Query 018083
Match_columns 361
No_of_seqs 303 out of 2357
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.9E-46 2.4E-50 366.0 -6.2 218 79-335 18-265 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 4.1E-45 1.4E-49 360.0 -6.0 204 84-330 3-235 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 2.8E-45 9.7E-50 363.5 -7.7 204 84-334 2-234 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 5.6E-44 1.9E-48 340.5 -6.1 201 83-325 5-235 (275)
5 1v43_A Sugar-binding transport 100.0 1.8E-43 6E-48 350.1 -4.7 204 83-333 9-241 (372)
6 2it1_A 362AA long hypothetical 100.0 8.6E-44 3E-48 351.1 -7.2 203 84-333 2-233 (362)
7 2yyz_A Sugar ABC transporter, 100.0 9.5E-44 3.2E-48 350.5 -7.0 203 84-333 2-233 (359)
8 1oxx_K GLCV, glucose, ABC tran 100.0 8.6E-44 3E-48 350.2 -8.1 208 84-333 2-240 (353)
9 1z47_A CYSA, putative ABC-tran 100.0 1.3E-43 4.4E-48 349.0 -7.4 206 82-334 11-246 (355)
10 1g29_1 MALK, maltose transport 100.0 1.8E-43 6.1E-48 350.2 -8.8 206 84-330 2-236 (372)
11 3nh6_A ATP-binding cassette SU 100.0 3E-43 1E-47 340.2 -7.6 221 64-324 24-278 (306)
12 3tif_A Uncharacterized ABC tra 100.0 4.9E-43 1.7E-47 326.3 -6.8 197 85-321 1-232 (235)
13 3d31_A Sulfate/molybdate ABC t 100.0 3.1E-43 1.1E-47 345.5 -8.8 200 85-335 1-229 (348)
14 2olj_A Amino acid ABC transpor 100.0 2E-43 7E-48 334.6 -10.2 202 84-327 23-252 (263)
15 1g6h_A High-affinity branched- 100.0 2.5E-42 8.4E-47 325.5 -3.9 194 83-320 5-239 (257)
16 2onk_A Molybdate/tungstate ABC 100.0 7.4E-42 2.5E-46 319.7 -1.2 199 85-336 1-228 (240)
17 1b0u_A Histidine permease; ABC 100.0 3.1E-43 1.1E-47 332.8 -10.6 211 84-327 5-246 (262)
18 4g1u_C Hemin import ATP-bindin 100.0 4.7E-42 1.6E-46 325.6 -6.3 195 83-324 9-238 (266)
19 1ji0_A ABC transporter; ATP bi 100.0 6.3E-42 2.2E-46 319.7 -7.7 195 83-323 4-228 (240)
20 1vpl_A ABC transporter, ATP-bi 100.0 8.5E-42 2.9E-46 322.2 -7.4 197 82-324 12-236 (256)
21 2pcj_A ABC transporter, lipopr 100.0 7.5E-42 2.6E-46 316.1 -7.9 192 84-317 3-222 (224)
22 2yz2_A Putative ABC transporte 100.0 3.6E-41 1.2E-45 319.2 -4.5 197 85-327 2-231 (266)
23 1mv5_A LMRA, multidrug resista 100.0 1.7E-40 5.8E-45 310.4 -1.5 201 85-323 1-226 (243)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-40 3.9E-45 318.1 -2.8 203 79-323 15-252 (279)
25 2ff7_A Alpha-hemolysin translo 100.0 8.6E-41 2.9E-45 313.5 -4.3 202 85-325 7-234 (247)
26 3gd7_A Fusion complex of cysti 100.0 5E-41 1.7E-45 334.4 -7.0 202 83-335 17-254 (390)
27 4f4c_A Multidrug resistance pr 100.0 7.9E-41 2.7E-45 376.0 -7.5 229 62-325 1045-1306(1321)
28 3b5x_A Lipid A export ATP-bind 100.0 7.9E-40 2.7E-44 340.7 -1.3 225 63-324 313-568 (582)
29 2ixe_A Antigen peptide transpo 100.0 1.5E-40 5E-45 316.0 -8.7 198 83-324 14-246 (271)
30 2d2e_A SUFC protein; ABC-ATPas 100.0 4.5E-40 1.6E-44 308.9 -5.2 192 84-319 2-229 (250)
31 3qf4_B Uncharacterized ABC tra 100.0 7.8E-40 2.7E-44 341.9 -4.9 224 62-324 324-579 (598)
32 4a82_A Cystic fibrosis transme 100.0 8.7E-40 3E-44 340.2 -5.4 227 61-325 307-566 (578)
33 3b60_A Lipid A export ATP-bind 100.0 2E-39 6.8E-44 337.7 -5.1 225 63-324 313-568 (582)
34 2zu0_C Probable ATP-dependent 100.0 1.7E-39 5.8E-44 308.0 -5.2 199 82-323 17-254 (267)
35 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-39 4.1E-44 339.9 -7.4 225 62-324 310-567 (587)
36 2yl4_A ATP-binding cassette SU 100.0 2.8E-39 9.7E-44 337.3 -4.6 233 63-329 310-576 (595)
37 2ghi_A Transport protein; mult 100.0 3.6E-39 1.2E-43 304.6 -5.1 204 83-324 15-243 (260)
38 4f4c_A Multidrug resistance pr 100.0 9.3E-40 3.2E-44 367.4 -10.9 225 63-324 384-642 (1321)
39 1sgw_A Putative ABC transporte 100.0 3E-38 1E-42 290.6 -1.8 175 83-312 8-210 (214)
40 2nq2_C Hypothetical ABC transp 100.0 1.6E-38 5.4E-43 299.2 -4.2 182 84-323 3-217 (253)
41 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-38 5E-43 299.0 -7.3 184 85-323 4-222 (249)
42 2pjz_A Hypothetical protein ST 100.0 8.8E-38 3E-42 295.9 -3.6 188 85-324 1-216 (263)
43 2cbz_A Multidrug resistance-as 100.0 5.7E-37 1.9E-41 285.8 -2.5 186 84-324 2-218 (237)
44 2pze_A Cystic fibrosis transme 100.0 2.8E-37 9.4E-42 286.4 -5.0 189 84-324 5-219 (229)
45 3g5u_A MCG1178, multidrug resi 100.0 7.8E-37 2.7E-41 342.9 -7.8 226 62-324 355-614 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 8E-36 2.7E-40 334.7 -2.7 228 62-324 998-1259(1284)
47 2bbs_A Cystic fibrosis transme 100.0 4.3E-35 1.5E-39 281.2 -4.9 200 67-323 17-247 (290)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 4.3E-31 1.5E-35 272.9 -4.4 178 83-323 285-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 4.9E-31 1.7E-35 275.9 -5.7 177 84-323 356-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 7.3E-30 2.5E-34 263.7 0.8 168 82-310 266-462 (538)
51 3bk7_A ABC transporter ATP-bin 99.9 5.8E-30 2E-34 267.8 -2.2 175 84-310 82-304 (607)
52 2iw3_A Elongation factor 3A; a 99.9 7.1E-30 2.4E-34 277.5 -2.6 209 83-317 669-981 (986)
53 1yqt_A RNAse L inhibitor; ATP- 99.9 8.2E-30 2.8E-34 263.3 -3.0 173 86-310 21-234 (538)
54 3j16_B RLI1P; ribosome recycli 99.9 1.5E-29 5E-34 264.6 -2.2 176 89-324 350-560 (608)
55 3ux8_A Excinuclease ABC, A sub 99.9 1E-28 3.6E-33 260.8 -2.9 210 89-326 19-301 (670)
56 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.5E-28 5E-33 249.5 -4.1 174 82-321 115-336 (460)
57 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-27 3.9E-32 247.3 -3.2 175 89-312 3-215 (538)
58 3j16_B RLI1P; ribosome recycli 99.9 1E-27 3.5E-32 250.7 -3.8 171 89-311 81-298 (608)
59 3ux8_A Excinuclease ABC, A sub 99.9 6.1E-27 2.1E-31 247.2 -1.1 87 222-325 521-642 (670)
60 2iw3_A Elongation factor 3A; a 99.9 6E-27 2.1E-31 254.6 -4.5 174 85-323 435-635 (986)
61 2v9p_A Replication protein E1; 99.9 3.9E-25 1.3E-29 213.3 -3.7 186 54-321 62-264 (305)
62 3pih_A Uvrabc system protein A 99.9 7.1E-25 2.4E-29 237.7 -3.8 95 222-334 783-912 (916)
63 2vf7_A UVRA2, excinuclease ABC 99.9 4.7E-24 1.6E-28 229.5 0.2 87 222-326 708-830 (842)
64 2r6f_A Excinuclease ABC subuni 99.8 1.6E-23 5.6E-28 226.6 -3.6 87 223-326 824-945 (972)
65 2ygr_A Uvrabc system protein A 99.8 4.8E-23 1.7E-27 223.6 -4.3 87 223-326 842-963 (993)
66 4aby_A DNA repair protein RECN 99.8 1.5E-22 5.3E-27 200.6 -5.6 35 107-142 51-85 (415)
67 3b85_A Phosphate starvation-in 99.8 2.3E-21 8E-26 177.1 -2.4 34 115-154 20-53 (208)
68 2dpy_A FLII, flagellum-specifi 99.8 2.2E-21 7.4E-26 195.8 -3.2 185 84-325 130-346 (438)
69 3b9q_A Chloroplast SRP recepto 99.8 2.9E-20 1E-24 178.9 3.0 153 108-305 91-268 (302)
70 1e69_A Chromosome segregation 99.8 2.6E-20 8.9E-25 180.0 1.9 59 253-311 212-300 (322)
71 1tf7_A KAIC; homohexamer, hexa 99.8 9.9E-21 3.4E-25 194.5 -4.8 171 84-312 11-212 (525)
72 3aez_A Pantothenate kinase; tr 99.8 2.5E-21 8.7E-26 187.1 -9.1 161 84-311 42-246 (312)
73 4gp7_A Metallophosphoesterase; 99.7 8.1E-20 2.8E-24 160.8 0.2 30 109-138 1-30 (171)
74 1z6g_A Guanylate kinase; struc 99.7 1.3E-19 4.3E-24 165.8 0.6 128 107-282 13-158 (218)
75 2og2_A Putative signal recogni 99.7 2.4E-19 8.2E-24 176.5 2.2 152 109-305 149-325 (359)
76 1znw_A Guanylate kinase, GMP k 99.7 8.9E-20 3E-24 164.8 -1.3 151 107-308 12-202 (207)
77 3sop_A Neuronal-specific septi 99.7 5.6E-20 1.9E-24 174.2 -2.9 127 119-293 4-148 (270)
78 2obl_A ESCN; ATPase, hydrolase 99.7 2.4E-19 8.3E-24 175.7 -1.8 190 83-326 43-258 (347)
79 2pt7_A CAG-ALFA; ATPase, prote 99.7 8.7E-19 3E-23 170.5 -0.1 127 88-316 151-296 (330)
80 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 2.2E-18 7.4E-23 169.8 2.7 59 255-314 274-364 (365)
81 1tq4_A IIGP1, interferon-induc 99.7 3.9E-19 1.3E-23 178.0 -2.9 146 107-311 39-255 (413)
82 1ye8_A Protein THEP1, hypothet 99.7 7.6E-18 2.6E-22 149.9 2.3 60 254-314 70-159 (178)
83 1rj9_A FTSY, signal recognitio 99.6 3E-16 1E-20 151.1 3.4 144 116-303 101-267 (304)
84 2eyu_A Twitching motility prot 99.6 1.4E-15 4.7E-20 143.3 4.4 59 85-160 5-64 (261)
85 2ehv_A Hypothetical protein PH 99.5 5.7E-17 2E-21 148.3 -6.2 61 85-159 6-69 (251)
86 1lw7_A Transcriptional regulat 99.5 2.3E-16 7.8E-21 154.7 -3.8 181 107-321 158-353 (365)
87 2o5v_A DNA replication and rep 99.5 6.2E-15 2.1E-19 145.0 5.0 64 255-321 259-354 (359)
88 1tf7_A KAIC; homohexamer, hexa 99.5 1.4E-15 4.7E-20 156.2 -0.0 145 84-311 256-444 (525)
89 1cr0_A DNA primase/helicase; R 99.5 1.5E-15 5.1E-20 144.0 -0.5 48 107-159 25-73 (296)
90 2o8b_B DNA mismatch repair pro 99.5 2.5E-15 8.7E-20 165.1 0.4 146 84-318 749-937 (1022)
91 1htw_A HI0065; nucleotide-bind 99.5 6.9E-16 2.4E-20 135.0 -3.5 64 86-161 8-71 (158)
92 2qnr_A Septin-2, protein NEDD5 99.5 2.8E-16 9.4E-21 150.8 -7.5 55 89-161 2-57 (301)
93 2jeo_A Uridine-cytidine kinase 99.5 1.4E-15 4.6E-20 140.9 -2.8 36 107-142 15-50 (245)
94 3thx_A DNA mismatch repair pro 99.5 8.5E-15 2.9E-19 159.4 2.7 134 107-322 652-812 (934)
95 3szr_A Interferon-induced GTP- 99.5 1.8E-15 6E-20 158.3 -2.9 174 85-293 10-194 (608)
96 2i3b_A HCR-ntpase, human cance 99.4 2.3E-14 7.9E-19 128.8 2.9 137 117-316 1-169 (189)
97 4a74_A DNA repair and recombin 99.4 4.1E-15 1.4E-19 134.2 -3.3 157 113-311 21-201 (231)
98 2qm8_A GTPase/ATPase; G protei 99.4 1.2E-14 3.9E-19 141.7 -0.6 69 82-161 26-94 (337)
99 2yhs_A FTSY, cell division pro 99.4 3.4E-14 1.2E-18 144.7 2.5 168 108-321 284-477 (503)
100 3qkt_A DNA double-strand break 99.4 6.5E-14 2.2E-18 136.1 4.2 55 253-308 241-327 (339)
101 1pui_A ENGB, probable GTP-bind 99.4 4.6E-14 1.6E-18 125.7 2.4 63 85-156 3-65 (210)
102 1zp6_A Hypothetical protein AT 99.4 2.3E-14 7.8E-19 126.3 0.4 118 113-275 5-124 (191)
103 1p9r_A General secretion pathw 99.4 1.3E-14 4.5E-19 145.4 -1.9 64 85-161 143-206 (418)
104 3thx_B DNA mismatch repair pro 99.4 3.8E-14 1.3E-18 154.0 1.4 115 107-303 663-805 (918)
105 1nij_A Hypothetical protein YJ 99.4 8.4E-15 2.9E-19 141.3 -4.1 159 117-293 4-187 (318)
106 2yv5_A YJEQ protein; hydrolase 99.4 1.2E-14 4.1E-19 139.4 -3.9 124 113-274 161-301 (302)
107 3pih_A Uvrabc system protein A 99.4 7.4E-15 2.5E-19 159.5 -6.3 87 224-327 444-564 (916)
108 3e70_C DPA, signal recognition 99.4 9.1E-14 3.1E-18 135.1 1.4 143 113-303 125-288 (328)
109 2rcn_A Probable GTPase ENGC; Y 99.4 9.7E-14 3.3E-18 136.4 1.0 122 107-276 206-329 (358)
110 2f1r_A Molybdopterin-guanine d 99.3 2.8E-14 9.5E-19 126.4 -4.5 39 118-161 3-44 (171)
111 2bdt_A BH3686; alpha-beta prot 99.3 1.9E-13 6.6E-18 120.6 0.7 36 117-160 2-37 (189)
112 3asz_A Uridine kinase; cytidin 99.3 1.8E-14 6.2E-19 129.3 -7.4 30 113-142 2-31 (211)
113 2gza_A Type IV secretion syste 99.3 6.1E-14 2.1E-18 137.7 -4.8 66 87-158 137-211 (361)
114 1u0l_A Probable GTPase ENGC; p 99.3 1.1E-13 3.6E-18 132.6 -4.0 123 112-264 164-295 (301)
115 2qag_C Septin-7; cell cycle, c 99.3 2.3E-13 8E-18 136.3 -1.8 48 83-142 9-56 (418)
116 2vf7_A UVRA2, excinuclease ABC 99.3 1.1E-13 3.7E-18 149.2 -5.0 89 219-325 355-477 (842)
117 2w0m_A SSO2452; RECA, SSPF, un 99.2 4.6E-13 1.6E-17 120.4 -0.8 49 107-160 12-61 (235)
118 2qag_B Septin-6, protein NEDD5 99.2 8.3E-14 2.9E-18 139.7 -6.7 49 85-141 16-66 (427)
119 1in4_A RUVB, holliday junction 99.2 1.8E-13 6.1E-18 132.5 -7.3 70 84-160 17-93 (334)
