 ~~~~d~i~-~l~~G~i~~~~~~~~~~~~~~ 222 (235)
T cd03299 194 WALADKVA-IMLNGKLIQVGKPEEVFKKPK 222 (235)
T ss_pred HHhCCEEE-EEECCEEEEecCHHHHHhCcc
Confidence 78999996 599999999998887766543
No 225
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.5e-36 Score=276.29 Aligned_cols=188 Identities=13% Similarity=0.149 Sum_probs=148.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++||++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (230)
T TIGR03410 1 LEVSNLNVYYGQS---HI---LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITK--- 66 (230)
T ss_pred CEEEeEEEEeCCe---EE---ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccC-CCcceeEEEE
Q 018083 166 LQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVN 242 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~~~~ 242 (361)
....+ .+..++|++|++.+++. ++.+|+.++..... ....+.+.++++.++ +.+
T Consensus 67 ------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~~l~~~~~l~~------- 123 (230)
T TIGR03410 67 ------------LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP----RRSRKIPDEIYELFPVLKE------- 123 (230)
T ss_pred ------------CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC----cchHHHHHHHHHHHHhHHH-------
Confidence 11111 13457889999887776 89999876543211 111233455566665 444
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
..++++.+||||||||++||||| ||||++||. ++|||++|| +
T Consensus 124 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 124 ----------MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred ----------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 35888999999999999999999 999999653 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCcccc
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++..+||+++ ++++|++++.|+++++
T Consensus 194 ~~~~~~d~v~-~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 194 FARELADRYY-VMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHc
Confidence 6778999996 5999999999988765
No 226
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=279.84 Aligned_cols=212 Identities=17% Similarity=0.174 Sum_probs=159.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
-+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++.....|++|+|.++|+++...
T Consensus 6 ~~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~-- 77 (251)
T PRK14244 6 ASVKNLNLWYGSK---QI---LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV-- 77 (251)
T ss_pred EEeeeEEEEECCe---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhc--
Confidence 4689999999752 45 666999999999999999999999999999999975110014699999999876310
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec-CCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.+++.++.+|+.++...... ......++.+.++++.+++.+.+.
T Consensus 78 -----------~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------ 140 (251)
T PRK14244 78 -----------DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG------ 140 (251)
T ss_pred -----------ccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh------
Confidence 00111234567889999877767888998765321111 011234456778889999865210
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
..+++.+.+||||||||++||||| ||||++||. ++|||++|| .++..
T Consensus 141 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 141 -------DRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred -------hHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 024678899999999999999999 999999753 799999999 46778
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
+|||++ +|++|+++..|++++++..+.++++
T Consensus 214 ~~d~i~-~l~~G~i~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14244 214 VSDRVA-FFQSGRIVEYNTTQEIFKNPQSSKT 244 (251)
T ss_pred hcCEEE-EEECCEEEEeCCHHHHhcCCCChHH
Confidence 999996 5999999999999999887765543
No 227
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=281.87 Aligned_cols=216 Identities=17% Similarity=0.177 Sum_probs=163.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.-..
T Consensus 7 ~~~~i~~~~~~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~ 75 (257)
T PRK14246 7 AEDVFNISRLYLYINDK---AI---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLY 75 (257)
T ss_pred hhhheeeeeEEEecCCc---ee---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEE
Confidence 56789999999999763 45 666999999999999999999999999999999999 99988877764211
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.+ ..+. .......+..++|++|++.+++. ++.+|+.++..........+.++++.++++.+++.+.+
T Consensus 76 ~g-----~~~~----~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 143 (257)
T PRK14246 76 FG-----KDIF----QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV--- 143 (257)
T ss_pred CC-----cccc----cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc---
Confidence 00 0000 11112345668889999888775 89999987643211112234456677888889986411
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--C
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 294 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~ 294 (361)
...+++.+..||+|||||++||||| ||||++||. +.|||++|| .
T Consensus 144 ----------~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~ 213 (257)
T PRK14246 144 ----------YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ 213 (257)
T ss_pred ----------hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHH
Confidence 0034778999999999999999999 999999753 689999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
.+..+||+++ +|++|++++.|++++++..|.+++++
T Consensus 214 ~~~~~~d~v~-~l~~g~i~~~g~~~~~~~~~~~~~~~ 249 (257)
T PRK14246 214 QVARVADYVA-FLYNGELVEWGSSNEIFTSPKNELTE 249 (257)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhCCCcHHHH
Confidence 6678999996 59999999999999998877655543
No 228
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-35 Score=272.78 Aligned_cols=199 Identities=15% Similarity=0.219 Sum_probs=145.6
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++|++++|++.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~--~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~--- 68 (229)
T cd03254 2 EIEFENVNFSYDEKK--PV---LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIR--- 68 (229)
T ss_pred eEEEEEEEEecCCCC--cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHH---
Confidence 378999999997432 35 666999999999999999999999999999999999 99999999997764
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.++..++.+|+.+.... ....++.++++.+++.......++.
T Consensus 69 ------------~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~- 128 (229)
T cd03254 69 ------------DISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPN-------ATDEEVIEAAKEAGAHDFIMKLPNG- 128 (229)
T ss_pred ------------HcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCC-------CCHHHHHHHHHHhChHHHHHhCccc-
Confidence 11112234567889999888877999999864321 1112233334444433210000000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
-...+++.+.+||||||||++||||| |||+++||. ++|||++|| ..+ .
T Consensus 129 -----~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~ 202 (229)
T cd03254 129 -----YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTI-K 202 (229)
T ss_pred -----ccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-h
Confidence 00023667899999999999999999 999999763 789999999 344 4
Q ss_pred ccchhhHhhhhhhhcCCCCcccccc
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.||+++ +|++|+++..++.++++.
T Consensus 203 ~~d~i~-~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 203 NADKIL-VLDDGKIIEEGTHDELLA 226 (229)
T ss_pred hCCEEE-EEeCCeEEEeCCHHHHHh
Confidence 599996 599999998888766654
No 229
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.6e-35 Score=274.55 Aligned_cols=193 Identities=11% Similarity=0.119 Sum_probs=146.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|+.+. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~---- 67 (237)
T cd03252 1 ITFEHVRFRYKPDG-PVI---LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLA---- 67 (237)
T ss_pred CEEEEEEEecCCCC-ccc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehH----
Confidence 57899999996432 245 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhh-----hhccccccc--CCCccee
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 238 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~ 238 (361)
.......+..+++++|++.++..++.+|+.++.. ........+ .+.++++.+ ++..
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--- 130 (237)
T cd03252 68 -----------LADPAWLRRQVGVVLQENVLFNRSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDT--- 130 (237)
T ss_pred -----------hcCHHHHhhcEEEEcCCchhccchHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccc---
Confidence 1111223456888999988776799999986432 111111111 111222222 3333
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 --------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 196 (237)
T cd03252 131 --------------IVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHR 196 (237)
T ss_pred --------------hhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 34778999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.+ ..||+++ +|++|+++..|++++++..
T Consensus 197 ~~~~-~~~d~v~-~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 197 LSTV-KNADRII-VMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHH-HhCCEEE-EEECCEEEEEcCHHHHHhc
Confidence 344 5699996 5999999999998887654
No 230
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.9e-35 Score=304.21 Aligned_cols=205 Identities=16% Similarity=0.163 Sum_probs=162.4
Q ss_pred hhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 63 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
....|+.++++.+++.... ..+.|+++|++++|+++. .++ |+++||+|++|++++|+||||||||||+|+
T Consensus 292 ~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-~~i---l~~i~l~i~~G~~~~ivG~sGsGKSTL~~l 367 (529)
T TIGR02857 292 AAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRR-APA---LRPVSFTVPPGERVALVGPSGAGKSTLLNL 367 (529)
T ss_pred HHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCC-ccc---ccceeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 3344888888633221111 113589999999997643 145 666999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.++|.++. .+...+.+..+++|+|++.+|..++.+|+.++..
T Consensus 368 l~g~~~-----~~~G~I~~~g~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~------ 421 (529)
T TIGR02857 368 LLGFVD-----PTEGSIAVNGVPLA---------------DADADSWRDQIAWVPQHPFLFAGTIAENIRLARP------ 421 (529)
T ss_pred HhcCCC-----CCCcEEEECCEehh---------------hCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC------
Confidence 999999 99999999999886 3555677888999999999999999999987543
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
...++++.++++.+++.+.+.+.++.+.+++++ ....||||||||++||||| ||||++||.
T Consensus 422 -~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e------~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 422 -DASDAEIRRALERAGLDEFVAALPQGLDTLIGE------GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred -CCCHHHHHHHHHHcCcHHHHHhCcccccchhcc------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 223466778888899887666666666665444 4568999999999999999 999999763
Q ss_pred ------------CccEEEEEc-Cccccccchhh
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
++|+|+||| ....+.||+|+
T Consensus 495 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 495 ALVTEALRALAQGRTVLLVTHRLALAERADRIV 527 (529)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEE
Confidence 799999999 44557799994
No 231
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.3e-35 Score=304.32 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=158.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 8 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~ 76 (510)
T PRK15439 8 APPLLCARSISKQYSGV---EV---LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCA 76 (510)
T ss_pred CCceEEEEeEEEEeCCc---ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECC
Confidence 34579999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. ....+. +..++|++|++.+++. ++.+|+.++... ....++++.++++.+++.+
T Consensus 77 ~---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~---- 132 (510)
T PRK15439 77 R---------------LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-----RQASMQKMKQLLAALGCQL---- 132 (510)
T ss_pred C---------------CCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-----chHHHHHHHHHHHHcCCCc----
Confidence 1 111111 2347889998877766 899999876431 2334567888999999986
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 133 -------------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 199 (510)
T PRK15439 133 -------------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199 (510)
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35889999999999999999999 999999763 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+.+..+||+++ +|++|+++..|+++++..
T Consensus 200 ~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 200 LPEIRQLADRIS-VMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHHhCCEEE-EEECCEEEEecChHHcCH
Confidence 56778999996 599999999998877653
No 232
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.5e-35 Score=271.67 Aligned_cols=190 Identities=9% Similarity=0.070 Sum_probs=149.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~i~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~- 72 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA---KI---LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIS- 72 (225)
T ss_pred CceEEEeccEEeeCCc---ee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcC-
Confidence 3479999999999753 45 666999999999999999999999999999999999 99999999997764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..+++++|++.+++.++.+|+.+...... .....+++.++++.+++.+.
T Consensus 73 --------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~l~~~------ 129 (225)
T PRK10247 73 --------------TLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRN---QQPDPAIFLDDLERFALPDT------ 129 (225)
T ss_pred --------------cCCHHHHHhccEEEecccccccccHHHHHHhHHhhcC---CChHHHHHHHHHHHcCCChH------
Confidence 1111223456788999988777799999876432111 11123456778999999632
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+.++++.+|||||+||++||||| ||||++||. +.|||++|| +
T Consensus 130 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 130 ----------ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 34889999999999999999999 999999653 789999999 3
Q ss_pred ccccccchhhHhh-hhhhhcCCCCcc
Q 018083 295 DLLSLTDRARIRT-YLGELLGIPPAK 319 (361)
Q Consensus 295 ~~~~~aDri~vvl-~~G~iv~~g~~~ 319 (361)
.+ ..||++++ | +++..+++|+++
T Consensus 200 ~~-~~~d~i~~-l~~~~~~~~~~~~~ 223 (225)
T PRK10247 200 EI-NHADKVIT-LQPHAGEMQEARYE 223 (225)
T ss_pred HH-HhCCEEEE-EecccchHhhhhhc
Confidence 44 56999964 7 567777888764
No 233
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2e-35 Score=305.84 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=158.3
Q ss_pred ccccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++|+++|++++|+++ ....+ |+++||+|++||+++|+||||||||||+|+|+|++++....|++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~---l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV---VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceee---eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 3579999999999642 11246 5669999999999999999999999999999999982111127999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecC-CCCcccccchH--HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNIN--MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
... .......+ ..+++++|++. +++. ++.+++.+........+.....+++.++++.+++.+..
T Consensus 80 ~~~------------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 80 HAS------------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred cCC------------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH
Confidence 100 00011112 45888999874 3333 67777664321111223344567788899999997510
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
..+++++.+||||||||++||||| ||||++||. |+|||+|
T Consensus 148 --------------~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v 213 (529)
T PRK15134 148 --------------KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFI 213 (529)
T ss_pred --------------HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 024889999999999999999999 999999753 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|| +.+..+||||+ +|++|+++..|++++++..+.
T Consensus 214 tHd~~~~~~~~dri~-~l~~G~i~~~g~~~~~~~~~~ 249 (529)
T PRK15134 214 THNLSIVRKLADRVA-VMQNGRCVEQNRAATLFSAPT 249 (529)
T ss_pred cCcHHHHHHhcCEEE-EEECCEEEEeCCHHHHhhCCC
Confidence 99 56778999996 599999999999988876554
No 234
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.4e-35 Score=278.25 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=149.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc----ccceeeeccccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p----~~G~I~i~G~~i 160 (361)
+|+++|++++| +. ++ |+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-~~---~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 4 QIELRNIALQA-AQ---PL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEEeCeEEEe-cc---ce---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCeec
Confidence 68999999999 32 35 666999999999999999999999999999999998 7 999999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchH-HH-HH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MI-KL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~-~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.. .. ..+..++|++|++. .+ +. ++.+++.+..... .. ....+++.++++.+++.+..
T Consensus 72 ~~---------------~~--~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~~ 131 (254)
T PRK10418 72 AP---------------CA--LRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-GK--PADDATLTAALEAVGLENAA 131 (254)
T ss_pred cc---------------cc--cccceEEEEecCCccccCccccHHHHHHHHHHHc-CC--ChHHHHHHHHHHHcCCCChh
Confidence 41 00 01234667777753 12 21 4445544322111 11 12235678889999997520
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 291 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIii 291 (361)
.++++.+.+||||||||++||||| ||||++||. |.|||++
T Consensus 132 --------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~ 197 (254)
T PRK10418 132 --------------RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197 (254)
T ss_pred --------------hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 024788999999999999999999 999999652 7899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
|| +++..+|||++ +|++|+++..|++++++..+.++.
T Consensus 198 sH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~~~~~~ 236 (254)
T PRK10418 198 THDMGVVARLADDVA-VMSHGRIVEQGDVETLFNAPKHAV 236 (254)
T ss_pred ecCHHHHHHhCCEEE-EEECCEEEEecCHHHHhhCCCCHH
Confidence 99 46678999996 599999999999998887665443
No 235
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.6e-35 Score=335.86 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=170.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++||+++|+++.. .+ |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.++.
T Consensus 1308 ~I~f~nVsf~Y~~~~~-~v---L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~--- 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP-LV---LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIG--- 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCC-ce---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc---
Confidence 5999999999976532 35 666999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+.+.++|+.+++|+|++.+|..||++||.... +...+++.++++.+++.+.+...++.+
T Consensus 1376 ------------~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--------~~sdeeI~~Al~~a~l~~~I~~lp~Gl 1435 (1560)
T PTZ00243 1376 ------------AYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--------EASSAEVWAALELVGLRERVASESEGI 1435 (1560)
T ss_pred ------------cCCHHHHHhcceEECCCCccccccHHHHhCccc--------CCCHHHHHHHHHHCCChHHHhhCcccc
Confidence 466778899999999999999999999996321 233467888899999987655445555
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc----------CCCceeecC---------------CccEEEEEc-Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------DEPt~~L~~---------------g~tvIiiTH-~~~~~ 298 (361)
.+.|++ ....||||||||++||||| ||||+++|. ++|+|+|+| -....
T Consensus 1436 dt~vge------~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1436 DSRVLE------GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred cccccC------CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 554443 3457999999999999998 999999753 899999999 45556
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
.||+|+ ||++|+|++.|++++++..+.
T Consensus 1510 ~~DrIl-VLd~G~VvE~Gt~~eLl~~~~ 1536 (1560)
T PTZ00243 1510 QYDKII-VMDHGAVAEMGSPRELVMNRQ 1536 (1560)
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCCC
Confidence 799995 699999999999999987644
No 236
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5e-35 Score=280.09 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=154.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
-|+++|++++|+++. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.
T Consensus 2 ~i~~~nls~~~~~~~-~~~---l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~--- 68 (275)
T cd03289 2 QMTVKDLTAKYTEGG-NAV---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWN--- 68 (275)
T ss_pred eEEEEEEEEEeCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhh---
Confidence 378999999996432 245 666999999999999999999999999999999996 4799999998774
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+...+.+..++|++|++.+|+.++.+|+.... ....+++.++++.+++.+
T Consensus 69 ------------~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~--------~~~~~~~~~~l~~~gL~~--------- 119 (275)
T cd03289 69 ------------SVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYG--------KWSDEEIWKVAEEVGLKS--------- 119 (275)
T ss_pred ------------hCCHHHHhhhEEEECCCcccchhhHHHHhhhcc--------CCCHHHHHHHHHHcCCHH---------
Confidence 233445567789999999999889999995211 012345667788899977
Q ss_pred EEEEechhhhhhccCC-----------chhhhhhhhhhhhcc---------CCCceeecC---------------CccEE
Q 018083 245 IFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVV 289 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~-----------LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvI 289 (361)
+.+++|.+ ||||||||++||||| ||||++||. ++|||
T Consensus 120 --------~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii 191 (275)
T cd03289 120 --------VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVI 191 (275)
T ss_pred --------HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34666665 999999999999999 999999753 79999
Q ss_pred EEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 290 VVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 290 iiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+||| ......||||+ +|++|++++.|++++++..+
T Consensus 192 ~isH~~~~i~~~dri~-vl~~G~i~~~g~~~~l~~~~ 227 (275)
T cd03289 192 LSEHRIEAMLECQRFL-VIEENKVRQYDSIQKLLNEK 227 (275)
T ss_pred EEECCHHHHHhCCEEE-EecCCeEeecCCHHHHhhCc
Confidence 9999 23334599996 59999999999999998854
No 237
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=284.64 Aligned_cols=253 Identities=19% Similarity=0.219 Sum_probs=180.1
Q ss_pred cccccccCCCCCCCccccCCCCCC-CCccchhhhhhhhhhhHHHHHHHHhHHHHHhhhccccccccceeeecCcceeecc
Q 018083 26 DIPLLRNNSNNNNNNLSMNSGDDE-GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENV 104 (361)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lei~nl~~~Y~~~~~~~~l 104 (361)
|+.+-.+.++....+.+-..||-. ..|.-|+.. .....++|+++|+++.|++. .+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~i~nl~~~~~~~---~i- 60 (305)
T PRK14264 5 DTAGTADASDGTDPEVETTSGESDEQTRDEWTDY--------------------EFDGDAKLSVEDLDVYYGDD---HA- 60 (305)
T ss_pred ccccccccccCCCccccccccchhhhhhhccccc--------------------ccCCCceEEEEEEEEEeCCe---ee-
Confidence 444445555555555566666643 455566422 11234579999999999763 45
Q ss_pred ccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecC
Q 018083 105 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR 184 (361)
Q Consensus 105 ~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r 184 (361)
|+++||+|++|++++|+||||||||||+++|+|++++..+.|++|+|.++|.++.. ........+
T Consensus 61 --L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~-------------~~~~~~~~~ 125 (305)
T PRK14264 61 --LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ-------------DGVNLVELR 125 (305)
T ss_pred --eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc-------------ccccHHHHh
Confidence 66699999999999999999999999999999998511111589999999987631 001122345
Q ss_pred CCCcccccchHHHHHHHHhccccceeEEe-----------cCC-ChhhhhhhcccccccCCCcceeEEEEEEEEEEechh
Q 018083 185 SLSDDASDNINMIKLWIMEGVRHGELVIR-----------RSD-SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA 252 (361)
Q Consensus 185 ~~i~~v~q~~~l~~~ti~~ni~~~~~~~~-----------~~~-~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~ 252 (361)
..++|++|++.+++.++.+|+.++..... ... ....++++.++++.+++.+.+ ..
T Consensus 126 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------------~~ 192 (305)
T PRK14264 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------------ND 192 (305)
T ss_pred hceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------------hH
Confidence 56889999987777789999987542110 011 122345677788888875311 01
Q ss_pred hhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--CccccccchhhHh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIR 306 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~aDri~vv 306 (361)
.+++++.+||||||||++||||| |||+++||. +.|||++|| +.+..+||+++++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 35788999999999999999999 999999753 679999999 5677899997444
Q ss_pred hhhhhhcCCCCccccccCCCCCCC
Q 018083 307 TYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 307 l~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
|++|+++..|++++++..+.+..+
T Consensus 273 l~~G~i~~~g~~~~~~~~~~~~~~ 296 (305)
T PRK14264 273 LTGGELVEYDDTDKIFENPESQRV 296 (305)
T ss_pred ecCCEEEEeCCHHHHHhCcccHHH
Confidence 899999999999888776654433
No 238
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=279.52 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=161.0
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.++....|++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~---~v---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---QA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECCe---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 4579999999999753 45 66699999999999999999999999999999998721000179999999976531
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. . ........+..++|++|++.+++.++.+|+.++............++++.++++.+++.+.+
T Consensus 88 ~--------~---~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l----- 151 (265)
T PRK14252 88 L--------S---PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV----- 151 (265)
T ss_pred c--------c---cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-----
Confidence 0 0 00111233556788899887776788999986542111111122345666777777764211
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 296 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~ 296 (361)
...+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 152 --------~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~ 223 (265)
T PRK14252 152 --------KDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA 223 (265)
T ss_pred --------hHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH
Confidence 0134788999999999999999999 999999753 689999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCCCCCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 331 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~ 331 (361)
..+|||++ +|++|++++.|++++++..+.++++.
T Consensus 224 ~~~~d~i~-~l~~G~i~~~g~~~~~~~~~~~~~~~ 257 (265)
T PRK14252 224 ARVSDYTA-YMYMGELIEFGATDTIFIKPKNKQTE 257 (265)
T ss_pred HHhCCEEE-EEECCEEEEeCCHHHHHhCCCCHHHH
Confidence 78999996 59999999999999988776655543
No 239
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-35 Score=272.00 Aligned_cols=193 Identities=16% Similarity=0.243 Sum_probs=146.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++.. ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~---- 67 (234)
T cd03251 1 VEFKNVTFRYPGDG-PPV---LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVR---- 67 (234)
T ss_pred CEEEEEEEEeCCCC-ccc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhh----
Confidence 57899999997532 135 666999999999999999999999999999999999 99999999997653
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhh-----hhccccccc--CCCccee
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN-----RMRCKAHKI--GCEPSVI 238 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~ 238 (361)
.......+..+++++|++.+++.++.+|+.+.... .......+ .+.++++.+ ++..
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~--- 130 (234)
T cd03251 68 -----------DYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDT--- 130 (234)
T ss_pred -----------hCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcce---
Confidence 11112234567888999887777999999875431 11111111 122233333 4443
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH- 293 (361)
.+++++.+||+|||||++||||| ||||++||. +.|||++||
T Consensus 131 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 196 (234)
T cd03251 131 --------------VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHR 196 (234)
T ss_pred --------------eeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 23678899999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.++. .||+++ +|++|+++..+++++++..
T Consensus 197 ~~~~~-~~d~v~-~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 197 LSTIE-NADRIV-VLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHh-hCCEEE-EecCCeEeeeCCHHHHHHc
Confidence 4554 499996 5999999999988777654
No 240
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=6.4e-35 Score=268.80 Aligned_cols=193 Identities=17% Similarity=0.213 Sum_probs=141.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++.. ..+ |+++||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~---- 69 (220)
T cd03245 3 IEFRNVSFSYPNQE-IPA---LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIR---- 69 (220)
T ss_pred EEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhH----
Confidence 78999999996532 245 666999999999999999999999999999999999 99999999997753
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..+++++|++.+++.++.+|+.+.... ...+.+.++++.+++.+.....++.+-
T Consensus 70 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 70 -----------QLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL-------ADDERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred -----------HCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCC-------CCHHHHHHHHHHcCcHHHHHhcccccc
Confidence 11111234467888999877767899998764321 112345566777777652200000000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Ccccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~a 300 (361)
. .....+.+||||||||++||||| ||||++||. ++|||++|| .....+|
T Consensus 132 ~------~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 132 L------QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred c------eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 0 00123469999999999999999 999999753 579999999 2334799
Q ss_pred chhhHhhhhhhhcCCC
Q 018083 301 DRARIRTYLGELLGIP 316 (361)
Q Consensus 301 Dri~vvl~~G~iv~~g 316 (361)
|+++ +|++|++++.|
T Consensus 206 d~v~-~l~~g~i~~~~ 220 (220)
T cd03245 206 DRII-VMDSGRIVADG 220 (220)
T ss_pred CEEE-EEeCCeEeecC
Confidence 9996 59999987643
No 241
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-35 Score=279.63 Aligned_cols=195 Identities=12% Similarity=0.049 Sum_probs=152.3
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc--------cceeeec
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 156 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~--------~G~I~i~ 156 (361)
||+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~~---~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRHR---AI---LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECCE---eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 48899999999653 45 666999999999999999999999999999999998 87 8999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHH-HHHHHHhccccceeEEe---cCCChhhhhhhcccccccC
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-~~~ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~g 232 (361)
|.++. .......+..+++++|++.+ +..++.+|+.++..... ........+.+.++++.++
T Consensus 70 g~~~~---------------~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (272)
T PRK13547 70 GEPLA---------------AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134 (272)
T ss_pred CEEcc---------------cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC
Confidence 98764 11112223446788888653 34488899877532110 1111233456778899999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------------CCCceeecC----------
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------------NCPYLSFRD---------- 284 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------------DEPt~~L~~---------- 284 (361)
+.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 135 l~~-----------------~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l 197 (272)
T PRK13547 135 ATA-----------------LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV 197 (272)
T ss_pred cHh-----------------hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 987 45889999999999999999886 799999642
Q ss_pred -------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 -------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 -------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|||++|| +++..+||+++ +|++|++++.|++++++.
T Consensus 198 ~~~~~~~~~tviiisH~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 198 RRLARDWNLGVLAIVHDPNLAARHADRIA-MLADGAIVAHGAPADVLT 244 (272)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHhCCEEE-EEECCeEEEecCHHHHcC
Confidence 789999999 46678999996 599999999998877754
No 242
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-34 Score=270.67 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=144.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|+++.|++....++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~i~~l~~~~~~~~~~~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~---- 68 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI---LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIR---- 68 (238)
T ss_pred CeEEEEEEecCCCCCccc---eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehh----
Confidence 468999999965321245 566999999999999999999999999999999999 99999999997753
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..++|++|++.++..++.+|+.++... .. .+.+.+.++..++.+.......
T Consensus 69 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~--- 127 (238)
T cd03249 69 -----------DLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPD---AT----DEEVEEAAKKANIHDFIMSLPD--- 127 (238)
T ss_pred -----------hcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCC---CC----HHHHHHHHHHcChHHHHHhhcc---
Confidence 11112234458889999888777999999875431 01 1112222222222110000000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec---------------CCccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---------------DDKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~---------------~g~tvIiiTH--~~~~~~ 299 (361)
+-...+++.+.+||||||||++||||| |||+++|| .|+|||++|| +++. +
T Consensus 128 ---~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~ 203 (238)
T cd03249 128 ---GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-N 203 (238)
T ss_pred ---ccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h
Confidence 000023677899999999999999999 99999976 2789999999 4554 8
Q ss_pred cchhhHhhhhhhhcCCCCccccccC
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
||+++ +|++|+++..++.+++...
T Consensus 204 ~d~v~-~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 204 ADLIA-VLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred CCEEE-EEECCEEEEeCCHHHHhhc
Confidence 99996 5999999998887766543
No 243
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=276.04 Aligned_cols=192 Identities=15% Similarity=0.224 Sum_probs=147.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~~~~--~i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~-- 73 (272)
T PRK15056 6 GIVVNDVTVTWRNGH--TA---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTRQ-- 73 (272)
T ss_pred eEEEEeEEEEecCCc--EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhHH--
Confidence 689999999996432 35 667999999999999999999999999999999999 999999999977530
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHH---HHHHHHhccccceeEE-e--cCCChhhhhhhcccccccCCCccee
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM---IKLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l---~~~ti~~ni~~~~~~~-~--~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. ..+..++|++|++.+ +..++.+++.++.... . .......++++.++++.+++.+
T Consensus 74 -------------~---~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--- 134 (272)
T PRK15056 74 -------------A---LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE--- 134 (272)
T ss_pred -------------h---hccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh---
Confidence 0 011236677777543 1224566665432110 0 0112233456777889999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 135 --------------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH 200 (272)
T PRK15056 135 --------------FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200 (272)
T ss_pred --------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45889999999999999999999 999999753 789999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+.+..+||++ +++ +|+++..|++++++.
T Consensus 201 ~~~~~~~~~d~v-~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 201 NLGSVTEFCDYT-VMV-KGTVLASGPTETTFT 230 (272)
T ss_pred CHHHHHHhCCEE-EEE-CCEEEeecCHHhccC
Confidence 4677999999 435 899999999888764
No 244
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-35 Score=277.28 Aligned_cols=211 Identities=19% Similarity=0.184 Sum_probs=161.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..+.+.+++++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|++++....|++|+|.++|.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 5 APIVMDCKLDKIFYGNF---MA---VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CCceEEEEeEEEEeCCE---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 34568999999999753 45 6669999999999999999999999999999999981100027999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. .......+..+++++|++.++..++.+|+.++..... ......+++.++++.+++.+.+.
T Consensus 79 ~~-------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~--- 140 (261)
T PRK14263 79 GK-------------GVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNR--YKGDLGDRVKHALQGAALWDEVK--- 140 (261)
T ss_pred cc-------------ccchHhhhhceEEEecCCccccccHHHHHHHHHhhcC--chHHHHHHHHHHHHHcCCchhhh---
Confidence 10 0111123456888999988776689999987643221 11234467788889998864220
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
...++++.+|||||+||++||||| ||||++||. +.|||++|| +.
T Consensus 141 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 210 (261)
T PRK14263 141 ----------DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210 (261)
T ss_pred ----------hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 023678889999999999999999 999999753 789999999 56
Q ss_pred cccccchhhHhhh--------hhhhcCCCCccccccCCCC
Q 018083 296 LLSLTDRARIRTY--------LGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 296 ~~~~aDri~vvl~--------~G~iv~~g~~~~i~~~~~~ 327 (361)
+..+|||++ +|+ +|++++.|++++++..+.+
T Consensus 211 i~~~~d~v~-~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 249 (261)
T PRK14263 211 AIRVADTTA-FFSVDISQGTRTGYLVEMGPTAQIFQNPRE 249 (261)
T ss_pred HHHhCCEEE-EEecccccccCCceEEEeCCHHHHHhCCCc
Confidence 779999996 585 8999999999998876654
No 245
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.8e-34 Score=265.83 Aligned_cols=187 Identities=12% Similarity=0.162 Sum_probs=144.2
Q ss_pred hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 81 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 81 ~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
...++|+++|++++|++.....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~ 78 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLV---LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPI 78 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCch
Confidence 35678999999999975311245 566999999999999999999999999999999999 9999999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChh-----hhhhhccccccc--CC
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GC 233 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~-----~~~~v~~~l~~~--gl 233 (361)
. .......+..+++++|++.+++.++.+|+.++.... .... .+..+.++++.+ |+
T Consensus 79 ~---------------~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl 140 (226)
T cd03248 79 S---------------QYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGY 140 (226)
T ss_pred H---------------HcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccc
Confidence 4 111122345678899999888789999998754311 1111 111234556666 66
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVV 289 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvI 289 (361)
.+ .+++++.+||||||||++||||| ||||++||. +.|+|
T Consensus 141 ~~-----------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii 203 (226)
T cd03248 141 DT-----------------EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203 (226)
T ss_pred cc-----------------hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 65 34788999999999999999999 999999753 68999
Q ss_pred EEEc--CccccccchhhHhhhhhhh
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~i 312 (361)
++|| .++ ..||+++ +|++|++
T Consensus 204 ~~sh~~~~~-~~~d~i~-~l~~g~i 226 (226)
T cd03248 204 VIAHRLSTV-ERADQIL-VLDGGRI 226 (226)
T ss_pred EEECCHHHH-HhCCEEE-EecCCcC
Confidence 9999 455 4599996 5998864
No 246
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.8e-35 Score=268.51 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=148.7
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.|+++|+++.|+++. ...+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~- 71 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQV---LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYG- 71 (220)
T ss_pred CEEEEEEEEEccCCCcceeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHh-
Confidence 378999999997531 1245 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. .......+..+++++|++.+++. ++.+|+.++.............+.+.++++.+++.+
T Consensus 72 -------~~----~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 133 (220)
T TIGR02982 72 -------AS----EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD------- 133 (220)
T ss_pred -------cC----HhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-------
Confidence 00 00011234568889999988875 888998865432111223344567888999999977
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
..++++.+||+|||||++||||| |||+++||. ++|||++|| ..
T Consensus 134 ----------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 134 ----------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred ----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45889999999999999999999 999999642 799999999 34
Q ss_pred cccccchhhHhhhhhhhc
Q 018083 296 LLSLTDRARIRTYLGELL 313 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv 313 (361)
...+||+++ +|++|+++
T Consensus 204 ~~~~~d~v~-~l~~g~~~ 220 (220)
T TIGR02982 204 ILDVADRIV-HMEDGKLL 220 (220)
T ss_pred HHhhCCEEE-EEECCEEC
Confidence 568999996 59998753
No 247
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-34 Score=268.60 Aligned_cols=198 Identities=12% Similarity=0.195 Sum_probs=143.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~--~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~---- 66 (236)
T cd03253 1 IEFENVTFAYDPGR--PV---LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIR---- 66 (236)
T ss_pred CEEEEEEEEeCCCC--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhh----
Confidence 46899999996432 35 666999999999999999999999999999999999 99999999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..++|++|++.+++.++.+|+.++... .... .+..+++.+++.+.+.....
T Consensus 67 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~---~~~~----~~~~~~~~~~l~~~~~~l~~--- 125 (236)
T cd03253 67 -----------EVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD---ATDE----EVIEAAKAAQIHDKIMRFPD--- 125 (236)
T ss_pred -----------hCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCC---CCHH----HHHHHHHHcCcHHHHHhccc---
Confidence 11122234557889999888877999999875431 1111 12222222222210000000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~ 299 (361)
.-...+++.+.+||||||||++||||| |||+++||. ++|||++|| +.+ ..
T Consensus 126 ---~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~-~~ 201 (236)
T cd03253 126 ---GYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VN 201 (236)
T ss_pred ---cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-Hh
Confidence 000023667889999999999999999 999999753 789999999 344 45
Q ss_pred cchhhHhhhhhhhcCCCCcccccc
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
||+++ +|++|+++..|+.+++..
T Consensus 202 ~d~~~-~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 202 ADKII-VLKDGRIVERGTHEELLA 224 (236)
T ss_pred CCEEE-EEECCEEEeeCCHHHHhh
Confidence 99996 599999999888776654
No 248
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2e-34 Score=287.70 Aligned_cols=192 Identities=14% Similarity=0.198 Sum_probs=164.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++.+++++++|.|++ +.|.++ |||+|++||++||+|+||||||||+++|.|+|+ |++|+|+++|+.+..
T Consensus 2 ~~~l~~~~itK~f~~---~~And~---V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~ 70 (501)
T COG3845 2 EPALEMRGITKRFPG---VVANDD---VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRI 70 (501)
T ss_pred CceEEEeccEEEcCC---EEecCc---eeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEecc
Confidence 457899999999984 578555 999999999999999999999999999999999 999999999998752
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeE--EecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. -.....+..|++|+|++.+++. |+.+||.++... ....+....++++.++.++.||+=+.
T Consensus 71 ~--------------sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-- 134 (501)
T COG3845 71 K--------------SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-- 134 (501)
T ss_pred C--------------CHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc--
Confidence 1 1122345569999999999988 999999998863 23456677889999999999997532
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiTH- 293 (361)
+.+..+||-|+||||.|-+|| ||||+-|. .|+|||+|||
T Consensus 135 ---------------~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK 199 (501)
T COG3845 135 ---------------DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199 (501)
T ss_pred ---------------cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 889999999999999999999 99999863 3999999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
+++.++|||+.| |..|+++...+
T Consensus 200 L~Ev~~iaDrvTV-LR~Gkvvgt~~ 223 (501)
T COG3845 200 LKEVMAIADRVTV-LRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhhCeeEE-EeCCeEEeeec
Confidence 899999999975 99999877654
No 249
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=296.30 Aligned_cols=190 Identities=14% Similarity=0.202 Sum_probs=152.8
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeE
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 167 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 167 (361)
++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~~nl~~~~~~~---~i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~----- 64 (491)
T PRK10982 1 MSNISKSFPGV---KA---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDF----- 64 (491)
T ss_pred CCceEEEeCCE---Ee---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCC-----
Confidence 47899999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eeeecCCCcceee-eecCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 168 EYTIPRGSNSFSL-YDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 168 ~~~i~~~~~~~~~-~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
... ...+..+++++|++.+++. ++.+|+.++...... .+.....+++.++++.+++..
T Consensus 65 ----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 126 (491)
T PRK10982 65 ----------KSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-------- 126 (491)
T ss_pred ----------CCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC--------
Confidence 000 1123457889998876665 899999876421111 122334457788899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 127 ---------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~ 197 (491)
T PRK10982 127 ---------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEI 197 (491)
T ss_pred ---------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 34888999999999999999999 999999763 789999999 567
Q ss_pred ccccchhhHhhhhhhhcCCCCcccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
..+||+++ +|++|+++..++++++
T Consensus 198 ~~~~d~i~-~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 198 FQLCDEIT-ILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCEEE-EEECCEEEeecChhhC
Confidence 78999996 5999999999988765
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.9e-34 Score=296.85 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=154.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~---~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~ 70 (501)
T PRK11288 2 SPYLSFDGIGKTFPGV---KA---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRF 70 (501)
T ss_pred CceEEEeeeEEEECCE---EE---EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC
Confidence 3589999999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE--ecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
. . .....+..++|++|++.+++. ++.+|+.++.... ...+....++++.++++.+++.+
T Consensus 71 ~-------------~-~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 132 (501)
T PRK11288 71 A-------------S-TTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI---- 132 (501)
T ss_pred C-------------C-HHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC----
Confidence 0 0 001124568899999887776 8999998764311 11122344567888999999976
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
..++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 133 -------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd 199 (501)
T PRK11288 133 -------------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR 199 (501)
T ss_pred -------------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34889999999999999999999 999999753 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
+.+..+|||++ +|++|+++..++.
T Consensus 200 ~~~~~~~~d~i~-~l~~G~i~~~~~~ 224 (501)
T PRK11288 200 MEEIFALCDAIT-VFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCEEE-EEECCEEEeecCc
Confidence 56778999996 5999999876543
No 251
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.98 E-value=1.5e-34 Score=267.29 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=145.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~--- 66 (223)
T TIGR03740 1 LETKNLSKRFGKQ---TA---VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTR--- 66 (223)
T ss_pred CEEEeEEEEECCE---EE---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999976530
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. . +..+++++|++.+++. ++.+|+.+..... . ...+++.++++.+++.+
T Consensus 67 ------------~---~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~-~----~~~~~~~~~l~~~~l~~--------- 116 (223)
T TIGR03740 67 ------------K---D-LHKIGSLIESPPLYENLTARENLKVHTTLL-G----LPDSRIDEVLNIVDLTN--------- 116 (223)
T ss_pred ------------c---c-cccEEEEcCCCCccccCCHHHHHHHHHHHc-C----CCHHHHHHHHHHcCCcH---------
Confidence 0 0 1246677777766664 7888886543211 1 11346777889999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
.+++.+.+|||||+||++||||| |||+++||. +.|||++|| +++.
T Consensus 117 --------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 117 --------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45889999999999999999999 999999753 789999999 4667
Q ss_pred cccchhhHhhhhhhhcCCCCcc
Q 018083 298 SLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~ 319 (361)
.+|||++ +|++|+++..|++.
T Consensus 189 ~~~d~i~-~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 189 QLADHIG-IISEGVLGYQGKIN 209 (223)
T ss_pred HhcCEEE-EEeCCEEEEecChh
Confidence 8999996 59999999888764
No 252
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=2.3e-34 Score=295.12 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=147.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~-- 69 (490)
T PRK10938 3 SLQISQGTFRLSDT---KT---LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITR-- 69 (490)
T ss_pred eEEEEeEEEEcCCe---ee---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCccccc--
Confidence 69999999999753 45 666999999999999999999999999999999999 999999998866530
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHH--H-------HHHHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINM--I-------KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l--~-------~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
....+.+..+++++|++.. + ..++.+++.++ ...++++.++++.+++.+
T Consensus 70 -------------~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~ 127 (490)
T PRK10938 70 -------------LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITA 127 (490)
T ss_pred -------------CCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHh
Confidence 1111123346677776432 1 12455554321 123456788899999987
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEE
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIi 290 (361)
++++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 128 -----------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 190 (490)
T PRK10938 128 -----------------LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190 (490)
T ss_pred -----------------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 45899999999999999999999 999999763 789999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+|| +.+..+||+++ +|++|+++..|++++++..