120 3jvv_A Twitching mobility prot 99.2 1.2E-11 4.3E-16 121.3 4.8 59 90-157 93-159 (356)
121 2x8a_A Nuclear valosin-contain 99.2 2.6E-13 8.8E-18 128.3 -7.3 46 107-161 36-81 (274)
122 1pzn_A RAD51, DNA repair and r 99.2 6E-12 2.1E-16 123.0 2.0 76 107-208 120-203 (349)
123 1wb9_A DNA mismatch repair pro 99.2 6E-12 2.1E-16 135.3 2.2 35 107-142 598-632 (800)
124 2r6f_A Excinuclease ABC subuni 99.1 2E-12 6.8E-17 140.3 -2.0 88 220-325 481-602 (972)
125 2ewv_A Twitching motility prot 99.1 1.3E-11 4.5E-16 121.7 3.8 47 107-160 128-175 (372)
126 3euj_A Chromosome partition pr 99.1 2.8E-11 9.7E-16 123.1 3.3 49 107-161 20-68 (483)
127 2ygr_A Uvrabc system protein A 99.1 3.9E-12 1.3E-16 138.5 -3.8 88 220-325 498-619 (993)
128 1ewq_A DNA mismatch repair pro 99.1 2.6E-11 8.9E-16 129.7 1.8 33 107-142 569-601 (765)
129 3c8u_A Fructokinase; YP_612366 99.0 4.9E-11 1.7E-15 107.3 2.9 43 114-161 19-64 (208)
130 1sq5_A Pantothenate kinase; P- 99.0 2.5E-11 8.4E-16 116.4 -0.8 68 82-160 34-123 (308)
131 1t9h_A YLOQ, probable GTPase E 99.0 3E-12 1E-16 123.4 -7.7 45 112-161 168-215 (307)
132 3tr0_A Guanylate kinase, GMP k 99.0 2.3E-10 7.7E-15 101.5 4.7 73 111-207 1-74 (205)
133 1nlf_A Regulatory protein REPA 99.0 1.3E-10 4.3E-15 109.3 3.1 30 113-142 26-55 (279)
134 1s96_A Guanylate kinase, GMP k 99.0 2E-10 6.7E-15 105.3 3.7 74 110-207 9-89 (219)
135 1f2t_B RAD50 ABC-ATPase; DNA d 98.9 8.4E-11 2.9E-15 101.6 -0.2 54 254-308 51-136 (148)
136 1udx_A The GTP-binding protein 98.9 2.2E-10 7.5E-15 114.7 2.6 35 107-141 147-181 (416)
137 1ixz_A ATP-dependent metallopr 98.9 7.6E-11 2.6E-15 108.8 -1.4 60 86-160 26-85 (254)
138 1odf_A YGR205W, hypothetical 3 98.9 7.7E-11 2.6E-15 112.5 -1.5 29 114-142 28-56 (290)
139 1n0w_A DNA repair protein RAD5 98.9 8.3E-11 2.8E-15 106.7 -1.3 42 113-159 20-68 (243)
140 1iy2_A ATP-dependent metallopr 98.9 7.4E-11 2.5E-15 110.7 -2.1 59 87-160 51-109 (278)
141 2bbw_A Adenylate kinase 4, AK4 98.9 2.8E-11 9.6E-16 111.6 -5.3 39 116-159 26-67 (246)
142 2cvh_A DNA repair and recombin 98.9 3.1E-10 1.1E-14 101.4 1.0 44 107-157 9-53 (220)
143 3lnc_A Guanylate kinase, GMP k 98.9 6.2E-10 2.1E-14 101.4 2.3 36 107-142 17-53 (231)
144 3nwj_A ATSK2; P loop, shikimat 98.7 1.2E-09 4E-14 102.2 -0.6 54 84-142 16-73 (250)
145 1qhl_A Protein (cell division 98.7 2.6E-10 9E-15 105.2 -5.3 58 85-161 9-66 (227)
146 3lda_A DNA repair protein RAD5 98.7 2.5E-09 8.5E-14 106.5 1.1 42 113-159 174-222 (400)
147 3kta_B Chromosome segregation 98.7 2.3E-09 7.8E-14 94.9 0.3 52 253-304 57-137 (173)
148 3uie_A Adenylyl-sulfate kinase 98.6 5.8E-09 2E-13 93.0 0.4 61 89-161 3-65 (200)
149 1vma_A Cell division protein F 98.6 1.3E-08 4.3E-13 97.9 2.6 46 110-160 97-142 (306)
150 2oap_1 GSPE-2, type II secreti 98.6 8.5E-09 2.9E-13 105.7 0.2 48 107-159 250-297 (511)
151 3kta_A Chromosome segregation 98.5 2.7E-08 9.3E-13 86.7 2.5 41 108-154 18-58 (182)
152 1lvg_A Guanylate kinase, GMP k 98.5 2.8E-08 9.7E-13 88.8 2.5 28 115-142 2-29 (198)
153 4eun_A Thermoresistant glucoki 98.5 3.5E-08 1.2E-12 87.8 2.1 42 111-161 23-64 (200)
154 2j41_A Guanylate kinase; GMP, 98.4 6.5E-08 2.2E-12 85.4 2.7 31 112-142 1-31 (207)
155 2ius_A DNA translocase FTSK; n 98.4 3.9E-08 1.3E-12 100.7 0.8 48 109-161 159-208 (512)
156 1sxj_E Activator 1 40 kDa subu 98.4 7.5E-08 2.6E-12 92.3 2.5 38 118-160 37-75 (354)
157 4ad8_A DNA repair protein RECN 98.4 3.8E-08 1.3E-12 100.6 -0.2 55 255-310 391-473 (517)
158 3vaa_A Shikimate kinase, SK; s 98.4 1E-07 3.5E-12 84.8 2.4 46 94-142 5-50 (199)
159 4e22_A Cytidylate kinase; P-lo 98.4 7.3E-08 2.5E-12 89.4 1.1 41 115-160 25-76 (252)
160 3a00_A Guanylate kinase, GMP k 98.3 1.3E-07 4.5E-12 83.3 2.3 26 117-142 1-26 (186)
161 1ls1_A Signal recognition part 98.3 1.4E-07 4.9E-12 89.9 2.7 61 86-161 77-137 (295)
162 1kgd_A CASK, peripheral plasma 98.3 1.7E-07 5.9E-12 82.1 2.8 37 115-156 3-40 (180)
163 1rz3_A Hypothetical protein rb 98.3 2.1E-07 7.3E-12 83.0 3.4 44 112-160 17-60 (201)
164 2dhr_A FTSH; AAA+ protein, hex 98.3 1.6E-07 5.6E-12 95.9 2.4 46 107-161 56-101 (499)
165 3ec2_A DNA replication protein 98.3 1.8E-07 6.1E-12 81.5 1.5 36 111-151 32-67 (180)
166 1zu4_A FTSY; GTPase, signal re 98.3 3.9E-07 1.3E-11 87.9 3.9 49 108-161 96-144 (320)
167 2kjq_A DNAA-related protein; s 98.2 5.9E-07 2E-11 77.0 3.9 39 116-160 35-75 (149)
168 2p67_A LAO/AO transport system 98.2 1.9E-07 6.4E-12 90.6 0.5 66 84-160 29-94 (341)
169 3tqc_A Pantothenate kinase; bi 98.2 7.2E-08 2.5E-12 93.3 -2.4 62 89-159 64-131 (321)
170 2vp4_A Deoxynucleoside kinase; 98.2 6.2E-07 2.1E-11 81.7 3.9 42 110-160 13-54 (230)
171 3t34_A Dynamin-related protein 98.2 1.2E-06 4E-11 85.3 5.8 60 87-157 10-71 (360)
172 1oix_A RAS-related protein RAB 98.1 1.2E-06 4.1E-11 76.9 3.9 43 118-160 30-78 (191)
173 3hr8_A Protein RECA; alpha and 98.1 1E-07 3.6E-12 93.4 -3.5 41 113-158 57-98 (356)
174 3tau_A Guanylate kinase, GMP k 98.1 1.4E-06 4.7E-11 78.2 3.2 28 115-142 6-33 (208)
175 1w1w_A Structural maintenance 98.1 1.2E-06 4.2E-11 87.2 3.2 52 256-308 329-410 (430)
176 1svm_A Large T antigen; AAA+ f 98.1 8.7E-07 3E-11 87.5 2.1 36 107-142 159-194 (377)
177 3cr8_A Sulfate adenylyltranfer 98.1 7.1E-07 2.4E-11 92.3 0.9 43 113-160 365-409 (552)
178 3ice_A Transcription terminati 98.0 2.1E-06 7.3E-11 85.0 3.8 56 82-142 130-199 (422)
179 1knq_A Gluconate kinase; ALFA/ 98.0 2.3E-06 8E-11 73.8 3.6 37 115-160 6-42 (175)
180 2f9l_A RAB11B, member RAS onco 98.0 2.4E-06 8.3E-11 75.1 3.5 42 119-160 7-54 (199)
181 1w1w_A Structural maintenance 98.0 6.3E-07 2.2E-11 89.3 -0.4 45 86-142 7-51 (430)
182 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 2.6E-06 8.9E-11 84.5 3.4 47 113-159 16-69 (392)
183 1cke_A CK, MSSA, protein (cyti 98.0 1.7E-06 5.8E-11 77.6 1.4 37 117-155 5-41 (227)
184 2r6a_A DNAB helicase, replicat 98.0 1.5E-06 5.1E-11 87.3 1.0 49 107-160 193-242 (454)
185 2dy1_A Elongation factor G; tr 97.9 1.9E-06 6.5E-11 90.8 1.8 46 111-160 3-48 (665)
186 3ney_A 55 kDa erythrocyte memb 97.9 3.6E-06 1.2E-10 75.9 2.7 32 111-142 13-44 (197)
187 3auy_A DNA double-strand break 97.9 1.8E-06 6.1E-11 84.5 0.2 52 256-308 276-359 (371)
188 1j8m_F SRP54, signal recogniti 97.9 5.3E-06 1.8E-10 79.2 3.1 61 87-161 76-137 (297)
189 1kag_A SKI, shikimate kinase I 97.9 4.3E-06 1.5E-10 71.7 2.1 27 116-142 3-29 (173)
190 2www_A Methylmalonic aciduria 97.8 7.4E-06 2.5E-10 79.7 3.3 42 115-161 72-113 (349)
191 2px0_A Flagellar biosynthesis 97.8 6.7E-06 2.3E-10 78.3 2.9 41 115-160 103-144 (296)
192 2pez_A Bifunctional 3'-phospho 97.8 7.3E-06 2.5E-10 71.1 2.8 40 115-160 3-44 (179)
193 3m6a_A ATP-dependent protease 97.8 2.6E-06 8.9E-11 87.7 -0.1 61 86-158 84-144 (543)
194 2qt1_A Nicotinamide riboside k 97.8 7.1E-06 2.4E-10 72.8 2.7 33 110-142 14-46 (207)
195 4eaq_A DTMP kinase, thymidylat 97.8 1.4E-05 4.8E-10 73.1 3.8 44 107-156 13-59 (229)
196 1m7g_A Adenylylsulfate kinase; 97.7 1.1E-05 3.6E-10 72.2 2.8 45 111-160 19-65 (211)
197 2ffh_A Protein (FFH); SRP54, s 97.7 1E-05 3.6E-10 80.9 3.0 59 88-161 79-137 (425)
198 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 1.2E-05 4.1E-10 68.8 2.2 31 110-141 17-47 (149)
199 2qtf_A Protein HFLX, GTP-bindi 97.7 2.3E-05 8E-10 76.7 3.9 26 117-142 178-204 (364)
200 3k1j_A LON protease, ATP-depen 97.6 5.5E-06 1.9E-10 86.2 -0.8 63 88-161 37-100 (604)
201 4ad8_A DNA repair protein RECN 97.6 1E-05 3.5E-10 82.6 0.5 35 107-142 51-85 (517)
202 2yvu_A Probable adenylyl-sulfa 97.5 3.8E-05 1.3E-09 66.9 3.4 42 111-157 7-49 (186)
203 1f6b_A SAR1; gtpases, N-termin 97.5 2.6E-05 8.9E-10 68.6 2.0 32 107-139 16-47 (198)
204 1y63_A LMAJ004144AAA protein; 97.5 4.1E-05 1.4E-09 66.9 2.6 31 110-140 3-33 (184)
205 2dr3_A UPF0273 protein PH0284; 97.4 3.2E-05 1.1E-09 69.6 1.6 36 107-142 12-49 (247)
206 2qor_A Guanylate kinase; phosp 97.4 4.4E-05 1.5E-09 67.7 2.1 30 113-142 8-37 (204)
207 1jjv_A Dephospho-COA kinase; P 97.4 4.8E-05 1.7E-09 67.2 2.2 21 119-139 4-24 (206)
208 3qks_A DNA double-strand break 97.4 5.1E-05 1.7E-09 68.0 2.2 32 110-142 17-48 (203)
209 1m2o_B GTP-binding protein SAR 97.4 7.4E-05 2.5E-09 65.2 2.9 32 107-139 14-45 (190)
210 2if2_A Dephospho-COA kinase; a 97.3 7.6E-05 2.6E-09 65.8 2.0 21 119-139 3-23 (204)
211 2gj8_A MNME, tRNA modification 97.3 8.3E-05 2.8E-09 63.9 2.2 27 115-141 2-28 (172)
212 1sxj_C Activator 1 40 kDa subu 97.3 2.2E-05 7.4E-10 75.3 -2.0 49 88-142 21-71 (340)
213 2wjg_A FEOB, ferrous iron tran 97.2 0.00012 4.2E-09 62.8 2.5 23 118-140 8-30 (188)
214 1ega_A Protein (GTP-binding pr 97.2 0.00011 3.9E-09 69.6 2.4 28 114-141 5-32 (301)
215 2qag_A Septin-2, protein NEDD5 97.2 3.5E-05 1.2E-09 75.2 -1.3 47 84-142 16-62 (361)
216 1mky_A Probable GTP-binding pr 97.2 0.00013 4.5E-09 72.7 2.7 42 118-159 181-229 (439)
217 3t61_A Gluconokinase; PSI-biol 97.2 0.00013 4.4E-09 64.3 2.1 26 117-142 18-43 (202)
218 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00015 5.2E-09 71.8 2.8 46 113-158 18-69 (396)
219 3auy_A DNA double-strand break 97.1 0.00016 5.5E-09 70.5 2.9 32 107-139 16-47 (371)
220 2p5t_B PEZT; postsegregational 97.1 0.00021 7.2E-09 65.8 3.5 41 113-160 28-68 (253)
221 3cm0_A Adenylate kinase; ATP-b 97.1 0.00016 5.6E-09 62.4 2.6 27 115-141 2-28 (186)
222 2ga8_A Hypothetical 39.9 kDa p 97.1 8.9E-05 3E-09 72.5 1.0 36 107-142 12-49 (359)
223 1np6_A Molybdopterin-guanine d 97.1 0.0002 6.8E-09 63.0 2.9 38 118-157 7-44 (174)
224 1lv7_A FTSH; alpha/beta domain 97.1 0.00018 6.2E-09 65.8 2.7 34 107-142 37-70 (257)
225 2wji_A Ferrous iron transport 97.1 0.00018 6.1E-09 61.0 1.9 24 118-141 4-27 (165)
226 3kb2_A SPBC2 prophage-derived 97.1 0.0002 7E-09 60.6 2.3 24 119-142 3-26 (173)
227 3ihw_A Centg3; RAS, centaurin, 97.0 0.00047 1.6E-08 59.7 4.3 22 119-140 22-43 (184)
228 2zej_A Dardarin, leucine-rich 97.0 0.00022 7.6E-09 61.5 1.8 24 119-142 4-27 (184)
229 1q3t_A Cytidylate kinase; nucl 97.0 0.00029 9.9E-09 63.9 2.6 40 113-154 12-51 (236)
230 1gtv_A TMK, thymidylate kinase 96.9 0.00017 5.8E-09 63.7 0.8 24 119-142 2-25 (214)
231 3r20_A Cytidylate kinase; stru 96.9 0.00017 5.8E-09 66.5 0.7 35 117-153 9-43 (233)
232 1qhx_A CPT, protein (chloramph 96.9 0.00032 1.1E-08 60.1 2.4 26 117-142 3-28 (178)
233 3iij_A Coilin-interacting nucl 96.8 0.00044 1.5E-08 59.6 2.5 30 113-142 7-36 (180)
234 2rhm_A Putative kinase; P-loop 96.8 0.00047 1.6E-08 59.6 2.7 28 115-142 3-30 (193)
235 1ypw_A Transitional endoplasmi 96.8 0.00044 1.5E-08 74.3 2.8 32 111-142 232-263 (806)
236 2jaq_A Deoxyguanosine kinase; 96.8 0.00045 1.5E-08 60.1 2.4 24 119-142 2-25 (205)
237 3lw7_A Adenylate kinase relate 96.8 0.00041 1.4E-08 58.4 2.0 19 119-137 3-21 (179)
238 4a1f_A DNAB helicase, replicat 96.8 0.00041 1.4E-08 67.4 2.2 36 107-142 36-71 (338)
239 1kht_A Adenylate kinase; phosp 96.8 0.00048 1.7E-08 59.3 2.3 26 117-142 3-28 (192)
240 3kl4_A SRP54, signal recogniti 96.8 0.00056 1.9E-08 68.6 2.9 40 116-160 96-135 (433)
241 2ze6_A Isopentenyl transferase 96.7 0.00055 1.9E-08 63.2 2.5 25 118-142 2-26 (253)
242 1via_A Shikimate kinase; struc 96.7 0.00049 1.7E-08 59.1 1.9 24 119-142 6-29 (175)
243 3lxx_A GTPase IMAP family memb 96.7 0.00054 1.9E-08 62.0 2.2 25 118-142 30-54 (239)
244 1z08_A RAS-related protein RAB 96.7 0.0012 4.1E-08 55.1 4.1 23 119-141 8-30 (170)
245 1gvn_B Zeta; postsegregational 96.7 0.00097 3.3E-08 62.8 3.8 28 115-142 31-58 (287)
246 3cf0_A Transitional endoplasmi 96.7 0.00071 2.4E-08 63.8 2.8 31 112-142 44-74 (301)
247 1vht_A Dephospho-COA kinase; s 96.7 0.00071 2.4E-08 60.2 2.7 24 116-139 3-26 (218)
248 1uf9_A TT1252 protein; P-loop, 96.7 0.00072 2.4E-08 58.9 2.6 24 117-140 8-31 (203)
249 3trf_A Shikimate kinase, SK; a 96.7 0.00065 2.2E-08 58.6 2.3 26 117-142 5-30 (185)
250 2zr9_A Protein RECA, recombina 96.6 0.00059 2E-08 66.3 1.9 39 113-156 57-95 (349)
251 2v54_A DTMP kinase, thymidylat 96.6 0.00077 2.7E-08 58.9 2.5 26 116-141 3-28 (204)
252 1ly1_A Polynucleotide kinase; 96.6 0.00069 2.4E-08 57.7 2.1 22 118-139 3-24 (181)
253 2plr_A DTMP kinase, probable t 96.6 0.00084 2.9E-08 58.7 2.6 27 116-142 3-29 (213)
254 1ex7_A Guanylate kinase; subst 96.6 0.0007 2.4E-08 60.2 2.0 24 119-142 3-26 (186)
255 2c95_A Adenylate kinase 1; tra 96.6 0.00082 2.8E-08 58.2 2.4 28 115-142 7-34 (196)
256 4ag6_A VIRB4 ATPase, type IV s 96.6 0.00087 3E-08 65.5 2.8 38 116-158 34-71 (392)
257 2vli_A Antibiotic resistance p 96.5 0.00091 3.1E-08 57.4 2.3 27 116-142 4-30 (183)
258 3cbq_A GTP-binding protein REM 96.5 0.0013 4.5E-08 57.5 3.2 24 118-141 24-47 (195)
259 3ake_A Cytidylate kinase; CMP 96.5 0.00093 3.2E-08 58.4 2.2 24 119-142 4-27 (208)
260 2ce7_A Cell division protein F 96.5 0.00086 2.9E-08 68.0 2.2 34 107-142 41-74 (476)
261 2wwf_A Thymidilate kinase, put 96.5 0.00093 3.2E-08 58.7 2.2 28 115-142 8-35 (212)
262 1nks_A Adenylate kinase; therm 96.5 0.00096 3.3E-08 57.4 2.2 24 119-142 3-26 (194)
263 2ew1_A RAS-related protein RAB 96.5 0.0019 6.4E-08 57.0 4.0 24 118-141 27-50 (201)
264 2bcg_Y Protein YP2, GTP-bindin 96.5 0.002 6.9E-08 56.1 4.2 23 119-141 10-32 (206)
265 1nn5_A Similar to deoxythymidy 96.5 0.0011 3.7E-08 58.3 2.4 29 114-142 6-34 (215)
266 1tev_A UMP-CMP kinase; ploop, 96.5 0.0011 3.8E-08 57.1 2.4 26 117-142 3-28 (196)
267 3k53_A Ferrous iron transport 96.5 0.0009 3.1E-08 62.0 2.0 24 119-142 5-28 (271)
268 1xjc_A MOBB protein homolog; s 96.4 0.0013 4.4E-08 57.7 2.6 25 118-142 5-29 (169)
269 4fcw_A Chaperone protein CLPB; 96.4 0.0015 5.1E-08 60.9 3.2 32 117-153 47-78 (311)
270 2bwj_A Adenylate kinase 5; pho 96.4 0.00041 1.4E-08 60.3 -0.6 30 113-142 8-37 (199)
271 2z0h_A DTMP kinase, thymidylat 96.4 0.0012 4.1E-08 57.2 2.2 24 119-142 2-25 (197)
272 2ged_A SR-beta, signal recogni 96.4 0.0012 4.1E-08 56.8 2.1 24 118-141 49-72 (193)
273 1vg8_A RAS-related protein RAB 96.3 0.0024 8.1E-08 55.4 3.9 24 118-141 9-32 (207)
274 1z2a_A RAS-related protein RAB 96.3 0.0013 4.6E-08 54.6 2.1 23 119-141 7-29 (168)
275 1jal_A YCHF protein; nucleotid 96.3 0.0016 5.5E-08 63.8 2.9 41 118-158 3-49 (363)
276 2ce2_X GTPase HRAS; signaling 96.3 0.0014 4.7E-08 54.1 2.0 23 119-141 5-27 (166)
277 1a7j_A Phosphoribulokinase; tr 96.3 0.0015 5.3E-08 61.6 2.6 27 116-142 4-30 (290)
278 2dyk_A GTP-binding protein; GT 96.3 0.0014 4.9E-08 54.1 2.1 23 119-141 3-25 (161)
279 1qf9_A UMP/CMP kinase, protein 96.3 0.002 6.8E-08 55.3 3.1 26 117-142 6-31 (194)
280 1c1y_A RAS-related protein RAP 96.3 0.0021 7.1E-08 53.4 3.1 22 119-140 5-26 (167)
281 1kao_A RAP2A; GTP-binding prot 96.3 0.0015 5.1E-08 54.0 2.1 23 119-141 5-27 (167)
282 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0032 1.1E-07 53.3 4.2 22 119-140 7-28 (186)
283 3q72_A GTP-binding protein RAD 96.2 0.0013 4.4E-08 54.8 1.6 24 119-142 4-27 (166)
284 1u8z_A RAS-related protein RAL 96.2 0.0016 5.6E-08 53.9 2.1 23 119-141 6-28 (168)
285 2erx_A GTP-binding protein DI- 96.2 0.0016 5.4E-08 54.3 2.1 22 119-140 5-26 (172)
286 1ek0_A Protein (GTP-binding pr 96.2 0.0015 5.2E-08 54.2 1.9 23 119-141 5-27 (170)
287 1z0j_A RAB-22, RAS-related pro 96.2 0.0017 5.8E-08 54.1 2.1 23 119-141 8-30 (170)
288 1g16_A RAS-related protein SEC 96.2 0.0016 5.6E-08 54.2 2.0 23 119-141 5-27 (170)
289 2nzj_A GTP-binding protein REM 96.2 0.0016 5.3E-08 54.7 1.9 23 119-141 6-28 (175)
290 1ky3_A GTP-binding protein YPT 96.2 0.0017 5.8E-08 54.7 2.1 24 118-141 9-32 (182)
291 3fb4_A Adenylate kinase; psych 96.2 0.0017 5.9E-08 57.4 2.2 24 119-142 2-25 (216)
292 1svi_A GTP-binding protein YSX 96.2 0.0016 5.6E-08 55.9 2.0 24 117-140 23-46 (195)
293 3pqc_A Probable GTP-binding pr 96.2 0.0016 5.6E-08 55.6 2.0 23 119-141 25-47 (195)
294 1e6c_A Shikimate kinase; phosp 96.2 0.0016 5.4E-08 55.3 1.9 24 119-142 4-27 (173)
295 2lkc_A Translation initiation 96.2 0.0021 7.2E-08 54.2 2.6 27 115-141 6-32 (178)
296 1aky_A Adenylate kinase; ATP:A 96.2 0.0019 6.4E-08 57.6 2.4 27 116-142 3-29 (220)
297 2q3h_A RAS homolog gene family 96.2 0.0035 1.2E-07 54.3 4.1 27 115-141 18-44 (201)
298 1zak_A Adenylate kinase; ATP:A 96.2 0.0018 6E-08 57.8 2.2 27 116-142 4-30 (222)
299 2a5j_A RAS-related protein RAB 96.2 0.0032 1.1E-07 54.2 3.8 24 118-141 22-45 (191)
300 2pbr_A DTMP kinase, thymidylat 96.2 0.0019 6.5E-08 55.6 2.3 24 119-142 2-25 (195)
301 2fn4_A P23, RAS-related protei 96.2 0.0018 6.1E-08 54.5 2.0 24 118-141 10-33 (181)
302 3q85_A GTP-binding protein REM 96.2 0.0017 5.9E-08 54.2 1.9 24 119-142 4-27 (169)
303 3tw8_B RAS-related protein RAB 96.2 0.0016 5.6E-08 54.8 1.8 23 119-141 11-33 (181)
304 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0019 6.4E-08 54.4 2.1 23 119-141 9-31 (177)
305 1gwn_A RHO-related GTP-binding 96.1 0.0034 1.2E-07 55.4 3.9 24 118-141 29-52 (205)
306 2cdn_A Adenylate kinase; phosp 96.1 0.0022 7.4E-08 56.3 2.6 27 116-142 19-45 (201)
307 1ukz_A Uridylate kinase; trans 96.1 0.0026 8.8E-08 55.7 3.0 28 115-142 13-40 (203)
308 3lxw_A GTPase IMAP family memb 96.1 0.0018 6.2E-08 59.3 2.1 26 117-142 21-46 (247)
309 3clv_A RAB5 protein, putative; 96.1 0.0019 6.7E-08 55.1 2.1 24 118-141 8-31 (208)
310 1r2q_A RAS-related protein RAB 96.1 0.0021 7.2E-08 53.4 2.1 22 119-140 8-29 (170)
311 2cxx_A Probable GTP-binding pr 96.1 0.0019 6.6E-08 55.0 1.9 23 119-141 3-25 (190)
312 1zd8_A GTP:AMP phosphotransfer 96.1 0.002 6.9E-08 57.8 2.1 28 115-142 5-32 (227)
313 2pt5_A Shikimate kinase, SK; a 96.1 0.0022 7.6E-08 54.2 2.3 24 119-142 2-25 (168)
314 2iyv_A Shikimate kinase, SK; t 96.1 0.0018 6.3E-08 55.7 1.8 25 118-142 3-27 (184)
315 1fzq_A ADP-ribosylation factor 96.1 0.0017 6E-08 55.7 1.6 25 117-141 16-40 (181)
316 3dl0_A Adenylate kinase; phosp 96.1 0.0021 7.2E-08 56.9 2.2 24 119-142 2-25 (216)
317 3bos_A Putative DNA replicatio 96.1 0.0027 9.2E-08 56.2 2.8 27 116-142 51-77 (242)
318 1zuh_A Shikimate kinase; alpha 96.1 0.0023 7.7E-08 54.4 2.2 25 118-142 8-32 (168)
319 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0022 7.5E-08 54.5 2.1 23 119-141 6-28 (189)
320 3bc1_A RAS-related protein RAB 96.1 0.0022 7.5E-08 54.5 2.1 23 119-141 13-35 (195)
321 2yc2_C IFT27, small RAB-relate 96.1 0.0024 8E-08 55.3 2.4 23 118-140 21-43 (208)
322 3b1v_A Ferrous iron uptake tra 96.0 0.002 6.7E-08 60.3 1.9 23 119-141 5-27 (272)
323 1uj2_A Uridine-cytidine kinase 96.0 0.0023 7.8E-08 58.6 2.2 26 117-142 22-47 (252)
324 3c5c_A RAS-like protein 12; GD 96.0 0.0048 1.6E-07 53.2 4.2 24 118-141 22-45 (187)
325 1moz_A ARL1, ADP-ribosylation 96.0 0.0022 7.4E-08 54.4 1.9 24 116-139 17-40 (183)
326 2y8e_A RAB-protein 6, GH09086P 96.0 0.0023 7.9E-08 53.7 2.0 22 119-140 16-37 (179)
327 2oil_A CATX-8, RAS-related pro 96.0 0.0024 8.2E-08 55.0 2.1 24 118-141 26-49 (193)
328 1r8s_A ADP-ribosylation factor 96.0 0.0025 8.4E-08 53.0 2.1 22 119-140 2-23 (164)
329 2atx_A Small GTP binding prote 96.0 0.0051 1.7E-07 52.9 4.2 22 119-140 20-41 (194)
330 1upt_A ARL1, ADP-ribosylation 96.0 0.0032 1.1E-07 52.6 2.7 23 117-139 7-29 (171)
331 2hxs_A RAB-26, RAS-related pro 96.0 0.0026 8.9E-08 53.6 2.2 23 119-141 8-30 (178)
332 2qby_A CDC6 homolog 1, cell di 96.0 0.0027 9.3E-08 60.3 2.6 28 115-142 43-70 (386)
333 2bov_A RAla, RAS-related prote 96.0 0.0033 1.1E-07 54.3 2.9 24 118-141 15-38 (206)
334 1z0f_A RAB14, member RAS oncog 96.0 0.0026 9E-08 53.4 2.1 24 118-141 16-39 (179)
335 2a9k_A RAS-related protein RAL 95.9 0.0027 9.1E-08 53.7 2.1 24 118-141 19-42 (187)
336 2g6b_A RAS-related protein RAB 95.9 0.0027 9.3E-08 53.5 2.1 24 118-141 11-34 (180)
337 3t5d_A Septin-7; GTP-binding p 95.9 0.0022 7.6E-08 59.5 1.7 23 119-141 10-32 (274)
338 3con_A GTPase NRAS; structural 95.9 0.0027 9.4E-08 54.3 2.1 23 119-141 23-45 (190)
339 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0038 1.3E-07 53.4 3.1 23 119-141 9-31 (184)
340 2w58_A DNAI, primosome compone 95.9 0.0031 1.1E-07 55.1 2.5 25 118-142 55-79 (202)
341 2efe_B Small GTP-binding prote 95.9 0.0029 9.9E-08 53.4 2.2 23 119-141 14-36 (181)
342 3t1o_A Gliding protein MGLA; G 95.9 0.003 1E-07 54.0 2.2 24 119-142 16-39 (198)
343 1ypw_A Transitional endoplasmi 95.9 0.0019 6.5E-08 69.4 1.2 33 110-142 504-536 (806)
344 2bme_A RAB4A, RAS-related prot 95.9 0.0029 9.9E-08 53.8 2.0 24 118-141 11-34 (186)
345 1nrj_B SR-beta, signal recogni 95.9 0.0029 1E-07 55.6 2.1 23 119-141 14-36 (218)
346 3kkq_A RAS-related protein M-R 95.8 0.0045 1.6E-07 52.5 3.2 24 118-141 19-42 (183)
347 2grj_A Dephospho-COA kinase; T 95.8 0.003 1E-07 56.1 2.1 25 117-141 12-36 (192)
348 3tlx_A Adenylate kinase 2; str 95.8 0.0036 1.2E-07 57.2 2.7 27 116-142 28-54 (243)
349 3t5g_A GTP-binding protein RHE 95.8 0.0045 1.6E-07 52.4 3.1 21 119-139 8-28 (181)
350 2j0v_A RAC-like GTP-binding pr 95.8 0.0096 3.3E-07 52.0 5.3 26 115-140 7-32 (212)
351 2xtp_A GTPase IMAP family memb 95.8 0.003 1E-07 57.6 2.0 24 118-141 23-46 (260)
352 3tkl_A RAS-related protein RAB 95.8 0.0033 1.1E-07 53.9 2.1 24 118-141 17-40 (196)
353 1fnn_A CDC6P, cell division co 95.8 0.0049 1.7E-07 58.9 3.5 24 119-142 46-69 (389)
354 3iby_A Ferrous iron transport 95.8 0.003 1E-07 58.4 2.0 23 119-141 3-25 (256)
355 3cpj_B GTP-binding protein YPT 95.8 0.006 2.1E-07 54.1 3.9 24 118-141 14-37 (223)
356 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0035 1.2E-07 57.8 2.4 27 116-142 3-29 (260)
357 2gf0_A GTP-binding protein DI- 95.8 0.0033 1.1E-07 54.1 2.0 23 118-140 9-31 (199)
358 2gf9_A RAS-related protein RAB 95.8 0.0034 1.2E-07 53.9 2.1 24 118-141 23-46 (189)
359 1ksh_A ARF-like protein 2; sma 95.8 0.0033 1.1E-07 53.6 2.0 27 115-141 16-42 (186)
360 1ko7_A HPR kinase/phosphatase; 95.8 0.0033 1.1E-07 60.4 2.1 32 107-139 135-166 (314)
361 2fg5_A RAB-22B, RAS-related pr 95.8 0.0034 1.1E-07 54.3 2.0 23 119-141 25-47 (192)
362 1v5w_A DMC1, meiotic recombina 95.8 0.0038 1.3E-07 60.2 2.6 28 113-140 118-145 (343)
363 1jbk_A CLPB protein; beta barr 95.8 0.0041 1.4E-07 52.4 2.5 28 115-142 41-68 (195)
364 3b9p_A CG5977-PA, isoform A; A 95.7 0.0037 1.3E-07 58.0 2.4 26 117-142 54-79 (297)
365 3llm_A ATP-dependent RNA helic 95.7 0.0019 6.5E-08 58.4 0.4 27 113-139 72-98 (235)
366 3reg_A RHO-like small GTPase; 95.7 0.0052 1.8E-07 52.9 3.2 24 118-141 24-47 (194)
367 1wf3_A GTP-binding protein; GT 95.7 0.0034 1.2E-07 59.5 2.1 22 119-140 9-30 (301)
368 2xb4_A Adenylate kinase; ATP-b 95.7 0.0038 1.3E-07 56.1 2.3 24 119-142 2-25 (223)