T Consensus 191 ~tH~~~~~~~~~d~v~-~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 191 VLNRFDEIPDFVQFAG-VLADCTLAETGEREEILQQ 225 (490)
T ss_pred EeCCHHHHHhhCCEEE-EEECCEEEEeCCHHHHhcc
Confidence 999 57789999996 5999999999988777653
No 253
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.98 E-value=1.4e-34 Score=327.91 Aligned_cols=220 Identities=11% Similarity=0.086 Sum_probs=163.6
Q ss_pred hhhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 61 QRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
.+.+..|+.++++..++.... ....|+++||+++|++....++ |+++||+|++|+++||+||||||||||
T Consensus 351 a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTL 427 (1466)
T PTZ00265 351 SLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI---YKDLNFTLTEGKTYAFVGESGCGKSTI 427 (1466)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce---eccceEEEcCCCEEEEECCCCCCHHHH
Confidence 344455999998765543211 1125899999999975422346 555999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeec-ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 134 VNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~-G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
+++|+|+++ |++|+|+++ |.++. .+....+|..+++|+|++.+|+.++.+||.++....
T Consensus 428 l~lL~gl~~-----p~~G~I~i~~g~~i~---------------~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~ 487 (1466)
T PTZ00265 428 LKLIERLYD-----PTEGDIIINDSHNLK---------------DINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSL 487 (1466)
T ss_pred HHHHHHhcc-----CCCCeEEEeCCcchh---------------hCCHHHHHHhccEecccccchhccHHHHHHhcCCCc
Confidence 999999999 999999994 67664 234445678899999999999999999999874210
Q ss_pred ec--------------------------------------------------CCChhhhhhhcccccccCCCcceeEEEE
Q 018083 213 RR--------------------------------------------------SDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 213 ~~--------------------------------------------------~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. .......+++.++++.+++++.+.+.++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~ 567 (1466)
T PTZ00265 488 KDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPD 567 (1466)
T ss_pred cccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCcc
Confidence 00 0001223567778888888764433334
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
.+.+.| .+.+.+||||||||++||||| ||||++||. |+|+|+||| ..
T Consensus 568 g~dT~v------g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls 641 (1466)
T PTZ00265 568 KYETLV------GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS 641 (1466)
T ss_pred ccCcee------CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 444433 445778999999999999999 999999652 689999999 33
Q ss_pred cccccchhhHhhhhh
Q 018083 296 LLSLTDRARIRTYLG 310 (361)
Q Consensus 296 ~~~~aDri~vvl~~G 310 (361)
..+.||+|+ +|++|
T Consensus 642 ~i~~aD~Ii-vl~~g 655 (1466)
T PTZ00265 642 TIRYANTIF-VLSNR 655 (1466)
T ss_pred HHHhCCEEE-EEeCC
Confidence 447899995 59886
No 254
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.3e-34 Score=266.06 Aligned_cols=184 Identities=16% Similarity=0.154 Sum_probs=143.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
+.+ +|+++|++. .+ + +||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~~~-~l~~~~~~~---~~--~---vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 65 (214)
T cd03297 2 LCV-DIEKRLPDF---TL--K---IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSR- 65 (214)
T ss_pred cee-eeeEecCCe---ee--C---ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeccccc-
Confidence 445 899999763 22 5 9999999 9999999999999999999999999 99999999997763100
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. .......+..+++++|++.+++. ++.+|+.++.... .....++++.++++.+++.+
T Consensus 66 -~---------~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 123 (214)
T cd03297 66 -K---------KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDH--------- 123 (214)
T ss_pred -c---------hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHh---------
Confidence 0 00111234567888999877765 8889987653211 12234456788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++|| +++
T Consensus 124 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 124 --------LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred --------HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 45889999999999999999999 999999652 789999999 467
Q ss_pred ccccchhhHhhhhhhhcCCC
Q 018083 297 LSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g 316 (361)
..+||+++ +|++|++++.|
T Consensus 196 ~~~~d~i~-~l~~G~i~~~g 214 (214)
T cd03297 196 EYLADRIV-VMEDGRLQYIG 214 (214)
T ss_pred HHhcCEEE-EEECCEEEecC
Confidence 78999996 59999987654
No 255
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.98 E-value=2.2e-34 Score=268.08 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=138.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.. ... .
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---------------~~~-----~ 55 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITE---------------PGP-----D 55 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC---------------CCh-----h
Confidence 355999999999999999999999999999999999 999999999987641 000 1
Q ss_pred CcccccchHHHHH-HHHhccccceeE-EecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~-~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
.++++|++.+++. ++.+|+.++... ....+....++++.++++.+++.+ .+++++.+||||
T Consensus 56 ~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG 118 (230)
T TIGR01184 56 RMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE-----------------AADKRPGQLSGG 118 (230)
T ss_pred heEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHH-----------------HHcCChhhCCHH
Confidence 2567888777664 888888765321 111222344556788899999986 458899999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g 316 (361)
||||++||||| ||||++||. ++|||++|| +++..+||+++ +|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~-~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVV-MLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE-EEeCCcEeccc
Confidence 99999999999 999999653 789999999 56778999996 59999999999
Q ss_pred Ccccc
Q 018083 317 PAKQI 321 (361)
Q Consensus 317 ~~~~i 321 (361)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 87666
No 256
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.98 E-value=1.1e-33 Score=294.47 Aligned_cols=187 Identities=11% Similarity=0.108 Sum_probs=149.4
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.|+++|++++|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~---l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~- 407 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFA---LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVS- 407 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCce---eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC-
Confidence 589999999997531 1135 566999999999999999999999999999999999 99999999998876
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.+...+.+..+++|+|++.+|..++.+|.. +...++++.++++.+++.+.+...++
T Consensus 408 --------------~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 408 --------------ADSRDDYRDLFSAIFADFHLFDDLIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred --------------CCCHHHHHhhCcEEccChhhhhhhhhcccc----------cchhHHHHHHHHHHcCCchhhccccc
Confidence 344455677899999999999999888742 12345667788999999874422111
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
.+ .....||||||||++||||| ||||++||. ++|+|+||| ..
T Consensus 464 g~-----------~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 464 GF-----------STTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred cc-----------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 11 11257999999999999998 999999642 799999999 45
Q ss_pred cccccchhhHhhhhhhhcCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g 316 (361)
....||+|+ +|++|++++.-
T Consensus 533 ~~~~~d~i~-~l~~G~i~~~~ 552 (555)
T TIGR01194 533 YFELADQII-KLAAGCIVKDT 552 (555)
T ss_pred HHHhCCEEE-EEECCEEEEec
Confidence 567899995 69999998653
No 257
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.98 E-value=1.1e-33 Score=293.99 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=145.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.++++|++|+|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 322 ~i~~~~v~f~y~~~~--~~---l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~--- 388 (547)
T PRK10522 322 TLELRNVTFAYQDNG--FS---VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVT--- 388 (547)
T ss_pred eEEEEEEEEEeCCCC--eE---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECC---
Confidence 589999999997543 35 666999999999999999999999999999999999 99999999998875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+...+.+..+++|+|++.+|..++.+| . .....+++.++++.+++.....
T Consensus 389 ------------~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~----------~~~~~~~~~~~~~~~~l~~~~~------ 439 (547)
T PRK10522 389 ------------AEQPEDYRKLFSAVFTDFHLFDQLLGPE-G----------KPANPALVEKWLERLKMAHKLE------ 439 (547)
T ss_pred ------------CCCHHHHhhheEEEecChhHHHHhhccc-c----------CchHHHHHHHHHHHcCCchhhh------
Confidence 3344456778999999999999998776 1 1223455667788888876320
Q ss_pred EEEEechhhhhh--ccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-Cc
Q 018083 245 IFVVDGLAVLKS--MEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 295 (361)
Q Consensus 245 ~~vv~~~~~~~~--~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-~~ 295 (361)
..+. ....||||||||++||||+ ||||++||. ++|+|+||| ..
T Consensus 440 --------~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~ 511 (547)
T PRK10522 440 --------LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH 511 (547)
T ss_pred --------ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH
Confidence 0011 1458999999999999998 999999642 689999999 55
Q ss_pred cccccchhhHhhhhhhhcCC
Q 018083 296 LLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~ 315 (361)
..+.||+|+ +|++|++++.
T Consensus 512 ~~~~~d~i~-~l~~G~i~e~ 530 (547)
T PRK10522 512 YFIHADRLL-EMRNGQLSEL 530 (547)
T ss_pred HHHhCCEEE-EEECCEEEEe
Confidence 667899995 6999999876
No 258
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=4.3e-34 Score=293.86 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=153.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc--ccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i~~ 162 (361)
+|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~~~---~i---l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-----~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 1 LLEMKGIVKTFGGV---KA---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-----HGTWDGEIYWSGSPLKA 69 (500)
T ss_pred CEEEEeEEEEeCCe---Ee---ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECCC
Confidence 47899999999752 46 566999999999999999999999999999999998 6 79999999987641
Q ss_pred ceEeEeeeecCCCcceeee-ecCCCCcccccchHHHHH-HHHhccccceeEEe---cCCChhhhhhhcccccccCCCcce
Q 018083 163 TYFLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL-WIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~---~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.... ..+..++|++|++.+++. ++.+|+.++..... ....+...+++.++++.+++.+..
T Consensus 70 ---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 134 (500)
T TIGR02633 70 ---------------SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN 134 (500)
T ss_pred ---------------CCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc
Confidence 1111 123457889999877665 88899987643210 112233456778889999997621
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiT 292 (361)
.++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 135 ----------------~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiit 198 (500)
T TIGR02633 135 ----------------VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198 (500)
T ss_pred ----------------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 2567899999999999999999 999999763 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
| +.+..+||+++ +|++|+++..++++++
T Consensus 199 Hd~~~~~~~~d~i~-~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 199 HKLNEVKAVCDTIC-VIRDGQHVATKDMSTM 228 (500)
T ss_pred CcHHHHHHhCCEEE-EEeCCeEeeecCcccC
Confidence 9 57778999996 5999999998877654
No 259
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3.7e-34 Score=264.45 Aligned_cols=190 Identities=12% Similarity=0.189 Sum_probs=166.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
++++++|+++|++. .|+++ +||++++|++++++|||||||||++|+|.|++. |++|.|.++|.++.
T Consensus 2 ~L~ie~vtK~Fg~k---~av~~---isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~--- 67 (300)
T COG4152 2 ALEIEGVTKSFGDK---KAVDN---ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLS--- 67 (300)
T ss_pred ceEEecchhccCce---eeecc---eeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchh---
Confidence 58999999999874 67555 999999999999999999999999999999999 99999999998875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+.....|||.|+.--+++. ++.+.+.|-.. ..++++.+.++++..||+++++...
T Consensus 68 ----------------~~~~~rIGyLPEERGLy~k~tv~dql~yla~-LkGm~~~e~~~~~~~wLer~~i~~~------- 123 (300)
T COG4152 68 ----------------QEIKNRIGYLPEERGLYPKMTVEDQLKYLAE-LKGMPKAEIQKKLQAWLERLEIVGK------- 123 (300)
T ss_pred ----------------hhhhhhcccChhhhccCccCcHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhcccccc-------
Confidence 1233468888888888777 88888877443 2356788999999999999999874
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
..+++.+||.|++|++.+..|+ |||+||||+ |.|||++|| ..+
T Consensus 124 ----------~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 124 ----------KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred ----------ccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH
Confidence 4889999999999999999987 999999875 999999999 789
Q ss_pred ccccchhhHhhhhhhhcCCCCcccccc
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.++||++++ |++|+.|-.|+.+++-.
T Consensus 194 EeLCD~llm-L~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 194 EELCDRLLM-LKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHhhhhhe-ecCCceEEeccHHHHHH
Confidence 999999965 99999999999987755
No 260
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.98 E-value=5.5e-34 Score=267.93 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=143.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeeccccc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i 160 (361)
.++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+ ++ |++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~~ 73 (252)
T CHL00131 5 KPILEIKNLHASVNEN---EI---LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGESI 73 (252)
T ss_pred CceEEEEeEEEEeCCE---Ee---eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEEc
Confidence 4579999999999753 45 6669999999999999999999999999999998 56 8999999999876
Q ss_pred CcceEeEeeeecCCCcceeeeecCC-CCcccccchHHHHH-HHHhccccceeEEe---c---CCChhhhhhhcccccccC
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKL-WIMEGVRHGELVIR---R---SDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~-~i~~v~q~~~l~~~-ti~~ni~~~~~~~~---~---~~~~~~~~~v~~~l~~~g 232 (361)
.. ......+. .+++++|++.+++. ++.+++.+...... . ....+..+++.++++.++
T Consensus 74 ~~---------------~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (252)
T CHL00131 74 LD---------------LEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138 (252)
T ss_pred cc---------------CChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcC
Confidence 41 11111111 24556777655544 55566544321000 0 011123456677889999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
+.+. .+++.+. +|||||+||++||||| ||||++||. +.
T Consensus 139 l~~~----------------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 202 (252)
T CHL00131 139 MDPS----------------FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN 202 (252)
T ss_pred Cchh----------------hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 9732 2467776 5999999999999999 999999753 78
Q ss_pred cEEEEEc--Cccccc-cchhhHhhhhhhhcCCCCccc
Q 018083 287 PVVVVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 287 tvIiiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~ 320 (361)
|||++|| ..+..+ ||+++ +|++|++++.|+++.
T Consensus 203 tii~~tH~~~~~~~~~~d~i~-~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 203 SIILITHYQRLLDYIKPDYVH-VMQNGKIIKTGDAEL 238 (252)
T ss_pred EEEEEecCHHHHHhhhCCEEE-EEeCCEEEEecChhh
Confidence 9999999 455555 89996 599999999998863
No 261
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.98 E-value=5.7e-34 Score=259.72 Aligned_cols=177 Identities=20% Similarity=0.174 Sum_probs=138.5
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeE
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 167 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 167 (361)
++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~----- 64 (206)
T TIGR03608 1 LKNISKKFGDK---II---LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPP----- 64 (206)
T ss_pred CcceEEEECCE---EE---EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccc-----
Confidence 57999999753 45 666999999999999999999999999999999999 999999999987530
Q ss_pred eeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 168 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 168 ~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
+.. .......+..+++++|++.+++. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 65 ---~~~---~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----------- 126 (206)
T TIGR03608 65 ---LNS---KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNL----------- 126 (206)
T ss_pred ---cch---hhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchh-----------
Confidence 000 00011234568889999888875 8999998754311 1223344567888999999976
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Ccccccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~a 300 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++|| .....+|
T Consensus 127 ------~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 127 ------KLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred ------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 45888999999999999999999 999999752 789999999 3345689
Q ss_pred chhh
Q 018083 301 DRAR 304 (361)
Q Consensus 301 Dri~ 304 (361)
|+++
T Consensus 201 d~i~ 204 (206)
T TIGR03608 201 DRVI 204 (206)
T ss_pred CEEE
Confidence 9984
No 262
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=7.8e-34 Score=261.73 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=143.2
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~--- 69 (221)
T cd03244 2 DIEFKNVSLRYRPNL-PPV---LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDIS--- 69 (221)
T ss_pred cEEEEEEEEecCCCC-ccc---ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhH---
Confidence 378999999997532 145 666999999999999999999999999999999999 99999999997764
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+.....+..++|++|++.+++.++.+|+.+... ...+++.++++.+++.+.+.+-..
T Consensus 70 ------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~l~~-- 127 (221)
T cd03244 70 ------------KIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--------YSDEELWQALERVGLKEFVESLPG-- 127 (221)
T ss_pred ------------hCCHHHHhhhEEEECCCCccccchHHHHhCcCCC--------CCHHHHHHHHHHhCcHHHHHhccc--
Confidence 1122233556888999988777789999864211 112345555666666542100000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~ 298 (361)
.-...+++.+.+||+||+||++||||| |||+++||. +.|||++|| +++.
T Consensus 128 ----~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~- 202 (221)
T cd03244 128 ----GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII- 202 (221)
T ss_pred ----ccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-
Confidence 000012468889999999999999999 999999753 789999999 4454
Q ss_pred ccchhhHhhhhhhhcCCCC
Q 018083 299 LTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~ 317 (361)
.||+++ +|++|++++.|+
T Consensus 203 ~~d~i~-~l~~g~~~~~~~ 220 (221)
T cd03244 203 DSDRIL-VLDKGRVVEFDS 220 (221)
T ss_pred hCCEEE-EEECCeEEecCC
Confidence 599996 599999988765
No 263
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=2.2e-34 Score=267.79 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=140.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc----ccceeeecccccCcceEeEeeeecCCCcceeeee
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 182 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p----~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d 182 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|+++|+++.. . ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~~~~---------------~--~~ 59 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRPLLP---------------L--SI 59 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEechh---------------h--hh
Confidence 556999999999999999999999999999999999 8 89999999987641 1 11
Q ss_pred cCCCCcccccchH-HH-HH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccC
Q 018083 183 TRSLSDDASDNIN-MI-KL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 259 (361)
Q Consensus 183 ~r~~i~~v~q~~~-l~-~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~ 259 (361)
.+..+++++|++. .+ +. ++.+|+.+...... ......++++.++++.+++.+. ..++++.+.
T Consensus 60 ~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~--------------~~~~~~~~~ 124 (230)
T TIGR02770 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG-KLSKQARALILEALEAVGLPDP--------------EEVLKKYPF 124 (230)
T ss_pred hhheeEEEecCchhhcCcccCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCch--------------HHHHhCChh
Confidence 1235677888864 22 22 56666654332111 1123345668889999999730 004588899
Q ss_pred Cchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhh
Q 018083 260 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
+||||||||++||||| ||||++||. ++|||++|| +++..+||+++ +|++|+
T Consensus 125 ~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~-~l~~G~ 203 (230)
T TIGR02770 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA-VMDDGR 203 (230)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEECCE
Confidence 9999999999999999 999999642 689999999 56778999996 599999
Q ss_pred hcCCCCccccccCCC
Q 018083 312 LLGIPPAKQIFDIPE 326 (361)
Q Consensus 312 iv~~g~~~~i~~~~~ 326 (361)
++..|++++++..+.
T Consensus 204 i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 204 IVERGTVKEIFYNPK 218 (230)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999988877654
No 264
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=5.1e-34 Score=253.97 Aligned_cols=212 Identities=15% Similarity=0.140 Sum_probs=170.0
Q ss_pred ccccccccceeeecCc------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 83 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++++++||++.|... ....|++. |||++++|+++||||.||||||||.|+|+|+.+ |++|+|.+|
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~---vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n 73 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKP---VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILIN 73 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccc---eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEEC
Confidence 5689999999987532 22567666 999999999999999999999999999999999 999999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeec-CCCCcccccchHH--HHH-HHHhccccceeEEecCCChhhhhhhcccccccC
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINM--IKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l--~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
|+.+. +.-+.. ...+.++||+++- .|. .|..-+..++......+.....+++.+-|+++|
T Consensus 74 ~~~L~----------------~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VG 137 (267)
T COG4167 74 DHPLH----------------FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVG 137 (267)
T ss_pred Ccccc----------------ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhc
Confidence 98875 111222 2356778888753 233 443333444444455666778889999999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
+-++. ++-+|+.||-|||||||+|||| ||...+||- |.
T Consensus 138 L~Pdh----------------an~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi 201 (267)
T COG4167 138 LLPDH----------------ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI 201 (267)
T ss_pred cCccc----------------cccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc
Confidence 98753 5889999999999999999998 777777542 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+.|+|+. ..+..++|.|+ ||++|++++.|.+.++|..|.++-++.++.
T Consensus 202 SyiYV~QhlG~iKHi~D~vi-VM~EG~vvE~G~t~~v~a~P~~~~TkRlie 251 (267)
T COG4167 202 SYIYVTQHIGMIKHISDQVL-VMHEGEVVERGSTADVLASPLHELTKRLIE 251 (267)
T ss_pred eEEEEechhhHhhhhcccEE-EEecCceeecCChhhhhcCCccHHHHHHHH
Confidence 9999997 68889999995 699999999999999999999877665543
No 265
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-34 Score=293.18 Aligned_cols=200 Identities=11% Similarity=0.118 Sum_probs=153.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeecccccC
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~ 161 (361)
.++|+++|+++.|+.+...++ |+++||+|++|++++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR---VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKPVK 328 (506)
T ss_pred CceEEEecCcccccccccccc---ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEECC
Confidence 357999999999952111246 566999999999999999999999999999999997 6 8999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhccccceeE-Eec---CCChhhhhhhcccccccCC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELV-IRR---SDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~-~~~---~~~~~~~~~v~~~l~~~gl 233 (361)
.. . .....+..++|++|++. +++. ++.+|+.++... ... .+....++++.++++.+++
T Consensus 329 ~~-------------~-~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 329 IR-------------N-PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CC-------------C-HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 10 0 00112345788899863 4444 888998875321 101 1223344668889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 288 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tv 288 (361)
.+. .+++++.+||||||||++||||| ||||++||. |+||
T Consensus 395 ~~~----------------~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 395 KTA----------------SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred cCC----------------CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEE
Confidence 631 24889999999999999999999 999999763 8999
Q ss_pred EEEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 289 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 289 IiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
|++|| +.+..+|||++ +|++|+++..++++++
T Consensus 459 i~~sHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSELPEVLGLSDRVL-VMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCCHHHHHHhCCEEE-EEECCEEEEEeccccC
Confidence 99999 56789999996 5999999988876544
No 266
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=3.9e-34 Score=295.59 Aligned_cols=208 Identities=14% Similarity=0.165 Sum_probs=153.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccccC-c
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGD-G 162 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~-~ 162 (361)
|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.... .
T Consensus 1 l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDGK---EV---LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECCe---Ee---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 5789999999652 45 66699999999999999999999999999999996 7 89999999742110 0
Q ss_pred ceEeEeeeec------CCC-----cce------eeeecCCCCcccccc-hHHHHH-HHHhccccceeEEecCCChhhhhh
Q 018083 163 TYFLQEYTIP------RGS-----NSF------SLYDTRSLSDDASDN-INMIKL-WIMEGVRHGELVIRRSDSSSLRNR 223 (361)
Q Consensus 163 ~~~~~~~~i~------~~~-----~~~------~~~d~r~~i~~v~q~-~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~ 223 (361)
++..|..... ... ... .....+..+++++|+ ..+++. ++.+|+.++.... ..+..+.+++
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~ 148 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGR 148 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CCCHHHHHHH
Confidence 1111100000 000 000 011234567889997 456554 8889998764321 1223445567
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------- 284 (361)
+.++++.+++.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 149 ~~~~l~~~gl~~-----------------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 211 (520)
T TIGR03269 149 AVDLIEMVQLSH-----------------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL 211 (520)
T ss_pred HHHHHHHcCChh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH
Confidence 888999999976 45889999999999999999999 999999753
Q ss_pred -------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 -------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 -------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|+|||+||| +.+..+||+++ +|++|+++..|++++++.
T Consensus 212 ~~l~~~~g~tviivtHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 212 EEAVKASGISMVLTSHWPEVIEDLSDKAI-WLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHHhcCcEEEEEeCCHHHHHHhcCEEE-EEeCCEEeeecCHHHHHH
Confidence 789999999 56678999996 599999998888877654
No 267
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=5.9e-34 Score=294.26 Aligned_cols=209 Identities=12% Similarity=0.177 Sum_probs=154.6
Q ss_pred ccccccccceeeecC--cceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec-ccc
Q 018083 83 GSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSV 159 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~--~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~-G~~ 159 (361)
.++|+++|++++|++ ....++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++ |.+
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g~~ 348 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKA---VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVGDE 348 (520)
T ss_pred CceEEEeccEEEeccCCCCCceE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecCCc
Confidence 458999999999953 111245 666999999999999999999999999999999999 999999996 643
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
... .. . .. .......+..++|++|++.+++. ++.+|+.++... ..+....++++.++++.+++.+..
T Consensus 349 ~~~--~~-~--~~----~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~- 416 (520)
T TIGR03269 349 WVD--MT-K--PG----PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEK- 416 (520)
T ss_pred ccc--cc-c--cc----hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCCcc-
Confidence 210 00 0 00 00001123457889998777665 888998764321 112223445677889999996410
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
...++++++.+||||||||++||||| ||||++||. |.|||+||
T Consensus 417 -----------~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 485 (520)
T TIGR03269 417 -----------AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVS 485 (520)
T ss_pred -----------chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 00035889999999999999999999 999999653 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+|||++ +|++|+++..|++++++.
T Consensus 486 Hd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 486 HDMDFVLDVCDRAA-LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCHHHHHHhCCEEE-EEECCEEEEECCHHHHHh
Confidence 9 56778999996 599999999888776643
No 268
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-33 Score=291.77 Aligned_cols=191 Identities=12% Similarity=0.103 Sum_probs=149.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|+ .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 263 ~~~l~~~~l~~~~~-----~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 263 ETVFEVRNVTSRDR-----KK---VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISP 329 (510)
T ss_pred CcEEEEeCccccCC-----Cc---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECCC
Confidence 34799999999763 24 666999999999999999999999999999999999 999999999977641
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch---HHHHH-HHHhccccceeEE----e---c-CCChhhhhhhcccccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI---NMIKL-WIMEGVRHGELVI----R---R-SDSSSLRNRMRCKAHK 230 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~---~l~~~-ti~~ni~~~~~~~----~---~-~~~~~~~~~v~~~l~~ 230 (361)
. ......+..++|++|++ .+++. ++.+|+.++.... . . ......++++.++++.
T Consensus 330 ~--------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 395 (510)
T PRK09700 330 R--------------SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQREL 395 (510)
T ss_pred C--------------CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHh
Confidence 0 00112234678899973 45555 8889988754210 0 0 0122233567788999
Q ss_pred cCCC-cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 231 IGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 231 ~gl~-~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
+++. + .+++++.+||||||||++||||| ||||++||.
T Consensus 396 ~~l~~~-----------------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 458 (510)
T PRK09700 396 LALKCH-----------------SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458 (510)
T ss_pred cCCCCC-----------------CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC
Confidence 9996 5 34899999999999999999999 999999763
Q ss_pred CccEEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 285 DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 285 g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
|.|||++|| +.+..+|||++ +|++|+++..++.
T Consensus 459 g~tvi~vsHd~~~~~~~~d~i~-~l~~G~i~~~~~~ 493 (510)
T PRK09700 459 GKVILMVSSELPEIITVCDRIA-VFCEGRLTQILTN 493 (510)
T ss_pred CCEEEEEcCCHHHHHhhCCEEE-EEECCEEEEEecC
Confidence 889999999 46789999996 5999999876655
No 269
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=1.4e-33 Score=261.44 Aligned_cols=191 Identities=14% Similarity=0.141 Sum_probs=146.8
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+.++|++++|++.+ ..++ |+++||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~--~~~G~i~~~g~~~~-- 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI---LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG--TTSGQILFNGQPRK-- 75 (226)
T ss_pred cceeecceeeeecCcccccc---ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCC--CCceEEEECCEECC--
Confidence 467999999997542 2356 555999999999999999999999999999999986221 58999999997653
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcc-cccccCCCcceeE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRC-KAHKIGCEPSVIR 239 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~-~l~~~gl~~~~~~ 239 (361)
. ...+..+++++|++.+++. ++.+|+.++...... .........+.+ +++.+++.+
T Consensus 76 -------------~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (226)
T cd03234 76 -------------P---DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR---- 135 (226)
T ss_pred -------------h---HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh----
Confidence 0 1234567888998887776 899999875331110 111112223444 788888876
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 294 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~ 294 (361)
+.++.+.+|||||+||++||||| |||+++||. +.|+|++||+
T Consensus 136 -------------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 136 -------------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred -------------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 44788999999999999999999 999999753 7899999993
Q ss_pred ---ccccccchhhHhhhhhhhcCCC
Q 018083 295 ---DLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 295 ---~~~~~aDri~vvl~~G~iv~~g 316 (361)
++..+||+++ +|++|++++.|
T Consensus 203 ~~~~~~~~~d~i~-~l~~G~i~~~g 226 (226)
T cd03234 203 PRSDLFRLFDRIL-LLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHhCCEEE-EEeCCEEEecC
Confidence 5789999996 59999998764
No 270
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=7.5e-34 Score=268.64 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=147.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..+.|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 16 ~~~~i~~~~l~~~~~~~~-~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~ 86 (257)
T cd03288 16 LGGEIKIHDLCVRYENNL-KPV---LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDIS 86 (257)
T ss_pred CCceEEEEEEEEEeCCCC-Ccc---eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhh
Confidence 345799999999997532 135 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.......+..++|++|++.+++.++.+|+..... . ..+.+..+++.+++...+...+
T Consensus 87 ---------------~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~----~----~~~~~~~~l~~~~l~~~~~~~~ 143 (257)
T cd03288 87 ---------------KLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK----C----TDDRLWEALEIAQLKNMVKSLP 143 (257)
T ss_pred ---------------hCCHHHHhhhEEEECCCCcccccHHHHhcCcCCC----C----CHHHHHHHHHHhCcHHHHhhcc
Confidence 1122234556788999988877788888763211 0 1112222333333322100000
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
..+ + ..++..+.+||+||+||++||||| ||||++||. +.|||++|| ..
T Consensus 144 ~~l----~--~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 217 (257)
T cd03288 144 GGL----D--AVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVST 217 (257)
T ss_pred ccc----C--cEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHH
Confidence 000 0 023567789999999999999999 999999753 799999999 34
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+. .|||++ +|++|++++.|+++++...
T Consensus 218 ~~-~~dri~-~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 218 IL-DADLVL-VLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HH-hCCEEE-EEECCEEEEeCCHHHHHhc
Confidence 44 499996 5999999999998877654
No 271
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.5e-34 Score=250.56 Aligned_cols=183 Identities=10% Similarity=0.078 Sum_probs=155.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++++.+.-++. ++ |+++||++.+||+++|+||||||||||+|+++.|.. |++|.+++.|+++.
T Consensus 3 lle~kq~~y~a~~a---~i---l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs--- 68 (223)
T COG4619 3 LLELKQVGYLAGDA---KI---LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVS--- 68 (223)
T ss_pred chHHHHHHhhcCCC---ee---ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCcccc---
Confidence 46777776555443 45 666999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+.+...|..++|+.|.+.+|+.+|.+|+.|+...+. +...+..+..+++++++.+.+
T Consensus 69 ------------~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~---rr~dr~aa~~llar~~l~~~~------- 126 (223)
T COG4619 69 ------------TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRN---RRPDRAAALDLLARFALPDSI------- 126 (223)
T ss_pred ------------ccChHHHHHHHHHHHcCccccccchhhccccchHHhc---cCCChHHHHHHHHHcCCchhh-------
Confidence 4566677888999999999999999999999987543 233566777889999998754
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~ 296 (361)
+++...+||||++||++|+|.| ||||++||+ ...+++||| +.+
T Consensus 127 ---------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa 197 (223)
T COG4619 127 ---------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA 197 (223)
T ss_pred ---------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH
Confidence 6899999999999999999998 999999864 789999999 567
Q ss_pred ccccchhhHhhhhhhhc
Q 018083 297 LSLTDRARIRTYLGELL 313 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv 313 (361)
.+.+|+++ .+..|++=
T Consensus 198 ~rha~k~i-tl~~G~~~ 213 (223)
T COG4619 198 IRHADKVI-TLQPGHAG 213 (223)
T ss_pred hhhhheEE-EeccCccc
Confidence 89999994 67777663
No 272
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=9.8e-34 Score=264.66 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=129.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.. .....+..
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~----------------~~~~~~~~ 95 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWK----------------RRKKFLRR 95 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc----------------cchhhccc
Confidence 566999999999999999999999999999999999 999999999976430 00112334
Q ss_pred Ccccc-cchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 187 SDDAS-DNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 187 i~~v~-q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
++|++ |...+++. ++.+|+.+..... ........+++.++++.+++.+ .+++++.+||||
T Consensus 96 i~~~~~~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LS~G 157 (236)
T cd03267 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLDLEE-----------------LLDTPVRQLSLG 157 (236)
T ss_pred EEEEcCCccccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHH
Confidence 56665 44444433 6777776533211 1222334556777888899976 358889999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g 316 (361)
||||++||||| ||||++||. +.|||++|| .++..+||+++ +|++|++++.|
T Consensus 158 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~-~l~~G~i~~~g 236 (236)
T cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL-VIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE-EEeCCEEEecC
Confidence 99999999999 999999752 689999999 45678999996 59999987654
No 273
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=9.6e-34 Score=322.41 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=166.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++||+++|++... ++ |+|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.+||.++.
T Consensus 1216 g~I~f~nVs~~Y~~~~~-~v---L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~-- 1283 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGR-AV---LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWN-- 1283 (1490)
T ss_pred CeEEEEEEEEEeCCCCc-ce---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcc--
Confidence 36999999999975432 46 666999999999999999999999999999999986 4799999999987
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+.+.+.|+.+++|+|++.+|+.||++|+... .....+++.++++.+++.+.+...++.
T Consensus 1284 -------------~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--------~~~tdeei~~aL~~~~L~~~i~~lp~G 1342 (1490)
T TIGR01271 1284 -------------SVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--------EQWSDEEIWKVAEEVGLKSVIEQFPDK 1342 (1490)
T ss_pred -------------cCCHHHHHhceEEEeCCCccCccCHHHHhCcc--------cCCCHHHHHHHHHHCCCHHHHHhCccc
Confidence 56677889999999999999999999999631 123456788889999987755444455
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Ccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 298 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~ 298 (361)
+.+.|++ ....||||||||++||||| ||||+++|. ++|||+||| -....
T Consensus 1343 Ldt~v~e------~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1343 LDFVLVD------GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL 1416 (1490)
T ss_pred ccccccc------CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 5554443 3447999999999999998 999999763 899999999 44556
Q ss_pred ccchhhHhhhhhhhcCCCCcccccc
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
.||||+ +|++|+|++.|+|++++.
T Consensus 1417 ~~DrIl-vL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1417 ECQQFL-VIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred hCCEEE-EEECCEEEEeCCHHHHHc
Confidence 699995 699999999999999985
No 274
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=3.3e-33 Score=263.92 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=138.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~---~v---l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~---- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQR---RV---LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL---- 67 (251)
T ss_pred cEEEEeceEEEECCc---eE---EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc----
Confidence 479999999999753 35 666999999999999999999999999999999999 999999987621
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHH---HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK---LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~---~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.++|++|++.+++ .++.+++.+.. ....+++.++++.+++.+
T Consensus 68 ----------------------~i~~v~q~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~l~~~gl~~----- 112 (251)
T PRK09544 68 ----------------------RIGYVPQKLYLDTTLPLTVNRFLRLRP--------GTKKEDILPALKRVQAGH----- 112 (251)
T ss_pred ----------------------CEEEeccccccccccChhHHHHHhccc--------cccHHHHHHHHHHcCChH-----
Confidence 1334444433222 13444443210 112345677889999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 113 ------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 113 ------------LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred ------------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45889999999999999999999 999999652 789999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+++..+||+++ +|+ ++++..|++++++..+
T Consensus 181 ~~~i~~~~d~i~-~l~-~~i~~~g~~~~~~~~~ 211 (251)
T PRK09544 181 LHLVMAKTDEVL-CLN-HHICCSGTPEVVSLHP 211 (251)
T ss_pred HHHHHHhCCEEE-EEC-CceEeeCCHHHHhCCH
Confidence 56778999996 486 4799999988876543
No 275
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-33 Score=247.35 Aligned_cols=219 Identities=17% Similarity=0.143 Sum_probs=164.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|++++.++++.|++. .. .++|||++.|||.++|+|+||||||||++||++-+. |++|+|.|.-.+-.
T Consensus 3 ~~PLL~V~~lsk~Yg~~---~g---c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~ 71 (258)
T COG4107 3 DKPLLSVSGLSKLYGPG---KG---CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQ 71 (258)
T ss_pred CCcceeehhhhhhhCCC---cC---ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCC
Confidence 35789999999999875 34 566999999999999999999999999999999999 99999998764422
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH---HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~---ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
. ..-+.+.. .-.-.-.|.-.++|.|||.--.. +...||..-+...+...-..+++.+.++|+.+.++...
T Consensus 72 ~---~dl~~msE---aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~R- 144 (258)
T COG4107 72 P---RDLYTMSE---AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDR- 144 (258)
T ss_pred c---hhHhhhch---HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCccc-
Confidence 0 00000000 00001124456888888863222 44445543332221111245677888899999998643
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
.+..|.++|||||||+.|||.| ||||.+|+- +.+++++|
T Consensus 145 ---------------iDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVT 209 (258)
T COG4107 145 ---------------IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209 (258)
T ss_pred ---------------ccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEe
Confidence 4889999999999999999998 999999752 88999999
Q ss_pred cC--ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 293 HG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 293 H~--~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
|+ .+.-++||.+ +|++|++++.|-++++++.|.++|+.-++
T Consensus 210 HDl~VarLla~rlm-vmk~g~vve~GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 210 HDLAVARLLADRLM-VMKQGQVVESGLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred chhHHHHHhhhcce-eecCCCEeccccccccccCCCCchHHHHH
Confidence 94 4557799996 69999999999999999999999976444
No 276
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=4.2e-33 Score=254.82 Aligned_cols=177 Identities=14% Similarity=0.148 Sum_probs=137.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+.|+++|++++|+... ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~-- 73 (207)
T cd03369 5 GEIEVENLSVRYAPDL-PPV---LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDIS-- 73 (207)
T ss_pred CeEEEEEEEEEeCCCC-ccc---ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhH--
Confidence 4689999999997532 145 666999999999999999999999999999999999 99999999998763
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++.++.+|+.+... ...+++.++++ +
T Consensus 74 -------------~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~--------~~~~~~~~~l~-------~------ 119 (207)
T cd03369 74 -------------TIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE--------YSDEEIYGALR-------V------ 119 (207)
T ss_pred -------------HCCHHHHHhhEEEEecCCcccCccHHHHhcccCC--------CCHHHHHHHhh-------c------
Confidence 1112223456888999988777789999864211 11122333332 1
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~ 297 (361)
++.+.+|||||+||++||||| |||+++||. +.|+|++|| +.+.
T Consensus 120 -----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 120 -----------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred -----------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 456889999999999999999 999999753 789999999 3444
Q ss_pred cccchhhHhhhhhhhcCCCCc
Q 018083 298 SLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~ 318 (361)
. ||+++ +|++|+++..|++
T Consensus 189 ~-~d~v~-~l~~g~i~~~g~~ 207 (207)
T cd03369 189 D-YDKIL-VMDAGEVKEYDHP 207 (207)
T ss_pred h-CCEEE-EEECCEEEecCCC
Confidence 4 99996 5999999887753
No 277
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.9e-33 Score=256.84 Aligned_cols=176 Identities=14% Similarity=0.119 Sum_probs=139.8
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+++|++++|++. ++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~~l~~~~l~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i~ 76 (214)
T PRK13543 8 APPLLAAHALAFSRNEE---PV---FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTAT 76 (214)
T ss_pred CcceEEEeeEEEecCCc---ee---eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEcc
Confidence 45689999999999753 45 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. . ..+..+++++|++.+++. ++.+|+.+..... .....+.+.++++.+++.+
T Consensus 77 ~---------------~---~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~----~~~~~~~~~~~l~~~~l~~----- 129 (214)
T PRK13543 77 R---------------G---DRSRFMAYLGHLPGLKADLSTLENLHFLCGLH----GRRAKQMPGSALAIVGLAG----- 129 (214)
T ss_pred c---------------h---hhhhceEEeecCcccccCCcHHHHHHHHHHhc----CCcHHHHHHHHHHHcCChh-----
Confidence 1 0 122346677887766665 7888876543211 1122345667888889876
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||+ |||+++||. +.|||++||
T Consensus 130 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (214)
T PRK13543 130 ------------YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA 197 (214)
T ss_pred ------------hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 34888999999999999999999 999999753 789999999
Q ss_pred CccccccchhhHhhh
Q 018083 294 GDLLSLTDRARIRTY 308 (361)
Q Consensus 294 ~~~~~~aDri~vvl~ 308 (361)
+++..+||++++ +.
T Consensus 198 ~~~~~~~~~i~~-l~ 211 (214)
T PRK13543 198 YAAPPVRTRMLT-LE 211 (214)
T ss_pred hhhhhhcceEEE-Ee
Confidence 578899999953 54
No 278
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=2e-33 Score=264.53 Aligned_cols=187 Identities=16% Similarity=0.182 Sum_probs=145.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++||++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|+++.
T Consensus 1 ~~~~~l~~~-------~~---l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~i~---- 60 (248)
T PRK03695 1 MQLNDVAVS-------TR---LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQPLE---- 60 (248)
T ss_pred Ccccccchh-------ce---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEecC----
Confidence 357888875 13 667999999999999999999999999999999986 5 899999998764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.++.. ++.+|+.+.... ........+++.++++.+++.+
T Consensus 61 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~--------- 118 (248)
T PRK03695 61 -----------AWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDD--------- 118 (248)
T ss_pred -----------cCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHh---------
Confidence 11111223446788888654433 788888765321 1122334567788899999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc----------------CCCceeecC----------------CccEEEEE
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPt~~L~~----------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| |||+++||. +.|||++|
T Consensus 119 --------~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~s 190 (248)
T PRK03695 119 --------KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSS 190 (248)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45889999999999999998875 899998652 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+||+++ +|++|++++.|++++++.
T Consensus 191 H~~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 191 HDLNHTLRHADRVW-LLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCHHHHHHhCCEEE-EEECCEEEEECCHHHHhC
Confidence 9 46789999996 599999999998877654
No 279
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=5.8e-33 Score=260.19 Aligned_cols=193 Identities=16% Similarity=0.070 Sum_probs=137.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++|+++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 1 MLSIKDLHVSVEDK---AI---LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDLLE 69 (248)
T ss_pred CeEEEEEEEEeCCe---ee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCcccc
Confidence 47899999999753 45 66699999999999999999999999999999994 6 899999999987641
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-H-------HHhccccceeEEecCCChhhhhhhcccccccCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-W-------IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-t-------i~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl 233 (361)
...... +..+++++|++.+++. + +.+++..... ..........+.+.++++.+++
T Consensus 70 ---------------~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l 133 (248)
T PRK09580 70 ---------------LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG-QEPLDRFDFQDLMEEKIALLKM 133 (248)
T ss_pred ---------------CCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccc-cccchHHHHHHHHHHHHHHcCC
Confidence 111111 2345666676544332 1 1222211000 0001112234556677888888
Q ss_pred CcceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
.+. +.++.+. +||||||||++||||| ||||++||. ++|
T Consensus 134 ~~~----------------~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~t 197 (248)
T PRK09580 134 PED----------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRS 197 (248)
T ss_pred Chh----------------hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 532 2355664 7999999999999999 999999753 789
Q ss_pred EEEEEc--Cccccc-cchhhHhhhhhhhcCCCCcccc
Q 018083 288 VVVVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 288 vIiiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~i 321 (361)
||++|| ..+..+ ||+++ +|++|+++..|+++.+
T Consensus 198 iii~sH~~~~~~~~~~d~i~-~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 198 FIIVTHYQRILDYIKPDYVH-VLYQGRIVKSGDFTLV 233 (248)
T ss_pred EEEEeCCHHHHHhhhCCEEE-EEECCeEEEeCCHHHH
Confidence 999999 455555 89995 5999999998887633
No 280
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=9.6e-33 Score=251.89 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=135.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~---~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (201)
T cd03231 1 LEADELTCERDGR---AL---FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDF--- 66 (201)
T ss_pred CEEEEEEEEeCCc---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999977531
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
. ....+..+++++|++.+++. ++.+|+.+... ....+++.++++.+++.+
T Consensus 67 ------------~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~--------- 117 (201)
T cd03231 67 ------------Q-RDSIARGLLYLGHAPGIKTTLSVLENLRFWHA-------DHSDEQVEEALARVGLNG--------- 117 (201)
T ss_pred ------------c-cHHhhhheEEeccccccCCCcCHHHHHHhhcc-------cccHHHHHHHHHHcCChh---------
Confidence 0 01234457788888766554 88898876422 112456778889999976
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
..++++.+||||||||++||||| ||||++||. +.|+|++|| ....
T Consensus 118 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 118 --------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189 (201)
T ss_pred --------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhh
Confidence 34788999999999999999999 999999753 789999999 4566
Q ss_pred cccchhh
Q 018083 298 SLTDRAR 304 (361)
Q Consensus 298 ~~aDri~ 304 (361)
.+|++++
T Consensus 190 ~~~~~~~ 196 (201)
T cd03231 190 EAGAREL 196 (201)
T ss_pred hccceeE
Confidence 8899984
No 281
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=6.6e-33 Score=248.78 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=121.1
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++|++++|+.. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 ~~~~l~~~~~~~---~~---l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~----- 64 (180)
T cd03214 1 EVENLSVGYGGR---TV---LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLA----- 64 (180)
T ss_pred CeeEEEEEECCe---ee---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECC-----
Confidence 578999999752 45 666999999999999999999999999999999999 99999999997764
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
.+.....+..++|++| +++.+++.+
T Consensus 65 ----------~~~~~~~~~~i~~~~q----------------------------------~l~~~gl~~----------- 89 (180)
T cd03214 65 ----------SLSPKELARKIAYVPQ----------------------------------ALELLGLAH----------- 89 (180)
T ss_pred ----------cCCHHHHHHHHhHHHH----------------------------------HHHHcCCHh-----------
Confidence 1111112223344444 466677765
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Ccccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~ 298 (361)
.+++.+.+|||||+||++||||| ||||++||. +.|+|++|| +++..
T Consensus 90 ------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 90 ------LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34778899999999999999999 999999652 679999999 56668
Q ss_pred ccchhhHhhhhhhhcCC
Q 018083 299 LTDRARIRTYLGELLGI 315 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~ 315 (361)
+||+++ +|++|+++..
T Consensus 164 ~~d~~~-~l~~g~i~~~ 179 (180)
T cd03214 164 YADRVI-LLKDGRIVAQ 179 (180)
T ss_pred hCCEEE-EEECCEEEec
Confidence 999996 5999998754
No 282
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=8.8e-33 Score=255.43 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=136.5
Q ss_pred ccccccceeeecC----cceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc--c
Q 018083 85 LTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS--S 158 (361)
Q Consensus 85 ~lei~nl~~~Y~~----~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G--~ 158 (361)
+|+++|++++|+. +....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE---EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecCCC
Confidence 4789999999963 111245 566999999999999999999999999999999999 9999999984 2
Q ss_pred --ccCcceEeEeeeecCCCcceeee---ec-CCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 159 --VGDGTYFLQEYTIPRGSNSFSLY---DT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 159 --~i~~~~~~~~~~i~~~~~~~~~~---d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
++. .+... +. +..++|++|++.+++. ++.+|+.++.... ........+++.++++.+
T Consensus 73 ~~~~~---------------~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~ 136 (224)
T TIGR02324 73 WVDLA---------------QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARL 136 (224)
T ss_pred ccchh---------------hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHc
Confidence 221 01111 11 2357888998877665 7888887643211 122234456778889999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
++.+. +.++++.+||||||||++||||| ||||++||. |+
T Consensus 137 ~l~~~----------------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 200 (224)
T TIGR02324 137 NIPER----------------LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGA 200 (224)
T ss_pred CCchh----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 99752 23678999999999999999999 999999753 78
Q ss_pred cEEEEEc--Cccccccchhh
Q 018083 287 PVVVVTH--GDLLSLTDRAR 304 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~ 304 (361)
|||++|| ..+..+|||++
T Consensus 201 tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 201 ALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred EEEEEeCCHHHHHHhcceeE
Confidence 9999999 35567899984
No 283
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=5.7e-33 Score=285.54 Aligned_cols=196 Identities=14% Similarity=0.129 Sum_probs=150.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i~~ 162 (361)
.+|+++|+++.|+.+....+ |+++||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~~~~ 327 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKR---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKPVDI 327 (500)
T ss_pred ceEEEeCCcccccccccccc---cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEECCC
Confidence 47999999999942111245 566999999999999999999999999999999998 7 79999999987631
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhccccceeE-Ee---cCCChhhhhhhcccccccCCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELV-IR---RSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~-~~---~~~~~~~~~~v~~~l~~~gl~ 234 (361)
. ......+..+++++|++. +++. ++.+|+.++... .. .......++++.++++.+++.
T Consensus 328 ~--------------~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 328 R--------------NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred C--------------CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 0 001123456889999863 5554 888888875321 10 111223345678899999996
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
.. ..++++.+||||||||++||||| ||||++||. |.|||
T Consensus 394 ~~----------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 457 (500)
T TIGR02633 394 TA----------------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457 (500)
T ss_pred CC----------------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEE
Confidence 42 23889999999999999999999 999999763 88999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
++|| +++..+|||++ +|++|+++...+.
T Consensus 458 ivsHd~~~~~~~~d~v~-~l~~G~i~~~~~~ 487 (500)
T TIGR02633 458 VVSSELAEVLGLSDRVL-VIGEGKLKGDFVN 487 (500)
T ss_pred EECCCHHHHHHhCCEEE-EEECCEEEEEEcc
Confidence 9999 57789999996 5999999875543
No 284
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=8.2e-33 Score=284.64 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=148.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++++|+++ .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~--------~~---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~- 318 (501)
T PRK10762 256 VRLKVDNLSG--------PG---VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT- 318 (501)
T ss_pred cEEEEeCccc--------CC---cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC-
Confidence 4688888874 13 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCcceee-eecCCCCcccccch---HHHHH-HHHhccccceeEE-e----cCCChhhhhhhcccccccCC
Q 018083 164 YFLQEYTIPRGSNSFSL-YDTRSLSDDASDNI---NMIKL-WIMEGVRHGELVI-R----RSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~-~d~r~~i~~v~q~~---~l~~~-ti~~ni~~~~~~~-~----~~~~~~~~~~v~~~l~~~gl 233 (361)
... ...+..++|++|++ .+++. ++.+|+.++.... . .......++++.++++.+++
T Consensus 319 --------------~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 384 (501)
T PRK10762 319 --------------RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI 384 (501)
T ss_pred --------------CCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCC
Confidence 110 11234588999986 34444 8889887653210 0 01222345668889999999
Q ss_pred C-cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 234 E-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 234 ~-~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
. + .+++++.+||||||||++||||| ||||++||. |.|
T Consensus 385 ~~~-----------------~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 447 (501)
T PRK10762 385 KTP-----------------SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS 447 (501)
T ss_pred CCC-----------------CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCE
Confidence 5 4 24889999999999999999999 999999763 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
||++|| +.+..+||+++ +|++|+++..++++++
T Consensus 448 viivtHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 448 IILVSSEMPEVLGMSDRIL-VMHEGRISGEFTREQA 482 (501)
T ss_pred EEEEcCCHHHHHhhCCEEE-EEECCEEEEEeccccC
Confidence 999999 57789999996 5999999988877544
No 285
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=2.1e-32 Score=248.75 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=133.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (198)
T TIGR01189 1 LAARNLACSRGER---ML---FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAE--- 66 (198)
T ss_pred CEEEEEEEEECCE---EE---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. ...+..++|++|+..+++. ++.+|+.+..... . .. ++++.++++.+++.+
T Consensus 67 ------------~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~-~~-~~~~~~~l~~~~l~~--------- 119 (198)
T TIGR01189 67 ------------QR-DEPHRNILYLGHLPGLKPELSALENLHFWAAIH---G-GA-QRTIEDALAAVGLTG--------- 119 (198)
T ss_pred ------------ch-HHhhhheEEeccCcccccCCcHHHHHHHHHHHc---C-Cc-HHHHHHHHHHcCCHH---------
Confidence 00 1123456778887766654 8888887643211 1 11 345677889999987
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcCccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~~~~~~ 299 (361)
.+++++.+||||||||++||||| ||||++||. +.|||++||+.....
T Consensus 120 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 120 --------FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred --------HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 45889999999999999999999 999999753 789999999655555
Q ss_pred cchh
Q 018083 300 TDRA 303 (361)
Q Consensus 300 aDri 303 (361)
|+++
T Consensus 192 ~~~~ 195 (198)
T TIGR01189 192 EARE 195 (198)
T ss_pred ceEE
Confidence 6776
No 286
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.6e-32 Score=250.83 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=134.9
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+.. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~---~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~-- 67 (204)
T PRK13538 1 MLEARNLACERDER---IL---FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRR-- 67 (204)
T ss_pred CeEEEEEEEEECCE---EE---EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEccc--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.. ...+..+++++|++.+++. ++.+|+.+...... ....+++.++++.+++.+
T Consensus 68 -------------~~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~l~~~gl~~-------- 121 (204)
T PRK13538 68 -------------QR-DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG----PGDDEALWEALAQVGLAG-------- 121 (204)
T ss_pred -------------ch-HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC----ccHHHHHHHHHHHcCCHH--------
Confidence 00 0123346677777666654 88888876543111 123456778899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
..++++.+||||||||++||||| ||||++||. +.|||++|| .++
T Consensus 122 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 122 ---------FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred ---------HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 45889999999999999999999 999999753 789999999 466
Q ss_pred ccccchh
Q 018083 297 LSLTDRA 303 (361)
Q Consensus 297 ~~~aDri 303 (361)
....+|+
T Consensus 193 ~~~~~~~ 199 (204)
T PRK13538 193 ASDKVRK 199 (204)
T ss_pred ccCCceE
Confidence 5666676
No 287
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.8e-32 Score=248.44 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=134.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ml~~~~l~~~~~~~---~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~-- 67 (200)
T PRK13540 1 MLDVIELDFDYHDQ---PL---LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKK-- 67 (200)
T ss_pred CEEEEEEEEEeCCe---eE---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCcccc--
Confidence 47899999999753 45 666999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.....+..++|++|++.+++. ++.+|+.++... .. ....+.++++.+++..
T Consensus 68 --------------~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~----~~--~~~~~~~~l~~~~l~~-------- 119 (200)
T PRK13540 68 --------------DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF----SP--GAVGITELCRLFSLEH-------- 119 (200)
T ss_pred --------------CHHHHHhheEEeccccccCcCCCHHHHHHHHHhc----Cc--chHHHHHHHHHcCCch--------
Confidence 011224467888888777654 888998865321 11 1245677888888876
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~ 297 (361)
.+++++.+||+||+||++||||| |||+++||. +.|||++|| ....
T Consensus 120 ---------~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 120 ---------LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred ---------hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 34778899999999999999999 999999753 789999999 5555
Q ss_pred cccchh
Q 018083 298 SLTDRA 303 (361)
Q Consensus 298 ~~aDri 303 (361)
..||.-
T Consensus 191 ~~~d~~ 196 (200)
T PRK13540 191 NKADYE 196 (200)
T ss_pred cccchh
Confidence 668876
No 288
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=2.1e-32 Score=311.65 Aligned_cols=213 Identities=13% Similarity=0.090 Sum_probs=166.6
Q ss_pred hhhhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 61 QRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
.+....|+.++++.+++.... ..+.++++|++++|++....++ |+|+||+|++|+.++|+||||||||||+
T Consensus 584 a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl 660 (1495)
T PLN03232 584 ANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT---LSDINLEIPVGSLVAIVGGTGEGKTSLI 660 (1495)
T ss_pred HHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce---eeeeEEEEcCCCEEEEECCCCCcHHHHH
Confidence 344455999999765432111 1235899999999975311245 6669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|.|.++ |++|.+. ..++.++||+|++.+|..||++||.++..
T Consensus 661 ~lLlG~~~-----~~~G~i~---------------------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~---- 704 (1495)
T PLN03232 661 SAMLGELS-----HAETSSV---------------------------VIRGSVAYVPQVSWIFNATVRENILFGSD---- 704 (1495)
T ss_pred HHHhCCCc-----ccCCCEE---------------------------EecCcEEEEcCccccccccHHHHhhcCCc----
Confidence 99999999 9988652 13456899999999999999999998753
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
..+++..++++.+++.+++...++++.++|++. ...||||||||++||||+ |||+++||.
T Consensus 705 ----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~------G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~ 774 (1495)
T PLN03232 705 ----FESERYWRAIDVTALQHDLDLLPGRDLTEIGER------GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAH 774 (1495)
T ss_pred ----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC------CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 123556667777787765555555555655553 457999999999999999 999999763
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 775 t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii-~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 775 VAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRII-LVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEE-EEeCCEEEEecCHHHHHh
Confidence 789999999 45667899995 699999999999988764
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=2.4e-32 Score=244.59 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=119.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+... .++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~~~-~~~---l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~---- 67 (178)
T cd03247 1 LSINNVSFSYPEQE-QQV---LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVS---- 67 (178)
T ss_pred CEEEEEEEEeCCCC-ccc---eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHH----
Confidence 57899999997532 135 667999999999999999999999999999999999 99999999997653
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.. ....+..++|++|++.+++.++.+|+
T Consensus 68 -----------~~-~~~~~~~i~~~~q~~~~~~~tv~~~i---------------------------------------- 95 (178)
T cd03247 68 -----------DL-EKALSSLISVLNQRPYLFDTTLRNNL---------------------------------------- 95 (178)
T ss_pred -----------HH-HHHHHhhEEEEccCCeeecccHHHhh----------------------------------------
Confidence 11 11234456777877655433443332
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~ 299 (361)
+.+|||||+||++||||| |||+++||. +.|||++|| +.+ ..
T Consensus 96 ------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~-~~ 162 (178)
T cd03247 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI-EH 162 (178)
T ss_pred ------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-Hh
Confidence 457999999999999999 999999752 789999999 444 56
Q ss_pred cchhhHhhhhhhhcCCC
Q 018083 300 TDRARIRTYLGELLGIP 316 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g 316 (361)
||+++ +|++|++++.|
T Consensus 163 ~d~~~-~l~~g~i~~~~ 178 (178)
T cd03247 163 MDKIL-FLENGKIIMQG 178 (178)
T ss_pred CCEEE-EEECCEEEecC
Confidence 99996 59999987653
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=4e-32 Score=242.28 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=115.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++.. .++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~-~~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~---- 67 (173)
T cd03246 1 LEVENVSFRYPGAE-PPV---LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADIS---- 67 (173)
T ss_pred CEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcc----
Confidence 57899999997532 135 666999999999999999999999999999999999 99999999997764
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..+++++|++.+++.++.+|+
T Consensus 68 -----------~~~~~~~~~~i~~~~q~~~~~~~tv~~~l---------------------------------------- 96 (173)
T cd03246 68 -----------QWDPNELGDHVGYLPQDDELFSGSIAENI---------------------------------------- 96 (173)
T ss_pred -----------cCCHHHHHhheEEECCCCccccCcHHHHC----------------------------------------
Confidence 11112234557777887654332322221
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~ 299 (361)
|||||+||++||||| ||||++||. ++|||++|| .....+
T Consensus 97 ---------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred ---------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999999999999 999999753 789999999 233367
Q ss_pred cchhhHhhhhhhh
Q 018083 300 TDRARIRTYLGEL 312 (361)
Q Consensus 300 aDri~vvl~~G~i 312 (361)
||+++ +|++|++
T Consensus 162 ~d~v~-~l~~G~i 173 (173)
T cd03246 162 ADRIL-VLEDGRV 173 (173)
T ss_pred CCEEE-EEECCCC
Confidence 99996 5998874
No 291
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=8.1e-32 Score=249.99 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=132.8
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
+.++++++.|++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~---~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 88 (224)
T cd03220 23 LGILGRKGEVGEF---WA---LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVSSL--- 88 (224)
T ss_pred hhhhhhhhhcCCe---EE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEchh---
Confidence 7889999999763 45 666999999999999999999999999999999999 999999999976530
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.. ....+.+ ..++.+|+.++.... .......++++.++++.+++.+
T Consensus 89 -----~~------------~~~~~~~------~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 134 (224)
T cd03220 89 -----LG------------LGGGFNP------ELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGD---------- 134 (224)
T ss_pred -----hc------------ccccCCC------CCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 00 0001101 013444544332111 1122334456777888889977
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||||||||++||||| |||+++||. ++|||++|| +++..
T Consensus 135 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 135 -------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 35888999999999999999999 999999753 689999999 56778
Q ss_pred ccchhhHhhhhhhhcCCC
Q 018083 299 LTDRARIRTYLGELLGIP 316 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g 316 (361)
+||+++ +|++|+++..|
T Consensus 208 ~~d~i~-~l~~G~i~~~g 224 (224)
T cd03220 208 LCDRAL-VLEKGKIRFDG 224 (224)
T ss_pred hCCEEE-EEECCEEEecC
Confidence 999996 59999987654
No 292
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=3e-32 Score=288.61 Aligned_cols=197 Identities=17% Similarity=0.187 Sum_probs=158.3
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|++++|+.+. ..++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV---LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVAT 74 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCc
Confidence 4799999999996421 1245 666999999999999999999999999999999999 999999999987651
Q ss_pred ceEeEeeeecCCCcceeeee----cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 163 TYFLQEYTIPRGSNSFSLYD----TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d----~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
....+ .+..+++++|++.+++. ++.+|+.++.... .....+.++++.++++.+++.+
T Consensus 75 ---------------~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~-- 136 (648)
T PRK10535 75 ---------------LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLED-- 136 (648)
T ss_pred ---------------CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChh--
Confidence 11111 13567888998887765 8888887643211 1223445667888999999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiT 292 (361)
..++.+.+||+||+||++||||| |||+++||. +.|+|++|
T Consensus 137 ---------------~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivs 201 (648)
T PRK10535 137 ---------------RVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVT 201 (648)
T ss_pred ---------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 45889999999999999999999 999999753 79999999
Q ss_pred c-CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 293 H-GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 293 H-~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
| .+....|||++ +|++|++++.|++++..
T Consensus 202 H~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 202 HDPQVAAQAERVI-EIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCHHHHHhCCEEE-EEECCEEEeecCccccc
Confidence 9 34446799996 59999999999999886
No 293
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=5.6e-32 Score=244.25 Aligned_cols=152 Identities=16% Similarity=0.214 Sum_probs=119.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++... .......+..
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-------------~~~~~~~~~~ 69 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDYS-------------RKGLLERRQR 69 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEcccc-------------ccchHHHHhh
Confidence 566999999999999999999999999999999999 9999999999876300 0011123445
Q ss_pred CcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 187 SDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 187 i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
+++++|++. ++..++.+|+.++.... ..+.....+++.++++.+++.+ .+++++.+||||
T Consensus 70 i~~~~q~~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G 131 (190)
T TIGR01166 70 VGLVFQDPDDQLFAADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASG-----------------LRERPTHCLSGG 131 (190)
T ss_pred EEEEecChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchh-----------------hhhCChhhCCHH
Confidence 788899873 44458889988753311 1222344567788899999987 458899999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 294 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~ 294 (361)
||||++||||| ||||++||. ++|||++||+
T Consensus 132 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 132 EKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 99999999999 999999753 7899999993
No 294
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=7.3e-33 Score=270.90 Aligned_cols=173 Identities=14% Similarity=0.199 Sum_probs=141.6
Q ss_pred EEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-H
Q 018083 122 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-W 200 (361)
Q Consensus 122 LvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-t 200 (361)
|+||||||||||+++|+|+++ |++|+|.++|+++.. .. ..+..++|++|++.+++. +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~---------------~~--~~~~~i~~v~q~~~l~~~~t 58 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTN---------------VP--PHLRHINMVFQSYALFPHMT 58 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC---------------CC--HHHCCEEEEecCccccCCCc
Confidence 689999999999999999999 999999999987641 11 123468899999888876 9
Q ss_pred HHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----
Q 018083 201 IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----- 275 (361)
Q Consensus 201 i~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----- 275 (361)
+.+|+.++.... ..+....++++.++++.+++.+ ++++++.+||||||||++|||||
T Consensus 59 v~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 59 VEENVAFGLKMR-KVPRAEIKPRVLEALRLVQLEE-----------------FADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCcc-----------------hhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999875421 1223344567888999999987 45899999999999999999999
Q ss_pred ----CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCc
Q 018083 276 ----NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 332 (361)
Q Consensus 276 ----DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~ 332 (361)
|||+++||. ++|+|+||| +++..+|||++ +|++|++++.|++++++..|...++..
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~-vl~~G~i~~~g~~~~~~~~~~~~~~~~ 199 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA-IMRKGKIAQIGTPEEIYEEPANLFVAR 199 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHH
Confidence 999999753 789999999 57789999996 599999999999999998876655444
Q ss_pred hhh
Q 018083 333 ELI 335 (361)
Q Consensus 333 ~~~ 335 (361)
++.
T Consensus 200 ~~~ 202 (325)
T TIGR01187 200 FIG 202 (325)
T ss_pred hcC
Confidence 443
No 295
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.6e-32 Score=241.88 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=115.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (173)
T cd03230 1 IEVRNLSKRYGKK---TA---LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKK--- 66 (173)
T ss_pred CEEEEEEEEECCe---ee---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc---
Confidence 4689999999753 45 666999999999999999999999999999999999 999999999977641
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.. .+.+..++|++|++.+++. ++.+|+
T Consensus 67 ------------~~-~~~~~~i~~~~q~~~~~~~~tv~~~~--------------------------------------- 94 (173)
T cd03230 67 ------------EP-EEVKRRIGYLPEEPSLYENLTVRENL--------------------------------------- 94 (173)
T ss_pred ------------ch-HhhhccEEEEecCCccccCCcHHHHh---------------------------------------
Confidence 11 2234557788888655432 332221
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~ 297 (361)
. |||||+||++||||| ||||++||. |.|+|++|| ..+.
T Consensus 95 ----------~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 95 ----------K-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred ----------h-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 0 999999999999999 999999753 689999999 4566
Q ss_pred cccchhhHhhhhhhh
Q 018083 298 SLTDRARIRTYLGEL 312 (361)
Q Consensus 298 ~~aDri~vvl~~G~i 312 (361)
.+||+++ +|++|++
T Consensus 160 ~~~d~i~-~l~~g~i 173 (173)
T cd03230 160 RLCDRVA-ILNNGRI 173 (173)
T ss_pred HhCCEEE-EEeCCCC
Confidence 7899996 5998864
No 296
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=8.7e-32 Score=245.60 Aligned_cols=174 Identities=19% Similarity=0.185 Sum_probs=125.6
Q ss_pred cccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++||+++|++.. ...+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~i---l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g------ 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT---LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG------ 66 (204)
T ss_pred CEEeEEEEecCCCCccccce---eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC------
Confidence 57899999997642 0135 666999999999999999999999999999999999 9999999987
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.++|++|++.+++.++.+|+.++... . . ++..++++.+++...+...+..
T Consensus 67 ----------------------~i~~~~q~~~l~~~t~~enl~~~~~~----~-~---~~~~~~~~~~~l~~~~~~~~~~ 116 (204)
T cd03250 67 ----------------------SIAYVSQEPWIQNGTIRENILFGKPF----D-E---ERYEKVIKACALEPDLEILPDG 116 (204)
T ss_pred ----------------------EEEEEecCchhccCcHHHHhccCCCc----C-H---HHHHHHHHHcCcHHHHHhccCc
Confidence 15566777777766899999875331 1 1 1122223333332211000000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
-...+++.+.+||+|||||++||||| |||+++||. +.|||++|| ..
T Consensus 117 ------~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 117 ------DLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred ------ccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 00023567889999999999999999 999999642 689999999 34
Q ss_pred cccccchhhHhhhhhh
Q 018083 296 LLSLTDRARIRTYLGE 311 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~ 311 (361)
+.. ||+++ +|++|+
T Consensus 191 ~~~-~d~i~-~l~~G~ 204 (204)
T cd03250 191 LPH-ADQIV-VLDNGR 204 (204)
T ss_pred Hhh-CCEEE-EEeCCC
Confidence 555 99996 588874
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=2e-32 Score=313.51 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=162.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.|+++||++.|+++. ..+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 926 ~~~L~I~nLsK~y~~~~-k~a---L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSG-RPA---VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIET 996 (2272)
T ss_pred CceEEEEeEEEEecCCC-ceE---EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECcc
Confidence 35799999999996322 256 555999999999999999999999999999999999 999999999988741
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.....+..+++++|+..+++. ++.+|+.+..... ..+.++.++++.++++.++|.+
T Consensus 997 ----------------~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk-g~~~~~~~~~v~~lL~~vgL~~------ 1053 (2272)
T TIGR01257 997 ----------------NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK-GRSWEEAQLEMEAMLEDTGLHH------ 1053 (2272)
T ss_pred ----------------hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 112235568889998877766 8999998754322 2233455677888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~ 295 (361)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| ++
T Consensus 1054 -----------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmde 1122 (2272)
T TIGR01257 1054 -----------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDE 1122 (2272)
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 45899999999999999999999 999999763 899999999 67
Q ss_pred cccccchhhHhhhhhhhcCCCCcccccc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+..+||||+ +|++|+++..|++..+..
T Consensus 1123 a~~laDrI~-iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1123 ADLLGDRIA-IISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHhCCEEE-EEECCEEEEecCHHHHHH
Confidence 778999996 599999999999877644
No 298
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=2.8e-32 Score=312.25 Aligned_cols=198 Identities=12% Similarity=0.080 Sum_probs=162.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+|+++||++.|+++. ..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~-~~a---L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~ 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTS-SPA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILT 2005 (2272)
T ss_pred CceEEEEEEEEEECCCC-ceE---EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcc
Confidence 35799999999997532 246 556999999999999999999999999999999999 999999999988741
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
...+.+..++|++|+..++.. ++.+++.+.... ++.+.+..++.+.++++.++|.+
T Consensus 2006 ----------------~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l-~g~~~~~~~~~v~~lLe~lgL~~------ 2062 (2272)
T TIGR01257 2006 ----------------NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL-RGVPAEEIEKVANWSIQSLGLSL------ 2062 (2272)
T ss_pred ----------------hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHH------
Confidence 111234568889998777765 888888764322 12333445667788899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||+|| ||||++||+ |+|||++|| +
T Consensus 2063 -----------~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2063 -----------YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45899999999999999999999 999999763 899999999 6
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++..+|||+++ |++|+++..|+++++...
T Consensus 2132 e~e~lcDrV~I-L~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2132 ECEALCTRLAI-MVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHHH
Confidence 88899999975 999999999999887443
No 299
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=3.9e-32 Score=310.58 Aligned_cols=212 Identities=15% Similarity=0.097 Sum_probs=167.1
Q ss_pred hhhhhHHHHHHHHhHHHHHh--h----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 61 QRRRDAVFREVLQSYDQLRT--R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~--~----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
.+....|+.++++.++.... . ..+.++++|++++|++....++ |+|+||+|++|+.++|+||+|||||||+
T Consensus 584 a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl 660 (1622)
T PLN03130 584 ANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT---LSNINLDVPVGSLVAIVGSTGEGKTSLI 660 (1622)
T ss_pred HHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce---eeceeEEecCCCEEEEECCCCCCHHHHH
Confidence 33445599999965432111 1 1235999999999975321245 6669999999999999999999999999
Q ss_pred hhhhhhhccccccccc-ceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 135 NRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~-G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
++|.|.++ |++ |+|.+ ++.++||+|++.+|..||++||.++..
T Consensus 661 ~lLlG~~~-----~~~GG~I~l----------------------------~~~Iayv~Q~p~LfngTIreNI~fg~~--- 704 (1622)
T PLN03130 661 SAMLGELP-----PRSDASVVI----------------------------RGTVAYVPQVSWIFNATVRDNILFGSP--- 704 (1622)
T ss_pred HHHHHhhc-----cCCCceEEE----------------------------cCeEEEEcCccccCCCCHHHHHhCCCc---
Confidence 99999999 999 88864 235788999999999999999998754
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
..+++..++++.+++.+++...+++..++|++ ....||||||||++||||+ |||+++||.
T Consensus 705 -----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe------~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 705 -----FDPERYERAIDVTALQHDLDLLPGGDLTEIGE------RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773 (1622)
T ss_pred -----ccHHHHHHHHHHhCcHHHHHhCCCcccccccC------CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 12456677788888877665555666665555 3457999999999999999 999999763
Q ss_pred ----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 ----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 774 ~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii-~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 774 HVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRII-LVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEE-EEeCCEEEEeCCHHHHHh
Confidence 789999999 45667899995 699999999999988864
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.3e-31 Score=274.88 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=143.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeeccccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~G~~i 160 (361)
..++|+++|+++.|++. .+ |+++||+|++||+++|+||||||||||+++|+|+.+ + ++|+|+++|+++
T Consensus 257 ~~~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~ 325 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDR---PI---LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRR 325 (490)
T ss_pred CCceEEEeceEEEECCe---eE---EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccC
Confidence 34589999999999753 35 666999999999999999999999999999999876 5 699999999765
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH---HHHhccccceeEE---ecCCChhhhhhhcccccccCCC
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL---WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~---ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~gl~ 234 (361)
.. .......+..+++++|++.++.. ++.+++.++.... ........++++.++++.+++.
T Consensus 326 ~~--------------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 326 GS--------------GETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred CC--------------CCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 21 00111234568889998765432 4444443332100 0011123345678889999997
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------C-ccE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPV 288 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g-~tv 288 (361)
+. .+++++.+||||||||++||||| ||||++||. + .||
T Consensus 392 ~~----------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tv 455 (490)
T PRK10938 392 KR----------------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQL 455 (490)
T ss_pred hh----------------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 52 23889999999999999999999 999999763 4 469
Q ss_pred EEEEc--Ccccc-ccchhhHhhhhhhhcCCCC
Q 018083 289 VVVTH--GDLLS-LTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 289 IiiTH--~~~~~-~aDri~vvl~~G~iv~~g~ 317 (361)
|++|| +++.. +||+++ +|++|+++..-.
T Consensus 456 iivsHd~~~~~~~~~d~v~-~l~~G~i~~~~~ 486 (490)
T PRK10938 456 LFVSHHAEDAPACITHRLE-FVPDGDIYRYVQ 486 (490)
T ss_pred EEEecchhhhhhhhheeEE-EecCCceEEeec
Confidence 99999 45665 589996 599999877543
No 301
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.1e-32 Score=278.78 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=147.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.+++++++.. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 257 ~l~~~~~~~~-------~~---l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~~~- 320 (501)
T PRK11288 257 RLRLDGLKGP-------GL---REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIR- 320 (501)
T ss_pred EEEEeccccC-------Cc---ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECCCC-
Confidence 5788888732 24 666999999999999999999999999999999999 9999999999876410
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhccccceeEEe---c--CCChhhhhhhcccccccCCC-
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELVIR---R--SDSSSLRNRMRCKAHKIGCE- 234 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~~~---~--~~~~~~~~~v~~~l~~~gl~- 234 (361)
......+..++|++|++. +++. ++.+|+.++..... . ......++.+.++++.+++.
T Consensus 321 -------------~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 387 (501)
T PRK11288 321 -------------SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387 (501)
T ss_pred -------------CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc
Confidence 001122456788999864 5554 88899887542110 0 01222345677889999994
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
+ .+++++.+||||||||++||||| ||||++||. |.|||
T Consensus 388 ~-----------------~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi 450 (501)
T PRK11288 388 P-----------------SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450 (501)
T ss_pred C-----------------CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEE
Confidence 4 34889999999999999999999 999999753 88999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++|| +++..+||+++ +|++|++++.|+++++
T Consensus 451 ivsHd~~~~~~~~d~i~-~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 451 FVSSDLPEVLGVADRIV-VMREGRIAGELAREQA 483 (501)
T ss_pred EECCCHHHHHhhCCEEE-EEECCEEEEEEccccC
Confidence 9999 57889999996 5999999988877544
No 302
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=9.4e-32 Score=249.27 Aligned_cols=168 Identities=16% Similarity=0.226 Sum_probs=132.9
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 191 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~ 191 (361)
|+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++. +.+..++|++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~--------------------~~~~~i~~v~ 55 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPG--------------------KGWRHIGYVP 55 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccch--------------------HhhCcEEEec
Confidence 6789999999999999999999999999999 99999999997642 1134567788
Q ss_pred cchHHH---HHHHHhccccceeEE-e--cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 192 DNINMI---KLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 192 q~~~l~---~~ti~~ni~~~~~~~-~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
|++.++ +.++.+|+.++.... . .......++++.++++.+++.+ ..++++.+|||||
T Consensus 56 q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~ 118 (223)
T TIGR03771 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-----------------LADRPVGELSGGQ 118 (223)
T ss_pred ccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-----------------hhcCChhhCCHHH
Confidence 876542 236778877653211 0 0112233456788899999986 3488899999999
Q ss_pred hhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 266 QYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 266 rQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
|||++||||| ||||++||. +.|+|++|| +++..+||+++ ++ +|+++..|++
T Consensus 119 ~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~-~l-~G~i~~~~~~ 196 (223)
T TIGR03771 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVV-LL-NGRVIADGTP 196 (223)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE-EE-CCEEEeecCH
Confidence 9999999999 999999753 789999999 46778999996 48 7999999988
Q ss_pred ccccc
Q 018083 319 KQIFD 323 (361)
Q Consensus 319 ~~i~~ 323 (361)
+++..
T Consensus 197 ~~~~~ 201 (223)
T TIGR03771 197 QQLQD 201 (223)
T ss_pred HHhcC
Confidence 87755
No 303
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=6.9e-32 Score=278.50 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=145.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 266 ~~~l~~~~l~~~--------~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 329 (510)
T PRK15439 266 APVLTVEDLTGE--------G---FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINA 329 (510)
T ss_pred CceEEEeCCCCC--------C---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCC
Confidence 447999999831 2 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceeee-ecCCCCcccccchH---HHHH-HHHhccccceeE--EecCCChhhhhhhcccccccCCC-
Q 018083 163 TYFLQEYTIPRGSNSFSLY-DTRSLSDDASDNIN---MIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCE- 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~v~~~l~~~gl~- 234 (361)
.... ..+..++|++|++. +++. ++.+|+...... .........++++.++++.+++.
T Consensus 330 ---------------~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 394 (510)
T PRK15439 330 ---------------LSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF 394 (510)
T ss_pred ---------------CCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC
Confidence 0000 12345788888742 4444 677776432100 00011222345677889999996
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
. .+++++.+||||||||++||||| ||||++||. |.|||
T Consensus 395 ~-----------------~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiI 457 (510)
T PRK15439 395 N-----------------HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL 457 (510)
T ss_pred C-----------------CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEE
Confidence 4 34889999999999999999999 999999753 78999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++|| +++..+|||++ +|++|+++..++++++
T Consensus 458 ivsHd~~~i~~~~d~i~-~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 458 FISSDLEEIEQMADRVL-VMHQGEISGALTGAAI 490 (510)
T ss_pred EECCCHHHHHHhCCEEE-EEECCEEEEEEccccC
Confidence 9999 57789999996 5999999988877554
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-31 Score=275.60 Aligned_cols=191 Identities=14% Similarity=0.149 Sum_probs=139.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|. ++ |+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 248 ~~~i~~~~l~~~~~-----~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 248 EVILEVRNLTSLRQ-----PS---IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN 314 (491)
T ss_pred CcEEEEeCcccccC-----cc---cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence 34799999999752 34 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceee-eecCCCCcccccchH---HHHH-HHHhc-----cccceeEEecCCChhhhhhhcccccccC
Q 018083 163 TYFLQEYTIPRGSNSFSL-YDTRSLSDDASDNIN---MIKL-WIMEG-----VRHGELVIRRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~-~d~r~~i~~v~q~~~---l~~~-ti~~n-----i~~~~~~~~~~~~~~~~~~v~~~l~~~g 232 (361)
... ...+..++|++|+.. +++. ++.+| +.+.............++.+.++++.++
T Consensus 315 ---------------~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (491)
T PRK10982 315 ---------------HNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR 379 (491)
T ss_pred ---------------CCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcC
Confidence 000 011234666676642 2332 33333 3211110000122334456777888888
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
+... .+++++.+||||||||++||||| ||||++||. |.|
T Consensus 380 l~~~----------------~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~t 443 (491)
T PRK10982 380 VKTP----------------GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443 (491)
T ss_pred ccCC----------------CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCE
Confidence 8531 24889999999999999999999 999999763 899
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
||++|| +++..+|||++ +|++|+++..+++
T Consensus 444 vi~vsHd~~~~~~~~d~v~-~l~~g~i~~~~~~ 475 (491)
T PRK10982 444 IIIISSEMPELLGITDRIL-VMSNGLVAGIVDT 475 (491)
T ss_pred EEEECCChHHHHhhCCEEE-EEECCEEEEEEcc
Confidence 999999 57789999996 5999999865544
No 305
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=8.9e-32 Score=244.51 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=124.1
Q ss_pred ccccccceeeecCcc---eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh--cccccccccceeeecccc
Q 018083 85 LTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSV 159 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~---~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~G~I~i~G~~ 159 (361)
.|+++|++++|+... ..++ |+++||+|++|++++|+||||||||||+++|+|++ + |++|+|.++|++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~---l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g~~ 74 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL---LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLINGRP 74 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc---eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEe
Confidence 478999999997520 0245 66699999999999999999999999999999999 8 999999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+.. ...+..+++++|++.+++. ++.+|+.++.
T Consensus 75 ~~~------------------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~----------------------------- 107 (194)
T cd03213 75 LDK------------------RSFRKIIGYVPQDDILHPTLTVRETLMFAA----------------------------- 107 (194)
T ss_pred Cch------------------HhhhheEEEccCcccCCCCCcHHHHHHHHH-----------------------------
Confidence 641 0234457788888766554 6655554210
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
...+|||||+||++||||| |||+++||. ++|+|++||
T Consensus 108 ------------------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 108 ------------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred ------------------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0017999999999999998 999999753 789999999
Q ss_pred C---ccccccchhhHhhhhhhhcCC
Q 018083 294 G---DLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 294 ~---~~~~~aDri~vvl~~G~iv~~ 315 (361)
+ .+..+||+++ +|++|+++..
T Consensus 170 ~~~~~~~~~~d~v~-~l~~G~i~~~ 193 (194)
T cd03213 170 QPSSEIFELFDKLL-LLSQGRVIYF 193 (194)
T ss_pred CchHHHHHhcCEEE-EEeCCEEEec
Confidence 3 3568899996 5999998754
No 306
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-31 Score=240.31 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=114.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|+.. ++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~---~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (178)
T cd03229 1 LELKNVSKRYGQK---TV---LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTD--- 66 (178)
T ss_pred CEEEEEEEEECCe---EE---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc---
Confidence 4689999999653 45 666999999999999999999999999999999999 999999999987641
Q ss_pred eEeeeecCCCccee--eeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 166 LQEYTIPRGSNSFS--LYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 166 ~~~~~i~~~~~~~~--~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ....+..+++++|++.+++. ++.+|+.+
T Consensus 67 ------------~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~----------------------------------- 99 (178)
T cd03229 67 ------------LEDELPPLRRRIGMVFQDFALFPHLTVLENIAL----------------------------------- 99 (178)
T ss_pred ------------cchhHHHHhhcEEEEecCCccCCCCCHHHheee-----------------------------------
Confidence 11 12234456777777654332 33222220
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
.||||||||++||||| |||+++||. +.|+|++|| .