369 2e87_A Hypothetical protein PH 95.7 0.0033 1.1E-07 60.7 2.0 26 116-141 166-191 (357)
370 3oes_A GTPase rhebl1; small GT 95.7 0.0058 2E-07 53.1 3.4 28 115-142 22-49 (201)
371 1z06_A RAS-related protein RAB 95.7 0.0038 1.3E-07 53.6 2.1 23 118-140 21-43 (189)
372 2h57_A ADP-ribosylation factor 95.7 0.0032 1.1E-07 54.1 1.6 24 118-141 22-45 (190)
373 3dz8_A RAS-related protein RAB 95.7 0.0039 1.3E-07 53.7 2.0 23 119-141 25-47 (191)
374 3iev_A GTP-binding protein ERA 95.7 0.0037 1.3E-07 59.3 2.1 26 115-141 9-34 (308)
375 2v3c_C SRP54, signal recogniti 95.6 0.0054 1.8E-07 61.3 3.3 43 112-159 92-136 (432)
376 2iwr_A Centaurin gamma 1; ANK 95.6 0.0045 1.6E-07 52.2 2.3 23 118-140 8-30 (178)
377 2f6r_A COA synthase, bifunctio 95.6 0.0045 1.5E-07 58.0 2.5 23 117-139 75-97 (281)
378 2wsm_A Hydrogenase expression/ 95.6 0.0041 1.4E-07 54.9 2.1 25 118-142 31-55 (221)
379 1zbd_A Rabphilin-3A; G protein 95.6 0.0041 1.4E-07 53.9 2.1 23 119-141 10-32 (203)
380 2h17_A ADP-ribosylation factor 95.6 0.0039 1.3E-07 53.2 1.9 23 118-140 22-44 (181)
381 1x3s_A RAS-related protein RAB 95.6 0.0043 1.5E-07 53.0 2.1 24 118-141 16-39 (195)
382 2fu5_C RAS-related protein RAB 95.6 0.0037 1.3E-07 53.1 1.7 23 118-140 9-31 (183)
383 4dhe_A Probable GTP-binding pr 95.6 0.0019 6.4E-08 57.0 -0.1 24 118-141 30-53 (223)
384 3h4m_A Proteasome-activating n 95.6 0.0041 1.4E-07 57.3 2.1 28 115-142 49-76 (285)
385 4djt_A GTP-binding nuclear pro 95.6 0.0046 1.6E-07 54.3 2.4 23 119-141 13-35 (218)
386 3bwd_D RAC-like GTP-binding pr 95.6 0.0046 1.6E-07 52.2 2.3 23 118-140 9-31 (182)
387 2cjw_A GTP-binding protein GEM 95.6 0.0043 1.5E-07 54.0 2.1 22 119-140 8-29 (192)
388 2qu8_A Putative nucleolar GTP- 95.6 0.004 1.4E-07 55.5 2.0 24 117-140 29-52 (228)
389 2dby_A GTP-binding protein; GD 95.6 0.0037 1.3E-07 61.2 1.9 23 119-141 3-25 (368)
390 1e4v_A Adenylate kinase; trans 95.6 0.0043 1.5E-07 55.0 2.1 24 119-142 2-25 (214)
391 4bas_A ADP-ribosylation factor 95.6 0.0039 1.3E-07 53.6 1.8 26 117-142 17-42 (199)
392 3i8s_A Ferrous iron transport 95.6 0.004 1.4E-07 58.0 2.0 23 119-141 5-27 (274)
393 3be4_A Adenylate kinase; malar 95.6 0.0043 1.5E-07 55.3 2.1 26 117-142 5-30 (217)
394 1jwy_B Dynamin A GTPase domain 95.6 0.004 1.4E-07 58.3 2.0 23 119-141 26-48 (315)
395 1zj6_A ADP-ribosylation factor 95.6 0.0042 1.5E-07 53.2 2.0 24 117-140 16-39 (187)
396 2il1_A RAB12; G-protein, GDP, 95.6 0.0036 1.2E-07 54.2 1.5 23 119-141 28-50 (192)
397 1zd9_A ADP-ribosylation factor 95.6 0.0046 1.6E-07 53.2 2.1 26 116-141 21-46 (188)
398 3a1s_A Iron(II) transport prot 95.6 0.0044 1.5E-07 57.3 2.1 24 119-142 7-30 (258)
399 3cph_A RAS-related protein SEC 95.5 0.0046 1.6E-07 53.8 2.1 25 117-141 20-44 (213)
400 2p5s_A RAS and EF-hand domain 95.5 0.0047 1.6E-07 53.6 2.1 27 115-141 26-52 (199)
401 1l8q_A Chromosomal replication 95.5 0.0047 1.6E-07 58.3 2.3 26 117-142 37-62 (324)
402 2r62_A Cell division protease 95.5 0.0022 7.6E-08 58.6 0.0 31 110-142 39-69 (268)
403 2atv_A RERG, RAS-like estrogen 95.5 0.0048 1.6E-07 53.4 2.1 23 118-140 29-51 (196)
404 2fv8_A H6, RHO-related GTP-bin 95.5 0.0045 1.5E-07 54.2 1.9 32 110-141 18-49 (207)
405 3d3q_A TRNA delta(2)-isopenten 95.5 0.005 1.7E-07 59.8 2.3 25 118-142 8-32 (340)
406 2o52_A RAS-related protein RAB 95.5 0.0045 1.5E-07 54.0 1.8 24 118-141 26-49 (200)
407 1sky_E F1-ATPase, F1-ATP synth 95.5 0.0043 1.5E-07 62.8 1.8 31 112-142 146-176 (473)
408 3l0i_B RAS-related protein RAB 95.5 0.0042 1.4E-07 54.0 1.5 23 118-140 34-56 (199)
409 1ltq_A Polynucleotide kinase; 95.5 0.0051 1.7E-07 57.3 2.2 23 118-140 3-25 (301)
410 3gj0_A GTP-binding nuclear pro 95.5 0.0078 2.7E-07 53.1 3.3 25 118-142 16-41 (221)
411 2z43_A DNA repair and recombin 95.5 0.0054 1.8E-07 58.5 2.4 29 113-141 103-131 (324)
412 2h92_A Cytidylate kinase; ross 95.5 0.0048 1.6E-07 54.6 1.9 26 117-142 3-28 (219)
413 2qmh_A HPR kinase/phosphorylas 95.4 0.0067 2.3E-07 54.7 2.7 31 110-141 28-58 (205)
414 2fh5_B SR-beta, signal recogni 95.4 0.0055 1.9E-07 53.6 2.1 23 119-141 9-31 (214)
415 2aka_B Dynamin-1; fusion prote 95.4 0.0053 1.8E-07 56.9 2.1 23 119-141 28-50 (299)
416 1h65_A Chloroplast outer envel 95.4 0.0052 1.8E-07 56.8 2.0 23 119-141 41-63 (270)
417 3def_A T7I23.11 protein; chlor 95.4 0.0053 1.8E-07 56.5 2.0 24 118-141 37-60 (262)
418 1ak2_A Adenylate kinase isoenz 95.4 0.0065 2.2E-07 54.7 2.5 27 116-142 15-41 (233)
419 3v9p_A DTMP kinase, thymidylat 95.4 0.006 2.1E-07 55.7 2.3 29 114-142 22-50 (227)
420 2f7s_A C25KG, RAS-related prot 95.4 0.0054 1.9E-07 53.8 1.9 23 119-141 27-49 (217)
421 3umf_A Adenylate kinase; rossm 95.3 0.0082 2.8E-07 54.5 3.1 33 110-142 22-54 (217)
422 2p65_A Hypothetical protein PF 95.3 0.0055 1.9E-07 51.7 1.8 27 116-142 42-68 (187)
423 2gco_A H9, RHO-related GTP-bin 95.3 0.006 2.1E-07 53.1 2.0 23 119-141 27-49 (201)
424 3a8t_A Adenylate isopentenyltr 95.3 0.007 2.4E-07 58.7 2.7 28 115-142 38-65 (339)
425 2j1l_A RHO-related GTP-binding 95.3 0.0057 1.9E-07 54.0 1.8 23 118-140 35-57 (214)
426 4edh_A DTMP kinase, thymidylat 95.3 0.0069 2.4E-07 54.6 2.4 28 115-142 4-31 (213)
427 3zvl_A Bifunctional polynucleo 95.3 0.0086 3E-07 59.2 3.2 30 112-141 253-282 (416)
428 1p5z_B DCK, deoxycytidine kina 95.2 0.0071 2.4E-07 55.5 2.4 28 115-142 22-49 (263)
429 3cnl_A YLQF, putative uncharac 95.2 0.0064 2.2E-07 56.5 2.1 25 118-142 100-124 (262)
430 2x77_A ADP-ribosylation factor 95.2 0.0054 1.9E-07 52.5 1.4 25 115-139 20-44 (189)
431 3lv8_A DTMP kinase, thymidylat 95.2 0.0069 2.3E-07 55.7 2.1 28 115-142 25-52 (236)
432 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.0081 2.8E-07 54.3 2.6 25 118-142 40-64 (262)
433 3llu_A RAS-related GTP-binding 95.2 0.0066 2.3E-07 52.6 1.9 24 119-142 22-45 (196)
434 3exa_A TRNA delta(2)-isopenten 95.2 0.008 2.7E-07 57.8 2.6 26 117-142 3-28 (322)
435 3foz_A TRNA delta(2)-isopenten 95.2 0.0076 2.6E-07 57.9 2.4 26 117-142 10-35 (316)
436 2hf9_A Probable hydrogenase ni 95.2 0.0071 2.4E-07 53.5 2.0 25 118-142 39-63 (226)
437 1njg_A DNA polymerase III subu 95.1 0.0078 2.7E-07 52.5 2.3 24 119-142 47-70 (250)
438 3crm_A TRNA delta(2)-isopenten 95.1 0.0076 2.6E-07 58.1 2.3 25 118-142 6-30 (323)
439 2b6h_A ADP-ribosylation factor 95.1 0.0077 2.6E-07 52.2 2.1 25 115-139 27-51 (192)
440 4gzl_A RAS-related C3 botulinu 95.1 0.011 3.7E-07 51.8 3.0 24 117-140 30-53 (204)
441 4dkx_A RAS-related protein RAB 95.1 0.013 4.6E-07 52.6 3.7 21 119-139 15-35 (216)
442 2ocp_A DGK, deoxyguanosine kin 95.0 0.0092 3.1E-07 53.9 2.5 26 117-142 2-27 (241)
443 2hup_A RAS-related protein RAB 95.0 0.0083 2.8E-07 52.4 2.0 24 118-141 30-53 (201)
444 4tmk_A Protein (thymidylate ki 95.0 0.0085 2.9E-07 54.1 2.1 27 116-142 2-28 (213)
445 4dcu_A GTP-binding protein ENG 95.0 0.0067 2.3E-07 60.6 1.6 23 119-141 25-47 (456)
446 3tmk_A Thymidylate kinase; pho 95.0 0.01 3.4E-07 53.8 2.5 28 115-142 3-30 (216)
447 3ld9_A DTMP kinase, thymidylat 94.9 0.01 3.5E-07 54.0 2.5 28 115-142 19-46 (223)
448 2g3y_A GTP-binding protein GEM 94.9 0.009 3.1E-07 53.5 1.9 23 118-140 38-60 (211)
449 3q3j_B RHO-related GTP-binding 94.8 0.01 3.5E-07 52.4 2.1 23 118-140 28-50 (214)
450 1sxj_D Activator 1 41 kDa subu 94.7 0.011 3.9E-07 55.7 2.3 33 110-142 49-83 (353)
451 3n70_A Transport activator; si 94.6 0.016 5.3E-07 48.4 2.7 28 115-142 22-49 (145)
452 2i1q_A DNA repair and recombin 94.6 0.0099 3.4E-07 56.3 1.6 28 113-140 94-121 (322)
453 3tqf_A HPR(Ser) kinase; transf 94.6 0.014 4.7E-07 51.6 2.2 29 110-139 10-38 (181)
454 3sr0_A Adenylate kinase; phosp 94.6 0.013 4.6E-07 52.4 2.2 24 119-142 2-25 (206)
455 1puj_A YLQF, conserved hypothe 94.6 0.014 4.8E-07 54.8 2.5 27 116-142 119-145 (282)
456 3th5_A RAS-related C3 botulinu 93.6 0.0063 2.1E-07 53.0 0.0 23 117-139 30-52 (204)
457 3syl_A Protein CBBX; photosynt 94.5 0.014 4.9E-07 54.2 2.4 28 115-142 65-92 (309)
458 3bh0_A DNAB-like replicative h 94.5 0.011 3.7E-07 56.3 1.5 35 107-141 58-92 (315)
459 2z4s_A Chromosomal replication 94.5 0.013 4.3E-07 58.5 2.0 26 117-142 130-155 (440)
460 1u94_A RECA protein, recombina 94.4 0.013 4.4E-07 57.0 1.9 30 113-142 59-88 (356)
461 2chg_A Replication factor C sm 94.4 0.015 5.1E-07 50.1 2.0 24 119-142 40-63 (226)
462 3eph_A TRNA isopentenyltransfe 94.4 0.015 5E-07 57.8 2.2 25 118-142 3-27 (409)
463 2x2e_A Dynamin-1; nitration, h 94.3 0.014 4.6E-07 56.3 1.9 23 119-141 33-55 (353)
464 3dm5_A SRP54, signal recogniti 94.3 0.021 7.2E-07 57.3 3.3 27 116-142 99-125 (443)
465 3r7w_A Gtpase1, GTP-binding pr 94.3 0.017 5.9E-07 54.5 2.4 25 116-140 2-26 (307)
466 1tue_A Replication protein E1; 94.2 0.018 6.2E-07 52.2 2.3 30 113-142 54-83 (212)
467 2zts_A Putative uncharacterize 94.2 0.014 4.7E-07 52.1 1.5 26 113-138 26-51 (251)
468 2v1u_A Cell division control p 94.2 0.018 6.1E-07 54.7 2.2 28 115-142 42-69 (387)
469 3p32_A Probable GTPase RV1496/ 94.1 0.025 8.4E-07 54.6 3.2 28 115-142 77-104 (355)
470 1d2n_A N-ethylmaleimide-sensit 94.1 0.022 7.5E-07 52.2 2.7 26 117-142 64-89 (272)
471 3hws_A ATP-dependent CLP prote 94.1 0.018 6.1E-07 55.4 2.2 26 117-142 51-76 (363)
472 2hjg_A GTP-binding protein ENG 94.1 0.015 5.2E-07 57.7 1.6 23 119-141 5-27 (436)
473 3uk6_A RUVB-like 2; hexameric 94.0 0.029 9.8E-07 53.4 3.5 28 115-142 68-95 (368)
474 3ec1_A YQEH GTPase; atnos1, at 94.0 0.017 5.9E-07 56.2 1.9 27 116-142 161-187 (369)
475 2orw_A Thymidine kinase; TMTK, 94.0 0.025 8.6E-07 49.5 2.8 26 116-141 2-28 (184)
476 4b4t_K 26S protease regulatory 94.0 0.018 6.1E-07 57.5 2.0 31 110-142 201-231 (428)
477 3t15_A Ribulose bisphosphate c 94.0 0.024 8E-07 53.2 2.7 24 119-142 38-61 (293)
478 1ofh_A ATP-dependent HSL prote 94.0 0.02 6.9E-07 52.8 2.2 25 118-142 51-75 (310)
479 1xwi_A SKD1 protein; VPS4B, AA 93.9 0.023 7.9E-07 54.1 2.6 27 116-142 44-70 (322)
480 4b4t_L 26S protease subunit RP 93.9 0.018 6.3E-07 57.6 1.9 31 110-142 210-240 (437)
481 3h2y_A GTPase family protein; 93.9 0.018 6.2E-07 56.1 1.8 27 116-142 159-185 (368)
482 3co5_A Putative two-component 93.9 0.019 6.5E-07 47.8 1.7 25 117-141 27-51 (143)
483 4b4t_M 26S protease regulatory 93.8 0.02 6.8E-07 57.3 1.9 31 110-142 210-240 (434)
484 4hlc_A DTMP kinase, thymidylat 93.7 0.027 9.3E-07 50.3 2.5 26 117-142 2-27 (205)
485 1wxq_A GTP-binding protein; st 93.7 0.021 7.3E-07 56.3 1.8 23 119-141 2-24 (397)
486 3gmt_A Adenylate kinase; ssgci 93.6 0.027 9.3E-07 51.6 2.3 25 118-142 9-33 (230)
487 3geh_A MNME, tRNA modification 93.6 0.026 8.8E-07 56.8 2.3 26 116-141 223-248 (462)
488 4b4t_J 26S protease regulatory 93.6 0.023 8E-07 56.3 1.9 31 110-142 177-207 (405)
489 3eie_A Vacuolar protein sortin 93.5 0.031 1.1E-06 52.9 2.6 26 117-142 51-76 (322)
490 1m8p_A Sulfate adenylyltransfe 93.5 0.03 1E-06 57.8 2.7 28 115-142 394-421 (573)
491 2qpt_A EH domain-containing pr 93.5 0.025 8.7E-07 58.1 2.1 25 117-141 65-89 (550)
492 1g8f_A Sulfate adenylyltransfe 93.4 0.026 9.1E-07 57.5 2.1 28 115-142 393-420 (511)
493 1f5n_A Interferon-induced guan 93.4 0.026 8.9E-07 58.6 1.9 26 116-141 37-62 (592)
494 2q6t_A DNAB replication FORK h 93.4 0.032 1.1E-06 55.4 2.5 36 107-142 190-225 (444)
495 3io5_A Recombination and repai 93.3 0.04 1.4E-06 53.2 3.0 29 113-142 25-54 (333)
496 3d8b_A Fidgetin-like protein 1 93.3 0.033 1.1E-06 53.6 2.4 27 116-142 116-142 (357)
497 4b4t_H 26S protease regulatory 93.2 0.026 8.7E-07 57.0 1.6 31 110-142 238-268 (467)
498 1um8_A ATP-dependent CLP prote 93.2 0.032 1.1E-06 53.7 2.2 25 118-142 73-97 (376)
499 3pfi_A Holliday junction ATP-d 93.2 0.032 1.1E-06 52.6 2.1 24 119-142 57-80 (338)
500 1x6v_B Bifunctional 3'-phospho 93.2 0.035 1.2E-06 58.0 2.6 27 116-142 51-77 (630)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.9e-46 Score=366.01 Aligned_cols=218 Identities=13% Similarity=0.148 Sum_probs=178.3
Q ss_pred HhhhccccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 79 RTRIGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 79 ~~~~~~~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
.+..+++|+++||+++|+.+. ..++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|
T Consensus 18 ~~~~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G 89 (366)
T 3tui_C 18 DDDDKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDG 89 (366)
T ss_dssp -----CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETT
T ss_pred CCCCCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECC
Confidence 344667999999999997432 2457 556999999999999999999999999999999999 9999999999
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
+++.... ...+...+..++||||++.+++. ++.+|+.++.... ..++.+.++++.++++.+||.+
T Consensus 90 ~~i~~~~------------~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~- 155 (366)
T 3tui_C 90 QELTTLS------------ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD- 155 (366)
T ss_dssp EECSSCC------------HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGG-
T ss_pred EECCcCC------------HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-
Confidence 9885100 01122345679999999988877 9999999876432 2344566788999999999988
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
+++++|.+||||||||++||||| ||||++||+ |+|||+
T Consensus 156 ----------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 156 ----------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp ----------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred ----------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 46999999999999999999999 999999753 899999
Q ss_pred EEc--CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 291 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 291 iTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
||| +.+..+||||+ +|++|++++.|++++++..|.+++++.++.
T Consensus 220 vTHdl~~~~~~aDrv~-vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~ 265 (366)
T 3tui_C 220 ITHEMDVVKRICDCVA-VISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265 (366)
T ss_dssp EESCHHHHHHHCSEEE-EEETTEEEECCBHHHHHSSCCSHHHHHHHH
T ss_pred EecCHHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 999 56778999996 599999999999999999988766655544
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.1e-45 Score=359.96 Aligned_cols=204 Identities=13% Similarity=0.178 Sum_probs=173.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+++|++. ++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~i~~ls~~y~~~---~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~ 71 (359)
T 3fvq_A 3 AALHIGHLSKSFQNT---PV---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSK 71 (359)
T ss_dssp CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESS
T ss_pred cEEEEEeEEEEECCE---EE---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 379999999999753 56 666999999999999999999999999999999999 9999999999887310
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......++.++||||++.+|+. ++.+|+.+++... ...+.+.++++.++++.++|.+
T Consensus 72 -------------~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 130 (359)
T 3fvq_A 72 -------------NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISE------- 130 (359)
T ss_dssp -------------SCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGG-------
T ss_pred -------------ccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCch-------
Confidence 01122335679999999999887 9999999987532 2345666788999999999988
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 131 ----------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 131 ----------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
++..+||||+ +|++|++++.|++++++..|...++
T Consensus 201 ea~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~~ 235 (359)
T 3fvq_A 201 EALQYADRIA-VMKQGRILQTASPHELYRQPADLDA 235 (359)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSCHHH
T ss_pred HHHHHCCEEE-EEECCEEEEEeCHHHHHhCcccHHH
Confidence 7889999996 5999999999999999988865443
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.8e-45 Score=363.50 Aligned_cols=204 Identities=12% Similarity=0.161 Sum_probs=175.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||+++|++ .++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~yg~---~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~- 69 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND- 69 (381)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEeEEEEECC---EEE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC-
Confidence 46999999999975 356 666999999999999999999999999999999999 999999999998751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ..++.++||||++.+++. ++.+||.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~--~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 125 (381)
T 3rlf_A 70 --------------TP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH------- 125 (381)
T ss_dssp --------------CC--GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred --------------CC--HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 11 123458999999999988 9999999986532 2344566788999999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 126 ----------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 126 ----------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp ----------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred ----------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
++..+||||+ +|++|++++.|++++++..|.+.+++.++
T Consensus 196 ea~~~aDri~-vl~~G~i~~~g~~~~l~~~p~~~~v~~~~ 234 (381)
T 3rlf_A 196 EAMTLADKIV-VLDAGRVAQVGKPLELYHYPADRFVAGFI 234 (381)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred HHHHhCCEEE-EEECCEEEEEeCHHHHHhCCccHHHHHhc
Confidence 7889999996 59999999999999999988766554444
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5.6e-44 Score=340.47 Aligned_cols=201 Identities=12% Similarity=0.202 Sum_probs=166.2
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||+++|+++. .+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 5 ~~~l~i~~ls~~y~~~~--~~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~ 74 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGT--HA---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDY 74 (275)
T ss_dssp CEEEEEEEEEEECTTSC--EE---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCC
T ss_pred CcEEEEEEEEEEECCCC--eE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCc
Confidence 35799999999997543 35 666999999999999999999999999999999999 999999999988730
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .......+..+++|||++. ++..++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 75 ~-------------~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~----- 135 (275)
T 3gfo_A 75 S-------------RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM-KLPEDEIRKRVDNALKRTGIEH----- 135 (275)
T ss_dssp S-------------HHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred c-------------cccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 0 1112234567899999873 44448999998875421 2334556778899999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||+ |+|||+|||
T Consensus 136 ------------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 136 ------------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred ------------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 56999999999999999999999 999999753 889999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
+.+..+|||++ +|++|++++.|++++++..+
T Consensus 204 l~~~~~~~drv~-~l~~G~i~~~g~~~~~~~~~ 235 (275)
T 3gfo_A 204 IDIVPLYCDNVF-VMKEGRVILQGNPKEVFAEK 235 (275)
T ss_dssp CSSGGGGCSEEE-EEETTEEEEEECHHHHTHHH
T ss_pred HHHHHHhCCEEE-EEECCEEEEECCHHHHhcCH
Confidence 57778999996 59999999999999988753
No 5
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.8e-43 Score=350.08 Aligned_cols=204 Identities=15% Similarity=0.168 Sum_probs=166.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
|.+|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 M~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFGNF---TA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEECCE---EE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 4469999999999752 46 666999999999999999999999999999999999 999999999988751
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
.. ..++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 78 ---------------~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------ 133 (372)
T 1v43_A 78 ---------------LP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------ 133 (372)
T ss_dssp ---------------SC--GGGGTEEEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG------
T ss_pred ---------------CC--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh------
Confidence 11 123468999999999988 9999999986532 2233455678899999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
+++++|.+||||||||++||||| |||+++||. |+|+|+|||
T Consensus 134 -----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 134 -----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp -----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 56999999999999999999999 999999763 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+++..+|||++ +|++|++++.|++++++..|...++..+
T Consensus 203 ~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~a~~ 241 (372)
T 1v43_A 203 VEAMTMGDRIA-VMNRGQLLQIGSPTEVYLRPNSVFVATF 241 (372)
T ss_dssp HHHHHHCSEEE-EEETTEEEEEECHHHHHHCCSBHHHHHH
T ss_pred HHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHH
Confidence 57789999996 5999999999999999988765444333
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.6e-44 Score=351.15 Aligned_cols=203 Identities=14% Similarity=0.204 Sum_probs=171.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~-- 68 (362)
T 2it1_A 2 VEIKLENIVKKFGNF---TA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVT-- 68 (362)
T ss_dssp CCEEEEEEEEESSSS---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT--
T ss_pred cEEEEEeEEEEECCE---EE---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECC--
Confidence 368999999999653 45 666999999999999999999999999999999999 99999999998875
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
... ..++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 69 -------------~~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 125 (362)