T Consensus 100 -----------------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 100 -----------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred -----------------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1999999999999999 999999752 589999999 4
Q ss_pred ccccccchhhHhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGE 311 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~ 311 (361)
.+..+||+++ +|++|+
T Consensus 163 ~~~~~~d~i~-~l~~g~ 178 (178)
T cd03229 163 EAARLADRVV-VLRDGK 178 (178)
T ss_pred HHHHhcCEEE-EEeCCC
Confidence 6667899996 488774
No 307
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=1.7e-31 Score=243.67 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=122.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeecccccCcc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++|++++|++. .+ |+++||+|.+|++++|+||||||||||+++|+|+ ++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~~~~- 68 (200)
T cd03217 1 LEIKDLHVSVGGK---EI---LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGEDITD- 68 (200)
T ss_pred CeEEEEEEEeCCE---Ee---eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEECCc-
Confidence 5689999999752 45 6669999999999999999999999999999999 46 899999999987651
Q ss_pred eEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..... .+..++|++|++.+++. ++.+++
T Consensus 69 --------------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l------------------------------------ 98 (200)
T cd03217 69 --------------LPPEERARLGIFLAFQYPPEIPGVKNADFL------------------------------------ 98 (200)
T ss_pred --------------CCHHHHhhCcEEEeecChhhccCccHHHHH------------------------------------
Confidence 11111 12347888888765432 221111
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
+..+.+|||||+||++||||| ||||++||. ++|||++|| +
T Consensus 99 -------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~ 165 (200)
T cd03217 99 -------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165 (200)
T ss_pred -------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 223458999999999999999 999999752 789999999 4
Q ss_pred cccc-ccchhhHhhhhhhhcCCCCc
Q 018083 295 DLLS-LTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 295 ~~~~-~aDri~vvl~~G~iv~~g~~ 318 (361)
.+.. +||+++ +|++|++++.|+.
T Consensus 166 ~~~~~~~d~i~-~l~~G~i~~~~~~ 189 (200)
T cd03217 166 LLDYIKPDRVH-VLYDGRIVKSGDK 189 (200)
T ss_pred HHHHhhCCEEE-EEECCEEEEEccH
Confidence 5555 799996 5999999988844
No 308
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-31 Score=245.15 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=129.6
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+.++|++|.|+.+ ....+ |+++||+|++|++++|+||||||||||+++|+|++++.. |++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~~~~- 76 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI---LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIPYKE- 76 (202)
T ss_pred eEEEEccEEEeccCCCCcee---eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEECcc-
Confidence 57899999999753 12356 666999999999999999999999999999999987211 579999999987641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ...+..++|++|+..+++. ++.+|+.+.... . .
T Consensus 77 --------------~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------~-------~----- 112 (202)
T cd03233 77 --------------FA-EKYPGEIIYVSEEDVHFPTLTVRETLDFALRC-----------------K-------G----- 112 (202)
T ss_pred --------------ch-hhhcceEEEEecccccCCCCcHHHHHhhhhhh-----------------c-------c-----
Confidence 11 1234567888888777665 888887643210 0 1
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc---
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--- 293 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--- 293 (361)
++++.+||+||+||++||||| |||+++||. +.|+|++||
T Consensus 113 ------------~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~ 180 (202)
T cd03233 113 ------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQAS 180 (202)
T ss_pred ------------ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCH
Confidence 566789999999999999999 999999753 456666655
Q ss_pred CccccccchhhHhhhhhhhcCCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g 316 (361)
+++..+||+++ +|++|+++..|
T Consensus 181 ~~~~~~~d~i~-~l~~G~i~~~g 202 (202)
T cd03233 181 DEIYDLFDKVL-VLYEGRQIYYG 202 (202)
T ss_pred HHHHHhCCeEE-EEECCEEEecC
Confidence 35678999996 59999987653
No 309
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.3e-31 Score=240.72 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=117.4
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++| + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~-------~---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~- 66 (182)
T cd03215 3 PVLEVRGLSVKG-------A---VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTR- 66 (182)
T ss_pred cEEEEeccEEEe-------e---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCc-
Confidence 479999999998 2 777999999999999999999999999999999999 999999999987641
Q ss_pred eEeEeeeecCCCccee-eeecCCCCcccccchH---HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 164 YFLQEYTIPRGSNSFS-LYDTRSLSDDASDNIN---MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~-~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. ....+..++|++|++. +++. ++.+|+.+.
T Consensus 67 --------------~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~------------------------------ 102 (182)
T cd03215 67 --------------RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS------------------------------ 102 (182)
T ss_pred --------------cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH------------------------------
Confidence 11 0122445788888742 3322 444443310
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
. .||+|||||++||||| |||+++||. +.|+|++||
T Consensus 103 ----------------~----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 162 (182)
T cd03215 103 ----------------S----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162 (182)
T ss_pred ----------------h----hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 0 1999999999999999 999999753 789999999
Q ss_pred --CccccccchhhHhhhhhhh
Q 018083 294 --GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~i 312 (361)
.++.++||+++ +|++|++
T Consensus 163 ~~~~~~~~~d~v~-~l~~G~i 182 (182)
T cd03215 163 ELDELLGLCDRIL-VMYEGRI 182 (182)
T ss_pred CHHHHHHhCCEEE-EecCCcC
Confidence 46788999996 5999874
No 310
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-32 Score=266.05 Aligned_cols=201 Identities=10% Similarity=0.119 Sum_probs=169.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.+.+.+++|.|.+.. +. |+++||++++|+.++++||+|+||||++++|.++|+ +++|.|.+||++++
T Consensus 262 ~v~F~~V~F~y~~~r--~i---L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-----~~sG~I~id~qdir--- 328 (497)
T COG5265 262 AVAFINVSFAYDPRR--PI---LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-----VNSGSITIDGQDIR--- 328 (497)
T ss_pred eEEEEEEEeeccccc--hh---hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-----CcCceEEEcchhHH---
Confidence 367899999998765 44 666999999999999999999999999999999999 99999999999997
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
....+..|+.+++|||+.-+|..++..|+.++-. ....+++..+++.+.+.+.+..-|.++
T Consensus 329 ------------~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-------~at~eev~aaa~~aqi~~fi~~lP~gy 389 (497)
T COG5265 329 ------------DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-------DATAEEVGAAAEAAQIHDFIQSLPEGY 389 (497)
T ss_pred ------------HhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-------cccHHHHHHHHHHhhhhHHHHhCchhh
Confidence 4566677889999999999999999999997655 445567777888888877655555555
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~~ 299 (361)
..-|.+..+ -||||||||+||||++ ||.||+||. |.|.|+|.| -.-.--
T Consensus 390 ~t~Vgergl------klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~ 463 (497)
T COG5265 390 DTGVGERGL------KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID 463 (497)
T ss_pred hcccchhee------eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC
Confidence 555555433 4999999999999998 999999752 899999999 344455
Q ss_pred cchhhHhhhhhhhcCCCCccccccC
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
||.|+ ||++|+|++.|+|++++..
T Consensus 464 adeii-vl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 464 ADEII-VLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CceEE-EeeCCEEEecCcHHHHHHc
Confidence 99995 6999999999999999876
No 311
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.7e-31 Score=244.81 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=128.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|+++.|+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (207)
T PRK13539 2 MLEGEDLACVRGGR---VL---FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDD-- 68 (207)
T ss_pred EEEEEeEEEEECCe---EE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcc--
Confidence 58999999999753 45 566999999999999999999999999999999999 999999999976430
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
. ..+..+++++|...+++. ++.+|+.+..... . ...+++.++++.+++.+
T Consensus 69 -------------~---~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~--~~~~~~~~~l~~~~l~~-------- 119 (207)
T PRK13539 69 -------------P---DVAEACHYLGHRNAMKPALTVAENLEFWAAFL---G--GEELDIAAALEAVGLAP-------- 119 (207)
T ss_pred -------------h---hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---C--CcHHHHHHHHHHcCCHH--------
Confidence 0 023345666665544433 7778876532211 1 11245778899999976
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 296 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~ 296 (361)
+.++++.+||||||||++||||| ||||++||. +.|||++|| +++
T Consensus 120 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 120 ---------LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred ---------HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 34788999999999999999999 999999753 899999999 334
Q ss_pred ccccchh
Q 018083 297 LSLTDRA 303 (361)
Q Consensus 297 ~~~aDri 303 (361)
.. |++
T Consensus 191 ~~--~~~ 195 (207)
T PRK13539 191 PG--ARE 195 (207)
T ss_pred cc--CcE
Confidence 33 877
No 312
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.1e-31 Score=279.80 Aligned_cols=186 Identities=12% Similarity=0.088 Sum_probs=138.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||+++|+++ ..+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++..
T Consensus 4 ~~~l~i~~l~~~y~~~--~~i---l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~~--- 70 (556)
T PRK11819 4 QYIYTMNRVSKVVPPK--KQI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPGI--- 70 (556)
T ss_pred cEEEEEeeEEEEeCCC--Cee---eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC---
Confidence 4589999999999722 245 666999999999999999999999999999999999 999999986421
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEE--------------ecC------------
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVI--------------RRS------------ 215 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--------------~~~------------ 215 (361)
.++|++|++.+++. ++.+|+.++.... ...
T Consensus 71 -----------------------~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (556)
T PRK11819 71 -----------------------KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQG 127 (556)
T ss_pred -----------------------EEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 13344444433332 4455544331100 000
Q ss_pred ---------CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CC
Q 018083 216 ---------DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NC 277 (361)
Q Consensus 216 ---------~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DE 277 (361)
...+..+++.++++.+++.. +++++.+||||||||++||||| ||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDE 189 (556)
T PRK11819 128 ELQEIIDAADAWDLDSQLEIAMDALRCPP------------------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDE 189 (556)
T ss_pred HHHHHHHhcCccchHHHHHHHHHhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 00112456777888888853 2788999999999999999999 99
Q ss_pred CceeecC-------------CccEEEEEc--CccccccchhhHhhhhhhhc-CCCCcccccc
Q 018083 278 PYLSFRD-------------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 323 (361)
Q Consensus 278 Pt~~L~~-------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i~~ 323 (361)
||++||. +.|||+||| +.+..+||+|+ +|++|+++ ..|+.+++..
T Consensus 190 Pt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 190 PTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL-ELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE-EEeCCEEEEecCCHHHHHH
Confidence 9999874 569999999 56778999996 59999986 6787766543
No 313
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=2.6e-31 Score=244.79 Aligned_cols=188 Identities=16% Similarity=0.216 Sum_probs=132.4
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
.+.|+.++|+... ++ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 2 ~~~~~~~~~~~~~--~i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~- 70 (218)
T cd03290 2 QVTNGYFSWGSGL--AT---LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSF- 70 (218)
T ss_pred eeeeeEEecCCCC--cc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCcccccccc-
Confidence 4678999997553 45 666999999999999999999999999999999999 999999999987641000
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
.......+..++|++|++.++..++.+|+.+.... . .+++.++++.+++.+.+.. .-
T Consensus 71 ----------~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~----~----~~~~~~~~~~~~l~~~~~~----~~- 127 (218)
T cd03290 71 ----------EATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF----N----KQRYKAVTDACSLQPDIDL----LP- 127 (218)
T ss_pred ----------cccchhhcceEEEEcCCCccccccHHHHHhhcCcC----C----HHHHHHHHHHhCcHHHHHh----Cc-
Confidence 00011234557889999887766899999864321 1 1122334455554331100 00
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC------------------CccEEEEEc--Cccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~------------------g~tvIiiTH--~~~~ 297 (361)
......++.++..||||||||++||||| ||||++||. +.|+|++|| ..+
T Consensus 128 -~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~- 205 (218)
T cd03290 128 -FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL- 205 (218)
T ss_pred -CccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-
Confidence 0000013567889999999999999999 999999642 689999999 344
Q ss_pred cccchhhHhhhhhh
Q 018083 298 SLTDRARIRTYLGE 311 (361)
Q Consensus 298 ~~aDri~vvl~~G~ 311 (361)
..||+++ +|++|.
T Consensus 206 ~~~d~i~-~l~~G~ 218 (218)
T cd03290 206 PHADWII-AMKDGS 218 (218)
T ss_pred hhCCEEE-EecCCC
Confidence 5799995 588763
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.6e-32 Score=279.23 Aligned_cols=185 Identities=13% Similarity=0.133 Sum_probs=134.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|... .++
T Consensus 1 ml~i~~ls~~~~~~---~i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~~-i~~ 68 (530)
T PRK15064 1 MLSTANITMQFGAK---PL---FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPNER-LGK 68 (530)
T ss_pred CEEEEEEEEEeCCc---Ee---EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE-EEE
Confidence 47899999999753 45 666999999999999999999999999999999999 9999999987321 122
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhcccccee----------------EE---------------
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGEL----------------VI--------------- 212 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~----------------~~--------------- 212 (361)
.+| ++.++.. ++.+++.++.. ..
T Consensus 69 ~~q-------------------------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (530)
T PRK15064 69 LRQ-------------------------DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKF 123 (530)
T ss_pred Eec-------------------------cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 222 1111111 22222211100 00
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
......+.++++.++++.+++.+. ..++++.+||||||||++||||| ||||++||
T Consensus 124 ~~~~~~~~~~~~~~~l~~~gl~~~----------------~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD 187 (530)
T PRK15064 124 AEMDGYTAEARAGELLLGVGIPEE----------------QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187 (530)
T ss_pred HhcCchhHHHHHHHHHHhCCCChh----------------HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 000011234567788999999752 12467899999999999999999 99999986
Q ss_pred C-------------CccEEEEEc--CccccccchhhHhhhhhhh-cCCCCcccccc
Q 018083 284 D-------------DKPVVVVTH--GDLLSLTDRARIRTYLGEL-LGIPPAKQIFD 323 (361)
Q Consensus 284 ~-------------g~tvIiiTH--~~~~~~aDri~vvl~~G~i-v~~g~~~~i~~ 323 (361)
. +.|||+||| +.+..+||+++ +|++|++ +..|+++++..
T Consensus 188 ~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 188 INTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMA-DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEE-EEeCCEEEEecCCHHHHHH
Confidence 4 889999999 56779999996 5999999 47888877654
No 315
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-31 Score=274.48 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=143.4
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++++++||++.|+.+....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~I---L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~~ 89 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYA---LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAAL 89 (549)
T ss_pred ccceeEEEEEEEecCCCccceE---EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeee
Confidence 3457899999999976432246 666999999999999999999999999999999999 99999999986421
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+. + . ..+.++ .++.+|+.+..... ..+..+..+++.++++.+++.+
T Consensus 90 ---------i~-----~---~----~~l~~~------lTV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~------ 135 (549)
T PRK13545 90 ---------IA-----I---S----SGLNGQ------LTGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGK------ 135 (549)
T ss_pred ---------EE-----e---c----cccCCC------CcHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 00 0 0 000010 14555554422111 1223344456677889999977
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 136 -----------~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 136 -----------FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred -----------HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 45889999999999999999999 999999753 789999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+..+||+++ +|++|+++..|++++++..
T Consensus 205 ~i~~l~DrIi-vL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 205 QVKSFCTKAL-WLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHhCCEEE-EEECCEEEEECCHHHHHhh
Confidence 6778999996 5999999999998877654
No 316
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-31 Score=276.21 Aligned_cols=181 Identities=11% Similarity=0.111 Sum_probs=139.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 318 ~~l~~~~l~~~~~~~---~~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~---- 382 (530)
T PRK15064 318 NALEVENLTKGFDNG---PL---FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA---- 382 (530)
T ss_pred ceEEEEeeEEeeCCc---ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce----
Confidence 479999999999753 45 666999999999999999999999999999999999 999999987632
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchH--HHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.++|++|++. ++. .++.+++.+.. .....++++.++++.+++...
T Consensus 383 ----------------------~i~~~~q~~~~~~~~~~t~~~~~~~~~------~~~~~~~~~~~~l~~~~l~~~---- 430 (530)
T PRK15064 383 ----------------------NIGYYAQDHAYDFENDLTLFDWMSQWR------QEGDDEQAVRGTLGRLLFSQD---- 430 (530)
T ss_pred ----------------------EEEEEcccccccCCCCCcHHHHHHHhc------cCCccHHHHHHHHHHcCCChh----
Confidence 1333444332 111 14445543210 011224567788999998521
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~ 296 (361)
.+++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 431 ------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 431 ------------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred ------------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 35889999999999999999999 999999864 569999999 567
Q ss_pred ccccchhhHhhhhhhhc-CCCCccccccC
Q 018083 297 LSLTDRARIRTYLGELL-GIPPAKQIFDI 324 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv-~~g~~~~i~~~ 324 (361)
..+|||++ +|++|+++ ..|++.++++.
T Consensus 499 ~~~~d~i~-~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 499 SSLATRII-EITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHhCCEEE-EEECCeEEEcCCCHHHHHHH
Confidence 78999996 59999998 78888776543
No 317
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.9e-31 Score=241.81 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=124.3
Q ss_pred cccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+|+++|+++.|++.. ..++ |+++||+|++|++++|+||||||||||+++|+|++... |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~- 74 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQL---LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLD- 74 (192)
T ss_pred cEEEEeeeEEEecCCCCceEe---EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehH-
Confidence 3689999999997421 0245 66699999999999999999999999999999986210 78999999997652
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
...+..+++++|++.+++. ++.+|+.++..
T Consensus 75 ------------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~------------------------------- 105 (192)
T cd03232 75 ------------------KNFQRSTGYVEQQDVHSPNLTVREALRFSAL------------------------------- 105 (192)
T ss_pred ------------------HHhhhceEEecccCccccCCcHHHHHHHHHH-------------------------------
Confidence 1123456778888766664 77777653110
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-- 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~-- 294 (361)
.+ +|||||+||++||||| |||+++||. ++|||++||+
T Consensus 106 ------------~~----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 106 ------------LR----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred ------------Hh----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 01 7999999999999999 999999753 7899999993
Q ss_pred -ccccccchhhHhhhh-hhhcCCC
Q 018083 295 -DLLSLTDRARIRTYL-GELLGIP 316 (361)
Q Consensus 295 -~~~~~aDri~vvl~~-G~iv~~g 316 (361)
.+..+||+++ +|++ |++++.|
T Consensus 170 ~~~~~~~d~i~-~l~~~g~i~~~g 192 (192)
T cd03232 170 ASIFEKFDRLL-LLKRGGKTVYFG 192 (192)
T ss_pred HHHHhhCCEEE-EEcCCCeEEeCC
Confidence 2578899996 5998 9998754
No 318
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.1e-31 Score=236.13 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=112.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|++.. ..+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~-~~~---l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~---- 67 (171)
T cd03228 1 IEFKNVSFSYPGRP-KPV---LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLR---- 67 (171)
T ss_pred CEEEEEEEEcCCCC-ccc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhh----
Confidence 57899999997642 135 666999999999999999999999999999999999 99999999997654
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.......+..+++++|++.++..++.+|+
T Consensus 68 -----------~~~~~~~~~~i~~~~~~~~~~~~t~~e~l---------------------------------------- 96 (171)
T cd03228 68 -----------DLDLESLRKNIAYVPQDPFLFSGTIRENI---------------------------------------- 96 (171)
T ss_pred -----------hcCHHHHHhhEEEEcCCchhccchHHHHh----------------------------------------
Confidence 11111223456677777644332322211
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--Cccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~ 299 (361)
||+|||||++||||| ||||++||. ++|||++|| +++..
T Consensus 97 ---------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 160 (171)
T cd03228 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD- 160 (171)
T ss_pred ---------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence 999999999999999 999999753 789999999 45555
Q ss_pred cchhhHhhhhhh
Q 018083 300 TDRARIRTYLGE 311 (361)
Q Consensus 300 aDri~vvl~~G~ 311 (361)
||+++ +|++|+
T Consensus 161 ~d~~~-~l~~g~ 171 (171)
T cd03228 161 ADRII-VLDDGR 171 (171)
T ss_pred CCEEE-EEcCCC
Confidence 99996 588874
No 319
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=3.1e-31 Score=254.75 Aligned_cols=202 Identities=17% Similarity=0.096 Sum_probs=142.0
Q ss_pred HHHHHHHhHHHHHhh-----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 67 VFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 67 ~~~~~l~~~~~~~~~-----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++++..++.... ..+.|+++|+++. .. .+ |+++||+|++|++++|+||||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~~---~v---L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--GA---PV---LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhcccccccccccCCCCCeEEEEEEEEe--cc---cc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 688888876653322 3457999999985 21 35 66699999999999999999999999999999999
Q ss_pred cccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhh
Q 018083 142 ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR 221 (361)
Q Consensus 142 ~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~ 221 (361)
+ |++|+|.++|. ++|++|++.+++.++.+|+.++... . .
T Consensus 88 ~-----p~~G~I~i~g~----------------------------i~yv~q~~~l~~~tv~enl~~~~~~----~-~--- 126 (282)
T cd03291 88 E-----PSEGKIKHSGR----------------------------ISFSSQFSWIMPGTIKENIIFGVSY----D-E--- 126 (282)
T ss_pred C-----CCCcEEEECCE----------------------------EEEEeCcccccccCHHHHhhccccc----C-H---
Confidence 9 99999998761 3444555555555777887754321 0 1
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------- 284 (361)
.++.++++.+++.+.+........ ...++.+.+||||||||++||||| |||+++||.
T Consensus 127 ~~~~~~l~~~~l~~~l~~~~~~~~------~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~ 200 (282)
T cd03291 127 YRYKSVVKACQLEEDITKFPEKDN------TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200 (282)
T ss_pred HHHHHHHHHhCCHHHHHhcccccc------ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 112222333333321100000000 012445689999999999999999 999999653
Q ss_pred --------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.|||++|| ......||+++ +|++|+++..|+++++...
T Consensus 201 ~ll~~~~~~~tIiiisH~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 201 SCVCKLMANKTRILVTSKMEHLKKADKIL-ILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHhhCCCEEEEEeCChHHHHhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 789999999 22335799996 5999999999998887643
No 320
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=2.3e-31 Score=281.94 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=150.8
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc--cceeeecccccCcce
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTY 164 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~--~G~I~i~G~~i~~~~ 164 (361)
.+++++++|+++ ++ |+++|++|++||++||+||||||||||+++|+|+.+ |+ +|+|.++|+++..
T Consensus 70 ~~~~l~~~~~~~---~i---L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~~~~-- 136 (659)
T PLN03211 70 KISDETRQIQER---TI---LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRKPTK-- 136 (659)
T ss_pred ccccccccCCCC---ee---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEECch--
Confidence 467788899753 45 666999999999999999999999999999999998 64 8999999977530
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcceeEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
..+..++||+|+..+++. ++.+++.+...... ....++.++++.++++.+||.+...
T Consensus 137 -----------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 196 (659)
T PLN03211 137 -----------------QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN--- 196 (659)
T ss_pred -----------------hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC---
Confidence 122357899999888766 99999987643211 1122344566788999999975110
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
. .+.++.+.+||||||||++||||| ||||++||. |+|||++|| .
T Consensus 197 ----t-----~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 197 ----T-----IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred ----c-----eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 0 012456788999999999999999 999999753 899999999 3
Q ss_pred -ccccccchhhHhhhhhhhcCCCCccccc
Q 018083 295 -DLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 295 -~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
.+.++||+++ +|++|+++..|+++++.
T Consensus 268 ~~i~~~~D~ii-lL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 268 SRVYQMFDSVL-VLSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHHHHhhceEE-EecCCcEEEECCHHHHH
Confidence 3678999996 59999999999998774
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=2.8e-31 Score=276.44 Aligned_cols=185 Identities=13% Similarity=0.091 Sum_probs=136.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+++++|++++|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 3 ~~i~~~nls~~~~~~~--~i---l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~----- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK--EI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG----- 67 (552)
T ss_pred EEEEEeeEEEecCCCC--ee---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC-----
Confidence 4799999999997322 45 666999999999999999999999999999999999 99999998641
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe-------------cCCChh----------
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-------------RSDSSS---------- 219 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~-------------~~~~~~---------- 219 (361)
..++|++|++.+++. ++.+|+.++..... .....+
T Consensus 68 ---------------------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (552)
T TIGR03719 68 ---------------------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAE 126 (552)
T ss_pred ---------------------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 113445555544433 55566554321000 000010
Q ss_pred ------------hhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCC
Q 018083 220 ------------LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 278 (361)
Q Consensus 220 ------------~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEP 278 (361)
...++.++++.+++.. +++++.+||||||||++||||| |||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEP 188 (552)
T TIGR03719 127 LQEIIDAADAWDLDRKLEIAMDALRCPP------------------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188 (552)
T ss_pred HHHHHHhcCcchhHHHHHHHHhhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1234455666677743 2778999999999999999999 999
Q ss_pred ceeecC-------------CccEEEEEc--CccccccchhhHhhhhhhhc-CCCCcccccc
Q 018083 279 YLSFRD-------------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 323 (361)
Q Consensus 279 t~~L~~-------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i~~ 323 (361)
|++||. +.|||+||| +.+..+||+++ +|++|+++ ..|+.+++..
T Consensus 189 t~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~-~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 189 TNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWIL-ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 999864 579999999 56778999996 59999975 6788776554
No 322
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.1e-30 Score=236.98 Aligned_cols=165 Identities=11% Similarity=0.124 Sum_probs=126.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. . +.++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~----~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 66 (195)
T PRK13541 1 MLSLHQLQFNIEQK----N---LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINN-- 66 (195)
T ss_pred CeEEEEeeEEECCc----E---EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccCh--
Confidence 47899999999652 2 334999999999999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHH-HHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.. ...+++++|++.++. .++.+|+.+..... ...+++.++++.+++.+
T Consensus 67 -------------~~----~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~-------- 115 (195)
T PRK13541 67 -------------IA----KPYCTYIGHNLGLKLEMTVFENLKFWSEIY------NSAETLYAAIHYFKLHD-------- 115 (195)
T ss_pred -------------hh----hhhEEeccCCcCCCccCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHh--------
Confidence 00 112455666554333 37788887543211 12345667788888876
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-Cccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~ 297 (361)
.+++.+.+||||||||++||||| |||+++||. +.|+|++|| ....
T Consensus 116 ---------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 116 ---------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred ---------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 34888999999999999999999 999999753 799999999 4444
Q ss_pred cccchh
Q 018083 298 SLTDRA 303 (361)
Q Consensus 298 ~~aDri 303 (361)
..||-+
T Consensus 187 ~~~~~~ 192 (195)
T PRK13541 187 KSAQIL 192 (195)
T ss_pred chhhee
Confidence 557765
No 323
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-31 Score=253.00 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=124.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|... +..+ ..
T Consensus 40 l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~~---~~~~--------------~~--- 94 (264)
T PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-----PTVGKVDRNGEVS---VIAI--------------SA--- 94 (264)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEe---EEec--------------cc---
Confidence 566999999999999999999999999999999999 9999999998421 0000 00
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
++.++ .++.+|+.++.... ..+.....+.+..+++.+++.+ .+++.+.+|||||+
T Consensus 95 -~~~~~------~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 95 -GLSGQ------LTGIENIEFKMLCM-GFKRKEIKAMTPKIIEFSELGE-----------------FIYQPVKKYSSGMR 149 (264)
T ss_pred -CCCCC------CcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----------------hhcCCcccCCHHHH
Confidence 00000 12334443321110 1122334445566777888876 44888999999999
Q ss_pred hhhhhhhcc---------CCCceeecC----------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCcc
Q 018083 267 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 267 QRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
||++||||| |||+++||. +.|||++|| ..+..+||+++ +|++|+++..|+++
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~-~l~~G~i~~~g~~~ 228 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIA-WIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEE-EEECCEEEEeCCHH
Confidence 999999999 999999753 789999999 46678899996 59999999999888
Q ss_pred ccccC
Q 018083 320 QIFDI 324 (361)
Q Consensus 320 ~i~~~ 324 (361)
+++..
T Consensus 229 ~~~~~ 233 (264)
T PRK13546 229 DVLPK 233 (264)
T ss_pred HHHHH
Confidence 77653
No 324
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.96 E-value=2e-30 Score=275.10 Aligned_cols=180 Identities=13% Similarity=0.052 Sum_probs=135.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|+++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~~--~i---l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~------ 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGD--VL---IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA------ 513 (659)
T ss_pred CeEEEEeeEEECCCCC--ee---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC------
Confidence 4689999999996442 45 666999999999999999999999999999999999 9999987642
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+..+++++|++.+++.++.+|+.++.............+++.++++.+++.+.+.+ ...
T Consensus 514 --------------------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 572 (659)
T TIGR00954 514 --------------------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGG 572 (659)
T ss_pred --------------------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCC
Confidence 23477889998887779999998764321110112234567788888998763210 111
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc-Ccccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-~~~~~~a 300 (361)
+.++ ...+.+||||||||++||||| ||||++||. ++|+|+||| ....+.|
T Consensus 573 ~~~~-------~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 573 WSAV-------QDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred cccc-------cccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 1110 112478999999999999999 999999863 889999999 4556889
Q ss_pred chhhHhhh
Q 018083 301 DRARIRTY 308 (361)
Q Consensus 301 Dri~vvl~ 308 (361)
|+++ +|+
T Consensus 646 d~il-~l~ 652 (659)
T TIGR00954 646 EYLL-YMD 652 (659)
T ss_pred CEEE-EEe
Confidence 9995 475
No 325
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=1.9e-30 Score=230.42 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=112.3
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|++++|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~--~~---l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~------- 63 (166)
T cd03223 1 IELENLSLATPDGR--VL---LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG------- 63 (166)
T ss_pred CEEEEEEEEcCCCC--ee---eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-------
Confidence 46899999996432 35 666999999999999999999999999999999999 99999998762
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
..++|++|++.++..++.+|+.++
T Consensus 64 -------------------~~i~~~~q~~~~~~~tv~~nl~~~------------------------------------- 87 (166)
T cd03223 64 -------------------EDLLFLPQRPYLPLGTLREQLIYP------------------------------------- 87 (166)
T ss_pred -------------------ceEEEECCCCccccccHHHHhhcc-------------------------------------
Confidence 234556666554444666666531
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc-Cccccccch
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 302 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-~~~~~~aDr 302 (361)
.+.+||||||||++||||| |||+++||. +.|+|++|| .....+||+
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCE
Confidence 1357999999999999999 999999863 789999999 344578999
Q ss_pred hhHhhhhh
Q 018083 303 ARIRTYLG 310 (361)
Q Consensus 303 i~vvl~~G 310 (361)
++ +|+++
T Consensus 157 i~-~l~~~ 163 (166)
T cd03223 157 VL-DLDGE 163 (166)
T ss_pred EE-EEcCC
Confidence 96 47654
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2e-30 Score=229.56 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=106.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|+++|+++.|++. ++ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~---~v---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~--- 66 (163)
T cd03216 1 LELRGITKRFGGV---KA---LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSF--- 66 (163)
T ss_pred CEEEEEEEEECCe---EE---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCc---
Confidence 5789999999753 45 666999999999999999999999999999999999 999999999876530
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.... ...+. .+++
T Consensus 67 ------------~~~~------------------------------------~~~~~-------~i~~------------ 79 (163)
T cd03216 67 ------------ASPR------------------------------------DARRA-------GIAM------------ 79 (163)
T ss_pred ------------CCHH------------------------------------HHHhc-------CeEE------------
Confidence 0000 00000 0111
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Ccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~ 298 (361)
..+|||||+||++||||| |||+++||. +.|+|++|| .++..
T Consensus 80 ------------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 80 ------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred ------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 012999999999999999 999999753 789999999 45778
Q ss_pred ccchhhHhhhhhhhcC
Q 018083 299 LTDRARIRTYLGELLG 314 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~ 314 (361)
+||+++ +|++|++++
T Consensus 148 ~~d~~~-~l~~g~i~~ 162 (163)
T cd03216 148 IADRVT-VLRDGRVVG 162 (163)
T ss_pred hCCEEE-EEECCEEEe
Confidence 899996 599998864
No 327
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2e-30 Score=245.79 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=131.9
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
.+|+++|+++. .+ |+++|+ |++|++++|+||||||||||+++|+|+++ |++|+|+ ++|
T Consensus 4 ~~~~~~y~~~~--~~---l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNS--FK---LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcc--hh---hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 47899997542 46 555995 99999999999999999999999999999 9999996 556
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.++... . ...... ...+++++|++..++.++.+++.+... ....++.+.++++.+++.+
T Consensus 73 ~~~~~~-~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~~-- 131 (255)
T cd03236 73 SELQNY-F-----------TKLLEG-DVKVIVKPQYVDLIPKAVKGKVGELLK------KKDERGKLDELVDQLELRH-- 131 (255)
T ss_pred chhhhh-h-----------HHhhhc-ccceeeecchhccCchHHHHHHHHHhc------hhHHHHHHHHHHHHcCCch--
Confidence 554310 0 000000 011344555544444333444443211 1233466778899999987
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiT 292 (361)
..++.+.+||+|||||++||||| ||||++||. ++|||++|
T Consensus 132 ---------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 132 ---------------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34888999999999999999999 999999753 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
| ..+..+||+++ +| +|++.+.| ++..|.+
T Consensus 197 Hd~~~~~~~ad~i~-~l-~~~~~~~~----~~~~~~~ 227 (255)
T cd03236 197 HDLAVLDYLSDYIH-CL-YGEPGAYG----VVTLPKS 227 (255)
T ss_pred CCHHHHHHhCCEEE-EE-CCCCCcce----eeecCcc
Confidence 9 46677899995 47 57776654 5555554
No 328
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.6e-30 Score=237.80 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=151.3
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++|+++.|+++ ++ |+++|++|++||.++|+||||||||||+++++|-+. |++|.+.+.|+..-
T Consensus 28 ~~~li~l~~v~v~r~gk---~i---L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G 96 (257)
T COG1119 28 NEPLIELKNVSVRRNGK---KI---LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFG 96 (257)
T ss_pred CcceEEecceEEEECCE---ee---ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeecc
Confidence 44679999999999874 45 666999999999999999999999999999999999 99999999997753
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHH-HHHhccccceeEEec----CCChhhhhhhcccccccCCC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELVIRR----SDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~-ti~~ni~~~~~~~~~----~~~~~~~~~v~~~l~~~gl~ 234 (361)
. .... ++.|+.||+|.-... +.+. ++.+-|..|.-..-. ...+...+++..+++.+|+.
T Consensus 97 ~-------------~~~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~ 162 (257)
T COG1119 97 K-------------GETI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162 (257)
T ss_pred C-------------Ccch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh
Confidence 1 0122 778888998743322 1222 555555544432111 12345567788899999998
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC------------------Ccc
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKP 287 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~------------------g~t 287 (361)
+ +++++..+||-|||||+.||||| |||+.|||. +.+
T Consensus 163 ~-----------------la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ 225 (257)
T COG1119 163 H-----------------LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPA 225 (257)
T ss_pred h-----------------hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCce
Confidence 8 56999999999999999999999 999999752 788
Q ss_pred EEEEEc--CccccccchhhHhhhhhhhcCCCC
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
+|+||| +++....++++ .+++|+++..|.
T Consensus 226 ll~VtHh~eEi~~~~th~l-ll~~g~v~~~g~ 256 (257)
T COG1119 226 LLFVTHHAEEIPPCFTHRL-LLKEGEVVAQGK 256 (257)
T ss_pred EEEEEcchhhcccccceEE-EeeCCceeeccc
Confidence 999999 67877778885 499999998763
No 329
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.6e-30 Score=287.38 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=177.5
Q ss_pred hhHHHHHHHHhHHH----HHh---h----hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 64 RDAVFREVLQSYDQ----LRT---R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 64 ~~~~~~~~l~~~~~----~~~---~----~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
.++|+.|-.+.++| .+. + ..+.|+++|++.+|.++.+ .+ |++|||+|++||.+||||..||||||
T Consensus 1106 SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp-~V---Lk~is~~I~p~eKVGIVGRTGaGKSS 1181 (1381)
T KOG0054|consen 1106 SVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLP-LV---LKGISFTIKPGEKVGIVGRTGAGKSS 1181 (1381)
T ss_pred hhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCc-ch---hcCceEEEcCCceEEEeCCCCCCHHH
Confidence 44587777764433 101 0 3347999999999988754 56 55599999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|-++.. |.+|+|.+||.|+. .+.+.|+|+.++++||+|.+|+.|++.|+--
T Consensus 1182 L~~aLFRl~e-----~~~G~I~IDgvdI~---------------~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP----- 1236 (1381)
T KOG0054|consen 1182 LILALFRLVE-----PAEGEILIDGVDIS---------------KIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP----- 1236 (1381)
T ss_pred HHHHHHHhcC-----ccCCeEEEcCeecc---------------cccHHHHHhcCeeeCCCCceecCccccccCc-----
Confidence 9999999999 99999999999997 6889999999999999999999999888761
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
. .+-..+++-++|+.+++.+.+...+..+...| ..-...+|-||||.+|+|||| ||+|++.|
T Consensus 1237 --f-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v------~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1237 --F-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEV------SEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred --c-cccCHHHHHHHHHHhChHHHHhhCCcCCCcee------cCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence 1 12334566677888877654322222211111 233456999999999999998 99999976
Q ss_pred C---------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCC
Q 018083 284 D---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESS 328 (361)
Q Consensus 284 ~---------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~ 328 (361)
. ++|||.|.| ..+.. ||||+ ||++|++++.++|++++.++...
T Consensus 1308 ~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVl-Vld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1308 PETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVL-VLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEE-EeeCCeEeecCChHHHHhCCcch
Confidence 4 999999999 45554 89995 69999999999999999887643
No 330
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-30 Score=237.35 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=148.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+.+|+++||+.+-.+. .++ |++|||+|++||+++|+||||||||||.++|+|.-. |.+++|+|.++|+++.
T Consensus 1 m~~L~I~dLhv~v~~~--keI---LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~- 71 (251)
T COG0396 1 MMMLEIKDLHVEVEGK--KEI---LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDIL- 71 (251)
T ss_pred CceeEEeeeEEEecCc--hhh---hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCcccc-
Confidence 3579999999998764 255 555999999999999999999999999999999875 4499999999999987
Q ss_pred ceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEEecCC--ChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVIRRSD--SSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~--~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
...+.+. +.-+.+.||.|.-++. ++.+-+..+....+... ..+..++++++++.++++++
T Consensus 72 --------------~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~-- 135 (251)
T COG0396 72 --------------ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE-- 135 (251)
T ss_pred --------------cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH--
Confidence 2222222 1223335777655444 33333332221111111 23556788889999999874
Q ss_pred EEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiT 292 (361)
++++..+ .+|||+|+|..|++++ |||.|||| .+.++|+||
T Consensus 136 --------------~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liIT 201 (251)
T COG0396 136 --------------FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIIT 201 (251)
T ss_pred --------------HhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4677777 5999999999999987 99999965 289999999
Q ss_pred c-Cccccc--cchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H-GDLLSL--TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H-~~~~~~--aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| ..++.+ .|++. +|.+|+|+..|.+ ++..
T Consensus 202 Hy~rll~~i~pD~vh-vl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 202 HYQRLLDYIKPDKVH-VLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred cHHHHHhhcCCCEEE-EEECCEEEecCCH-HHHH
Confidence 9 444444 49996 5999999999998 5544
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=3.5e-30 Score=294.03 Aligned_cols=212 Identities=11% Similarity=0.091 Sum_probs=153.0
Q ss_pred hhhhhhHHHHHHHHhHHHHHh-----h---hc-cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCc
Q 018083 60 DQRRRDAVFREVLQSYDQLRT-----R---IG-SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 130 (361)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~-----~---~~-~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGK 130 (361)
..+....|+.++++.+++.+. . .. ..++++|+++.|++.. .++ |+|+||+|++|++++|+|||||||
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---l~~isl~i~~G~~v~IvG~~GsGK 677 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDL-PPT---LNGITFSIPEGALVAVVGQVGCGK 677 (1522)
T ss_pred HHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCC-Cce---eeeeEEEEcCCCEEEEECCCCCCH
Confidence 334445599999975432111 0 11 2699999999997532 135 666999999999999999999999
Q ss_pred chhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhcccccee
Q 018083 131 SSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL 210 (361)
Q Consensus 131 STLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~ 210 (361)
|||+++|+|+++ |++|+|.++| .++|++|++.++..++.+||.++..
T Consensus 678 STLl~~l~g~~~-----~~~G~i~~~g----------------------------~i~yv~Q~~~l~~~Ti~eNI~~g~~ 724 (1522)
T TIGR00957 678 SSLLSALLAEMD-----KVEGHVHMKG----------------------------SVAYVPQQAWIQNDSLRENILFGKA 724 (1522)
T ss_pred HHHHHHHhCCCc-----cCCcEEEECC----------------------------EEEEEcCCccccCCcHHHHhhcCCc
Confidence 999999999999 9999999875 1677899988887799999998753
Q ss_pred EEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCcee
Q 018083 211 VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS 281 (361)
Q Consensus 211 ~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~ 281 (361)
. +.+.. .++++.+++.+++...++...+ ...+.+.+||||||||++||||+ |||+++
T Consensus 725 ~----~~~~~----~~~~~~~~l~~~l~~~~~g~~t------~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 725 L----NEKYY----QQVLEACALLPDLEILPSGDRT------EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred c----CHHHH----HHHHHHhCCHHHHHhcCCCCCc------eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1 11111 2222222222111000001111 23567889999999999999999 999999
Q ss_pred ecC------------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 282 FRD------------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 282 L~~------------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
||. ++|+|++|| ......||+|+ +|++|++++.|+++++..
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii-~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII-VMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE-EecCCeEEeeCCHHHHHh
Confidence 653 589999999 34445699995 699999999999888764
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=3.4e-30 Score=268.54 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=138.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ +.