T 2it1_A 69 -------------ELP--PKDRNVGLVFQNWALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDK------- 125 (362)
T ss_dssp -------------TSC--GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT-------
T ss_pred -------------cCC--HhHCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111 123568999999988887 9999999876421 2233455678899999999988
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 126 ----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 126 ----------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp ----------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
++..+||||+ +|++|++++.|++++++..|...++..+
T Consensus 196 ~a~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~~~~ 233 (362)
T 2it1_A 196 EALAMADRIA-VIREGEILQVGTPDEVYYKPKYKFVGGF 233 (362)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHH
Confidence 7789999996 5999999999999999988765443333
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9.5e-44 Score=350.51 Aligned_cols=203 Identities=13% Similarity=0.187 Sum_probs=170.8
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 69 (359)
T 2yyz_A 2 PSIRVVNLKKYFGKV---KA---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND- 69 (359)
T ss_dssp CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred cEEEEEEEEEEECCE---EE---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC-
Confidence 368999999999752 46 666999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. ..++.++||||++.+|+. ++.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 70 --------------~~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 125 (359)
T 2yyz_A 70 --------------IP--PKYREVGMVFQNYALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN------- 125 (359)
T ss_dssp --------------SC--GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG-------
T ss_pred --------------CC--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 11 123568999999988887 9999999976421 1222344677889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 126 ----------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 126 ----------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
++..+|||++ +|++|++++.|++++++..|...+++.+
T Consensus 196 ~~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 233 (359)
T 2yyz_A 196 EAMTMASRIA-VFNQGKLVQYGTPDEVYDSPKNMFVASF 233 (359)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHHHHH
T ss_pred HHHHhCCEEE-EEECCEEEEeCCHHHHHhCcccHHHHHH
Confidence 7788999996 5999999999999999988865444333
No 8
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.6e-44 Score=350.22 Aligned_cols=208 Identities=14% Similarity=0.225 Sum_probs=172.0
Q ss_pred cccccccceeeecCcceee--ccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 84 SLTDAKNKILSYTPGAWIE--NVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~--~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+|+++||+++|++. + + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~~l~i~~l~~~y~~~---~~~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKG---KVVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVA 70 (353)
T ss_dssp CCEEEEEEEEEEGGG---TEEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEE
T ss_pred cEEEEEeEEEEECCE---eeee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECc
Confidence 468999999999753 3 6 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
... .......++.++||||++.+|+. ++.+|+.++.... ..++++.++++.++++.++|.+
T Consensus 71 ~~~------------~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~----- 132 (353)
T 1oxx_K 71 SNG------------KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH----- 132 (353)
T ss_dssp ETT------------EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred ccc------------cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 100 00112234668999999988887 9999999976421 2233455678899999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 133 ------------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 133 ------------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56999999999999999999999 999999764 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCch
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 333 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~ 333 (361)
+++..+|||++ +|++|++++.|++++++..|...+++.+
T Consensus 201 ~~~~~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 240 (353)
T 1oxx_K 201 PADIFAIADRVG-VLVKGKLVQVGKPEDLYDNPVSIQVASL 240 (353)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHH
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCcccHHHHHh
Confidence 57789999996 5999999999999999988765444333
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-43 Score=348.99 Aligned_cols=206 Identities=14% Similarity=0.165 Sum_probs=173.0
Q ss_pred hccccccccceeee-cCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 82 IGSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 82 ~~~~lei~nl~~~Y-~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
..++|+++||+++| ++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 11 ~~~~l~~~~l~~~y~g~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 79 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGA---RS---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRV 79 (355)
T ss_dssp CCEEEEEEEEEECCTTST---TC---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEEEEEEEcCCC---EE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEEC
Confidence 34579999999999 543 45 666999999999999999999999999999999999 9999999999887
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 239 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~ 239 (361)
.. . ...++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 80 ~~---------------~--~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~---- 137 (355)
T 1z47_A 80 TD---------------L--PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLES---- 137 (355)
T ss_dssp TT---------------C--CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGG----
T ss_pred Cc---------------C--ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh----
Confidence 51 1 1234568999999998887 9999999876421 2233455678899999999987
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH 293 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+|||
T Consensus 138 -------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 204 (355)
T 1z47_A 138 -------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204 (355)
T ss_dssp -------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred -------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 56999999999999999999999 999999763 899999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchh
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
+++..+|||++ +|++|++++.|++++++..|...+++.++
T Consensus 205 d~~~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 205 DQEEALEVADRVL-VLHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp CHHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred CHHHHHHhCCEEE-EEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 57789999996 59999999999999999887654443333
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.8e-43 Score=350.18 Aligned_cols=206 Identities=13% Similarity=0.171 Sum_probs=170.0
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~ 70 (372)
T 1g29_1 2 AGVRLVDVWKVFGEV---TA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADP 70 (372)
T ss_dssp EEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEG
T ss_pred CEEEEEeEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccc
Confidence 368999999999652 46 666999999999999999999999999999999999 9999999999876410
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.. .......++.++||||++.+|+. ++.+|+.+++... ..++.+.++++.++++.++|.+
T Consensus 71 ----~~-------~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 131 (372)
T 1g29_1 71 ----EK-------GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE------- 131 (372)
T ss_dssp ----GG-------TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG-------
T ss_pred ----cc-------cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch-------
Confidence 00 00011224568999999988887 9999999876421 2233455678889999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| +
T Consensus 132 ----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 132 ----------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp ----------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 56999999999999999999999 999999763 899999999 5
Q ss_pred ccccccchhhHhhhhhhhcCCCCccccccCCCCCCC
Q 018083 295 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDP 330 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~ 330 (361)
++..+|||++ +|++|++++.|++++++..|...++
T Consensus 202 ~a~~~adri~-vl~~G~i~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 202 EAMTMGDRIA-VMNRGVLQQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp HHHHHCSEEE-EEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHhCCEEE-EEeCCEEEEeCCHHHHHhCcccHHH
Confidence 7788999996 5999999999999999988765443
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3e-43 Score=340.23 Aligned_cols=221 Identities=13% Similarity=0.177 Sum_probs=169.4
Q ss_pred hhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhh
Q 018083 64 RDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 135 (361)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~ 135 (361)
...|+.++++..++.... ..+.|+++||+|+|+++. ++ |++|||+|++|++++|+||||||||||++
T Consensus 24 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~--~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 24 DMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGR--ET---LQDVSFTVMPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp CHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTC--EE---EEEEEEEECTTCEEEEESSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCC--ce---eeeeeEEEcCCCEEEEECCCCchHHHHHH
Confidence 355999999877654221 123599999999997543 45 66699999999999999999999999999
Q ss_pred hhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecC
Q 018083 136 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 215 (361)
Q Consensus 136 ~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~ 215 (361)
+|+|+++ |++|+|.++|+++. .+.....+..++||+|++.+|..+|.+||.++...
T Consensus 99 ll~gl~~-----p~~G~I~i~G~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~---- 154 (306)
T 3nh6_A 99 LLFRFYD-----ISSGCIRIDGQDIS---------------QVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT---- 154 (306)
T ss_dssp HHTTSSC-----CSEEEEEETTEETT---------------SBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT----
T ss_pred HHHcCCC-----CCCcEEEECCEEcc---------------cCCHHHHhcceEEEecCCccCcccHHHHHHhhccc----
Confidence 9999999 99999999999986 34445567789999999998877999999987531
Q ss_pred CChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--
Q 018083 216 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 284 (361)
Q Consensus 216 ~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-- 284 (361)
...+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||.