T Consensus 323 ~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~--- 387 (556)
T PRK11819 323 KVIEAENLSKSFGDR---LL---IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-TV--- 387 (556)
T ss_pred eEEEEEeEEEEECCe---ee---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-ce---
Confidence 479999999999753 45 666999999999999999999999999999999999 9999999843 21
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch-HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.++|++|++ .+++. ++.+|+.++..... .... ...+..+++.+++.+.
T Consensus 388 ----------------------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~----- 437 (556)
T PRK11819 388 ----------------------KLAYVDQSRDALDPNKTVWEEISGGLDIIK-VGNR--EIPSRAYVGRFNFKGG----- 437 (556)
T ss_pred ----------------------EEEEEeCchhhcCCCCCHHHHHHhhccccc-cccc--HHHHHHHHHhCCCChh-----
Confidence 255666664 33333 77788776542111 1111 1234467888998642
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ..|||+||| +.+.
T Consensus 438 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~ 506 (556)
T PRK11819 438 -----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLD 506 (556)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 24889999999999999999999 999999863 348999999 5677
Q ss_pred cccchhhHhhhh-hhhc-CCCCcccccc
Q 018083 298 SLTDRARIRTYL-GELL-GIPPAKQIFD 323 (361)
Q Consensus 298 ~~aDri~vvl~~-G~iv-~~g~~~~i~~ 323 (361)
.+||+++ +|++ |++. ..|+..++++
T Consensus 507 ~~~d~i~-~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 507 RIATHIL-AFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HhCCEEE-EEECCCeEEEecCCHHHHHH
Confidence 8999996 5885 7765 4566555443
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=5.3e-30 Score=266.84 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=134.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~~---~~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK---LL---IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECCe---ee---eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 3579999999999753 45 666999999999999999999999999999999999 9999999843 21
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.++|++|++. +++. ++.+|+.++..... .... ..++.++++.+++...
T Consensus 386 -----------------------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~---- 435 (552)
T TIGR03719 386 -----------------------KLAYVDQSRDALDPNKTVWEEISGGLDIIQ-LGKR--EVPSRAYVGRFNFKGS---- 435 (552)
T ss_pred -----------------------EEEEEeCCccccCCCCcHHHHHHhhccccc-cCcc--hHHHHHHHHhCCCChh----
Confidence 2455666542 3333 67777776542111 1111 2234567888998642
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~ 296 (361)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 436 ------------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~ 503 (552)
T TIGR03719 436 ------------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFL 503 (552)
T ss_pred ------------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 24789999999999999999999 999999863 458999999 567
Q ss_pred ccccchhhHhhhh-hhhc-CCCCc
Q 018083 297 LSLTDRARIRTYL-GELL-GIPPA 318 (361)
Q Consensus 297 ~~~aDri~vvl~~-G~iv-~~g~~ 318 (361)
..+||+++ +|++ |+++ ..|+.
T Consensus 504 ~~~~d~i~-~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 504 DRIATHIL-AFEGDSHVEWFEGNY 526 (552)
T ss_pred HHhCCEEE-EEECCCeEEEeCCCH
Confidence 78999996 5886 5665 34444
No 334
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=6.6e-30 Score=229.54 Aligned_cols=200 Identities=15% Similarity=0.176 Sum_probs=160.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc-cccCc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G-~~i~~ 162 (361)
.+|++++++++|++ ..| |+++||+|.+||.-+|||||||||||++-.|+|-.+ |+.|+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~G---F~A---ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~~ 72 (249)
T COG4674 4 IILYLDGVSVSFGG---FKA---LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLTK 72 (249)
T ss_pred ceEEEeceEEEEcc---eee---eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhcc
Confidence 47899999999987 477 555999999999999999999999999999999999 9999999999 77752
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec-------CCChhhhhhhcccccccCCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR-------SDSSSLRNRMRCKAHKIGCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~-------~~~~~~~~~v~~~l~~~gl~ 234 (361)
. .++.|. |.-++--||.|..|.. ++++|+.......+. ....+-+.+++++|...||.
T Consensus 73 ~---~e~~IA-----------r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~ 138 (249)
T COG4674 73 L---PEHRIA-----------RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138 (249)
T ss_pred C---CHHHHH-----------HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc
Confidence 1 122222 2234445777776666 777777655432111 11244567899999999999
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceee---------------cCCccEEE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF---------------RDDKPVVV 290 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L---------------~~g~tvIi 290 (361)
++. +.....||.||||++.|+..+ |||++|+ ..+.+|++
T Consensus 139 ~~~-----------------~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilV 201 (249)
T COG4674 139 DER-----------------DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILV 201 (249)
T ss_pred hhh-----------------hhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEE
Confidence 843 888999999999999999988 9999994 34889999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|.| ..+.++|++|.| |+.|.++..|+.+++-.+|.
T Consensus 202 VEHDM~Fvr~~A~~VTV-lh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 202 VEHDMGFVREIADKVTV-LHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred EeccHHHHHHhhheeEE-EeccceeecccHHHhhcCcc
Confidence 999 688999999985 99999999999999877764
No 335
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.1e-29 Score=266.08 Aligned_cols=170 Identities=13% Similarity=0.060 Sum_probs=131.0
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++|+++.|++. . |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ +.
T Consensus 338 ~~~l~~~~ls~~~~~~--~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~~- 401 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF--S-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---LK- 401 (590)
T ss_pred ceEEEEcceEEEECCE--E-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---ee-
Confidence 4579999999999652 2 666999999999999999999999999999999999 999999875 11
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
++|++|++.++.. ++.+++.++.. ... ....+.++++.+++.+
T Consensus 402 ------------------------i~y~~Q~~~~~~~~tv~e~l~~~~~---~~~---~~~~~~~~L~~l~l~~------ 445 (590)
T PRK13409 402 ------------------------ISYKPQYIKPDYDGTVEDLLRSITD---DLG---SSYYKSEIIKPLQLER------ 445 (590)
T ss_pred ------------------------EEEecccccCCCCCcHHHHHHHHhh---hcC---hHHHHHHHHHHCCCHH------
Confidence 2333444332222 56666654321 111 1224567889999986
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. +.|||+|||
T Consensus 446 -----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 446 -----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred -----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45999999999999999999999 999999752 789999999
Q ss_pred CccccccchhhHhhhhhhhcCCCC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~ 317 (361)
.++..+|||++ +|+ |++...|.
T Consensus 515 ~~~~~~aDrvi-vl~-~~~~~~g~ 536 (590)
T PRK13409 515 YMIDYISDRLM-VFE-GEPGKHGH 536 (590)
T ss_pred HHHHHhCCEEE-EEc-Ccceeeee
Confidence 46778999995 475 57766665
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-29 Score=267.63 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=134.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 310 ~~~l~~~~l~~~y~~~---~i---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~~- 376 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR---II---LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-IK- 376 (638)
T ss_pred CceEEEEeeEEEeCCe---ee---eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-EE-
Confidence 3479999999999753 45 666999999999999999999999999999999999 99999998631 11
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch--HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI--NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~--~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
++|++|+. .+.+. ++.+++.. .......+++..+++.+++...
T Consensus 377 ------------------------igy~~Q~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~~l~~~--- 422 (638)
T PRK10636 377 ------------------------LGYFAQHQLEFLRADESPLQHLAR-------LAPQELEQKLRDYLGGFGFQGD--- 422 (638)
T ss_pred ------------------------EEEecCcchhhCCccchHHHHHHH-------hCchhhHHHHHHHHHHcCCChh---
Confidence 12222221 01111 22232210 0112234567788999999642
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GD 295 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~ 295 (361)
..++++.+||||||||++|||+| ||||++||. +.|||+||| ..
T Consensus 423 -------------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~ 489 (638)
T PRK10636 423 -------------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHL 489 (638)
T ss_pred -------------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 24789999999999999999999 999999863 459999999 56
Q ss_pred cccccchhhHhhhhhhhc-CCCCcccc
Q 018083 296 LLSLTDRARIRTYLGELL-GIPPAKQI 321 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv-~~g~~~~i 321 (361)
+..+||+++ +|++|+++ ..|+.+++
T Consensus 490 ~~~~~d~i~-~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 490 LRSTTDDLY-LVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHhCCEEE-EEECCEEEEcCCCHHHH
Confidence 778999996 59999997 77877765
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=1.5e-29 Score=267.57 Aligned_cols=175 Identities=11% Similarity=0.109 Sum_probs=133.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||++.|++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+ |.++.
T Consensus 318 ~~l~~~~l~~~~~~~---~i---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~~-- 383 (635)
T PRK11147 318 IVFEMENVNYQIDGK---QL---VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKLE-- 383 (635)
T ss_pred ceEEEeeeEEEECCe---EE---EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCcE--
Confidence 479999999999753 45 666999999999999999999999999999999999 99999988 54332
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccch-HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
++|++|+. .+++. ++.+|+.++.... .. .....++.++++.+++...
T Consensus 384 -----------------------i~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~----- 432 (635)
T PRK11147 384 -----------------------VAYFDQHRAELDPEKTVMDNLAEGKQEV-MV--NGRPRHVLGYLQDFLFHPK----- 432 (635)
T ss_pred -----------------------EEEEeCcccccCCCCCHHHHHHhhcccc-cc--cchHHHHHHHHHhcCCCHH-----
Confidence 33444443 12232 5666665532210 00 1123456778888888642
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
..++++.+||||||||++||||| ||||++||. +.|||+||| .++.
T Consensus 433 -----------~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 433 -----------RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVD 501 (635)
T ss_pred -----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 24889999999999999999999 999999863 569999999 4677
Q ss_pred cccchhhHhhh-hhhhcCC
Q 018083 298 SLTDRARIRTY-LGELLGI 315 (361)
Q Consensus 298 ~~aDri~vvl~-~G~iv~~ 315 (361)
.+||+++ +++ +|++...
T Consensus 502 ~~~d~i~-~l~~~g~i~~~ 519 (635)
T PRK11147 502 NTVTECW-IFEGNGKIGRY 519 (635)
T ss_pred HhcCEEE-EEeCCCeEEEc
Confidence 8999996 587 7988653
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.2e-29 Score=230.84 Aligned_cols=190 Identities=17% Similarity=0.151 Sum_probs=148.0
Q ss_pred ccccccceeeecCcce--eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~--~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|++++|+.+.|.++.. .+++++ +|++|++|+++.|+|.||||||||+|+|+|-+. |++|+|+++|.+++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~---~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVt- 71 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNG---LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVT- 71 (263)
T ss_pred CcccccceeeecCCChhHHHHHhc---CceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceecc-
Confidence 4678888888765432 467555 999999999999999999999999999999999 99999999999997
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHH--HHH-HHHhccccceeEE--ecCC---ChhhhhhhcccccccC--
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM--IKL-WIMEGVRHGELVI--RRSD---SSSLRNRMRCKAHKIG-- 232 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l--~~~-ti~~ni~~~~~~~--~~~~---~~~~~~~v~~~l~~~g-- 232 (361)
.+..+.....++-|||+|.. ++. +|.+|+....... +... ....++..++.+..++
T Consensus 72 --------------k~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lg 137 (263)
T COG1101 72 --------------KKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137 (263)
T ss_pred --------------cCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccc
Confidence 23444444556778999975 444 9999998765421 1111 1222333333445444
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------Cc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 286 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~ 286 (361)
+++ .++.+..-|||||||-++++.|. ||-|++||+ +.
T Consensus 138 Len-----------------rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl 200 (263)
T COG1101 138 LEN-----------------RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 (263)
T ss_pred hhh-----------------hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC
Confidence 455 46888999999999999999996 999999886 88
Q ss_pred cEEEEEc--CccccccchhhHhhhhhhhcCC
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G~iv~~ 315 (361)
|.+|||| .+|..|.+|.+ +|+.|+|+.+
T Consensus 201 TtlMVTHnm~~Al~yG~RlI-mLh~G~IvlD 230 (263)
T COG1101 201 TTLMVTHNMEDALDYGNRLI-MLHSGKIVLD 230 (263)
T ss_pred ceEEEeccHHHHHhhCCeEE-EEeCCeEEEE
Confidence 9999999 78999999995 6999999875
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.8e-29 Score=263.74 Aligned_cols=199 Identities=12% Similarity=0.066 Sum_probs=140.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++||+++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|... .++
T Consensus 1 ~i~i~nls~~~g~~---~~---l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~~-i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRGVR---VL---LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNWQ-LAW 68 (638)
T ss_pred CEEEEEEEEEeCCc---ee---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE-EEE
Confidence 58899999999763 45 666999999999999999999999999999999999 9999999988531 223
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHh------cc--ccceeEE--ecCCChhhhhhhcccccccCC
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIME------GV--RHGELVI--RRSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~------ni--~~~~~~~--~~~~~~~~~~~v~~~l~~~gl 233 (361)
..+... . ..+..+++++|....+.. +..- +. .++.... ........+.++.++++.+|+
T Consensus 69 ~~q~~~--------~--~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl 138 (638)
T PRK10636 69 VNQETP--------A--LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138 (638)
T ss_pred EecCCC--------C--CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Confidence 322110 0 013345666665433322 1100 00 0000000 001112345678889999999
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVV 291 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIii 291 (361)
.+. .+++++.+||||||||++||||| ||||++||. +.|||+|
T Consensus 139 ~~~----------------~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviiv 202 (638)
T PRK10636 139 SNE----------------QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILI 202 (638)
T ss_pred Cch----------------hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEE
Confidence 632 24889999999999999999999 999999863 6799999
Q ss_pred Ec--CccccccchhhHhhhhhhhc-CCCCccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELL-GIPPAKQIF 322 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i~ 322 (361)
|| ..+..+||+++ +|++|+++ ..|+.....
T Consensus 203 sHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 203 SHDRDFLDPIVDKII-HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred eCCHHHHHHhcCEEE-EEeCCEEEEecCCHHHHH
Confidence 99 46778999996 59999986 356655443
No 340
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=1.1e-29 Score=234.22 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=116.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-ecccccCcceEeEeeeecCCCcceeeeecCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~ 185 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|. ++|..+.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~------------------------ 53 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP------------------------ 53 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec------------------------
Confidence 566999999999999999999999999999999999 9999997 6654321
Q ss_pred CCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 186 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 186 ~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
+.+.+.+++. ++.+|+.+..... ..+..... ..+.+..++.. .+++++.+||+|
T Consensus 54 ----~~~~~~l~~~ltv~enl~~~~~~~-~~~~~~~~---~~~~~~~~l~~-----------------~~~~~~~~lS~G 108 (213)
T PRK15177 54 ----LGANSFILPGLTGEENARMMASLY-GLDGDEFS---HFCYQLTQLEQ-----------------CYTDRVSEYSVT 108 (213)
T ss_pred ----cccccccCCcCcHHHHHHHHHHHc-CCCHHHHH---HHHHHHhChhH-----------------HhhchHhhcCHH
Confidence 0011122232 4555555432211 11112212 12234456655 347889999999
Q ss_pred hhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCc
Q 018083 265 KQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 265 qrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
||||++||||| |||++++++ +.|+|++|| ..+..+||+++ +|++|+++..++.
T Consensus 109 ~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~-~l~~G~i~~~~~~ 187 (213)
T PRK15177 109 MKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFG-VLLHGKITMCEDL 187 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeE-EEECCeEEEeCCH
Confidence 99999999999 999988543 678999999 46678999996 5999999988877
Q ss_pred ccc
Q 018083 319 KQI 321 (361)
Q Consensus 319 ~~i 321 (361)
++.
T Consensus 188 ~~~ 190 (213)
T PRK15177 188 AQA 190 (213)
T ss_pred HHH
Confidence 655
No 341
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=7.5e-29 Score=214.81 Aligned_cols=166 Identities=15% Similarity=0.154 Sum_probs=140.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
++.++|++.+.++. .. |-++||+|.+||++.|+||||||||||+.-+.|.+.++- ..+|++++++++++
T Consensus 2 ~l~l~nvsl~l~g~---cL---La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~--- 70 (213)
T COG4136 2 MLCLKNVSLRLPGS---CL---LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLD--- 70 (213)
T ss_pred ceeeeeeeecCCCc---eE---EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeecc---
Confidence 57899999888764 44 666999999999999999999999999999999998442 46899999999886
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+...++.+++.||++.+|+. +|.+|+.|.+...- .....+..+..++++.|+..
T Consensus 71 --------------~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~--KG~aRr~~a~aAL~~~gL~g-------- 126 (213)
T COG4136 71 --------------MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL--KGNARRNAANAALERSGLDG-------- 126 (213)
T ss_pred --------------ccchhhhheeeeecccccccccccccceEEecCccc--ccHHHHhhHHHHHHHhccch--------
Confidence 233456778999999999999 99999999876422 23456677888999999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcC
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 294 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~ 294 (361)
..++.|.+||||||-|+++-|+| |||+|.||. |.++|+|||+
T Consensus 127 ---------~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 127 ---------AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred ---------hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 56999999999999999999998 999999752 9999999994
No 342
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.95 E-value=1.3e-29 Score=267.24 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=142.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+|+|++|++||+++|+||||||||||+++|+|..+.+. ..+|+|.++|.++. . ...++.
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~--~~~G~i~~~g~~~~---------------~---~~~~~~ 100 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV--KGSGSVLLNGMPID---------------A---KEMRAI 100 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECC---------------H---HHHhhh
Confidence 566999999999999999999999999999999987110 13799999997754 0 123456
Q ss_pred CcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccC----
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG---- 259 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~---- 259 (361)
++||+|+..+++. ++.+|+.++..... ...+++.++++.++++.+++.+. ++..+.
T Consensus 101 i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------------~~t~vg~~~~ 163 (617)
T TIGR00955 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC-----------------ANTRIGVPGR 163 (617)
T ss_pred ceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhc-----------------CcCccCCCCC
Confidence 8999999988877 99999998754321 11234455678899999999762 244443
Q ss_pred --Cchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC---ccccccchhhHhhhh
Q 018083 260 --DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG---DLLSLTDRARIRTYL 309 (361)
Q Consensus 260 --~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~---~~~~~aDri~vvl~~ 309 (361)
+||||||||++|||+| ||||++||. |+|||+++|. ++..+||+++ +|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~-ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII-LMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE-EeeC
Confidence 6999999999999999 999999753 8999999992 4678999996 5999
Q ss_pred hhhcCCCCcccc
Q 018083 310 GELLGIPPAKQI 321 (361)
Q Consensus 310 G~iv~~g~~~~i 321 (361)
|+++..|+++++
T Consensus 243 G~~v~~G~~~~~ 254 (617)
T TIGR00955 243 GRVAYLGSPDQA 254 (617)
T ss_pred CeEEEECCHHHH
Confidence 999999999877
No 343
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1.8e-29 Score=237.93 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=104.8
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 189 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~ 189 (361)
.+++|++|++++|+||||||||||+++|+|+++ |++|+|.++|..+ ++
T Consensus 18 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~i---------------------------~~ 65 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDTV---------------------------SY 65 (246)
T ss_pred ecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCceE---------------------------EE
Confidence 444556899999999999999999999999999 9999999988532 11
Q ss_pred cccchHH-HHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhh
Q 018083 190 ASDNINM-IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 268 (361)
Q Consensus 190 v~q~~~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 268 (361)
++|++.. +..++.+++.+...... .....+.++++.+++.. .+++++.+||||||||
T Consensus 66 ~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~l~l~~-----------------~~~~~~~~LSgGe~qr 123 (246)
T cd03237 66 KPQYIKADYEGTVRDLLSSITKDFY-----THPYFKTEIAKPLQIEQ-----------------ILDREVPELSGGELQR 123 (246)
T ss_pred ecccccCCCCCCHHHHHHHHhhhcc-----ccHHHHHHHHHHcCCHH-----------------HhhCChhhCCHHHHHH
Confidence 2222211 11234444432211000 01123456788888876 4588999999999999
Q ss_pred hhhhhcc---------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhhhh
Q 018083 269 QIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYL 309 (361)
Q Consensus 269 vaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl~~ 309 (361)
++||||| ||||++||. ++|||+||| ..+..+||+++ +|+.
T Consensus 124 v~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~-~l~~ 191 (246)
T cd03237 124 VAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLI-VFEG 191 (246)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-EEcC
Confidence 9999999 999999752 789999999 46678999995 4754
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=6.9e-29 Score=262.46 Aligned_cols=195 Identities=13% Similarity=0.190 Sum_probs=136.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.. ..+
T Consensus 2 ~~l~i~~ls~~~~~~---~i---l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~~-~~~ 69 (635)
T PRK11147 2 SLISIHGAWLSFSDA---PL---LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDL-IVA 69 (635)
T ss_pred cEEEEeeEEEEeCCc---ee---EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCCC-EEE
Confidence 479999999999763 45 666999999999999999999999999999999999 999999998732 111
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHH-----HHH-HH-------------HhccccceeE---EecCCChhhh
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-----IKL-WI-------------MEGVRHGELV---IRRSDSSSLR 221 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-----~~~-ti-------------~~ni~~~~~~---~~~~~~~~~~ 221 (361)
+..+. ..+...++++|.... +.. +. .+++...... .........+
T Consensus 70 ~l~q~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 136 (635)
T PRK11147 70 RLQQD-------------PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLE 136 (635)
T ss_pred EeccC-------------CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHH
Confidence 21111 011122334443210 000 00 0111100000 0000112345
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------- 284 (361)
.++.++++.+|+.. ++++.+||||||||++||||| ||||++||.
T Consensus 137 ~~~~~~l~~lgl~~-------------------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~ 197 (635)
T PRK11147 137 NRINEVLAQLGLDP-------------------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG 197 (635)
T ss_pred HHHHHHHHhCCCCC-------------------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH
Confidence 67788899999864 678999999999999999999 999999864
Q ss_pred -----CccEEEEEc--CccccccchhhHhhhhhhhcC-CCCcccccc
Q 018083 285 -----DKPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIFD 323 (361)
Q Consensus 285 -----g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~-~g~~~~i~~ 323 (361)
+.|||+||| ..+..+||+|+ +|++|+++. .|+..+++.
T Consensus 198 ~L~~~~~tvlivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 198 FLKTFQGSIIFISHDRSFIRNMATRIV-DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 569999999 46778999996 599999974 577665544
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=3.5e-29 Score=267.24 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=129.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|+++.|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.. ..+
T Consensus 507 ~~L~~~~ls~~y~~~~--~i---l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~~-~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPGGP--LL---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAKV-RMA 575 (718)
T ss_pred ceEEEEeeEEEeCCCC--ee---EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCce-eEE
Confidence 5799999999996432 35 666999999999999999999999999999999999 999999986521 112
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
|++|. ..... .+.++..++... .. .....+++..+++.+++.+.
T Consensus 576 yv~Q~--------------~~~~l-~~~~~~~~~~~~-------------~~-~~~~~~~i~~~L~~~gl~~~------- 619 (718)
T PLN03073 576 VFSQH--------------HVDGL-DLSSNPLLYMMR-------------CF-PGVPEQKLRAHLGSFGVTGN------- 619 (718)
T ss_pred EEecc--------------ccccC-CcchhHHHHHHH-------------hc-CCCCHHHHHHHHHHCCCChH-------
Confidence 22221 00000 011111110000 00 01123567788999999742
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~~ 299 (361)
.+++++.+||||||||++||||| ||||++||. +.|||+||| ..+..+
T Consensus 620 ---------~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~ 690 (718)
T PLN03073 620 ---------LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGS 690 (718)
T ss_pred ---------HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh
Confidence 24789999999999999999999 999999763 459999999 567789
Q ss_pred cchhhHhhhhhhhc-CCCCcc
Q 018083 300 TDRARIRTYLGELL-GIPPAK 319 (361)
Q Consensus 300 aDri~vvl~~G~iv-~~g~~~ 319 (361)
||+++ +|++|+++ ..|+.+
T Consensus 691 ~drv~-~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 691 VDELW-VVSEGKVTPFHGTFH 710 (718)
T ss_pred CCEEE-EEECCEEEEeCCCHH
Confidence 99996 59999987 556554
No 346
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=6.6e-29 Score=274.65 Aligned_cols=207 Identities=15% Similarity=0.111 Sum_probs=163.2
Q ss_pred HHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhh
Q 018083 66 AVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 66 ~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I 137 (361)
.|+.++|..+...+.. ....++++|.++++.+....+. |+||||+|++|+.+||+||.|||||||+.+|
T Consensus 491 ~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054|consen 491 KRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred HHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 3999999755332111 3347999999999976332235 6669999999999999999999999999999
Q ss_pred hhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC
Q 018083 138 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 217 (361)
Q Consensus 138 ~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~ 217 (361)
.|-++ ..+|.|.++| .++||+|.+.++..+|++||.||.+.
T Consensus 568 LGEm~-----~~sG~v~v~g----------------------------siaYv~Q~pWI~ngTvreNILFG~~~------ 608 (1381)
T KOG0054|consen 568 LGEMP-----KLSGSVAVNG----------------------------SVAYVPQQPWIQNGTVRENILFGSPY------ 608 (1381)
T ss_pred hcCcc-----cccceEEEcC----------------------------eEEEeccccHhhCCcHHHhhhcCccc------
Confidence 99999 9999999876 16789999999999999999998763
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---- 284 (361)
.+++-+++++..+|..++.-.+++=-++| .++..+||||||||+++|||+ |.|.|++|.
T Consensus 609 --d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeI------GErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 609 --DEERYDKVIKACALKKDLEILPFGDLTEI------GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred --cHHHHHHHHHHccCHhHHhhcCCCCccee------cCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 22344445556666554322223323333 445568999999999999999 999999653
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|+|++|| -.....||.|+ +|++|+|.+.|+.+++..
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Ii-vl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQII-VLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEE-EecCCeEecccCHHHHHh
Confidence 899999999 67778899995 699999999999999874
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=5.4e-29 Score=281.89 Aligned_cols=193 Identities=14% Similarity=0.091 Sum_probs=150.1
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++||++.|+.+ ...++ |++||++|++|++++|+||||||||||+++|+|+.+.+. |++|+|.++|+++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i---L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~--~~~G~I~i~G~~~~-- 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI---LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLD-- 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECC--
Confidence 57899999999521 11356 566999999999999999999999999999999986332 68899999998763
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. +.++.++||+|+..+++. ++.+++.++..... ..+.++..++++++++.+++.+
T Consensus 832 -------------~----~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~----- 889 (1394)
T TIGR00956 832 -------------S----SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES----- 889 (1394)
T ss_pred -------------h----hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-----
Confidence 0 234567899998655554 99999988653221 1122344567888999999976
Q ss_pred EEEEEEEEechhhhhhccC----Cchhhhhhhhhhhhcc----------CCCceeecC----------------CccEEE
Q 018083 241 VNFVIFVVDGLAVLKSMEG----DSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~----~LSGGqrQRvaIArAL----------DEPt~~L~~----------------g~tvIi 290 (361)
.+++.+. +||||||||++||+|| ||||++||. |+|||+
T Consensus 890 ------------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~ 957 (1394)
T TIGR00956 890 ------------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957 (1394)
T ss_pred ------------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3466655 7999999999999988 999999763 899999
Q ss_pred EEcC--c-cccccchhhHhhhhh-hhcCCCCcc
Q 018083 291 VTHG--D-LLSLTDRARIRTYLG-ELLGIPPAK 319 (361)
Q Consensus 291 iTH~--~-~~~~aDri~vvl~~G-~iv~~g~~~ 319 (361)
+||+ . +...||+++ +|++| +++..|++.
T Consensus 958 t~H~~~~~~~~~~D~vl-~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 958 TIHQPSAILFEEFDRLL-LLQKGGQTVYFGDLG 989 (1394)
T ss_pred EecCCCHHHHHhcCEEE-EEcCCCEEEEECCcc
Confidence 9993 2 346799996 59987 999999874
No 348
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=9.2e-29 Score=231.80 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=134.4
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
++|+++ |||+||+|++++++|||||||||++|+|+|++. |++|.|.++|.+... ++..
T Consensus 37 ~~AVqd---isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-----p~~G~v~V~G~~Pf~----~~~~---------- 94 (325)
T COG4586 37 IEAVQD---ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-----PTSGKVRVNGKDPFR----RREE---------- 94 (325)
T ss_pred hhhhhe---eeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-----cCCCeEEecCcCcch----hHHH----------
Confidence 467555 999999999999999999999999999999999 999999999976531 0000
Q ss_pred eecCCCCccc--------ccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechh
Q 018083 181 YDTRSLSDDA--------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLA 252 (361)
Q Consensus 181 ~d~r~~i~~v--------~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~ 252 (361)
..+.+++| ++.+.+-...+.+.|. ..+.+..+++...+-+.+++++
T Consensus 95 --~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy-------~Ipd~~F~~r~~~l~eiLdl~~----------------- 148 (325)
T COG4586 95 --YLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY-------EIPDDEFAERLDFLTEILDLEG----------------- 148 (325)
T ss_pred --HHHHHHHHhhhhheeeeechhhhhHHHHHHHH-------hCCHHHHHHHHHHHHHHhcchh-----------------
Confidence 00011111 1112111112222222 3455777888888999999988
Q ss_pred hhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cccccccchhh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRAR 304 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~ 304 (361)
+++.+.+.||-|||.|+.||.|| ||||.+||- +.||++.|| +++.++||||+
T Consensus 149 ~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~ 228 (325)
T COG4586 149 FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228 (325)
T ss_pred hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheE
Confidence 45899999999999999999998 999999752 999999999 89999999996
Q ss_pred HhhhhhhhcCCCCccccccC
Q 018083 305 IRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 305 vvl~~G~iv~~g~~~~i~~~ 324 (361)
.++.|+++.+|+.+++..+
T Consensus 229 -~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 229 -LIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred -EeeCCcEeecccHHHHHHH
Confidence 5999999999888776443
No 349
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=8.2e-29 Score=282.17 Aligned_cols=210 Identities=15% Similarity=0.071 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHhHHHHHhh---hccccccccceeeecCc-------------------------------ceeeccccce
Q 018083 63 RRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPG-------------------------------AWIENVGGMT 108 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~---~~~~lei~nl~~~Y~~~-------------------------------~~~~~l~~L~ 108 (361)
....|++++|+.++..... ....++++|+++.|... .+.++ |+
T Consensus 367 ~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---l~ 443 (1490)
T TIGR01271 367 GAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPV---LK 443 (1490)
T ss_pred HHHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcc---ee
Confidence 3445999999754321111 12248889999988421 01135 66
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCc
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 188 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~ 188 (361)
|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++| .++
T Consensus 444 ~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g----------------------------~ia 490 (1490)
T TIGR01271 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSG----------------------------RIS 490 (1490)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECC----------------------------EEE
Confidence 6999999999999999999999999999999999 9999999876 156
Q ss_pred ccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhh
Q 018083 189 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 268 (361)
Q Consensus 189 ~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQR 268 (361)
|++|++.+++.++.+||.++... +.. +..++++..++.+.+...++..-+ .....+..||||||||
T Consensus 491 yv~Q~~~l~~~Ti~eNI~~g~~~----~~~----~~~~~~~~~~L~~~l~~l~~g~~t------~vg~~g~~LSgGqkqR 556 (1490)
T TIGR01271 491 FSPQTSWIMPGTIKDNIIFGLSY----DEY----RYTSVIKACQLEEDIALFPEKDKT------VLGEGGITLSGGQRAR 556 (1490)
T ss_pred EEeCCCccCCccHHHHHHhcccc----chH----HHHHHHHHHhHHHHHHhccccccc------cccCcCCCcCHHHHHH
Confidence 78888888888999999987531 111 122223333333221111111111 2255678999999999
Q ss_pred hhhhhcc---------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccc
Q 018083 269 QIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 269 vaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
++||||+ |||+++||. ++|+|++|| ......||+|+ +|++|++++.|+++++.
T Consensus 557 i~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii-~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 557 ISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL-LLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEE-EEECCEEEEEcCHHHHH
Confidence 9999999 999999753 789999999 33345699995 59999999999988776
Q ss_pred c
Q 018083 323 D 323 (361)
Q Consensus 323 ~ 323 (361)
.
T Consensus 636 ~ 636 (1490)
T TIGR01271 636 A 636 (1490)
T ss_pred h
Confidence 4
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.94 E-value=6.9e-28 Score=209.40 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=101.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
++++|++++|++. ++ |+++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|..
T Consensus 1 l~~~~l~~~~~~~---~~---l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGK---LL---LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCc---eE---EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 4689999999753 35 666999999999999999999999999999999999 999999987620
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.++|++|
T Consensus 64 --------------------~i~~~~~----------------------------------------------------- 70 (144)
T cd03221 64 --------------------KIGYFEQ----------------------------------------------------- 70 (144)
T ss_pred --------------------EEEEEcc-----------------------------------------------------
Confidence 0111111
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccccccc
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLTD 301 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~~aD 301 (361)
||+||+||++||||| |||+++||. +.|+|++|| +.+..+||
T Consensus 71 ---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d 135 (144)
T cd03221 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 999999999999999 999999763 789999999 56778899
Q ss_pred hhhHhhhhhh
Q 018083 302 RARIRTYLGE 311 (361)
Q Consensus 302 ri~vvl~~G~ 311 (361)
+++ +|++|+
T Consensus 136 ~v~-~l~~g~ 144 (144)
T cd03221 136 KII-ELEDGK 144 (144)
T ss_pred EEE-EEeCCC
Confidence 995 588875
No 351
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=7.6e-28 Score=252.30 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=128.7
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
++++++|+... .+ |++++ .+++|++++|+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 77 ~~~~~~yg~~~--~~---L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 77 EEPVHRYGVNG--FK---LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred cCceEEecCCc--ee---EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCC
Confidence 44899998643 35 66699 899999999999999999999999999999 9999997 888
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
.++.. +.. .+.. ........+.++++.+.++..++.+++.. ...++++.++++.+++..
T Consensus 146 ~~l~~-~~~---~~~~-----~~~~~~~~~q~~~~~p~~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~-- 204 (590)
T PRK13409 146 TELQN-YFK---KLYN-----GEIKVVHKPQYVDLIPKVFKGKVRELLKK----------VDERGKLDEVVERLGLEN-- 204 (590)
T ss_pred hHHHH-HHH---HHhc-----cCcceeecccchhhhhhhhcchHHHHHHh----------hhHHHHHHHHHHHcCCch--
Confidence 77641 100 0000 00000112344455555555577777652 123456788899999976
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 293 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH 293 (361)
.+++.+.+||||||||++||+|| ||||++||. ++|||+|||
T Consensus 205 ---------------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsH 269 (590)
T PRK13409 205 ---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269 (590)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899999999999999999999 999999752 789999999
Q ss_pred --CccccccchhhHhhhh
Q 018083 294 --GDLLSLTDRARIRTYL 309 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~ 309 (361)
+.+..+||++. +|++
T Consensus 270 d~~~l~~~~D~v~-vl~~ 286 (590)
T PRK13409 270 DLAVLDYLADNVH-IAYG 286 (590)
T ss_pred CHHHHHHhCCEEE-EEeC
Confidence 56778999995 4865
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=4.1e-28 Score=274.81 Aligned_cols=185 Identities=13% Similarity=0.071 Sum_probs=139.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+|+|+++++||+++|+||||||||||+|+|+|+.... ..|++|+|.++|+++.. .. ...++.
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~---------------~~-~~~r~~ 139 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEE---------------IK-KHYRGD 139 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHH---------------HH-hhcCce
Confidence 66699999999999999999999999999999986310 01789999999987641 11 123456
Q ss_pred CcccccchHHHHH-HHHhccccceeEEec------CCChhhhhh-hcccccccCCCcceeEEEEEEEEEEechhhhhhcc
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIRR------SDSSSLRNR-MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 258 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~~------~~~~~~~~~-v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~ 258 (361)
++|++|+..+++. ++.+++.++...... ..+++..++ ++.+++.+||.+... ..+.+.++
T Consensus 140 i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~------------t~vg~~~~ 207 (1394)
T TIGR00956 140 VVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRN------------TKVGNDFV 207 (1394)
T ss_pred eEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccC------------ceeCCCcC
Confidence 8889998777776 999999886542211 111222223 355788999976210 00124456
Q ss_pred CCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcC---ccccccchhhHhhhh
Q 018083 259 GDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG---DLLSLTDRARIRTYL 309 (361)
Q Consensus 259 ~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~---~~~~~aDri~vvl~~ 309 (361)
.+||||||||++||+|| ||||++||. |+|||+++|+ .+..++|+++ +|++
T Consensus 208 ~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~-~L~~ 286 (1394)
T TIGR00956 208 RGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI-VLYE 286 (1394)
T ss_pred CCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE-EEeC
Confidence 78999999999999998 999999753 7899999993 4678999996 5999
Q ss_pred hhhcCCCCcccc
Q 018083 310 GELLGIPPAKQI 321 (361)
Q Consensus 310 G~iv~~g~~~~i 321 (361)
|+++..|+++++
T Consensus 287 G~iv~~G~~~~~ 298 (1394)
T TIGR00956 287 GYQIYFGPADKA 298 (1394)
T ss_pred CeEEEECCHHHH
Confidence 999999999877
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=1.2e-27 Score=270.98 Aligned_cols=192 Identities=10% Similarity=0.044 Sum_probs=147.5
Q ss_pred ccccccceeeecCc----------ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 85 LTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 85 ~lei~nl~~~Y~~~----------~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
.+.++||++..+.. ...++ |++||++|++|++++|+||||||||||+++|+|..+.+ +.+|+|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i---L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL---LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE---eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEE
Confidence 48899999886411 11246 56699999999999999999999999999999987622 3689999
Q ss_pred ecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEe--cCCChhhhhhhccccccc
Q 018083 155 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 155 i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~--~~~~~~~~~~v~~~l~~~ 231 (361)
++|.+.. . ...++.++||+|+..+++. ++.+++.++..... ..+.++..+.++++++.+
T Consensus 941 inG~~~~---------------~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~l 1002 (1470)
T PLN03140 941 ISGFPKK---------------Q---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELV 1002 (1470)
T ss_pred ECCccCC---------------h---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHC
Confidence 9997653 0 1123457889998777666 99999988643211 112233445688899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhcc-----CCchhhhhhhhhhhhcc---------CCCceeecC-------------
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 284 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~-----~~LSGGqrQRvaIArAL---------DEPt~~L~~------------- 284 (361)
+|.+ .++..+ .+||||||||++||++| ||||++||.
T Consensus 1003 gL~~-----------------~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 1003 ELDN-----------------LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred CChh-----------------HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9976 335554 58999999999999999 999999763
Q ss_pred ---CccEEEEEc--C-ccccccchhhHhhhh-hhhcCCCCc
Q 018083 285 ---DKPVVVVTH--G-DLLSLTDRARIRTYL-GELLGIPPA 318 (361)
Q Consensus 285 ---g~tvIiiTH--~-~~~~~aDri~vvl~~-G~iv~~g~~ 318 (361)
|+|||++|| . ++...||+++ +|++ |+++..|++
T Consensus 1066 ~~~g~tVI~t~Hq~~~~i~~~~D~vl-lL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1066 VDTGRTVVCTIHQPSIDIFEAFDELL-LMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHCCCEEEEEeCCCCHHHHHhCCEEE-EEcCCCEEEEECCc
Confidence 899999999 3 3568899996 5986 899998886
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=1.5e-27 Score=270.37 Aligned_cols=195 Identities=15% Similarity=0.136 Sum_probs=147.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecccccCcceEeEeeeecCCCcceeeeec
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 183 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~ 183 (361)
|+|+|+.|++|++++|+||||||||||+|+|+|.++ |+ +|+|.++|.++. .+. .
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~---------------~~~---~ 237 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLN---------------EFV---P 237 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEech---------------hhc---c
Confidence 566999999999999999999999999999999998 77 999999998764 111 1
Q ss_pred CCCCcccccchHHHHH-HHHhccccceeEEecC---------CChhh------------------------hhhhccccc
Q 018083 184 RSLSDDASDNINMIKL-WIMEGVRHGELVIRRS---------DSSSL------------------------RNRMRCKAH 229 (361)
Q Consensus 184 r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~---------~~~~~------------------------~~~v~~~l~ 229 (361)
++.++||+|+..+++. ++.+++.++....... .+.+. ...+..+++
T Consensus 238 ~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~ 317 (1470)
T PLN03140 238 RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLK 317 (1470)
T ss_pred cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567889998777766 9999998865422100 00110 012355788
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
.+||.+.. ... +.++++.+||||||||++||++| ||||+|||.
T Consensus 318 ~lGL~~~~-------~t~-----vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~ 385 (1470)
T PLN03140 318 ILGLDICK-------DTI-----VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385 (1470)
T ss_pred HcCCcccc-------Cce-----eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh
Confidence 89987511 000 23667889999999999999998 999999763
Q ss_pred -CccEEEEEc---CccccccchhhHhhhhhhhcCCCCccccc--------cCCCCCCCCchhhhh
Q 018083 285 -DKPVVVVTH---GDLLSLTDRARIRTYLGELLGIPPAKQIF--------DIPESSDPENELIIV 337 (361)
Q Consensus 285 -g~tvIiiTH---~~~~~~aDri~vvl~~G~iv~~g~~~~i~--------~~~~~~~~~~~~~~~ 337 (361)
|+|+|+++| .++..++|+|+ +|++|+++..|+++++. ..|....+++++..+
T Consensus 386 ~g~Tviis~Hqp~~~i~~lfD~vi-lL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v 449 (1470)
T PLN03140 386 TEATVLMSLLQPAPETFDLFDDII-LLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449 (1470)
T ss_pred cCCEEEEEecCCCHHHHHHhheEE-EeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHh
Confidence 789999999 26778999996 59999999999998774 445555555555543
No 355
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=2.3e-27 Score=253.35 Aligned_cols=207 Identities=10% Similarity=0.000 Sum_probs=134.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++. .+ |+++||+|++|+++|||||||||||||+++|+|..... .|.+|+|.+.++.+.+ .