T Consensus 155 ---~~~~~~~~~~~~~~l~~~i~~lp~gl------~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~ 225 (306)
T 3nh6_A 155 ---AGNDEVEAAAQAAGIHDAIMAFPEGY------RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225 (306)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHSTTGG------GCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred ---CCHHHHHHHHHHhCcHHHHHhccchh------hhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 11234555566665544210000000 0022456679999999999999999 999999763
Q ss_pred -------------CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 -------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 -------------g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
++|+|+||| ..+. .||||+ +|++|+|++.|++++++..
T Consensus 226 ~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~aD~i~-vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 226 ERAIQASLAKVCANRTTIVVAHRLSTVV-NADQIL-VIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCSHHHHH-TCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEcChHHHH-cCCEEE-EEECCEEEEECCHHHHHhc
Confidence 899999999 3444 499996 6999999999999998764
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.9e-43 Score=326.34 Aligned_cols=197 Identities=19% Similarity=0.196 Sum_probs=157.6
Q ss_pred ccccccceeeecCcc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++||+++|+.+. ..++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~- 71 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTND- 71 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT-
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEccc-
Confidence 478999999997432 1346 666999999999999999999999999999999999 999999999988751
Q ss_pred eEeEeeeecCCCcceeee---ec-CCCCcccccchHHHHH-HHHhccccceeEE--ecCCChhhhhhhcccccccCCCcc
Q 018083 164 YFLQEYTIPRGSNSFSLY---DT-RSLSDDASDNINMIKL-WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~---d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
+... .. +..++||||++.+++. ++.+|+.++.... ......+..+++.++++.+++.+.
T Consensus 72 --------------~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 72 --------------LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp --------------CCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred --------------CCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 1111 11 2358899999988877 9999998764321 112234556778889999999762
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIi 290 (361)
.+++++.+||||||||++||||| ||||++||. |+|||+
T Consensus 138 ----------------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 201 (235)
T 3tif_A 138 ----------------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201 (235)
T ss_dssp ----------------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred ----------------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 24889999999999999999999 999999753 899999
Q ss_pred EEcC-ccccccchhhHhhhhhhhcCCCCcccc
Q 018083 291 VTHG-DLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 291 iTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
|||+ .+..+|||++ +|++|++++.++++++
T Consensus 202 vtHd~~~~~~~d~i~-~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 202 VTHDINVARFGERII-YLKDGEVEREEKLRGF 232 (235)
T ss_dssp ECSCHHHHTTSSEEE-EEETTEEEEEEECC--
T ss_pred EcCCHHHHHhCCEEE-EEECCEEEEEcChhhh
Confidence 9992 3558999996 5999999998887665
No 13
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.1e-43 Score=345.55 Aligned_cols=200 Identities=14% Similarity=0.182 Sum_probs=169.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
||+++|++++|++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~----~---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF----S---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC----E---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE----E---EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 47899999999652 4 777999999999999999999999999999999999 999999999988751
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
....++.++||||++.+|+. ++.+|+.++.... ..++. +++.++++.++|.+
T Consensus 67 ---------------~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~-~~~~~---~~v~~~l~~~~L~~-------- 119 (348)
T 3d31_A 67 ---------------LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK-KIKDP---KRVLDTARDLKIEH-------- 119 (348)
T ss_dssp ---------------SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH-CCCCH---HHHHHHHHHTTCTT--------
T ss_pred ---------------CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc-CCCHH---HHHHHHHHHcCCch--------
Confidence 11224568999999988887 9999999876421 11222 67888999999988
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
+++++|.+||||||||++||||| ||||++||. |+|+|+||| ++
T Consensus 120 ---------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 120 ---------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp ---------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56999999999999999999999 999999753 899999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+..+|||++ +|++|++++.|++++++..|...+++.++.
T Consensus 191 ~~~~adri~-vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 191 ARIMADRIA-VVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHHCSEEE-EESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 789999996 599999999999999999887665544443
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-43 Score=334.56 Aligned_cols=202 Identities=15% Similarity=0.202 Sum_probs=163.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 23 ~~l~i~~l~~~y~~~---~v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~- 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGSL---EV---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLKA- 90 (263)
T ss_dssp CSEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESSS-
T ss_pred heEEEEeEEEEECCE---EE---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECCC-
Confidence 479999999999652 45 666999999999999999999999999999999999 999999999987630
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. .......+..++||+|++.+++. ++.+|+.++............++++.++++.+++.+
T Consensus 91 ~------------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------- 151 (263)
T 2olj_A 91 K------------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 151 (263)
T ss_dssp T------------TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred c------------cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-------
Confidence 0 01111223457889998877776 899999875311111222344567888999999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--Cc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 295 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 152 ----------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 152 ----------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 45899999999999999999999 999999753 899999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+..+||+++ +|++|++++.|++++++..+..
T Consensus 222 ~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
T 2olj_A 222 AREVGDRVL-FMDGGYIIEEGKPEDLFDRPQH 252 (263)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSCCS
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHhCccc
Confidence 778999996 5999999999999988876543
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.5e-42 Score=325.52 Aligned_cols=194 Identities=13% Similarity=0.148 Sum_probs=160.5
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF---KA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETTE---EE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECCE---ee---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 4579999999999753 46 666999999999999999999999999999999999 999999999987641
Q ss_pred ceEeEeeeecCCCcceee-eecCCCCcccccchHHHHH-HHHhccccceeE-Eec-----------CCChhhhhhhcccc
Q 018083 163 TYFLQEYTIPRGSNSFSL-YDTRSLSDDASDNINMIKL-WIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKA 228 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~-~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~-~~~-----------~~~~~~~~~v~~~l 228 (361)
... ...+..+++|+|++.+++. ++.+|+.++... ... ......++++.+++
T Consensus 74 ---------------~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 138 (257)
T 1g6h_A 74 ---------------KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138 (257)
T ss_dssp ---------------CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred ---------------CCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHH
Confidence 110 1123458899999888776 999999886432 001 12344556788899
Q ss_pred cccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------
Q 018083 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 284 (361)
Q Consensus 229 ~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------------- 284 (361)
+.+++.+ ++++++.+||||||||++||||| ||||++||.
T Consensus 139 ~~~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 201 (257)
T 1g6h_A 139 EFLKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201 (257)
T ss_dssp HHTTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 9999987 45899999999999999999999 999999753
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhhhcCCCCccc
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 320 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~ 320 (361)
|+|||++|| +.+..+|||++ +|++|+++..|++++
T Consensus 202 ~g~tvi~vtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 202 KGITFLIIEHRLDIVLNYIDHLY-VMFNGQIIAEGRGEE 239 (257)
T ss_dssp TTCEEEEECSCCSTTGGGCSEEE-EEETTEEEEEEESHH
T ss_pred CCCEEEEEecCHHHHHHhCCEEE-EEECCEEEEEeCHHH
Confidence 899999999 56778999996 599999999888887
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.4e-42 Score=319.68 Aligned_cols=199 Identities=17% Similarity=0.211 Sum_probs=164.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|++ + |+++||+|++ ++++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4789999999964 3 6779999999 9999999999999999999999999 999999999987641
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
....+..++|++|++.+++. ++.+|+.++.... .....++++.++++.+++.+
T Consensus 65 ---------------~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~-------- 118 (240)
T 2onk_A 65 ---------------LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAH-------- 118 (240)
T ss_dssp ---------------SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTT--------
T ss_pred ---------------CchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHH--------
Confidence 11234568999999888776 8999998865311 11122567888999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 119 ---------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 119 ---------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp ---------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45899999999999999999999 999999753 899999999 46
Q ss_pred cccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhhh
Q 018083 296 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 336 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~~ 336 (361)
+..+||+++ +|++|+++..|++++++..+ ..++..++..