T Consensus 177 ~I~i~nls~~y~~~---~l---l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g-~ 247 (718)
T PLN03073 177 DIHMENFSISVGGR---DL---IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVG-D 247 (718)
T ss_pred eEEEceEEEEeCCC---EE---EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCC-C
Confidence 69999999999753 35 66699999999999999999999999999999975211 2889999877665321 0
Q ss_pred EeEeee-ecCCCcceeeee-cCCCCcccccchHHHHHHHHhccccceeEEecCCCh-------------------hhhhh
Q 018083 165 FLQEYT-IPRGSNSFSLYD-TRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS-------------------SLRNR 223 (361)
Q Consensus 165 ~~~~~~-i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~-------------------~~~~~ 223 (361)
...... +... ...... .+..+++++|++.+.......+...... ...+.. ..+.+
T Consensus 248 ~~t~~~~v~~~--~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 248 DTTALQCVLNT--DIERTQLLEEEAQLVAQQRELEFETETGKGKGANK--DGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhhhcccccccccccc--cccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 000000 0000 000000 0112344455443322222222211000 011111 23455
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------- 284 (361)
+..++..+|+.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 324 ~~~~L~~lgl~~~----------------~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L 387 (718)
T PLN03073 324 AASILAGLSFTPE----------------MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL 387 (718)
T ss_pred HHHHHHHCCCChH----------------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 6667777888532 24788999999999999999999 999999864
Q ss_pred ---CccEEEEEc--CccccccchhhHhhhhhhhc-CCCCcccc
Q 018083 285 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQI 321 (361)
Q Consensus 285 ---g~tvIiiTH--~~~~~~aDri~vvl~~G~iv-~~g~~~~i 321 (361)
+.|||+||| +.+..+||+++ +|++|++. ..|+...+
T Consensus 388 ~~~~~tviivsHd~~~l~~~~d~i~-~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 388 LKWPKTFIVVSHAREFLNTVVTDIL-HLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHcCCEEEEEECCHHHHHHhCCEEE-EEECCEEEEeCCCHHHH
Confidence 789999999 56778899996 59999996 56665443
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.5e-26 Score=202.65 Aligned_cols=130 Identities=19% Similarity=0.258 Sum_probs=101.0
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
+++++++.|.+. .+ ++++||+|++|++++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ~~~~~~~~~~~~---~~---l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~---- 65 (157)
T cd00267 1 EIENLSFRYGGR---TA---LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAK---- 65 (157)
T ss_pred CeEEEEEEeCCe---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc----
Confidence 367899999653 45 666999999999999999999999999999999999 999999999866530
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 246 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~ 246 (361)
......... +++
T Consensus 66 -----------~~~~~~~~~--------------------------------------------i~~------------- 77 (157)
T cd00267 66 -----------LPLEELRRR--------------------------------------------IGY------------- 77 (157)
T ss_pred -----------CCHHHHHhc--------------------------------------------eEE-------------
Confidence 000000000 001
Q ss_pred EEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cccccc
Q 018083 247 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 247 vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~~~~~ 299 (361)
..+||+||+||++||||| |||+++||. ++|+|++|| ..+..+
T Consensus 78 -----------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 78 -----------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred -----------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 012999999999999999 999999753 589999999 567788
Q ss_pred cchhhHhhhhhh
Q 018083 300 TDRARIRTYLGE 311 (361)
Q Consensus 300 aDri~vvl~~G~ 311 (361)
||+++ ++++|+
T Consensus 147 ~d~i~-~l~~g~ 157 (157)
T cd00267 147 ADRVI-VLKDGK 157 (157)
T ss_pred CCEEE-EEeCcC
Confidence 89996 487764
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.7e-26 Score=214.14 Aligned_cols=171 Identities=14% Similarity=0.159 Sum_probs=132.2
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.+| |+||||+|++||.+||||+||||||||+|+|+|+++ |++|+|.++|+-.. +
T Consensus 40 ~~a---L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~------------------l 93 (249)
T COG1134 40 FWA---LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAP------------------L 93 (249)
T ss_pred EEE---ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEeh------------------h
Confidence 567 555999999999999999999999999999999999 99999999985422 0
Q ss_pred eecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCC
Q 018083 181 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 260 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 260 (361)
.+.- .++-+| .|-++||.+..... +..+++.++++++..+..+|.+ +.+.+...
T Consensus 94 i~lg--~Gf~pe------lTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~-----------------fi~~Pvkt 147 (249)
T COG1134 94 IELG--AGFDPE------LTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGD-----------------FIDQPVKT 147 (249)
T ss_pred hhcc--cCCCcc------cchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHH-----------------HhhCchhh
Confidence 0000 111111 02334444322211 3446788889999999999998 56999999
Q ss_pred chhhhhhhhhhhhcc---------CCCceee----------------cCCccEEEEEc--CccccccchhhHhhhhhhhc
Q 018083 261 SDVEKQYNQIVATTF---------NCPYLSF----------------RDDKPVVVVTH--GDLLSLTDRARIRTYLGELL 313 (361)
Q Consensus 261 LSGGqrQRvaIArAL---------DEPt~~L----------------~~g~tvIiiTH--~~~~~~aDri~vvl~~G~iv 313 (361)
+|.||+-|++.|-|. ||-.+.- ..+.|||+||| +.+.++|||++ +|++|++.
T Consensus 148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i-~l~~G~i~ 226 (249)
T COG1134 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAI-WLEHGQIR 226 (249)
T ss_pred ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeE-EEeCCEEE
Confidence 999999999999998 6655541 23899999999 57889999995 59999999
Q ss_pred CCCCccccccC
Q 018083 314 GIPPAKQIFDI 324 (361)
Q Consensus 314 ~~g~~~~i~~~ 324 (361)
..|++++++..
T Consensus 227 ~~G~~~~vi~~ 237 (249)
T COG1134 227 MEGSPEEVIPA 237 (249)
T ss_pred EcCCHHHHHHH
Confidence 99999988764
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=5e-26 Score=204.70 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=100.5
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEe
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 168 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 168 (361)
.|++++|++. .+ ++++ |+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++
T Consensus 4 ~~l~~~~~~~---~~---l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i-------- 63 (177)
T cd03222 4 PDCVKRYGVF---FL---LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGITP-------- 63 (177)
T ss_pred CCeEEEECCE---EE---EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEEE--------
Confidence 6899999763 45 5555 8999999999999999999999999999999 9999999987321
Q ss_pred eeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEE
Q 018083 169 YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 248 (361)
Q Consensus 169 ~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv 248 (361)
++++|+.
T Consensus 64 -------------------~~~~q~~------------------------------------------------------ 70 (177)
T cd03222 64 -------------------VYKPQYI------------------------------------------------------ 70 (177)
T ss_pred -------------------EEEcccC------------------------------------------------------
Confidence 1111110
Q ss_pred echhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------C-ccEEEEEc--Ccccccc
Q 018083 249 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GDLLSLT 300 (361)
Q Consensus 249 ~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g-~tvIiiTH--~~~~~~a 300 (361)
. ||||||||++||||| |||+++||. + .|||++|| ..+..+|
T Consensus 71 ------~-----LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 71 ------D-----LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred ------C-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 0 999999999999999 999999752 3 89999999 4677889
Q ss_pred chhhHhhhhhhhcCCCCccccccCCC
Q 018083 301 DRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 301 Dri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
|+++ +|+++-. ..++|..|.
T Consensus 140 d~i~-~l~~~~~-----~~~~~~~~~ 159 (177)
T cd03222 140 DRIH-VFEGEPG-----VYGIASQPK 159 (177)
T ss_pred CEEE-EEcCCCc-----cceeccCCc
Confidence 9995 4776533 335555554
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=8.6e-27 Score=266.29 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=127.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+. ..
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~----------------------------~~ 722 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAE----------------------------RS 722 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEEC----------------------------Ce
Confidence 666999999999999999999999999999999999 999998752 23
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
++|++|++.++..++.+||.++... ..++..++++..++.+.+...++.. ....++++.+||||||
T Consensus 723 i~yv~Q~~~l~~~Tv~enI~~~~~~--------~~~~~~~~~~~~~l~~~l~~l~~g~------~t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 723 IAYVPQQAWIMNATVRGNILFFDEE--------DAARLADAVRVSQLEADLAQLGGGL------ETEIGEKGVNLSGGQK 788 (1560)
T ss_pred EEEEeCCCccCCCcHHHHHHcCChh--------hHHHHHHHHHHhhhHHHHHHhhccc------hHHhcCCCCCCCHHHH
Confidence 6788888888777999999975321 1112222233222221110000000 0023677889999999
Q ss_pred hhhhhhhcc---------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccc
Q 018083 267 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 267 QRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
||++||||| |||+++||. |+|+|++|| ......||+|+ +|++|++++.|++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii-~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV-ALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEecCHHH
Confidence 999999999 999999763 789999999 34456799995 599999999999988
Q ss_pred cccC
Q 018083 321 IFDI 324 (361)
Q Consensus 321 i~~~ 324 (361)
++..
T Consensus 868 l~~~ 871 (1560)
T PTZ00243 868 FMRT 871 (1560)
T ss_pred HHhC
Confidence 7653
No 360
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=7.1e-26 Score=203.57 Aligned_cols=134 Identities=19% Similarity=0.150 Sum_probs=98.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.++ |+++||+|++|++++|+||||||||||+|+|. +++|++.++|.... +
T Consensus 8 ~~~---l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~~~----------------~-- 57 (176)
T cd03238 8 VHN---LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFLPK----------------F-- 57 (176)
T ss_pred eee---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcccc----------------c--
Confidence 456 55599999999999999999999999999883 24799988764211 0
Q ss_pred eecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCC
Q 018083 181 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 260 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~ 260 (361)
.+..+.+++| .++++.+++... .+++++.+
T Consensus 58 --~~~~~~~~~q--------------------------------~~~l~~~~L~~~----------------~~~~~~~~ 87 (176)
T cd03238 58 --SRNKLIFIDQ--------------------------------LQFLIDVGLGYL----------------TLGQKLST 87 (176)
T ss_pred --ccccEEEEhH--------------------------------HHHHHHcCCCcc----------------ccCCCcCc
Confidence 0111222333 134666777542 13788999
Q ss_pred chhhhhhhhhhhhcc-----------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhhhhh
Q 018083 261 SDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 261 LSGGqrQRvaIArAL-----------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~G~i 312 (361)
||||||||++||||| |||+++||. |+|||++|| ......||+++ +|.+|+.
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~-~l~~g~~ 166 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWII-DFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EECCCCC
Confidence 999999999999998 999999642 899999999 33346799995 5977655
Q ss_pred cCC
Q 018083 313 LGI 315 (361)
Q Consensus 313 v~~ 315 (361)
.-.
T Consensus 167 ~~~ 169 (176)
T cd03238 167 KSG 169 (176)
T ss_pred CCC
Confidence 333
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.91 E-value=1.2e-26 Score=197.64 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=99.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.++. .......+..
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~---------------~~~~~~~~~~ 60 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDIS---------------DIDIEELRRR 60 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGT---------------TSHHHHHHHT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----cccccccccccccc---------------cccccccccc
Confidence 567999999999999999999999999999999999 99999999998886 2233345567
Q ss_pred CcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
+++++|+..++.. ++.+| ...+++.++++.+++.+.. ....++.+.+||+||
T Consensus 61 i~~~~~~~~~~~~~tv~~~--------------~~~~~~~~~l~~l~~~~~~-------------~~~~~~~~~~LS~Ge 113 (137)
T PF00005_consen 61 IGYVPQDPQLFPGLTVREN--------------ESDERIEEVLKKLGLEDLL-------------DRKIGQRASSLSGGE 113 (137)
T ss_dssp EEEEESSHCHHTTSBHHHH--------------HHHHHHHHHHHHTTHGGGT-------------GSBGTSCGGGSCHHH
T ss_pred ccccccccccccccccccc--------------ccccccccccccccccccc-------------ccccccccchhhHHH
Confidence 7888999777766 46655 2334566677777765511 002355569999999
Q ss_pred hhhhhhhhcc---------CCCce
Q 018083 266 QYNQIVATTF---------NCPYL 280 (361)
Q Consensus 266 rQRvaIArAL---------DEPt~ 280 (361)
|||++||||| ||||+
T Consensus 114 ~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 114 KQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999 88874
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=3e-26 Score=236.43 Aligned_cols=199 Identities=17% Similarity=0.142 Sum_probs=132.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+.+|+++++++.|+++ .+ |+++||+|.+|+++||||+||||||||+|+|+|.+. |++|+|...+. ...
T Consensus 1 m~~i~~~~ls~~~g~~---~l---~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~~v 68 (530)
T COG0488 1 MSMITLENLSLAYGDR---PL---LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-LRV 68 (530)
T ss_pred CceEEEeeeEEeeCCc---ee---ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-ceE
Confidence 4579999999999764 44 666999999999999999999999999999999999 99999998753 223
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH-H---HHH--HHHhccccc------ee--EEecCCChhhhhhhcccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-M---IKL--WIMEGVRHG------EL--VIRRSDSSSLRNRMRCKA 228 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l---~~~--ti~~ni~~~------~~--~~~~~~~~~~~~~v~~~l 228 (361)
++..|.... .+......+|.+... + ... .+....... .. .....+.-..+.++..++
T Consensus 69 ~~l~Q~~~~---------~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 69 GYLSQEPPL---------DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred EEeCCCCCc---------CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 333333221 111111111111100 0 000 000000000 00 000011123346677788
Q ss_pred cccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------------C
Q 018083 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------D 285 (361)
Q Consensus 229 ~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------------g 285 (361)
..+|+.+ . +++..+||||||.|++||+|| ||||..||- |
T Consensus 140 ~gLg~~~-----------------~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g 201 (530)
T COG0488 140 LGLGFPD-----------------E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG 201 (530)
T ss_pred hcCCCCc-----------------c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC
Confidence 8888887 2 678899999999999999999 999999752 6
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcC-CCCccccc
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIF 322 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~-~g~~~~i~ 322 (361)
|+|+||| ..+-..|++|+ -++.|++.. .|.-+...
T Consensus 202 -tviiVSHDR~FLd~V~t~I~-~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 202 -TVIVVSHDRYFLDNVATHIL-ELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred -cEEEEeCCHHHHHHHhhheE-EecCCceeEecCCHHHHH
Confidence 9999999 47779999995 699998754 35444333
No 363
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=4.9e-26 Score=239.44 Aligned_cols=196 Identities=17% Similarity=0.203 Sum_probs=158.5
Q ss_pred ccccccceeeecCcc--eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~--~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.+++++....... ..++ |++||.++++||++||+||||||||||+++|+|-...+. ..+|+|.+||+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i---L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~--~~~G~ilvNG~~~~- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI---LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL--KLSGEILLNGRPRD- 98 (613)
T ss_pred eeEEEEEEEEecCCCCcccee---eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC--cceEEEEECCccCc-
Confidence 366778777765431 2356 555999999999999999999999999999999997443 58999999996543
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
....+...+||.|+-.+++. ||.|.+.+....... .+.++.+++++++++.+|+..
T Consensus 99 -----------------~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~---- 157 (613)
T KOG0061|consen 99 -----------------SRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK---- 157 (613)
T ss_pred -----------------hhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh----
Confidence 12234567899999888887 999999987654322 255788899999999999985
Q ss_pred EEEEEEEEEechhhhhhccC-----Cchhhhhhhhhhhhcc---------CCCceeecC----------------CccEE
Q 018083 240 KVNFVIFVVDGLAVLKSMEG-----DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 289 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~-----~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvI 289 (361)
..+...+ .+|||||+|++||.-| ||||+|||. |+|||
T Consensus 158 -------------~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi 224 (613)
T KOG0061|consen 158 -------------CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVI 224 (613)
T ss_pred -------------hccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEE
Confidence 3355554 6999999999999987 999999763 99999
Q ss_pred EEEc---CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 290 VVTH---GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 290 iiTH---~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++-| ..+..+.|+++ +|..|+++..|+++++
T Consensus 225 ~tIHQPss~lf~lFD~l~-lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 225 CTIHQPSSELFELFDKLL-LLSEGEVVYSGSPREL 258 (613)
T ss_pred EEEeCCcHHHHHHHhHhh-hhcCCcEEEecCHHHH
Confidence 9999 46778999996 5999999999999865
No 364
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=6.9e-26 Score=205.93 Aligned_cols=221 Identities=13% Similarity=0.188 Sum_probs=170.0
Q ss_pred ccccccccceeeec-CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 83 GSLTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 83 ~~~lei~nl~~~Y~-~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
|+++.++||+..+. +.++++++++ +|+++++||+-+|||+||||||-..|+|+|+.++++. .+.-...+++.++.
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~---v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~-vTADR~Rf~~idLL 76 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDR---VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR-VTADRMRFDDIDLL 76 (330)
T ss_pred CCcccccceEEEEecCCCceEeeee---eeeeeccceeeeeeccCCCchhHHHHHHhcccccceE-EEhhhcccccchhh
Confidence 57899999999984 3345789777 9999999999999999999999999999999997764 45567777776654
Q ss_pred cceEeEeeeecCCCcceeeeecCC----CCcccccchHHH--HH-HHHhccccceeEEec-----CCChhhhhhhccccc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRS----LSDDASDNINMI--KL-WIMEGVRHGELVIRR-----SDSSSLRNRMRCKAH 229 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~----~i~~v~q~~~l~--~~-ti~~ni~~~~~~~~~-----~~~~~~~~~v~~~l~ 229 (361)
. ......|. .++++||++.-. +. .|...+..+.+.... ......++++.++|+
T Consensus 77 ~---------------L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLH 141 (330)
T COG4170 77 R---------------LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLH 141 (330)
T ss_pred c---------------CChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHH
Confidence 1 22222222 346678887532 22 555544443332111 111334677889999
Q ss_pred ccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------
Q 018083 230 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 284 (361)
Q Consensus 230 ~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------- 284 (361)
++|+.+ .++.+.++|.+|..|+-|+|+||.|+ ||||.++++
T Consensus 142 rVGIKd--------------HkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn 207 (330)
T COG4170 142 RVGIKD--------------HKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN 207 (330)
T ss_pred Hhcccc--------------HHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc
Confidence 999976 33478999999999999999999998 999988532
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhhh
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 337 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~~ 337 (361)
++||++++| ..+.++||+|.| |+.|+-++.+++++++..|.|+|++.++.++
T Consensus 208 ~~TtILL~s~Dl~~is~W~d~i~V-lYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~ 262 (330)
T COG4170 208 SNTTILLISHDLQMISQWADKINV-LYCGQTVESAPSEELVTMPHHPYTQALIRAI 262 (330)
T ss_pred CCceEEEEcccHHHHHHHhhheEE-EEecccccccchhHHhcCCCCchHHHHHHhC
Confidence 899999999 467799999985 9999999999999999999999987766554
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.4e-26 Score=201.15 Aligned_cols=188 Identities=18% Similarity=0.171 Sum_probs=142.1
Q ss_pred ccccccceeeec----CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 85 LTDAKNKILSYT----PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~----~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.|.++|++|+|. ++-..++ ++++||+|+.||+++|-||||||||||+|+|.+-|. |++|+|++.-..-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV---~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPV---LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeecCCEEeee---eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcc
Confidence 588999999884 2323566 555999999999999999999999999999999999 9999999875442
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.......+ + .-.+.-.+..+|||.|.....|. ...+-++.++.. ++.+.+..+.++..++.++.+...
T Consensus 76 ~vdl~~a~---p----r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~-~gv~~~~a~~~a~~Ll~rLnlper--- 144 (235)
T COG4778 76 WVDLVTAE---P----REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA-RGVPREVARAKAADLLTRLNLPER--- 144 (235)
T ss_pred hhhhhccC---h----HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCCHH---
Confidence 21000000 0 01122234568999888776666 445555555442 345667788899999999999875
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 294 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~ 294 (361)
++.-.|.++|||+||||-|||.+ ||||++||. |..+|=|-|+
T Consensus 145 -------------LW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD 211 (235)
T COG4778 145 -------------LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211 (235)
T ss_pred -------------HhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc
Confidence 57889999999999999999998 999999863 8999999994
Q ss_pred -ccc-cccchhh
Q 018083 295 -DLL-SLTDRAR 304 (361)
Q Consensus 295 -~~~-~~aDri~ 304 (361)
++. ..|||+.
T Consensus 212 eevre~vadR~~ 223 (235)
T COG4778 212 EEVREAVADRLL 223 (235)
T ss_pred HHHHHHHhhhee
Confidence 443 6789984
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.9e-26 Score=201.53 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=120.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++.+||+..-+.. .. +.++||++.+||++-|.||||||||||+|+|+|+.+ |++|+|+++|..+..
T Consensus 2 ~L~a~~L~~~R~e~---~l---f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~-- 68 (209)
T COG4133 2 MLEAENLSCERGER---TL---FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQN-- 68 (209)
T ss_pred cchhhhhhhccCcc---ee---ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCcc--
Confidence 57889999886553 34 677999999999999999999999999999999999 999999999988751
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.........-|+.-.+-+- ..|+.||+.|-...+.. .....+.++++.+||..
T Consensus 69 --------------~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g-------- 122 (209)
T COG4133 69 --------------VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAG-------- 122 (209)
T ss_pred --------------chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCccc--------
Confidence 0000111112222122222 22777887764432221 23456778899999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
+.+-+..+||-|||+|+||||-+ |||+++||. |--||..||
T Consensus 123 ---------~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 123 ---------LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred ---------ccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 55889999999999999999987 999999864 667889999
No 367
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.91 E-value=2.1e-25 Score=243.42 Aligned_cols=196 Identities=15% Similarity=0.130 Sum_probs=167.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..+.+++|++.|+.... |+++ +||.|++||+.+++|||||||||++|+|.|..+ |++|++++.|.++..
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~---ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~- 631 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRG---LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITV- 631 (885)
T ss_pred ceEEEcceeeeecchhh--hhcc---eEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCcccc-
Confidence 56889999999986532 7666 999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+.+..+||.||...+... |.++++.+-... ++.++.+..+.++.+++.+++.+
T Consensus 632 -------------~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arl-rG~~~~di~~~v~~ll~~~~L~~------- 690 (885)
T KOG0059|consen 632 -------------STDFQQVRKQLGYCPQFDALWEELTGREHLEFYARL-RGLPRSDIGSAIEKLLRLVGLGP------- 690 (885)
T ss_pred -------------ccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHH-cCCChhHHHHHHHHHHHHcCChh-------
Confidence 12223366779999999888877 888887664432 34556778888999999999998
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
.++++...+|||+|+|+++|.|+ |||++|+|+ ++.||+.|| ++
T Consensus 691 ----------~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE 760 (885)
T KOG0059|consen 691 ----------YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE 760 (885)
T ss_pred ----------hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 45888999999999999999998 999999875 559999999 78
Q ss_pred cccccchhhHhhhhhhhcCCCCccccc
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIF 322 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~ 322 (361)
+..+|||+++ |.+|++...|+++++-
T Consensus 761 ~EaLCtR~aI-mv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 761 AEALCTRTAI-MVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHhhhhhe-eecCeeEEecChHHHH
Confidence 8999999986 9999999999998874
No 368
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.9e-24 Score=211.10 Aligned_cols=182 Identities=14% Similarity=0.223 Sum_probs=141.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.||++|+.+.|.+.... +--||++|++||++-|+|.||||||||+++|.|+++ |++|+|++||+++.
T Consensus 322 ~lelrnvrfay~~~~Fh-----vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~--- 388 (546)
T COG4615 322 TLELRNVRFAYQDNAFH-----VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVS--- 388 (546)
T ss_pred ceeeeeeeeccCcccce-----ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCC---
Confidence 59999999999875433 455999999999999999999999999999999999 99999999999987
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.-.+.+.|+.++-||-|..+|+..+ +.+.....+.+..+++++.+.++.+
T Consensus 389 ------------~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as~q~i~~~LqrLel~~kts------ 438 (546)
T COG4615 389 ------------AEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQRLELAHKTS------ 438 (546)
T ss_pred ------------CCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCChHHHHHHHHHHHHhhhhc------
Confidence 4566778888888888888887643 1122245567777788887766431
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc--CCCceeec------------------------CCccEEEEEcCcc-c
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCPYLSFR------------------------DDKPVVVVTHGDL-L 297 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--DEPt~~L~------------------------~g~tvIiiTH~~~-~ 297 (361)
|.|. .--+-.||-|||+|+|+--|+ +.|..-+| .|+||+.|||++. .
T Consensus 439 --l~d~----~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 439 --LNDG----RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred --ccCC----cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 1111 123446999999999999998 55554433 2999999999554 4
Q ss_pred cccchhhHhhhhhhhcCCC
Q 018083 298 SLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g 316 (361)
..|||+. .|.+|++++.-
T Consensus 513 ~~ADrll-~~~~G~~~e~t 530 (546)
T COG4615 513 IHADRLL-EMRNGQLSELT 530 (546)
T ss_pred hhHHHHH-HHhcCceeecc
Confidence 7789995 69999998864
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=2.1e-24 Score=200.83 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=61.9
Q ss_pred cccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC---------
Q 018083 225 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--------- 284 (361)
Q Consensus 225 ~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~--------- 284 (361)
.++++.+++.+. .+++++.+||||||||++||||| ||||++||.
T Consensus 118 ~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~ 181 (226)
T cd03270 118 LGFLVDVGLGYL----------------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET 181 (226)
T ss_pred HHHHHHCCCCcc----------------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 457888998752 24889999999999999999987 999999652
Q ss_pred -------CccEEEEEc-CccccccchhhHhh------hhhhhcCCC
Q 018083 285 -------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIP 316 (361)
Q Consensus 285 -------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g 316 (361)
|.|||++|| .....+||+++ +| ++|+|++.|
T Consensus 182 l~~~~~~g~tii~itH~~~~~~~~d~i~-~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 182 LKRLRDLGNTVLVVEHDEDTIRAADHVI-DIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCEEEEEEeCHHHHHhCCEEE-EeCCCccccCCEEEecC
Confidence 889999999 33346899995 59 899998875
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.87 E-value=1.4e-23 Score=216.72 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=129.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+++++|+++.|+++. .+ ++++||.|.+|+.+|||||||+|||||+|+|+|... |.+|.|.+. ..+..
T Consensus 319 ~~vl~~~~~~~~y~~~~--~l---~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g-~~v~i 387 (530)
T COG0488 319 KLVLEFENVSKGYDGGR--LL---LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVG-ETVKI 387 (530)
T ss_pred CeeEEEeccccccCCCc--ee---ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeC-CceEE
Confidence 34799999999997653 34 666999999999999999999999999999999999 999999874 34555
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+|+.|...- +.+. ++.+.+.... ....+..++..|..+++..+.
T Consensus 388 gyf~Q~~~~------------------------l~~~~t~~d~l~~~~-------~~~~e~~~r~~L~~f~F~~~~---- 432 (530)
T COG0488 388 GYFDQHRDE------------------------LDPDKTVLEELSEGF-------PDGDEQEVRAYLGRFGFTGED---- 432 (530)
T ss_pred EEEEehhhh------------------------cCccCcHHHHHHhhC-------ccccHHHHHHHHHHcCCChHH----
Confidence 565554310 0011 2223332111 111267788899999998743
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
..+++..||||||-|+++|+.+ ||||..||- .-|||+||| ..+.
T Consensus 433 ------------~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 433 ------------QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred ------------HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 4789999999999999999998 999999762 568999999 4778
Q ss_pred cccchhhHhhhhhhhcC
Q 018083 298 SLTDRARIRTYLGELLG 314 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~ 314 (361)
.+|+++++ +.+ ++..
T Consensus 501 ~va~~i~~-~~~-~~~~ 515 (530)
T COG0488 501 RVATRIWL-VED-KVEE 515 (530)
T ss_pred hhcceEEE-EcC-ceeE
Confidence 99999964 665 4433
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.87 E-value=6.5e-24 Score=188.24 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=138.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++++++...- . |--+|.++..||++=+|||||||||||+-.++|+. |.+|+|.++|.++.
T Consensus 3 l~qln~v~~~t-----R-----L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~l~--- 63 (248)
T COG4138 3 LMQLNDVAEST-----R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQPLE--- 63 (248)
T ss_pred eeeeccccccc-----c-----ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcchh---
Confidence 46677776542 1 44488899999999999999999999999999999 57999999999875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchH-HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~-l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+...++.+.-+|..|+.. .|..-|+.-+.+ ..+.++....+.++..++++.++
T Consensus 64 ------------~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L------~qP~~~~a~~i~~i~~~L~l~DK------- 118 (248)
T COG4138 64 ------------AWSATELARHRAYLSQQQTPPFAMPVWHYLTL------HQPDKTRTELLNDVAGALALDDK------- 118 (248)
T ss_pred ------------HHhHhHHHHHHHHHhhccCCcchhhhhhhhhh------cCchHHHHHHHHHHHhhhcccch-------
Confidence 2222223333334333211 121122222221 11235556677788899999994
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc----------------CCCceeec----------------CCccEEEE
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFR----------------DDKPVVVV 291 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPt~~L~----------------~g~tvIii 291 (361)
+.+..++||||+.|||-+|-.. |||.++|| .|.+|||.
T Consensus 119 ----------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims 188 (248)
T COG4138 119 ----------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188 (248)
T ss_pred ----------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 4899999999999999999875 99999964 29999999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+| +.-.+.||++++ ++.|+++..|..++++..+
T Consensus 189 ~HDLNhTLrhA~~~wL-L~rG~l~~~G~~~eVlt~~ 223 (248)
T COG4138 189 SHDLNHTLRHAHRAWL-LKRGKLLASGRREEVLTPP 223 (248)
T ss_pred ccchhhHHHHHHHHHH-HhcCeEEeecchhhhcChH
Confidence 99 567788999986 9999999999999998754
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=1.1e-22 Score=193.38 Aligned_cols=188 Identities=16% Similarity=0.074 Sum_probs=113.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhh-----hhhcccccccccce-----------eeecccccCcceEeEeee
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERAQ-----------VTYNSSVGDGTYFLQEYT 170 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~-----gl~~~~~~~p~~G~-----------I~i~G~~i~~~~~~~~~~ 170 (361)
|+++|++||.|.+++|+|+||||||||++.+. +.+......|..++ |.++..++....-.....
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 77799999999999999999999999999662 22211100122222 333333331100000000
Q ss_pred ecC-----------CCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 171 IPR-----------GSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 171 i~~-----------~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+.. .+.+..+.+....+.|..++...+.. ++.+++.|-... .. .+++.++++.+||...
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~~-~~~~~~~L~~vgL~~l-- 161 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------PK-IARKLQTLCDVGLGYI-- 161 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------hh-HHHHHHHHHHcCCchh--
Confidence 000 00000001101112333444444444 666665442110 11 2356678889999762
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC----------------CccEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----------------g~tvIi 290 (361)
.+++++.+|||||+||++|||+| ||||++|+. |.|||+
T Consensus 162 --------------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 162 --------------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred --------------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 14889999999999999999987 999999752 899999
Q ss_pred EEc-CccccccchhhHhh------hhhhhcCCCCc
Q 018083 291 VTH-GDLLSLTDRARIRT------YLGELLGIPPA 318 (361)
Q Consensus 291 iTH-~~~~~~aDri~vvl------~~G~iv~~g~~ 318 (361)
+|| ......||+++ +| ++|+|++.|++
T Consensus 228 itH~~~~i~~aD~ii-~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 228 IEHNLDVIKCADWII-DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EeCCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCC
Confidence 999 33446799995 59 89999998864
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.85 E-value=1.7e-22 Score=184.45 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=98.8
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccc----ccccceeeecccccCcceEeEeeeecCCCcceeeeec
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF----ASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 183 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~----~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~ 183 (361)
+++++++++| +++|+||||||||||+++|+++..+... .+..|++.+.|++.. . ...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~ 74 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR-----------------K-PAN 74 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC-----------------C-CCc
Confidence 4589999999 9999999999999999999999861100 012334555554432 0 112
Q ss_pred CCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchh
Q 018083 184 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 263 (361)
Q Consensus 184 r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 263 (361)
+..++++||++..+ ++.. ..+++.++++. .+ ..++.+.+|||
T Consensus 75 ~~~v~~vfq~~~~~---------~~~~---------~~~~~~~~l~~---~~-----------------~~~~~~~~LS~ 116 (197)
T cd03278 75 FAEVTLTFDNSDGR---------YSII---------SQGDVSEIIEA---PG-----------------KKVQRLSLLSG 116 (197)
T ss_pred eEEEEEEEEcCCCc---------eeEE---------ehhhHHHHHhC---CC-----------------ccccchhhcCH
Confidence 34578889988654 1111 12345555555 22 24778999999
Q ss_pred hhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-CccccccchhhH
Q 018083 264 EKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 264 GqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
|||||++||++| |||+++|+. +.|||++|| .....+||+++.
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~ 187 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYG 187 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEE
Confidence 999999999963 999999653 789999999 344578999953
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=3.4e-22 Score=188.44 Aligned_cols=169 Identities=12% Similarity=0.003 Sum_probs=105.5
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccc-ccCcceEeEeeeecCCCcceeeeecCCCCcccc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 191 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~-~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~ 191 (361)
+.+| +++||||||||||||+++|++++. +. .|++.+.+. ++... . . ........+.+++
T Consensus 23 ~~~~-~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~li~~--~-~----------~~~~~~~~v~~~f 83 (251)
T cd03273 23 FDPQ-FNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDLIYK--R-G----------QAGITKASVTIVF 83 (251)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHHhhc--C-C----------CCCCcEEEEEEEE
Confidence 3454 999999999999999999999998 65 457777665 32100 0 0 0000011233445
Q ss_pred cch---------HHHHH-HHHhccccceeEEecC-CChhhhhhhcccccccCCCcceeEEEEEEE------EEEechhhh
Q 018083 192 DNI---------NMIKL-WIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNFVI------FVVDGLAVL 254 (361)
Q Consensus 192 q~~---------~l~~~-ti~~ni~~~~~~~~~~-~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~------~vv~~~~~~ 254 (361)
|++ .+.+. +|..++..+....... ......+++.++++.+++..+- ..++| -+++....+
T Consensus 84 q~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~---~~~~i~Qg~v~~~~~~~~~~ 160 (251)
T cd03273 84 DNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNN---PHFLIMQGRITKVLNMGGVW 160 (251)
T ss_pred EcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCC---ceEEEeehHHHHHHHhHHhh
Confidence 543 12222 5666665543221111 1233457788889999986210 00000 011112245
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
+.++.+||+|||||++||||| ||||++|+. |.|+|+||| ..+...||+++
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEE
Confidence 788999999999999999854 999999642 889999999 67777899993
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.81 E-value=1.3e-20 Score=194.99 Aligned_cols=169 Identities=16% Similarity=0.150 Sum_probs=126.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
...|+++|+++.-+++. .. |++.||+|++|+.+.|.||||||||||+|+|+|+.+ .-+|+|.+-. +
T Consensus 390 ~~~i~~~nl~l~~p~~~--~l---l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~-~--- 455 (604)
T COG4178 390 DHGITLENLSLRTPDGQ--TL---LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPA-D--- 455 (604)
T ss_pred cceeEEeeeeEECCCCC--ee---eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCC-C---
Confidence 36799999999988764 34 677999999999999999999999999999999999 7778776541 1
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
...-|+||.|.+...+.++-|+++.... ....+++.++|.++||.+-..+
T Consensus 456 ----------------------~~~lflpQ~PY~p~GtLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~r--- 505 (604)
T COG4178 456 ----------------------SALLFLPQRPYLPQGTLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAER--- 505 (604)
T ss_pred ----------------------CceEEecCCCCCCCccHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHH---
Confidence 1123457777766667788888765421 2345677788999999862200
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~ 297 (361)
+|+. ++=-..||+|||||+++||.| ||.|++||+ +.|||-|.| ..+.
T Consensus 506 -----l~~~---~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 506 -----LDEE---DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred -----Hhcc---CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 1111 111225999999999999998 999999763 899999999 6666
Q ss_pred cccchh
Q 018083 298 SLTDRA 303 (361)
Q Consensus 298 ~~aDri 303 (361)
.+.++.
T Consensus 578 ~~h~~~ 583 (604)
T COG4178 578 NFHSRQ 583 (604)
T ss_pred HHHhhh
Confidence 666665
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.80 E-value=1e-20 Score=174.32 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=99.8
Q ss_pred ccccccceeeecCcceeeccccceeccCCCC-CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc-cccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~-~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G-~~i~~ 162 (361)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++.+.+ +..+....+. .+..
T Consensus 5 ~i~l~nf~-~y~~~---------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g----~~~~~~~~~~~~~~~- 69 (213)
T cd03279 5 KLELKNFG-PFREE---------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG----KTPRYGRQENLRSVF- 69 (213)
T ss_pred EEEEECCc-CcCCc---------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec----CccccccchhHHHHh-
Confidence 37788887 66442 22777654 5899999999999999999999964421 3334333320 0000
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
........++++||+... .+........+.....+.+ .++..++.+
T Consensus 70 ----------------~~~~~~~~v~~~f~~~~~---------~~~~~r~~gl~~~~~~~~~--~l~~g~l~~------- 115 (213)
T cd03279 70 ----------------APGEDTAEVSFTFQLGGK---------KYRVERSRGLDYDQFTRIV--LLPQGEFDR------- 115 (213)
T ss_pred ----------------cCCCccEEEEEEEEECCe---------EEEEEEecCCCHHHHHHhh--hhhhcchHH-------
Confidence 000111123334444311 0000001111111111111 233444444
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc-------------------CCCceeecC----------------Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------------DEPt~~L~~----------------g~t 287 (361)
++++++.+||+||+||++||||| |||++++|. +.|
T Consensus 116 ----------~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 116 ----------FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185 (213)
T ss_pred ----------HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 45888999999999999998854 899999642 789
Q ss_pred EEEEEc--CccccccchhhHhhhhhh
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
||+||| ..+..+||++. ++++|.
T Consensus 186 ii~itH~~~~~~~~~~~i~-~~~~~~ 210 (213)
T cd03279 186 VGVISHVEELKERIPQRLE-VIKTPG 210 (213)
T ss_pred EEEEECchHHHHhhCcEEE-EEecCC
Confidence 999999 56778899996 488774
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=8.9e-21 Score=192.72 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=144.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..+.+++++++..- . ++|+||++++||+++|.|--|||+|-|+++|.|+.+ +.+|+|.++|+++.
T Consensus 260 ~~~~l~v~~l~~~~-------~---~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~v~ 324 (500)
T COG1129 260 GEPVLEVRNLSGGG-------K---VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKPVR 324 (500)
T ss_pred CCcEEEEecCCCCC-------c---eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEEcc
Confidence 34567888887542 1 667999999999999999999999999999999888 89999999999876
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHH-HHHhcccccee-EE--e-cCCChhhhhhhcccccccCC
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKL-WIMEGVRHGEL-VI--R-RSDSSSLRNRMRCKAHKIGC 233 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~-ti~~ni~~~~~-~~--~-~~~~~~~~~~v~~~l~~~gl 233 (361)
... .-......++||++|-. ++.. +|.+|+.++.. .. + ..+....++.+.++.+.+++
T Consensus 325 ~~s--------------p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~I 390 (500)
T COG1129 325 IRS--------------PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI 390 (500)
T ss_pred CCC--------------HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCc
Confidence 211 01112224555655432 3333 77888877622 11 1 24455556667778888888
Q ss_pred CcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccE
Q 018083 234 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPV 288 (361)
Q Consensus 234 ~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tv 288 (361)
...- .+....+||||-||++.|||.| ||||.|+| +|++|
T Consensus 391 k~~s----------------~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ai 454 (500)
T COG1129 391 KTPS----------------PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454 (500)
T ss_pred ccCC----------------ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEE
Confidence 6421 2788999999999999999999 99999953 39999
Q ss_pred EEEEc--CccccccchhhHhhhhhhhcCCCCcc
Q 018083 289 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 289 IiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
||||- .++..+||||+ ||++|++++.-+.+
T Consensus 455 l~iSSElpEll~~~DRIl-Vm~~Gri~~e~~~~ 486 (500)
T COG1129 455 LMISSELPELLGLSDRIL-VMREGRIVGELDRE 486 (500)
T ss_pred EEEeCChHHHHhhCCEEE-EEECCEEEEEeccc
Confidence 99999 68889999996 69999998854443
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.78 E-value=5e-20 Score=172.09 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=44.6
Q ss_pred hhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
.+.++.+||||||||++||||| |||+++||+ +++||++|| .++..+||+++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 3678899999999999999975 899999653 678888888 67778999995
Q ss_pred Hhhh
Q 018083 305 IRTY 308 (361)
Q Consensus 305 vvl~ 308 (361)
+ |.
T Consensus 232 ~-l~ 234 (243)
T cd03272 232 G-VK 234 (243)
T ss_pred E-EE
Confidence 4 54
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=6.9e-20 Score=185.01 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=129.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|.+.++|++|.|.++.++ +++++|-|..++.+++|||||||||||+|++.|.+. |+.|.|.-.-...-
T Consensus 386 p~pvi~~~nv~F~y~~~~~i-----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~~~ 455 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMI-----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHNKL 455 (614)
T ss_pred CCCeEEEeccccCCCCcchh-----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccccc
Confidence 34679999999999876544 777999999999999999999999999999999999 99998875432211
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchH---HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN---MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~---l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+ +-.|+.. .+..+..+++.--+ .+....+.++.++.++||..+.
T Consensus 456 ----------~----------------~y~Qh~~e~ldl~~s~le~~~~~~------~~~~~~e~~r~ilgrfgLtgd~- 502 (614)
T KOG0927|consen 456 ----------P----------------RYNQHLAEQLDLDKSSLEFMMPKF------PDEKELEEMRSILGRFGLTGDA- 502 (614)
T ss_pred ----------h----------------hhhhhhHhhcCcchhHHHHHHHhc------cccchHHHHHHHHHHhCCCccc-
Confidence 0 0011110 01112223332111 1134457788899999998643
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--C
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--G 294 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~ 294 (361)
...+..+||+|||.||+.|+++ ||||++||- .-+||++|| .
T Consensus 503 ---------------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 503 ---------------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFR 567 (614)
T ss_pred ---------------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhh
Confidence 3678899999999999999997 999999762 457999999 4
Q ss_pred ccccccchhhHhhhhhhhc-CCCCc
Q 018083 295 DLLSLTDRARIRTYLGELL-GIPPA 318 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv-~~g~~ 318 (361)
.+.+++++|++ ..+|.+. ..|..
T Consensus 568 lI~qVaeEi~~-c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 568 LISQVAEEIWV-CENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHHHhHh-hccCceeecCccH
Confidence 67799999975 6666553 34433
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=4.3e-20 Score=170.56 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred hhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
.++++..||+|||||++||||+ |||+++||+ +.|+|++|| ..+.++|||+.
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~ 200 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLV 200 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEE
Confidence 4778889999999999999844 999999753 678999999 77889999995
Q ss_pred Hhhhh
Q 018083 305 IRTYL 309 (361)
Q Consensus 305 vvl~~ 309 (361)
+|..
T Consensus 201 -~~~~ 204 (212)
T cd03274 201 -GIYK 204 (212)
T ss_pred -EEEe
Confidence 4653
No 381
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=6.4e-19 Score=179.20 Aligned_cols=186 Identities=16% Similarity=0.052 Sum_probs=131.5
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
..|++++|++.-+..+. .. ++++||+|+.|+.+.|.||||||||+|+|.|+|+.+ ..+|.+..-.....
T Consensus 432 n~i~~e~v~l~tPt~g~-~l---ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~~~-- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGD-LL---IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDGGP-- 500 (659)
T ss_pred ceEEeeeeeecCCCCCc-ee---eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccCCC--
Confidence 47999999999876332 34 566999999999999999999999999999999998 78998875432211
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
+..-|+||.|.+...|+++.|.++........+....+++.+.|+.++|.+-+.+ ...
T Consensus 501 ---------------------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~gg 558 (659)
T KOG0060|consen 501 ---------------------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGG 558 (659)
T ss_pred ---------------------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCC
Confidence 1234578888877778999999886533222233445566677777776651100 000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc-Ccccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-~~~~~~a 300 (361)
+. .. +-..=...||+||+||+++||.+ ||-|++++. |+|.|-|.| ..+.++-
T Consensus 559 ld----~~-~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 559 LD----QQ-VDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred CC----ch-hhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 00 00 00112235999999999999998 999999652 999999999 6777777
Q ss_pred chhhHhhh
Q 018083 301 DRARIRTY 308 (361)
Q Consensus 301 Dri~vvl~ 308 (361)
|.+. .|+
T Consensus 634 d~~L-~~~ 640 (659)
T KOG0060|consen 634 DYVL-RMD 640 (659)
T ss_pred hEEE-Eec
Confidence 7773 354
No 382
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=5.5e-19 Score=166.40 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=42.6
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-Cccccccchhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
..++.+||+|||||++||+|+ |||+++|+. |.+||+||| ......||+++
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 344589999999999999975 999999642 789999999 55668899996
Q ss_pred H
Q 018083 305 I 305 (361)
Q Consensus 305 v 305 (361)
+
T Consensus 230 ~ 230 (247)
T cd03275 230 G 230 (247)
T ss_pred E
Confidence 5
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=6.2e-19 Score=192.37 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=73.0
Q ss_pred cccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC--------
Q 018083 225 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD-------- 284 (361)
Q Consensus 225 ~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~-------- 284 (361)
.++++.++|... .+++.+.+|||||+||++||++| |||+++|+.
T Consensus 811 l~~L~~vgL~~l----------------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~ 874 (943)
T PRK00349 811 LQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE 874 (943)
T ss_pred HHHHHHCCCCcc----------------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH
Confidence 456777788642 24788999999999999999988 999999642
Q ss_pred --------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCCCCCCCCchh
Q 018083 285 --------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 285 --------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
|.|||+||| .+....||+++ .| ++|++++.|++++++..+. +++..++
T Consensus 875 ~L~~l~~~G~TVIiitH~~~~i~~aD~ii-~Lgp~~G~~~G~Iv~~Gt~~el~~~~~-s~t~~~l 937 (943)
T PRK00349 875 VLHRLVDKGNTVVVIEHNLDVIKTADWII-DLGPEGGDGGGEIVATGTPEEVAKVEA-SYTGRYL 937 (943)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCHHHHHhCcc-cHHHHHH
Confidence 899999999 33446799995 59 7999999999999988765 4444443
No 384
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=9.4e-19 Score=175.66 Aligned_cols=198 Identities=17% Similarity=0.215 Sum_probs=146.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|++++|+..-..+ .++ +++|||+|++||+++|.|=.|-|-+-|+.+|+|+.+ +.+|.|.++|+++.
T Consensus 254 g~~vL~V~~L~v~~~~~--~~~---v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~v~ 323 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG--VTA---VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKDVL 323 (501)
T ss_pred CCeEEEEeeeEeecCCC--Cce---eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEecc
Confidence 44589999999875433 356 555999999999999999999999999999999998 88899999999861
Q ss_pred cceEeEeeeecCCCcceeeeec-CCCCcccccchH---HHHH-HHHhccccceeE------EecCCChhhhhhhcccccc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNIN---MIKL-WIMEGVRHGELV------IRRSDSSSLRNRMRCKAHK 230 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~---l~~~-ti~~ni~~~~~~------~~~~~~~~~~~~v~~~l~~ 230 (361)
.. ...... ...+++||++-. +.+. ++.+|+.+.... .+..+..+..+.+.++++.
T Consensus 324 ~~--------------~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~ 389 (501)
T COG3845 324 GR--------------LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEE 389 (501)
T ss_pred cc--------------CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHH
Confidence 00 011111 122344444431 1122 555665554321 1224456777788888888
Q ss_pred cCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CC
Q 018083 231 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DD 285 (361)
Q Consensus 231 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g 285 (361)
+++...- ...+...||||.+||+.+||-| ..||-||| .|
T Consensus 390 fdVr~~~----------------~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G 453 (501)
T COG3845 390 FDVRAPS----------------PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453 (501)
T ss_pred cCccCCC----------------CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC
Confidence 8886311 2567889999999999999998 78888864 29
Q ss_pred ccEEEEEc--CccccccchhhHhhhhhhhcCCCCccc
Q 018083 286 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
+.||+|+- +++..+||||+ ||++|+++...++++
T Consensus 454 ~AVLLiS~dLDEil~lsDrIa-Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 454 KAVLLISEDLDEILELSDRIA-VIYEGRIVGIVPPEE 489 (501)
T ss_pred CEEEEEehhHHHHHHhhheee-eeeCCceeccccccc
Confidence 99999999 78999999997 599999999877754
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.71 E-value=6.6e-19 Score=200.16 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred hhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-
Q 018083 218 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD- 284 (361)
Q Consensus 218 ~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~- 284 (361)
+...+++ ++++.++|... .+++.+.+|||||+||++||||| ||||++|+.
T Consensus 784 ~~i~~~l-~~L~~vGL~~l----------------~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~ 846 (1809)
T PRK00635 784 PSIHEKI-HALCSLGLDYL----------------PLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTH 846 (1809)
T ss_pred HHHHHHH-HHHHHcCCcch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHH
Confidence 3455556 47888899762 14889999999999999999998 999999752
Q ss_pred ---------------CccEEEEEc--CccccccchhhHhhh------hhhhcCCCCcccccc
Q 018083 285 ---------------DKPVVVVTH--GDLLSLTDRARIRTY------LGELLGIPPAKQIFD 323 (361)
Q Consensus 285 ---------------g~tvIiiTH--~~~~~~aDri~vvl~------~G~iv~~g~~~~i~~ 323 (361)
|.|||+||| +.+ .+||+++ +|. .|+++..|++++++.
T Consensus 847 ~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi-~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 847 DIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVL-ELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEE-EEccCCCCCCCEEEEeCCHHHHHh
Confidence 889999999 444 8999995 585 789999999998875
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.71 E-value=2e-18 Score=174.47 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=127.3
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee--cccccCc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i--~G~~i~~ 162 (361)
-+.+.|+++.|.+. .. ++|+.|++.+|+.++|+|||||||||+|++|.|-.. |..-.+.+ ..+++..
T Consensus 75 dvk~~sls~s~~g~---~l---~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-----P~p~~~d~y~ls~e~~p 143 (614)
T KOG0927|consen 75 DVKIESLSLSFHGV---EL---IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-----PIPEHIDFYLLSREIEP 143 (614)
T ss_pred cceeeeeeeccCCc---ee---eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-----CCCcccchhhhcccCCC
Confidence 58999999999764 45 677999999999999999999999999999999988 65443322 2222110
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccc------------eeEEecCCChhhhhhhcccccc
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHK 230 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~------------~~~~~~~~~~~~~~~v~~~l~~ 230 (361)
... -.++. .+-.+.+...-+. ...+.+... .......+.+....++..+|.-
T Consensus 144 ----s~~--------~av~~---v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~g 207 (614)
T KOG0927|consen 144 ----SEK--------QAVQA---VVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHG 207 (614)
T ss_pred ----chH--------HHHHH---HhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHh
Confidence 000 00000 0000000000000 000111100 0000012334455666677778
Q ss_pred cCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------Cc-c
Q 018083 231 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DK-P 287 (361)
Q Consensus 231 ~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~-t 287 (361)
+|+.+. ..++....||||||.|+++|||| ||||++||. +. +
T Consensus 208 lgf~~~----------------m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~ 271 (614)
T KOG0927|consen 208 LGFLSE----------------MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRII 271 (614)
T ss_pred cCCCHh----------------HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCce
Confidence 887764 35888999999999999999998 999999762 55 8
Q ss_pred EEEEEc--CccccccchhhHhhhhhh-hcCCCCccccccC
Q 018083 288 VVVVTH--GDLLSLTDRARIRTYLGE-LLGIPPAKQIFDI 324 (361)
Q Consensus 288 vIiiTH--~~~~~~aDri~vvl~~G~-iv~~g~~~~i~~~ 324 (361)
+++++| +.+-.+|..|+ -++.++ +...|+.++....
T Consensus 272 lVi~sh~QDfln~vCT~Ii-~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 272 LVIVSHSQDFLNGVCTNII-HLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred EEEEecchhhhhhHhhhhh-eecccceeeecCCHHHHhhH
Confidence 999999 77889999995 599999 5667877766543
No 387
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=3.5e-18 Score=186.95 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=136.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceee
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.+. |+||+=-++||..+||+|+||||||||+++|+|-...+ ..+|+|.++|.+...
T Consensus 804 ~qL---L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~q------------------ 859 (1391)
T KOG0065|consen 804 RQL---LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKDQ------------------ 859 (1391)
T ss_pred eEh---hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCch------------------
Confidence 456 55599999999999999999999999999999986544 578999999977641
Q ss_pred eecCCCCcccccchHHHHH-HHHhccccceeEE--ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhc
Q 018083 181 YDTRSLSDDASDNINMIKL-WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 257 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~ 257 (361)
....+.+|||.|+..-.+. ||+|-+.++...+ ...+.++..+.++++++.++|++-. ..+-..+
T Consensus 860 ~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------------daiVG~~ 926 (1391)
T KOG0065|consen 860 ETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------------DALVGLP 926 (1391)
T ss_pred hhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------------hhhccCC
Confidence 1234567888776543344 8999888865432 2233445557888999999998621 0022334
Q ss_pred cCCchhhhhhhhhhhhcc----------CCCceeecC----------------CccEEEEEc---CccccccchhhHhhh
Q 018083 258 EGDSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH---GDLLSLTDRARIRTY 308 (361)
Q Consensus 258 ~~~LSGGqrQRvaIArAL----------DEPt~~L~~----------------g~tvIiiTH---~~~~~~aDri~vvl~ 308 (361)
...||..||+|+.||=-| ||||+|||. |.|||..-| .++.+..|++++ |+
T Consensus 927 G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL-Lk 1005 (1391)
T KOG0065|consen 927 GSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL-LK 1005 (1391)
T ss_pred CCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH-Hh
Confidence 455999999999999777 999999863 999999999 366788999975 65
Q ss_pred -hhhhcCCCCccc
Q 018083 309 -LGELLGIPPAKQ 320 (361)
Q Consensus 309 -~G~iv~~g~~~~ 320 (361)
.|+.|..|+.-+
T Consensus 1006 rGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1006 RGGQTVYFGPLGE 1018 (1391)
T ss_pred cCCeEEEecCccc
Confidence 577888876643
No 388
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.67 E-value=4.1e-18 Score=156.38 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=43.0
Q ss_pred hhhccCCchhhhhhh------hhhhhcc---------CCCceeecC------------------CccEEEEEc-Cccccc
Q 018083 254 LKSMEGDSDVEKQYN------QIVATTF---------NCPYLSFRD------------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 254 ~~~~~~~LSGGqrQR------vaIArAL---------DEPt~~L~~------------------g~tvIiiTH-~~~~~~ 299 (361)
+++.+..||+||+|| ++||||+ |||+++||. +.|||++|| ......
T Consensus 109 ~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 109 LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 366788999999996 6788887 999999642 579999999 445567
Q ss_pred cchhhHhhh
Q 018083 300 TDRARIRTY 308 (361)
Q Consensus 300 aDri~vvl~ 308 (361)
||+++. |.
T Consensus 189 ~d~i~~-l~ 196 (204)
T cd03240 189 ADHIYR-VE 196 (204)
T ss_pred CCEEEE-Ee
Confidence 999964 54
No 389
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.67 E-value=4.2e-17 Score=148.28 Aligned_cols=190 Identities=12% Similarity=0.061 Sum_probs=123.8
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
...|++.++.|.|+...++ +-|+|+++|.|....+||.||||||||+|+|+|-.- .-.|.|.+.|.+.--
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCccc
Confidence 4469999999999866544 777999999999999999999999999999999665 556899999876410
Q ss_pred ceEeEeeeecCC-CcceeeeecCCCCcc---cccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRG-SNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~-~~~~~~~d~r~~i~~---v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
...+..+ ...|---++....++ ||=.-.+ ++ +.+.++.. +. .. ++-+.+.+.+.++-
T Consensus 81 -----Dt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~---sa-e~mifgV~---g~-dp---~Rre~LI~iLDIdl--- 141 (291)
T KOG2355|consen 81 -----DTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDI---SA-EHMIFGVG---GD-DP---ERREKLIDILDIDL--- 141 (291)
T ss_pred -----cccccccCceeEecccccccccccccccccccc---cH-HHHHhhcc---CC-Ch---hHhhhhhhheeccc---
Confidence 0000000 000111111111111 1111111 11 11122211 11 12 33444555555543
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-----------------CCccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------DDKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-----------------~g~tvIiiT 292 (361)
.-+.+.+|-|||+||.||..| ||-|--|| .|.||++.|
T Consensus 142 ----------------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYAT 205 (291)
T KOG2355|consen 142 ----------------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYAT 205 (291)
T ss_pred ----------------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEe
Confidence 446788999999999999998 88776643 299999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPA 318 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~ 318 (361)
| +-++.++.+++ .+..|+++..-+.
T Consensus 206 HIFDGLe~Wpthl~-yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 206 HIFDGLETWPTHLV-YIKSGKLVDNLKY 232 (291)
T ss_pred eeccchhhcchhEE-EecCCeeeecccc
Confidence 9 77889999996 4999999874433
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.66 E-value=1.7e-17 Score=165.16 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=104.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+++...+++.|++-. .++=.| +|..||+++++||||-|||||+++|+|.++ |++|. ..++...|
T Consensus 342 lv~y~~~~k~~g~F~-L~V~~G------~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~vSy 405 (591)
T COG1245 342 LVEYPDLKKTYGDFK-LEVEEG------EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLKVSY 405 (591)
T ss_pred eeecchheeecCceE-EEecCC------eeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----CccceEee
Confidence 455566666666432 223333 788899999999999999999999999999 99998 34444333
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.+|.. ..+ .-+.|.|- +........ ..+. -..++++-+.|++
T Consensus 406 KPQyI----------~~~---~~gtV~~~---l~~~~~~~~----------~~s~---~~~ei~~pl~l~~--------- 447 (591)
T COG1245 406 KPQYI----------SPD---YDGTVEDL---LRSAIRSAF----------GSSY---FKTEIVKPLNLED--------- 447 (591)
T ss_pred cceee----------cCC---CCCcHHHH---HHHhhhhhc----------ccch---hHHhhcCccchHH---------
Confidence 33221 111 11112221 111110000 0111 1223566677777
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcC--cc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG--DL 296 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~--~~ 296 (361)
+++++..+||||+.||+|||.|| |||.+-||- ++|.++|.|+ .+
T Consensus 448 --------i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~ 519 (591)
T COG1245 448 --------LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519 (591)
T ss_pred --------HHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehh
Confidence 67999999999999999999999 999998752 8999999994 44
Q ss_pred ccccchhh
Q 018083 297 LSLTDRAR 304 (361)
Q Consensus 297 ~~~aDri~ 304 (361)
--++||++
T Consensus 520 dyvsDr~i 527 (591)
T COG1245 520 DYVSDRLI 527 (591)
T ss_pred hhhhceEE
Confidence 46789994
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.1e-17 Score=182.25 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=65.5
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~------- 284 (361)
..++++.+||... .+++.+.+|||||+||++||++| |||+++|+.
T Consensus 808 ~l~~L~~~gL~~l----------------~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~ 871 (924)
T TIGR00630 808 KLQTLCDVGLGYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL 871 (924)
T ss_pred HHHHHHHcCCCch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 3456777888642 24788999999999999999987 999999652
Q ss_pred ---------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCcccc
Q 018083 285 ---------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQI 321 (361)
Q Consensus 285 ---------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i 321 (361)
|.|||++|| ......||+++ +| ++|++++.|+++++
T Consensus 872 ~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii-~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 872 EVLQRLVDQGNTVVVIEHNLDVIKTADYII-DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EecCCccCCCCEEEEeCCHHHh
Confidence 899999999 33446799995 59 79999999988764
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.3e-17 Score=163.50 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=114.0
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|.+.++++.|+++ .. |.+-++++..|..++|+|+||+|||||+|+|+. |+|.....+-
T Consensus 81 i~~~~fdLa~G~k---~L---L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----------~~v~~f~veq----- 138 (582)
T KOG0062|consen 81 IHIDNFDLAYGGK---IL---LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----------GQVSGFHVEQ----- 138 (582)
T ss_pred eeeeeeeeeecch---hh---hcCCceeeecccccceeCCCCCcHHHHHHHHHh-----------cCcCccCchh-----
Confidence 6778899999864 34 666999999999999999999999999999876 3332222110
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcc-cccccCCCcceeEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC-KAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~-~l~~~gl~~~~~~~~~~~ 244 (361)
+.++..-..-|.......++.+-+...... ......+++.. +|.-+|+.++.
T Consensus 139 ----------------E~~g~~t~~~~~~l~~D~~~~dfl~~e~~l----~~~~~l~ei~~~~L~glGFt~em------- 191 (582)
T KOG0062|consen 139 ----------------EVRGDDTEALQSVLESDTERLDFLAEEKEL----LAGLTLEEIYDKILAGLGFTPEM------- 191 (582)
T ss_pred ----------------heeccchHHHhhhhhccHHHHHHHHhhhhh----hccchHHHHHHHHHHhCCCCHHH-------
Confidence 000000000000000000111111100000 00001122333 78899998864
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLT 300 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~~a 300 (361)
..++..+||||-|-|+++|||| ||||.-||- ..|+|+||| ..+-..|
T Consensus 192 ---------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 192 ---------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred ---------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHH
Confidence 4678889999999999999998 999998752 789999999 5777889
Q ss_pred chhhHhhhhhhh-cCCCCccccccC
Q 018083 301 DRARIRTYLGEL-LGIPPAKQIFDI 324 (361)
Q Consensus 301 Dri~vvl~~G~i-v~~g~~~~i~~~ 324 (361)
..| |.++.-++ ...|.-+++...
T Consensus 263 tdI-IH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 263 TDI-IHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHH-HHHhhhhhhhhcCcHHHHHHh
Confidence 888 44766555 345766665543
No 393
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.62 E-value=4.8e-17 Score=164.02 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=108.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceE
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 165 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~ 165 (361)
|.++|+-+--+.+. .+ ...++|+|++|-.+.|+||||||||+|+|+|.|+.+ ...|...+--
T Consensus 482 I~lenIpvItP~~~--vv---v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P~-------- 543 (728)
T KOG0064|consen 482 IILENIPVITPAGD--VL---VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIPR-------- 543 (728)
T ss_pred eEEecCceeccCcc--ee---ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecCC--------
Confidence 55666666555543 24 445999999999999999999999999999999998 6555444311
Q ss_pred eEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 166 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 166 ~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
...+-|+||.|.+-..+..|.|-++...-...++.-.++..+.+|..+.|+.-+-+.. ...
T Consensus 544 ------------------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~-g~d 604 (728)
T KOG0064|consen 544 ------------------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREG-GWD 604 (728)
T ss_pred ------------------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhcc-Chh
Confidence 1124456666665544666666654321000011112233444555555543110000 000
Q ss_pred EEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-------------CCccEEEEEc-Cccccccch
Q 018083 246 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-------------DDKPVVVVTH-GDLLSLTDR 302 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-------------~g~tvIiiTH-~~~~~~aDr 302 (361)
....--..||||+|||+++||.+ ||-|++.. -|.++|-||| ..+-++-..
T Consensus 605 -------a~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ 677 (728)
T KOG0064|consen 605 -------AVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTH 677 (728)
T ss_pred -------hhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHH
Confidence 00111235999999999999998 99999843 2999999999 666666666
Q ss_pred h
Q 018083 303 A 303 (361)
Q Consensus 303 i 303 (361)
+
T Consensus 678 l 678 (728)
T KOG0064|consen 678 L 678 (728)
T ss_pred H
Confidence 6
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.61 E-value=1e-16 Score=146.47 Aligned_cols=147 Identities=10% Similarity=0.046 Sum_probs=86.8
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
++++++++.+| +.+|+||||||||||+.+|.-.+. .... ....|..... .+.. + .....
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~-~~~r~~~~~~-------~i~~---~----~~~~~ 70 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKAS-DTNRGSSLKD-------LIKD---G----ESSAK 70 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcc-cccccccHHH-------HhhC---C----CCeEE
Confidence 44578888888 789999999999999999986554 1111 0111111000 0000 0 00011
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
+.+++++..++. | ......++++.++++. .+ ..++++.+||+|||
T Consensus 71 i~~~~~~~~~~~-----~----------~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~lS~G~k 115 (198)
T cd03276 71 ITVTLKNQGLDA-----N----------PLCVLSQDMARSFLTS---NK-----------------AAVRDVKTLSGGER 115 (198)
T ss_pred EEEEEEcCCccC-----C----------cCCHHHHHHHHHHhcc---cc-----------------ccCCcccccChhHH
Confidence 222333322111 0 0011123456566666 33 24788999999999
Q ss_pred hhhhhhhcc-------------CCCceeecC-------------------CccEEEEEc--CccccccchhhHhhhhhh
Q 018083 267 YNQIVATTF-------------NCPYLSFRD-------------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 267 QRvaIArAL-------------DEPt~~L~~-------------------g~tvIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
||++||+|+ |||+++++. +.|||++|| +.+..+ |+|.| |..++
T Consensus 116 ~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~-~~~~~ 192 (198)
T cd03276 116 SFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV-FRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE-EEecC
Confidence 999999865 999999542 248999999 556664 99964 77643
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.6e-16 Score=160.08 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=128.0
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.|.+++.+++|.|.++.+ +. +.++++++.--..++++|+||+||||+++++.+-+. |.+|-+.+.+.-
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~---~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r~--- 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QW---RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPRL--- 427 (582)
T ss_pred CCeeEEEeeeccCCCcch-hh---hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeecccc---
Confidence 357999999999988763 44 666999999999999999999999999999999888 899988776421
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHH-HH--HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KL--WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~--ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.+++.+|.---+ .. ...+-.. .. -+...++.++..+..+|+..++
T Consensus 428 -----------------------ri~~f~Qhhvd~l~~~v~~vd~~~---~~----~pG~~~ee~r~hl~~~Gl~g~l-- 475 (582)
T KOG0062|consen 428 -----------------------RIKYFAQHHVDFLDKNVNAVDFME---KS----FPGKTEEEIRRHLGSFGLSGEL-- 475 (582)
T ss_pred -----------------------eecchhHhhhhHHHHHhHHHHHHH---Hh----CCCCCHHHHHHHHHhcCCCchh--
Confidence 122222221111 00 1001111 00 0122567778889999999865
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GD 295 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~ 295 (361)
+.+....||||||=||++|... ||||.-||. +-.||+||| ..
T Consensus 476 --------------a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~f 541 (582)
T KOG0062|consen 476 --------------ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEF 541 (582)
T ss_pred --------------hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHH
Confidence 3455889999999999999886 999999863 557999999 46
Q ss_pred cccccchhhHhhhhhhhcC
Q 018083 296 LLSLTDRARIRTYLGELLG 314 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~ 314 (361)
+...|+.+|+ .++|++..
T Consensus 542 i~~~c~E~Wv-ve~g~vt~ 559 (582)
T KOG0062|consen 542 ISSLCKELWV-VEDGKVTP 559 (582)
T ss_pred HhhcCceeEE-EcCCcEEe
Confidence 7789999985 99998865
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.59 E-value=3.3e-16 Score=143.01 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=51.5
Q ss_pred hhccCCchhhhhhhhhhhhcc--------CCCceeecC-----------------CccEEEEEc-CccccccchhhHhhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTY 308 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL--------DEPt~~L~~-----------------g~tvIiiTH-~~~~~~aDri~vvl~ 308 (361)
......+|+||+|+..|++++ |||+++++. +.|+|++|| ..+..+||++. +++
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~-~l~ 164 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKRE-GVE 164 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCC-CeE
Confidence 566778999999999999887 999999642 789999999 56678999995 599
Q ss_pred hhhhcCCC
Q 018083 309 LGELLGIP 316 (361)
Q Consensus 309 ~G~iv~~g 316 (361)
+|+++.++
T Consensus 165 ~g~l~~~~ 172 (200)
T cd03280 165 NASMEFDP 172 (200)
T ss_pred EEEEEEec
Confidence 99997653
No 397
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.56 E-value=3.6e-16 Score=171.34 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=139.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|+|+|.-+++|+.+.++||.|||||||+++++|-.+... -..|.|.+||.+... +.. ...
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e---------------~~~---~~~ 190 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKE---------------FVP---KKT 190 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccc---------------ccc---Cce
Confidence 666999999999999999999999999999999887544 346799999988752 111 222
Q ss_pred CcccccchHHHHH-HHHhccccceeEEec---CCChhhhh----hhcccccccCCCcceeEEEEEEEEEEechhhhhhcc
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRN----RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 258 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~----~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~ 258 (361)
++|..|+-..++. |+++-+.|...+... .++-+.++ ..+.+++.+|+.. |..++|+ +...
T Consensus 191 ~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VG-----nd~~ 258 (1391)
T KOG0065|consen 191 VAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH-------CADTLVG-----NDMV 258 (1391)
T ss_pred EEeccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh-------hccceec-----cccc
Confidence 3333333223333 444444444332221 11112222 3457889999975 4444444 4567
Q ss_pred CCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc---CccccccchhhHhhhh
Q 018083 259 GDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYL 309 (361)
Q Consensus 259 ~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH---~~~~~~aDri~vvl~~ 309 (361)
...|||||+|+.+|-++ ||+|.|||. +.|++++-| .+...+.|.|. +|.+
T Consensus 259 RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~-lL~e 337 (1391)
T KOG0065|consen 259 RGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI-LLSE 337 (1391)
T ss_pred ccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee-eeec
Confidence 78999999999999998 999999863 888888888 57888999996 5999
Q ss_pred hhhcCCCCcccccc--------CCCCCCCCchhhhhh
Q 018083 310 GELLGIPPAKQIFD--------IPESSDPENELIIVD 338 (361)
Q Consensus 310 G~iv~~g~~~~i~~--------~~~~~~~~~~~~~~~ 338 (361)
|+++..|+.+++.. .|....+++++..+.
T Consensus 338 G~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vt 374 (1391)
T KOG0065|consen 338 GYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVT 374 (1391)
T ss_pred cceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhh
Confidence 99999999988643 355555566655443
No 398
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.54 E-value=1.6e-15 Score=149.66 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=105.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcc---cccccccceeeecccccCcceEeEeeeecCCCcceeeeec
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN---DKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 183 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~---~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~ 183 (361)
|+|+||+|++|++++|+|+||||||||+++|+|.... +.|.|++|.|.+--..+. ..++. .+
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-------a~iPg---e~----- 463 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-------ALIPG---EY----- 463 (593)
T ss_pred eeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-------hccCc---cc-----
Confidence 5669999999999999999999999999999997653 346789998876432211 01110 00
Q ss_pred CCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchh
Q 018083 184 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 263 (361)
Q Consensus 184 r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSG 263 (361)
++.+-.-++.+++.. ....-..+.++|.++|+.+.+ +..+..++||-
T Consensus 464 ---------Ep~f~~~tilehl~s---------~tGD~~~AveILnraGlsDAv---------------lyRr~f~ELSt 510 (593)
T COG2401 464 ---------EPEFGEVTILEHLRS---------KTGDLNAAVEILNRAGLSDAV---------------LYRRKFSELST 510 (593)
T ss_pred ---------ccccCchhHHHHHhh---------ccCchhHHHHHHHhhccchhh---------------hhhccHhhcCc
Confidence 011111133333331 011112355678999998855 56788999999
Q ss_pred hhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cccccc-cchhhHhhhhhhhc
Q 018083 264 EKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL-TDRARIRTYLGELL 313 (361)
Q Consensus 264 GqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~-aDri~vvl~~G~iv 313 (361)
||+.|..||+++ ||-.+-||+ +.|++++|| +....+ -|++.+ +.-|+..
T Consensus 511 GQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~-vgYg~v~ 588 (593)
T COG2401 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLIL-VGYGKVP 588 (593)
T ss_pred chHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEE-eeccccc
Confidence 999999999999 555555543 999999999 444455 588843 5555543
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.50 E-value=3e-15 Score=149.24 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=108.5
Q ss_pred cceeeecCcceeeccccceeccC-CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 90 NKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 90 nl~~~Y~~~~~~~~l~~L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
++.-+|+.+. ++--.+ ..++|.+++|+||||-||||.+|+|+|-+. |.=|+-. |.|
T Consensus 79 e~vHRYg~Ng-------FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~~~pp~wdeVi~~FrG 146 (591)
T COG1245 79 EVVHRYGVNG-------FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRYEDPPSWDEVIKRFRG 146 (591)
T ss_pred cceeeccCCc-------eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCCCCCCCHHHHHHHhhh
Confidence 4667887654 333455 356799999999999999999999999999 6655321 111
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
..+. .|+. .+.+---....-+|-....|..+...+..-+. +...+-...++.+.++|..
T Consensus 147 tELq-~YF~------------~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk------~~de~g~~devve~l~L~n-- 205 (591)
T COG1245 147 TELQ-NYFK------------KLYEGELRAVHKPQYVDLIPKVVKGKVGELLK------KVDERGKFDEVVERLGLEN-- 205 (591)
T ss_pred hHHH-HHHH------------HHHcCCcceecchHHHHHHHHHhcchHHHHHH------hhhhcCcHHHHHHHhcchh--
Confidence 1110 0000 01111111112256666666544433332111 1111234566788889988
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec----------------CCccEEEEE
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVT 292 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~----------------~g~tvIiiT 292 (361)
++++..++||||+.||+|||.|+ |||++-|| ++++||+|.
T Consensus 206 ---------------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVE 270 (591)
T COG1245 206 ---------------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVE 270 (591)
T ss_pred ---------------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 67999999999999999999998 99999864 279999999
Q ss_pred cCcc--ccccchhhH
Q 018083 293 HGDL--LSLTDRARI 305 (361)
Q Consensus 293 H~~~--~~~aDri~v 305 (361)
|+.+ --++|-|.|
T Consensus 271 HDLavLD~lsD~vhI 285 (591)
T COG1245 271 HDLAVLDYLSDFVHI 285 (591)
T ss_pred chHHHHHHhhheeEE
Confidence 9543 356788853
No 400
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.1e-14 Score=144.64 Aligned_cols=154 Identities=13% Similarity=0.136 Sum_probs=104.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..|+|-+-+|+|.|++.. +. ++.++|-|.-...++||||||.|||||+++|.|-+. |+.|+..-+- .+.
T Consensus 583 ~PPvLGlH~VtFgy~gqk--pL---FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnh-rL~ 651 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQK--PL---FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNH-RLR 651 (807)
T ss_pred CCCeeecccccccCCCCC--ch---hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccc-eee
Confidence 446788999999997764 33 667999999999999999999999999999999999 9999876542 222
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcc-cccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~-v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
.+++.|.+. ..+ ..|.+..+.... | +.+ -+.++..|-.+||.+..
T Consensus 652 iG~FdQh~~----------------E~L~~Eetp~EyLqr~-----F------Nlp----yq~ARK~LG~fGL~sHA--- 697 (807)
T KOG0066|consen 652 IGWFDQHAN----------------EALNGEETPVEYLQRK-----F------NLP----YQEARKQLGTFGLASHA--- 697 (807)
T ss_pred eechhhhhH----------------HhhccccCHHHHHHHh-----c------CCC----hHHHHHHhhhhhhhhcc---
Confidence 222222110 000 122222222110 1 111 23444567778886521
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhc-c--------CCCceeecC-------------CccEEEEEc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT-F--------NCPYLSFRD-------------DKPVVVVTH 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA-L--------DEPt~~L~~-------------g~tvIiiTH 293 (361)
-.-.+..|||||+-||++|-. + ||||..|+- .-.||||||
T Consensus 698 -------------HTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsH 759 (807)
T KOG0066|consen 698 -------------HTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSH 759 (807)
T ss_pred -------------ceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEec
Confidence 023456899999999999864 3 999999752 557999999
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.42 E-value=8.3e-14 Score=146.74 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=68.3
Q ss_pred hhhccCCchhhhhhhhhhhhcc------------CCCceee----------------cCCccEEEEEc-Cccccccchhh
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF------------NCPYLSF----------------RDDKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L----------------~~g~tvIiiTH-~~~~~~aDri~ 304 (361)
+.++..+||||+.||+-+|.-| ||||.|| +.|.|||+|.| -++.+.||.|
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I- 894 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI- 894 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE-
Confidence 5889999999999999999988 9999995 34999999999 6888999999
Q ss_pred Hhh------hhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 305 IRT------YLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 305 vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+-| ..|+|++.|+|+++...+ .+++..++.
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~-~S~Tg~yLk 930 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK-ASYTGKYLK 930 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc-cchhHHHHH
Confidence 433 468999999999999876 567666554
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.40 E-value=1.4e-13 Score=127.25 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=28.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++++.+| +.+|+||||||||||+.+|.-.+-
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 33466777777 778999999999999999987775
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.37 E-value=9.7e-14 Score=158.55 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=74.1
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeec--------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFR-------- 283 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~-------- 283 (361)
..+.|..+||.-- .+.+...+|||||.||+-||.-| ||||.||+
T Consensus 1679 ~L~~L~~vGLgYl----------------~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll 1742 (1809)
T PRK00635 1679 PLQALIDNGLGYL----------------PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL 1742 (1809)
T ss_pred HHHHHHHcCCCee----------------eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 3456778888642 25899999999999999999887 99999964
Q ss_pred --------CCccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCCCCCCCCchh
Q 018083 284 --------DDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 284 --------~g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
.|.|||+|.| .++.+.||.| |-| +.|+|++.|+|+++...+. +++..++
T Consensus 1743 ~~l~~L~~~g~tvivieH~~~~i~~aD~i-idlgp~gG~~GG~iva~Gtp~~i~~~~~-S~t~~~l 1806 (1809)
T PRK00635 1743 VQLRTLVSLGHSVIYIDHDPALLKQADYL-IEMGPGSGKTGGKILFSGPPKDISASKD-SLLKTYM 1806 (1809)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHhCCEE-EEcCCCcccCCCEEEEEeCHHHHhhCCC-CcHHHHh
Confidence 3999999999 5777779999 444 4589999999999988764 4554443
No 404
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.32 E-value=6.8e-13 Score=109.91 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=60.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|++++|++++|++++|+||||||||||++++. +|++.++|.++. .+...+....
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~---------------~~~~~~~~~~ 58 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNV---------------EIREDSKDEL 58 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHH---------------HhhhhhcCCE
Confidence 56699999999999999999999999999975 478999998875 2222233444
Q ss_pred CcccccchHHHHHHHHhcccccee
Q 018083 187 SDDASDNINMIKLWIMEGVRHGEL 210 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~ 210 (361)
.++++|+ +|..++.+||.+...
T Consensus 59 ~~~~~q~--lf~~ti~~Ni~~~~~ 80 (107)
T cd00820 59 IGRNPEL--GLEIRLRLNIFLITK 80 (107)
T ss_pred EEEechh--cchhhHHhhceeeeE
Confidence 5667777 777899999998544
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.30 E-value=6.7e-13 Score=121.26 Aligned_cols=63 Identities=8% Similarity=-0.103 Sum_probs=45.2
Q ss_pred ccCCchhhhhhhhhhhhcc--------CCCceeecC-----------------CccEEEEEc-CccccccchhhHhhhhh
Q 018083 257 MEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 257 ~~~~LSGGqrQRvaIArAL--------DEPt~~L~~-----------------g~tvIiiTH-~~~~~~aDri~vvl~~G 310 (361)
..+.++.+++|...|+..+ |||++++++ +.++|++|| .++...|+++. .+..+
T Consensus 88 ~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~-~l~~~ 166 (202)
T cd03243 88 GRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVP-GVKNL 166 (202)
T ss_pred CceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCC-CeEEE
Confidence 3446777777776666543 888888542 789999999 56667788874 48888
Q ss_pred hhcCCCCccc
Q 018083 311 ELLGIPPAKQ 320 (361)
Q Consensus 311 ~iv~~g~~~~ 320 (361)
++...+...+
T Consensus 167 ~~~~~~~~~~ 176 (202)
T cd03243 167 HMEELITTGG 176 (202)
T ss_pred EEEEEecCCe
Confidence 8877765433
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=3.4e-13 Score=125.52 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=84.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
.+|++|+++++++++|.||||||||||+++|+-+.- ....|
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----la~~g----------------------------------- 60 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----MAQIG----------------------------------- 60 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----HHHhC-----------------------------------
Confidence 566999999999999999999999999999873211 00011
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
.+||.+... -..+.+++..+++.+. ....+|.|++
T Consensus 61 -~~vpa~~~~------------------------~~~~~~il~~~~l~d~--------------------~~~~lS~~~~ 95 (222)
T cd03285 61 -CFVPCDSAD------------------------IPIVDCILARVGASDS--------------------QLKGVSTFMA 95 (222)
T ss_pred -CCcCcccEE------------------------EeccceeEeeeccccc--------------------hhcCcChHHH
Confidence 012211100 0012234555666542 2456777777
Q ss_pred hhhhhhhcc-----------CCC---ceeec---------------CCccEEEEEc-CccccccchhhHhhhhhhhcCCC
Q 018083 267 YNQIVATTF-----------NCP---YLSFR---------------DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 267 QRvaIArAL-----------DEP---t~~L~---------------~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g 316 (361)
|+..+++++ ||| |+++| .+.++|++|| .++..+||++. .+++|++....
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~-~i~~g~~~~~~ 174 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVP-NVKNLHVTALT 174 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCC-CeEEEEEEEEE
Confidence 777777766 999 66632 2789999999 77888999995 58999987654
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=8.7e-13 Score=126.37 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=44.1
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-CccccccchhhH
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
......|||||+||++||+++ |||+++|+. +.|+|++|| ..+..+||++++
T Consensus 165 ~~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~ 244 (276)
T cd03241 165 KPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFL 244 (276)
T ss_pred chhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEE
Confidence 344456999999999999741 999999652 779999999 445688999964
Q ss_pred hhhhhhh
Q 018083 306 RTYLGEL 312 (361)
Q Consensus 306 vl~~G~i 312 (361)
+.++..
T Consensus 245 -l~~~~~ 250 (276)
T cd03241 245 -VEKEVE 250 (276)
T ss_pred -EEEecC
Confidence 777644
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.9e-13 Score=134.56 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=114.6
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh-hcccccccccceeeecccccCcce
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl-~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
|.++|.+++-.+. .. +-+.|+.|-.|..++||||||-|||||++-|+.- +. .|..=.|++..+.+-...
T Consensus 265 IKiEnF~ISA~Gk---~L---FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala----IPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 265 IKIENFDISAQGK---LL---FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA----IPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ceeeeeeeecccc---ee---eeccceEEEecceecccCCCCCchHHHHHHHHhhhcc----CCCCCceEeeeeeeeecC
Confidence 7788888886553 23 5669999999999999999999999999998642 22 133334444444331000
Q ss_pred EeEeeeecCCCcceeee-ecCCCCcccccchHHHHH------HHHhccccceeEEecCCChhhhhhhcccccccCCCcce
Q 018083 165 FLQEYTIPRGSNSFSLY-DTRSLSDDASDNINMIKL------WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 237 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~-d~r~~i~~v~q~~~l~~~------ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~ 237 (361)
...+ ...+. |.+ ...+..+...+... ++.+.+.....-.+.......+.+++.+|.-+|+..+.
T Consensus 335 ---t~Ai-----~tvl~aD~k-Rl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 335 ---TSAI-----DTVLKADKK-RLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred ---cHHH-----HHHHHhhHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH
Confidence 0000 00000 000 00111111111100 11111100000000112234456677788888988754
Q ss_pred eEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--
Q 018083 238 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-- 293 (361)
Q Consensus 238 ~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH-- 293 (361)
-+++...+|||-|.||++|||| ||||..|+- .+|++||+|
T Consensus 406 ----------------Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQ 469 (807)
T KOG0066|consen 406 ----------------QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQ 469 (807)
T ss_pred ----------------hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEeccc
Confidence 3567778999999999999998 899987641 789999999
Q ss_pred CccccccchhhHhhhhhhhcC
Q 018083 294 GDLLSLTDRARIRTYLGELLG 314 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~ 314 (361)
..+-..|..| |.+++-++-.
T Consensus 470 gFLD~VCtdI-IHLD~qkLhy 489 (807)
T KOG0066|consen 470 GFLDSVCTDI-IHLDNQKLHY 489 (807)
T ss_pred chHHHHHHHH-hhhhhhhhhh
Confidence 5777889988 4588777643
No 409
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.26 E-value=1.8e-12 Score=116.75 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=38.9
Q ss_pred chhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhh
Q 018083 261 SDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 308 (361)
Q Consensus 261 LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~ 308 (361)
||+||+||++|||++ |||+++++. +.|+|++|| ......||+++. ++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~-i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIG-VL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEE-EE
Confidence 999999999999974 999999653 689999999 445568999954 54
No 410
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.19 E-value=5.5e-12 Score=111.49 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=39.3
Q ss_pred Cchhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-CccccccchhhHhhhh
Q 018083 260 DSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYL 309 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~vvl~~ 309 (361)
+||+||+||++||++| |||+++++. +.++|++|| ......+|+++ .|+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~-~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI-HIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEE-EEEE
Confidence 4999999999999987 999988542 579999999 45556789985 3543
No 411
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.15 E-value=8.6e-12 Score=119.45 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=36.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++|+||||||||||+++|+|++. |++|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEee
Confidence 5789999999999999999999999 99999999998874
No 412
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.10 E-value=1.5e-11 Score=122.20 Aligned_cols=140 Identities=11% Similarity=0.135 Sum_probs=89.0
Q ss_pred eccCCCCCc-----eEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeecccccCcceEeEeeeecCCCcceeeee
Q 018083 109 LSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 182 (361)
Q Consensus 109 ~is~~I~~G-----e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d 182 (361)
+..|.|..| |++..+|+||.|||||+++++|.++ |++| +|-.... ++..+.
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-----pd~~~e~p~lnV------------------Sykpqk 410 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-----PDEGGEIPVLNV------------------SYKPQK 410 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-----CCccCcccccce------------------eccccc
Confidence 366666665 6789999999999999999999999 8766 2221111 111111
Q ss_pred cCCC-CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCc
Q 018083 183 TRSL-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 261 (361)
Q Consensus 183 ~r~~-i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~L 261 (361)
.+-. -+-|.| ++-..+++.-. ..+-+.+.++-+.++. ..++-...|
T Consensus 411 ispK~~~tvR~---ll~~kIr~ay~-------------~pqF~~dvmkpL~ie~-----------------i~dqevq~l 457 (592)
T KOG0063|consen 411 ISPKREGTVRQ---LLHTKIRDAYM-------------HPQFVNDVMKPLQIEN-----------------IIDQEVQGL 457 (592)
T ss_pred cCccccchHHH---HHHHHhHhhhc-------------CHHHHHhhhhhhhHHH-----------------HHhHHhhcC
Confidence 1111 111111 11111211111 1123334455566665 458888899
Q ss_pred hhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEcCc--cccccchhh
Q 018083 262 DVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHGD--LLSLTDRAR 304 (361)
Q Consensus 262 SGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH~~--~~~~aDri~ 304 (361)
|||++||+|||.+| |||.+-|+. ++|-.+|.|+. +.-+|||++
T Consensus 458 SggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 458 SGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred CchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeE
Confidence 99999999999999 999988652 88999999954 446799994
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=1.4e-11 Score=117.77 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++.++++.+| +.+|+|||||||||++.+|.-+..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhcc
Confidence 44477788887 788999999999999999977664
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.04 E-value=3.2e-11 Score=132.38 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=71.1
Q ss_pred hhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----
Q 018083 220 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 284 (361)
Q Consensus 220 ~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~---- 284 (361)
+.+++. +++.+||... .+++.+.+|||||+||++||+|| ||||++|++
T Consensus 466 i~~rl~-~L~~vGL~~l----------------~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~ 528 (943)
T PRK00349 466 IRERLK-FLVDVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDND 528 (943)
T ss_pred HHHHHH-HhhccccCCC----------------CCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHH
Confidence 344443 6888888751 15899999999999999999998 999999753
Q ss_pred ------------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|.|||+||| .+....||+|+ +| ++|+++..|+++++...+
T Consensus 529 ~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi-~LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 529 RLIETLKHLRDLGNTLIVVEHDEDTIRAADYIV-DIGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EeccccCCCCCEEeeccCHHHHhcCh
Confidence 899999999 23345699995 59 999999999998886543
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=4.8e-11 Score=130.80 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=61.3
Q ss_pred hhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----------------CccEEEEEc-CccccccchhhH
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+++.+.+|||||+||++||+|| ||||++|++ |.|||+|+| .+....||+++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi- 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVI- 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEE-
Confidence 4889999999999999999998 999999753 899999999 33445899995
Q ss_pred hh------hhhhhcCCCCccccccCC
Q 018083 306 RT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 306 vl------~~G~iv~~g~~~~i~~~~ 325 (361)
+| ++|+|++.|+++++...+
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~~ 585 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILANP 585 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcCc
Confidence 59 899999999998886543
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.01 E-value=2e-10 Score=105.67 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=33.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|++|++++|++++|+||||||||||+++|+++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666999999999999999999999999999998764
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.91 E-value=5.7e-10 Score=100.78 Aligned_cols=49 Identities=14% Similarity=-0.025 Sum_probs=37.3
Q ss_pred hhccCCchhhhhhhhhhhhcc--------CCCceeec------------------CCccEEEEEc-Cccccccchh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFR------------------DDKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL--------DEPt~~L~------------------~g~tvIiiTH-~~~~~~aDri 303 (361)
.+..+++|+|++|...+++.. |||+++++ .+.++|++|| .++..+||+.
T Consensus 56 ~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~ 131 (185)
T smart00534 56 AQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEH 131 (185)
T ss_pred hccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcC
Confidence 667788999999887777763 99998843 1678999999 5566667653
No 418
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.90 E-value=3.9e-10 Score=103.27 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++|+. |++++|+||||||||||+|+|++...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 45577776 69999999999999999999998663
No 419
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.88 E-value=6.3e-10 Score=113.24 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=43.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i~ 161 (361)
|++|||+|++||+++|+||||||||||++ +|+.. |++| +|.++|+++.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSF 70 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECC
Confidence 45599999999999999999999999999 67777 7777 7999999875
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.83 E-value=8.9e-10 Score=102.18 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|++|++.+ ++++|+||||||||||+|+|+++.-
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH
Confidence 5669999987 8999999999999999999987653
No 421
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.80 E-value=3.1e-09 Score=100.73 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|.+|+.++|+||+|+|||||++.|.+...
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4789999999999999999999999999887
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.79 E-value=3.4e-09 Score=114.84 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=28.8
Q ss_pred ccCCCCCc-eEEEEEccCCCCcchhhhhhhhh
Q 018083 110 SDYDVPKT-TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 110 is~~I~~G-e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+|+++..+ ++++|+||||+|||||+|+|+++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 68888877 89999999999999999999998
No 423
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.79 E-value=2.5e-09 Score=108.89 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=45.4
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+.++ +++ |.|.+|++++|+|+||+|||||+++|+++.+ ++.|.|.+.|++.
T Consensus 146 ~~vi---d~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Gerg 196 (438)
T PRK07721 146 VRAI---DSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGERG 196 (438)
T ss_pred hhhh---hee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecCC
Confidence 3564 449 9999999999999999999999999999999 8999999977654
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.77 E-value=7.4e-09 Score=95.27 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=33.4
Q ss_pred Cchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchhh
Q 018083 260 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 304 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~ 304 (361)
.||||||-+++||--| |||.++||+ +.-+|++|| ......||+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~ 209 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLI 209 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999665 888888653 578999999 66777788773
No 425
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=1.4e-08 Score=102.98 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=53.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.++-+.++..|..+ +.++ +.+ |.+.+|+.++|+|++|+|||||+++|++..+ ++.|.|.+.|+..
T Consensus 130 ~~~r~~i~~~l~TG--iraI---D~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGerg 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSI---DSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGERG 194 (432)
T ss_pred chheechhhccCCC--CEEE---ecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCCc
Confidence 46777787777654 4564 435 9999999999999999999999999999998 8889887777553
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.50 E-value=1.6e-08 Score=100.99 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=90.7
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee--cccccCcceEeEeeeecCCCcceeeeecCCCCcccc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 191 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i--~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~ 191 (361)
-++|+.+++||.||-||||-+++++|-++ |.-|.-.. +++.+. +++.- ..+...+.. .+.+... .-.-+
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~k-----pnlg~~~~pp~w~~il-~~frg-selq~yftk-~le~~lk-~~~kp 167 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRYDNPPDWQEIL-TYFRG-SELQNYFTK-ILEDNLK-AIIKP 167 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCC-----CCCCCCCCCcchHHHh-hhhhh-HHHhhhhhh-hcccccc-CcCCh
Confidence 35799999999999999999999999999 65553211 011110 11100 000000000 1111111 01124
Q ss_pred cchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhh
Q 018083 192 DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 271 (361)
Q Consensus 192 q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaI 271 (361)
|...-++..+..++.--+ .....++...++.+.+.|.. ++++-..+||||+.||.+|
T Consensus 168 Qyvd~ipr~~k~~v~~~l------~~~~~r~~~~~~~~~~~L~~-----------------~~~re~~~lsggelqrfai 224 (592)
T KOG0063|consen 168 QYVDQIPRAVKGTVGSLL------DRKDERDNKEEVCDQLDLNN-----------------LLDREVEQLSGGELQRFAI 224 (592)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHhhcccHHHHHHHHHHhh-----------------HHHhhhhhcccchhhhhhh
Confidence 444433332222221100 11122233445566677766 5688889999999999999
Q ss_pred hhcc---------CCCceeec----------------CCccEEEEEcC-ccc-cccchhhH
Q 018083 272 ATTF---------NCPYLSFR----------------DDKPVVVVTHG-DLL-SLTDRARI 305 (361)
Q Consensus 272 ArAL---------DEPt~~L~----------------~g~tvIiiTH~-~~~-~~aDri~v 305 (361)
|.+- |||.+.|| ++.-||+|.|+ .++ -++|-+.+
T Consensus 225 a~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc 285 (592)
T KOG0063|consen 225 AMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC 285 (592)
T ss_pred hhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE
Confidence 9986 99998854 37789999993 333 55677743
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.49 E-value=8.7e-08 Score=89.40 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=37.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh-hhcccccccccceee
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVT 154 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g-l~~~~~~~p~~G~I~ 154 (361)
..+++|++.+|++++|+||||+|||||+++|++ .+. +..|...
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v 64 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFV 64 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEE
Confidence 666999999999999999999999999999999 555 6667644
No 428
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.46 E-value=1e-07 Score=103.67 Aligned_cols=57 Identities=5% Similarity=-0.138 Sum_probs=42.1
Q ss_pred hhccCCchhhhhhhhhhhhcc--------CCCceeecC-----------------CccEEEEEc--CccccccchhhHhh
Q 018083 255 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRT 307 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL--------DEPt~~L~~-----------------g~tvIiiTH--~~~~~~aDri~vvl 307 (361)
.+..+++|+||+|++.|++++ |||++|+++ +.++|++|| +.+...+++.. +
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~--v 462 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG--V 462 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC--e
Confidence 567788999999999999986 999999542 789999999 33444456553 3
Q ss_pred hhhhhc
Q 018083 308 YLGELL 313 (361)
Q Consensus 308 ~~G~iv 313 (361)
.++.+.
T Consensus 463 ~~~~~~ 468 (782)
T PRK00409 463 ENASVE 468 (782)
T ss_pred EEEEEE
Confidence 344443
No 429
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=1.3e-07 Score=96.20 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=57.2
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
..+.++.++++..|..+ +.+++. ++ +|.+|++++|+||||||||||+++|+++.+ |+.|.|.+.|++
T Consensus 136 ~p~~~~r~~v~~~l~TG--i~aID~---L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGer 202 (450)
T PRK06002 136 APPAMTRARVETGLRTG--VRVIDI---FT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGER 202 (450)
T ss_pred CCCCeEeecceEEcCCC--cEEeee---ec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecccC
Confidence 44578999999999765 567555 75 999999999999999999999999999998 899998886543
No 430
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.45 E-value=4.2e-08 Score=104.29 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=64.2
Q ss_pred hhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----------------CccEEEEEc-CccccccchhhH
Q 018083 254 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+++...+||||+.||+-||.-+ |||..||.+ |.|+|+|.| .+....||+| |
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~i-I 553 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHI-I 553 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEE-E
Confidence 4788899999999999999988 999999753 999999999 6888999999 4
Q ss_pred h------hhhhhhcCCCCccccccCCC
Q 018083 306 R------TYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 306 v------l~~G~iv~~g~~~~i~~~~~ 326 (361)
- .+.|+|++.|++++++..++
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 3 46799999999999999875
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.41 E-value=9.2e-08 Score=86.35 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=40.0
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
+.+.+++|+.++|+||||||||||+++|+++++ |+.|.|.+.+
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied 60 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIED 60 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECC
Confidence 777899999999999999999999999999999 8889998865
No 432
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.40 E-value=1.5e-07 Score=94.54 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHhHHHHH---hhhccccccccceeeecCcceeeccccce-----------eccCCCCCceEEEEEccCCC
Q 018083 63 RRDAVFREVLQSYDQLR---TRIGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPKGS 128 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~---~~~~~~lei~nl~~~Y~~~~~~~~l~~L~-----------~is~~I~~Ge~vaLvGpnGS 128 (361)
+...|+.+++...+... .....-++++||++.|++.. .+ |+ |+.+.|.+|++++|+||+||
T Consensus 105 ~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er--~~---Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~ 179 (415)
T TIGR00767 105 KEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNER--LR---LETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKA 179 (415)
T ss_pred ccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCcc--ce---eecCccccceeeeeeEEEeCCCCEEEEECCCCC
Confidence 34559999997655421 22344699999999998654 34 54 69999999999999999999
Q ss_pred Ccchhhhhhhhhhc
Q 018083 129 GKSSLVNRISKVFE 142 (361)
Q Consensus 129 GKSTLl~~I~gl~~ 142 (361)
|||||++.|...+.
T Consensus 180 GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 180 GKTVLLQKIAQAIT 193 (415)
T ss_pred ChhHHHHHHHHhhc
Confidence 99999999999886
No 433
>PRK13695 putative NTPase; Provisional
Probab=98.39 E-value=1.1e-07 Score=84.59 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCccEEEEEc-CccccccchhhHhhhhhhhcCC
Q 018083 284 DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGI 315 (361)
Q Consensus 284 ~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~ 315 (361)
.+.++|+++| ..+..++|+|. .+.+|+|+..
T Consensus 125 ~~~~~i~v~h~~~~~~~~~~i~-~~~~~~i~~~ 156 (174)
T PRK13695 125 SEKPVIATLHRRSVHPFVQEIK-SRPGGRVYEL 156 (174)
T ss_pred CCCeEEEEECchhhHHHHHHHh-ccCCcEEEEE
Confidence 4789999999 56667899995 6999988665
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.34 E-value=2.2e-07 Score=90.60 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=38.2
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+++.+..|+.++|+||+|||||||+++|+++++ +..+.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEc
Confidence 677899999999999999999999999999998 888877774
No 435
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.22 E-value=3.4e-07 Score=93.27 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=40.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
+.++++ + |+|.+|++++|+|+||||||||+++|+++.+. .+.|.|.+.|+
T Consensus 152 i~aID~---~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGe 201 (442)
T PRK06315 152 VRCIDG---M-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGE 201 (442)
T ss_pred EEEEec---c-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECC
Confidence 567555 8 99999999999999999999999999998851 34466766553
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.22 E-value=1.2e-06 Score=81.22 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=23.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
++++=..+.+++|+||||+|||||+|.|..
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 444422237899999999999999999984
No 437
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.22 E-value=1.9e-07 Score=96.57 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=26.0
Q ss_pred CCCCceEEEEEccCCCCcchhhhhh--hhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I--~gl~~ 142 (361)
=+++|..+.|.||+|||||||...+ .|+.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~ 48 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH 48 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999876 45554
No 438
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.17 E-value=1.4e-06 Score=88.69 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=54.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.++.+.++..|..+ +.++++ + |+|.+|++++|+|+||+|||||+++|+++.. ++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~tG--i~aID~---l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG--IRAIDS---V-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC--ceeeee---e-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECCC
Confidence 357778888888544 567555 9 9999999999999999999999999999998 888888777764
No 439
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.16 E-value=9.1e-07 Score=79.73 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=29.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
|++++|+||||||||||+++|++.+. + .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~---~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----T---QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----C---eEEEcCEEC
Confidence 68999999999999999999999887 4 355555444
No 440
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.13 E-value=1e-06 Score=65.95 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=28.2
Q ss_pred ccCCCCC-ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~-Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++++.+ |.+++|.||||||||||+.+|.=++-
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 5566664 56999999999999999999988887
No 441
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.13 E-value=1.6e-06 Score=77.98 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+|++++|+||||||||||+++|++++. + +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcccC
Confidence 589999999999999999999999998 5 477776653
No 442
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.12 E-value=1.3e-06 Score=80.13 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=21.3
Q ss_pred EEEEEccCCCCcchhh-hhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLV-NRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl-~~I~gl~~ 142 (361)
.++|+|++|||||||+ +.+.|.+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999 57888775
No 443
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.12 E-value=1.6e-06 Score=79.49 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=27.4
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
=++|++++|+||||||||||+++|++++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999999999997
No 444
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.09 E-value=1.8e-06 Score=78.42 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999875
No 445
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.06 E-value=2.7e-06 Score=83.65 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=46.6
Q ss_pred ceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 91 KILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 91 l~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++..|..+ +.++++ + |.+.+|++++|+|+||+|||||+++|+++.. ++.|.+.+-|.+
T Consensus 49 ~~~~l~tG--i~aiD~---l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPTG--VRAIDG---L-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGER 106 (326)
T ss_pred ceeEcCCC--cEEEee---e-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecC
Confidence 33445433 467555 9 9999999999999999999999999999998 887877766644
No 446
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.05 E-value=2.6e-06 Score=86.72 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=35.1
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++++ + |+|.+|++++|+||||||||||+++|+|+.+
T Consensus 143 i~aID~---l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 143 VNAING---L-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeeccc---e-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 567555 9 9999999999999999999999999999998
No 447
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=4.6e-06 Score=75.68 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=30.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++|+. .|++++- ++.|+|.||||||||+.+|+-...
T Consensus 23 lPa~r~l~~-~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 23 LPAFRHLEE-RLEFRAP-ITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred chHHHhhhh-hccccCc-eEEEEcCCCccHHHHHHHHHhhcc
Confidence 466666552 4555553 889999999999999999976665
No 448
>PRK08149 ATP synthase SpaL; Validated
Probab=98.03 E-value=2.5e-06 Score=86.73 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=44.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc---ceeeecccccC
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 161 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i~ 161 (361)
+.+ ++++ ++|.+|++++|+|+||||||||+++|++... ++. |.|...|.++.
T Consensus 139 i~a---id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 139 VRA---IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVT 193 (428)
T ss_pred cEE---Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHH
Confidence 467 4449 9999999999999999999999999999988 554 88888887764
No 449
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.00 E-value=3.5e-06 Score=78.51 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
.+..+++|.||||||||||+++|+++++ +..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 4568999999999999999999999999 888883
No 450
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.99 E-value=3.6e-06 Score=87.27 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=54.1
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.+++..|+.. .+ ++.+++.+..|+.++|+||||||||||+++|.|+++ |.+|++.+....+.
T Consensus 187 ~~d~~~v~Gq~---~~---~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE---QG---KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH---HH---HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecchhh
Confidence 45788778653 45 445999999999999999999999999999999999 99999998887653
No 451
>PLN02796 D-glycerate 3-kinase
Probab=97.96 E-value=2.7e-06 Score=84.06 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=41.3
Q ss_pred ceeccCCC---CCceE-----EEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I---~~Ge~-----vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++.+++.+ ++|+. ++|+|++|||||||++.|.+++.... ...|.|.++|..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcccc
Confidence 44588887 56665 99999999999999999999998210 13688899886653
No 452
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.92 E-value=6.4e-06 Score=83.60 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=50.2
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++-+.++--+..+ +.+ ++ .+|+|.+|++++|+|+||+|||||+++|++..+ |+.|.|.+.|+..
T Consensus 115 ~~R~~i~~~l~tG--i~a---iD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer~ 178 (418)
T TIGR03498 115 MSRARVGEPLDTG--VRV---ID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGERG 178 (418)
T ss_pred hhccCcccccCCc--cEE---Ee-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeeec
Confidence 4444444444333 344 43 689999999999999999999999999999998 8899888888654
No 453
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.90 E-value=3.5e-06 Score=94.69 Aligned_cols=56 Identities=7% Similarity=0.031 Sum_probs=47.2
Q ss_pred hhhhccCCchhhhhhhhhhhhcc-------------------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL-------------------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
...+.+..|||||++|++||+|| |||+++||+ |++|+|||| ..
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 44778899999999999998875 999999764 889999999 56
Q ss_pred cccccchhhHhhhh
Q 018083 296 LLSLTDRARIRTYL 309 (361)
Q Consensus 296 ~~~~aDri~vvl~~ 309 (361)
...+||+|.| ++.
T Consensus 1023 ~~~~~~~i~v-~~~ 1035 (1042)
T TIGR00618 1023 RERIPHRILV-KKT 1035 (1042)
T ss_pred HHhhCCEEEE-EEC
Confidence 7789999964 654
No 454
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.90 E-value=7.7e-06 Score=82.93 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=52.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.++-+.++..|..+ +.+++. + |+|.+|++++|+|+||+|||||+++|+++.. ++.+.+...|++
T Consensus 110 ~~~~R~~~~~~~~tG--i~~id~---l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer 174 (411)
T TIGR03496 110 NPLKRAPIDEPLDVG--VRAING---L-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGER 174 (411)
T ss_pred CHHhccCcceEeeee--EEeecc---e-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecC
Confidence 345666677777544 567555 8 9999999999999999999999999999998 777766666654
No 455
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.89 E-value=3.3e-06 Score=88.87 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=43.1
Q ss_pred CCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-CccccccchhhHhhhh
Q 018083 259 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 309 (361)
Q Consensus 259 ~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~vvl~~ 309 (361)
..|||||+||++||+++ |||+++++. +.+||+||| ...+.+||+++ ++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~-~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHF-KVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEE-EEEE
Confidence 57999999999999875 999999642 899999999 44456899995 5888
Q ss_pred hh
Q 018083 310 GE 311 (361)
Q Consensus 310 G~ 311 (361)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 456
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.89 E-value=7.3e-06 Score=83.64 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=45.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+.++++ + |++.+|++++|+|+||+|||||+++|++... ++.|.+.+.|+..
T Consensus 151 i~~ID~---l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGer~ 201 (441)
T PRK09099 151 VRIVDG---L-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGERG 201 (441)
T ss_pred ceeccc---e-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccCh
Confidence 466555 9 9999999999999999999999999999998 8889888888653
No 457
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.89 E-value=9.3e-06 Score=82.64 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=44.4
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+.++++ + |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+.|.+.
T Consensus 133 ~~~id~---l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~~~ 183 (422)
T TIGR02546 133 VRAIDG---L-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGERG 183 (422)
T ss_pred ceeehh---h-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEccCC
Confidence 456444 9 9999999999999999999999999999998 8888888866543
No 458
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.89 E-value=8.4e-06 Score=83.32 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=43.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.++++ + |.|.+|++++|+|+||+|||||+++|++..+ ++.|.+...|..
T Consensus 151 i~~iD~---l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~r 200 (440)
T TIGR01026 151 VRSIDG---L-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGER 200 (440)
T ss_pred eeeeee---c-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEeec
Confidence 467444 8 9999999999999999999999999999998 887777666654
No 459
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.86 E-value=9.5e-06 Score=82.81 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=44.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc---ceeeecccccC
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 161 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~---G~I~i~G~~i~ 161 (361)
+.+++. + |+|.+|++++|+|+||+|||||+++|+++.+ ++. |.|.+.|.++.
T Consensus 163 iraID~---l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 163 VRAINA---L-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGREVK 217 (455)
T ss_pred ceeeee---c-ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeEHH
Confidence 455444 5 9999999999999999999999999999998 664 88888887764
No 460
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.85 E-value=8e-06 Score=82.84 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=48.4
Q ss_pred ceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 91 KILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 91 l~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++..|..+ +.++++ + |.+.+|++++|+|++|+|||||+++|++..+ ++.|.|.+.|++.
T Consensus 117 ~~~~~~tG--i~~iD~---l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger~ 175 (413)
T TIGR03497 117 IRDPLETG--IKAIDG---L-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGERG 175 (413)
T ss_pred hhhhcccc--ceeeee---E-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccch
Confidence 34445433 466444 9 9999999999999999999999999999998 8889888888654
No 461
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.85 E-value=1.1e-05 Score=80.35 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=26.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999985
No 462
>PRK01889 GTPase RsgA; Reviewed
Probab=97.84 E-value=6.1e-06 Score=82.21 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=42.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++.+.-.+++|++++|+|+||+|||||+|+|+|... +..|+|.+++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~ 232 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSK 232 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCC
Confidence 444666788999999999999999999999999999 999999988644
No 463
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.82 E-value=7.9e-06 Score=72.65 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=36.4
Q ss_pred hhccCCchhhhhh-----hhhhhhcc----------CCCceeec-------------------CCccEEEEEc--Cc---
Q 018083 255 KSMEGDSDVEKQY-----NQIVATTF----------NCPYLSFR-------------------DDKPVVVVTH--GD--- 295 (361)
Q Consensus 255 ~~~~~~LSGGqrQ-----RvaIArAL----------DEPt~~L~-------------------~g~tvIiiTH--~~--- 295 (361)
+..+..+|+|++| +..+.+++ |||++.++ .|.|+|+++| ..
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~ 145 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGT 145 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCc
Confidence 5567788999887 23333332 99987654 2889999999 22
Q ss_pred ------cccccchhhHhhh
Q 018083 296 ------LLSLTDRARIRTY 308 (361)
Q Consensus 296 ------~~~~aDri~vvl~ 308 (361)
+..+||.++ .|+
T Consensus 146 ~~~~~~~~~~aD~ii-~l~ 163 (187)
T cd01124 146 GFGGGDVEYLVDGVI-RLR 163 (187)
T ss_pred ccCcCceeEeeeEEE-EEE
Confidence 568899884 465
No 464
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.80 E-value=3.8e-06 Score=87.77 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=42.4
Q ss_pred hhccCCchhhhhhhhhhhhcc-------------------CCCc-eeecC--------------CccEEEEEc-Cccccc
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-------------------NCPY-LSFRD--------------DKPVVVVTH-GDLLSL 299 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-------------------DEPt-~~L~~--------------g~tvIiiTH-~~~~~~ 299 (361)
+..+..|||||+||++||+|| |||+ ++|+. +.|||+||| ......
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~ 542 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQK 542 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhh
Confidence 445678999999999999652 9998 66542 789999999 556678
Q ss_pred cchhhHhhhh
Q 018083 300 TDRARIRTYL 309 (361)
Q Consensus 300 aDri~vvl~~ 309 (361)
||+++ +|.+
T Consensus 543 ~d~~~-~l~~ 551 (562)
T PHA02562 543 FDRHL-KMEK 551 (562)
T ss_pred hhcEE-EEEE
Confidence 99995 4765
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.80 E-value=1.3e-05 Score=71.24 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999886
No 466
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.79 E-value=1.2e-05 Score=77.93 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
-.++||.||||||||||+++|.+++.. .|.+|.|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~---~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSR---WPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhh---cCCCCceEEEeccc
Confidence 369999999999999999999999962 15678877766553
No 467
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.79 E-value=6.5e-06 Score=92.26 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=48.8
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GD 295 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~ 295 (361)
.+.+.++...+..+..|||||+||++||+++ |||+++|+. +.++||||| ..
T Consensus 1074 ~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~ 1153 (1179)
T TIGR02168 1074 EIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKG 1153 (1179)
T ss_pred eEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChh
Confidence 3445555566789999999999999999974 999999753 678999999 45
Q ss_pred cccccchhhH
Q 018083 296 LLSLTDRARI 305 (361)
Q Consensus 296 ~~~~aDri~v 305 (361)
...+||+++.
T Consensus 1154 ~~~~~d~~~~ 1163 (1179)
T TIGR02168 1154 TMEVADQLYG 1163 (1179)
T ss_pred HHHHhhhHee
Confidence 5678999953
No 468
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.79 E-value=1.3e-05 Score=81.64 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=49.4
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+=+-++..|..+ +.++++ + +++.+|++++|+|+||+|||||+++|++... ++.+.|...|++..
T Consensus 133 ~R~~i~~~l~tg--i~aid~---l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGergr 196 (434)
T PRK08472 133 KRGLIDEVFSVG--VKSIDG---L-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGERGR 196 (434)
T ss_pred HcCCcceeccch--hHHhhh---c-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCccch
Confidence 333444445332 356555 8 9999999999999999999999999999887 77788887776643
No 469
>PRK09183 transposase/IS protein; Provisional
Probab=97.78 E-value=2.6e-05 Score=74.42 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=40.9
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.+++..+.+.++.....+..|.+++| +++|+.+.|+||+|+|||+|+.+|+....
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345666666654322123333556999 99999999999999999999999976654
No 470
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.78 E-value=1.2e-05 Score=74.87 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++||.||||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999997
No 471
>PRK10869 recombination and repair protein; Provisional
Probab=97.77 E-value=7.5e-06 Score=86.08 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=41.9
Q ss_pred Cchhhhhhhhhhhhcc-------------CCCceeec---------------CCccEEEEEc-CccccccchhhHhhhhh
Q 018083 260 DSDVEKQYNQIVATTF-------------NCPYLSFR---------------DDKPVVVVTH-GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 260 ~LSGGqrQRvaIArAL-------------DEPt~~L~---------------~g~tvIiiTH-~~~~~~aDri~vvl~~G 310 (361)
.|||||+||++||+++ |||+++++ .+.+||+||| ..++.+||+.+ ++.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~-~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHF-FVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE-EEecc
Confidence 4899999999999887 99999964 2789999999 55668999995 47664
Q ss_pred h
Q 018083 311 E 311 (361)
Q Consensus 311 ~ 311 (361)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 472
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.75 E-value=1.5e-05 Score=71.07 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=28.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
|+++++..+++.+ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 5558999888755 9999999999999999987
No 473
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.74 E-value=2.2e-05 Score=77.16 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=37.5
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++|++++|+|||||||||++..|++.+. +..++|.+.+.|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCc
Confidence 5789999999999999999999999998 7778999888775
No 474
>PRK05922 type III secretion system ATPase; Validated
Probab=97.73 E-value=1.9e-05 Score=80.47 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=42.9
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.+++. + +.|.+|+.++|+||||+|||||+++|++..+ ++.|.+...|..
T Consensus 145 Ir~ID~---l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGer 194 (434)
T PRK05922 145 IKAIDA---F-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGER 194 (434)
T ss_pred ceeecc---e-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCC
Confidence 566555 6 9999999999999999999999999999988 888887666654
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.72 E-value=1.7e-05 Score=71.78 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+||||||||||+++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999984
No 476
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=1.8e-05 Score=81.72 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=35.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccce
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 152 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~ 152 (361)
+++.++.+++|.+++|+|||||||||++..|++.+. ...|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-----~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-----MRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-----HhcCC
Confidence 344777888999999999999999999999999987 66654
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.72 E-value=1.6e-05 Score=70.70 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.3
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999875
No 478
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.71 E-value=1.5e-05 Score=70.93 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=29.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN 143 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~ 143 (361)
++++++++.+| +.+|+||||+||||++.+|.-++.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45577788888 9999999999999999999888864
No 479
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.71 E-value=1.6e-05 Score=81.23 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=35.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++++ + |.|.+|++++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~---l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSING---L-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecc---e-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 577555 8 9999999999999999999999999999887
No 480
>PRK15494 era GTPase Era; Provisional
Probab=97.70 E-value=2.6e-05 Score=77.22 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=45.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCce-------EEEEEccCCCCcchhhhhhhhh
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge-------~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..+.+++++++++|+.. ..+ ++.++|+++.|+ .++|+|..|+|||||+|.|.|-
T Consensus 15 ~~g~~~~~~~~~~~~~~--~~~---~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVREDAS--TGS---TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCCCC--ccc---ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 44568899999999843 246 555999999999 9999999999999999999874
No 481
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.68 E-value=2.5e-05 Score=68.20 Aligned_cols=23 Identities=17% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+||+|||||||++.|.+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 46999999999999999999996
No 482
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.67 E-value=2.9e-05 Score=70.69 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 160 (361)
++|.+++|+|+||||||||++.|.+.+. +. .|.+.++|.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-----~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-----ELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCCEEEEcCEeH
Confidence 7789999999999999999999999876 33 46788888655
No 483
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.66 E-value=3.4e-05 Score=70.58 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+++|.|+||||||||++.|.+.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999985
No 484
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.65 E-value=2.8e-05 Score=74.82 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=27.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+++|+|+||||||||+++|++++. +..|.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEE
Confidence 589999999999999999999998 76665544
No 485
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.60 E-value=3.3e-05 Score=88.93 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=41.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.+..|++.+| +++|+|+|||||||++++|++++. |..|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-----~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-----CCCCeEEECCcc
Confidence 55578888886 999999999999999999999998 888999888764
No 486
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=4.4e-05 Score=82.46 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=38.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~ 159 (361)
+++.++.+++|+++++|||||+||||++..|++.+. ...| .|.+-..|
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~-----~~~G~kkV~lit~D 224 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV-----AREGADQLALLTTD 224 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH-----HHcCCCeEEEecCc
Confidence 445888888999999999999999999999999886 5555 56554443
No 487
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.57 E-value=3.1e-05 Score=78.91 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.0
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+++. + |.|.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~---l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINA---M-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecc---e-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 456444 7 9999999999999999999999999999877
No 488
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.56 E-value=3.7e-05 Score=68.37 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
.++. .+++++|+||+|||||+|.|.+-.. ...|.|.-
T Consensus 32 ~l~~-k~~vl~G~SGvGKSSLiN~L~~~~~-----~~t~~is~ 68 (161)
T PF03193_consen 32 LLKG-KTSVLLGQSGVGKSSLINALLPEAK-----QKTGEISE 68 (161)
T ss_dssp HHTT-SEEEEECSTTSSHHHHHHHHHTSS---------S----
T ss_pred HhcC-CEEEEECCCCCCHHHHHHHHHhhcc-----hhhhhhhc
Confidence 3444 8999999999999999999998766 55566653
No 489
>PRK00098 GTPase RsgA; Reviewed
Probab=97.53 E-value=4.5e-05 Score=74.14 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+|.+++++|+||+|||||+|+|.|... +..|.|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~-----~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLE-----LKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcC-----CCCcceec
Confidence 588999999999999999999999988 88899986
No 490
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.53 E-value=0.00011 Score=65.51 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||++.|.+-
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5999999999999999999983
No 491
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.52 E-value=5.8e-05 Score=79.29 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=33.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
..--+++|.||||||||||++.|+++++ ..|.|.+||..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEccee
Confidence 3446999999999999999999999974 57899998753
No 492
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.52 E-value=4.5e-05 Score=73.72 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=34.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+...+. +.+++++|+||+|||||+|+|.|... ++.|.|..
T Consensus 155 L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~-----~~~g~v~~ 194 (287)
T cd01854 155 LREYLK-GKTSVLVGQSGVGKSTLINALLPDLD-----LATGEISE 194 (287)
T ss_pred HHhhhc-cceEEEECCCCCCHHHHHHHHhchhh-----ccccceec
Confidence 545666 48999999999999999999999998 88898875
No 493
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.50 E-value=5e-05 Score=64.20 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEccCCCCcchhhhhhhhhhc
Q 018083 120 LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 120 vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|+|++|||||||++.|.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC
Confidence 68999999999999999998743
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.49 E-value=3.9e-05 Score=68.22 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=29.0
Q ss_pred ceEEEEEccCCCCcchhhhhhh---hhhcccccccccceeeec
Q 018083 117 TTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYN 156 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~---gl~~~~~~~p~~G~I~i~ 156 (361)
..+++|+||+||||||+++.|+ |+.. ++.|++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~-----~~~g~~~~~ 40 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTH-----LSTGDLLRA 40 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcE-----EeHHHHHHH
Confidence 4689999999999999999999 6655 777876544
No 495
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.49 E-value=6.4e-05 Score=76.11 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
-++||.|++|||||||++.|.++++... ...|.|.+||..+
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g--~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTG--RKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccC--CceEEEEECCccC
Confidence 6899999999999999999999997211 1268888888654
No 496
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.49 E-value=3.8e-05 Score=86.43 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=40.0
Q ss_pred hhccCCchhhhhhhhhhhhcc-----------------CCCceeecC----------------CccEEEEEc--Cccccc
Q 018083 255 KSMEGDSDVEKQYNQIVATTF-----------------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 299 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL-----------------DEPt~~L~~----------------g~tvIiiTH--~~~~~~ 299 (361)
.+++.+|||||+++++||+|| |||+.+||+ |+||+|||| ....++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 578899999999999999986 999999764 899999999 333355
Q ss_pred cchh
Q 018083 300 TDRA 303 (361)
Q Consensus 300 aDri 303 (361)
..+|
T Consensus 1024 ~~qi 1027 (1047)
T PRK10246 1024 PVQI 1027 (1047)
T ss_pred cceE
Confidence 5555
No 497
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.48 E-value=8.3e-05 Score=66.01 Aligned_cols=38 Identities=13% Similarity=0.365 Sum_probs=31.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-ecc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNS 157 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-i~G 157 (361)
++|++++|+|++||||||+.+.|++.+. +..+.+. +++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~-----~~g~~v~~id~ 40 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR-----EAGYPVEVLDG 40 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEcC
Confidence 5799999999999999999999999997 5555554 554
No 498
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.47 E-value=4.3e-05 Score=85.99 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=48.8
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GD 295 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~ 295 (361)
.+.|.++......+..||||||++++||++| |||+++||. +.++|+||| ..
T Consensus 1059 ~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~ 1138 (1164)
T TIGR02169 1059 ELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSP 1138 (1164)
T ss_pred EEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHH
Confidence 3444455555678899999999999999887 999999764 678999999 55
Q ss_pred cccccchhhH
Q 018083 296 LLSLTDRARI 305 (361)
Q Consensus 296 ~~~~aDri~v 305 (361)
...+||+++.
T Consensus 1139 ~~~~~d~~~~ 1148 (1164)
T TIGR02169 1139 MIEYADRAIG 1148 (1164)
T ss_pred HHHhcceeEe
Confidence 6689999953
No 499
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.46 E-value=6.4e-05 Score=78.11 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=45.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+.+++.+..|+.++|+||+|||||||+++|.++++ |.+|.+.+.+..+.
T Consensus 201 ~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp-----~~~~~~~le~~~i~ 250 (499)
T TIGR00368 201 KRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP-----PLTNEEAIETARIW 250 (499)
T ss_pred HhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC-----CCCCcEEEeccccc
Confidence 444999999999999999999999999999999999 99999988877653
No 500
>PRK06820 type III secretion system ATPase; Validated
Probab=97.45 E-value=7.5e-05 Score=76.28 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=39.8
Q ss_pred eeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 101 IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 101 ~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
+.++++ + +++.+|+.++|+|+||+|||||+++|++... ++.+-+-.-|+
T Consensus 151 i~aID~---l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~-----~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDG---I-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA-----ADVMVLALIGE 199 (440)
T ss_pred Cceecc---e-EEecCCCEEEEECCCCCChHHHHHHHhccCC-----CCEEEEEEEcc
Confidence 567555 8 9999999999999999999999999999887 66543333333
Done!