T Consensus 190 ~~~~~d~i~-~l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~ 228 (240)
T 2onk_A 190 AAMLADEVA-VMLNGRIVEKGKLKELFSAK-NGEVAEFLSA 228 (240)
T ss_dssp HHHHCSEEE-EEETTEEEEEECHHHHHHSC-CSSHHHHGGG
T ss_pred HHHhCCEEE-EEECCEEEEECCHHHHHhCc-hHHHHHHhcC
Confidence 778999996 59999999999999998876 5554444433
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-43 Score=332.76 Aligned_cols=211 Identities=17% Similarity=0.122 Sum_probs=163.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++||+++|+.. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 5 ~~l~i~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH---EV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECCE---EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 479999999999752 45 666999999999999999999999999999999999 9999999999876400
Q ss_pred eEeEe--eeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 164 YFLQE--YTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~--~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
..... .... .......+..+++|||++.+++. ++.+|+.++.......+....++++.++++.+++.+
T Consensus 74 ~~~~~~~~~~~----~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----- 144 (262)
T 1b0u_A 74 RDKDGQLKVAD----KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE----- 144 (262)
T ss_dssp ECTTSSEEESC----HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-----
T ss_pred ccccccccccC----hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-----
Confidence 00000 0000 00011223457889999877776 899999875311111222344567888999999987
Q ss_pred EEEEEEEEechhh-hhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~-~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
+ +++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 145 ------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 145 ------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp ------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred ------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5 6899999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+.+..+|||++ +|++|++++.|++++++..+..
T Consensus 213 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 246 (262)
T 1b0u_A 213 MGFARHVSSHVI-FLHQGKIEEEGDPEQVFGNPQS 246 (262)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEECHHHHHHSCCS
T ss_pred HHHHHHhCCEEE-EEECCEEEEeCCHHHHHhCcch
Confidence 46778999996 5999999999999999876644
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.7e-42 Score=325.55 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=161.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|+++.|++. ++ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~---~v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQ---AL---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCCe---eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 3579999999999763 56 666999999999999999999999999999999999 999999999998751
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
......+..+++++|++.+++. ++.+|+.++... ......++++.++++.+++.+
T Consensus 78 ---------------~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~l~~~~l~~------ 133 (266)
T 4g1u_C 78 ---------------WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP---YGGSQDRQALQQVMAQTDCLA------ 133 (266)
T ss_dssp ---------------SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTT---SCSTTHHHHHHHHHHHTTCST------
T ss_pred ---------------CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhh---cCcHHHHHHHHHHHHHcCChh------
Confidence 1222233446788888766444 889999886542 123455677888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------------CCCceeecC-----------------CccEE
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVV 289 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~~-----------------g~tvI 289 (361)
++++++.+||||||||++||||| ||||++||. ++|||
T Consensus 134 -----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi 202 (266)
T 4g1u_C 134 -----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202 (266)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45899999999999999999997 999999763 57999
Q ss_pred EEEc--CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 290 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 290 iiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+||| +.+..+|||++ +|++|++++.|++++++..
T Consensus 203 ~vtHdl~~~~~~~d~v~-vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 203 CVLHDLNLAALYADRIM-LLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp EECSCHHHHHHHCSEEE-EEETTEEEEEECHHHHCCH
T ss_pred EEEcCHHHHHHhCCEEE-EEECCEEEEEcCHHHHhCc
Confidence 9999 56778999996 5999999999999888653
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-42 Score=319.67 Aligned_cols=195 Identities=14% Similarity=0.198 Sum_probs=159.4
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI---HA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECCe---eE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 3579999999999752 45 666999999999999999999999999999999999 999999999988741
Q ss_pred ceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccC-CCcceeE
Q 018083 163 TYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIR 239 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~g-l~~~~~~ 239 (361)
..... .+..++|++|++.+++. ++.+|+.++... .......++.+.++++.++ +.+
T Consensus 73 ---------------~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~---- 131 (240)
T 1ji0_A 73 ---------------KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE---- 131 (240)
T ss_dssp ---------------CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT----
T ss_pred ---------------CCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh----
Confidence 11111 13458899999887777 999999886421 1123344566778888884 876
Q ss_pred EEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc-
Q 018083 240 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 293 (361)
Q Consensus 240 ~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH- 293 (361)
.+++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 132 -------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 132 -------------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp -------------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45899999999999999999999 999999753 899999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+.+..+|||++ +|++|+++..|++++++.
T Consensus 199 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 199 ALGALKVAHYGY-VLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHHHCSEEE-EEETTEEEEEEEHHHHHT
T ss_pred HHHHHHhCCEEE-EEECCEEEEEcCHHHHhc
Confidence 46778999996 599999999998887764
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-42 Score=322.20 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=161.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~~l~i~~l~~~y~~~---~v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKK---EI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEECCE---EE---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 67899999999999752 46 666999999999999999999999999999999999 99999999998764
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. .....+..++|++|++.+++. ++.+|+.++.... .....+.++++.++++.+++.+
T Consensus 81 ~----------------~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~----- 138 (256)
T 1vpl_A 81 E----------------EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGE----- 138 (256)
T ss_dssp T----------------CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGG-----
T ss_pred c----------------cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCch-----
Confidence 1 111234568889998877766 8999998753211 1122334567888999999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-- 293 (361)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 139 ------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 139 ------------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp ------------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 45899999999999999999999 999999753 899999999
Q ss_pred CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
+.+..+||+++ +|++|+++..|++++++..
T Consensus 207 ~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 207 LEVEFLCDRIA-LIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTTCSEEE-EEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHCCEEE-EEECCEEEEecCHHHHHHh
Confidence 56778999996 5999999999998888653
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7.5e-42 Score=316.05 Aligned_cols=192 Identities=20% Similarity=0.131 Sum_probs=152.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++|+++|++++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~~---~~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRGY---EI---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECCE---ee---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 579999999999752 45 666999999999999999999999999999999999 9999999999886410
Q ss_pred eEeEeeeecCCCcceeeeecC-CCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r-~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
. .......+ ..++||+|++.+++. ++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 ~------------~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 132 (224)
T 2pcj_A 72 N------------EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGD------ 132 (224)
T ss_dssp C------------HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTT------
T ss_pred C------------HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 0 00001112 457889998877766 8899998764311 1222344567888999999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC-c
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-D 295 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~-~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||++||+ .
T Consensus 133 -----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 133 -----------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp -----------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 45899999999999999999999 999999753 8999999993 2
Q ss_pred cccccchhhHhhhhhhhcCCCC
Q 018083 296 LLSLTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 296 ~~~~aDri~vvl~~G~iv~~g~ 317 (361)
...+||+++ +|++|++++.|+
T Consensus 202 ~~~~~d~v~-~l~~G~i~~~g~ 222 (224)
T 2pcj_A 202 LAELTHRTL-EMKDGKVVGEIT 222 (224)
T ss_dssp HHTTSSEEE-EEETTEEEEEEE
T ss_pred HHHhCCEEE-EEECCEEEEEee
Confidence 238899996 599999987764
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-41 Score=319.19 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=160.5
Q ss_pred ccccccceeeec-Ccc-eeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 85 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 85 ~lei~nl~~~Y~-~~~-~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
+|+++||+++|+ ++. ..++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~- 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKK- 72 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECC-
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECc-
Confidence 589999999997 221 0145 666999999999999999999999999999999999 99999999998764
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccch-HH-HHHHHHhccccceeEEecCCChhhhhhhcccccccCCC--ccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NM-IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~--~~~~ 238 (361)
.. ..+..++||+|++ .. +..++.+|+.++.... ......++++.++++.+++. +
T Consensus 73 --------------~~---~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~--- 130 (266)
T 2yz2_A 73 --------------GY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS--- 130 (266)
T ss_dssp --------------HH---HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH---
T ss_pred --------------hH---HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc---
Confidence 11 3345688899985 33 3348999998764311 22234456788899999998 7
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 293 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH 293 (361)
++++++.+||||||||++||||| ||||++||. |+|||++||
T Consensus 131 --------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtH 196 (266)
T 2yz2_A 131 --------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196 (266)
T ss_dssp --------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred --------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45899999999999999999999 999999753 899999999
Q ss_pred --CccccccchhhHhhhhhhhcCCCCccccccCCCC
Q 018083 294 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 294 --~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~ 327 (361)
+.+..+||+++ +|++|+++..|++++++..+..
T Consensus 197 d~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 197 DIETVINHVDRVV-VLEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CCTTTGGGCSEEE-EEETTEEEEEEEHHHHHHHSCC
T ss_pred CHHHHHHhCCEEE-EEECCEEEEeCCHHHHhcCccc
Confidence 56778899996 5999999999999988876654
No 23
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-40 Score=310.38 Aligned_cols=201 Identities=13% Similarity=0.152 Sum_probs=152.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++|+++. ++ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~--- 67 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE--QI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPID--- 67 (243)
T ss_dssp CEEEEEEEECSSSSS--CS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEEST---
T ss_pred CEEEEEEEEEeCCCC--ce---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhh---
Confidence 478999999994322 45 666999999999999999999999999999999999 99999999998875
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 244 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~ 244 (361)
.......+..++|++|++.+++.++.+|+.++... ....+++.++++.+++.+.+.+.++
T Consensus 68 ------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~-- 127 (243)
T 1mv5_A 68 ------------NISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG------DYTDEDLWQVLDLAFARSFVENMPD-- 127 (243)
T ss_dssp ------------TTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS------CSCHHHHHHHHHHHTCTTTTTSSTT--
T ss_pred ------------hCCHHHHHhhEEEEcCCCccccccHHHHHhhhccC------CCCHHHHHHHHHHhChHHHHHhCcc--
Confidence 12223346678999999887766999999876320 1123445566666666542100000
Q ss_pred EEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEcC-ccccc
Q 018083 245 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLSL 299 (361)
Q Consensus 245 ~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH~-~~~~~ 299 (361)
+-...+++++.+||||||||++||||| ||||++||. |+|||++||+ .....
T Consensus 128 ----gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 128 ----QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp ----GGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred ----chhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 000012456789999999999999999 999999764 8999999993 33356
Q ss_pred cchhhHhhhhhhhcCCCCcccccc
Q 018083 300 TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 300 aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|||++ +|++|++++.|++++++.
T Consensus 204 ~d~v~-~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 204 ADKIY-FIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CSEEE-EEETTEECCCSCHHHHHH
T ss_pred CCEEE-EEECCEEEEeCCHHHHHh
Confidence 99996 599999999999887765
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-40 Score=318.15 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=159.7
Q ss_pred HhhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 79 RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 79 ~~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
++...++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 15 ~~~~~~~l~~~~l~~~y~~~---~v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~ 83 (279)
T 2ihy_A 15 PRGSHMLIQLDQIGRMKQGK---TI---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGK 83 (279)
T ss_dssp ----CEEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTB
T ss_pred CCCCCceEEEEeEEEEECCE---EE---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCE
Confidence 33455679999999999753 45 666999999999999999999999999999999999 99999999998
Q ss_pred ccCcceEeEeeeecCCCcceeeeecCCCCcccccchHH-HHH--HHHhccccceeEE---ecCCChhhhhhhcccccccC
Q 018083 159 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM-IKL--WIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIG 232 (361)
Q Consensus 159 ~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l-~~~--ti~~ni~~~~~~~---~~~~~~~~~~~v~~~l~~~g 232 (361)
++... .....+.+..++|++|++.+ +.. ++.+|+.++.... ......+..+++.++++.++
T Consensus 84 ~~~~~-------------~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 150 (279)
T 2ihy_A 84 MPGKV-------------GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG 150 (279)
T ss_dssp CCC----------------CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTT
T ss_pred Ecccc-------------cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcC
Confidence 76300 01112235668999999864 322 8999998864321 11123344567888999999
Q ss_pred CCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Ccc
Q 018083 233 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 287 (361)
Q Consensus 233 l~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~t 287 (361)
+.+ ++++++.+||||||||++||||| ||||++||. |+|
T Consensus 151 l~~-----------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~t 213 (279)
T 2ihy_A 151 MSA-----------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213 (279)
T ss_dssp CGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTT
T ss_pred Chh-----------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCE
Confidence 987 45899999999999999999999 999999763 789
Q ss_pred E--EEEEc--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 288 V--VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 288 v--IiiTH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| |+||| +.+..+||+++ +|++|++++.|++++++.
T Consensus 214 v~~iivtHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 214 LAMIYVTHFIEEITANFSKIL-LLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp CEEEEEESCGGGCCTTCCEEE-EEETTEEEEEEEHHHHCS
T ss_pred EEEEEEecCHHHHHHhCCEEE-EEECCEEEEECCHHHHhc
Confidence 9 99999 56778999996 599999999998887754
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=8.6e-41 Score=313.52 Aligned_cols=202 Identities=12% Similarity=0.121 Sum_probs=152.8
Q ss_pred ccccccceeeec-CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~-~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
-++++||+++|+ ++. ++ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 7 ~~~~~~l~~~y~~~~~--~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~-- 74 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSP--VI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLA-- 74 (247)
T ss_dssp EEEEEEEEEESSTTSC--EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT--
T ss_pred ceeEEEEEEEeCCCCc--ce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhh--
Confidence 478999999993 232 45 666999999999999999999999999999999999 99999999998875
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++||+|++.+++.++.+|+.++.. ....+++.++++.+++.+.+.+.++
T Consensus 75 -------------~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~- 133 (247)
T 2ff7_A 75 -------------LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-------GMSVEKVIYAAKLAGAHDFISELRE- 133 (247)
T ss_dssp -------------TSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT-------TCCHHHHHHHHHHHTCHHHHHTSTT-
T ss_pred -------------hCCHHHHHhcEEEEeCCCccccccHHHHHhccCC-------CCCHHHHHHHHHHhChHHHHHhCcc-
Confidence 1122223456889999988776699999987632 1123445566777776541100000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Ccccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLS 298 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~~ 298 (361)
+-...+++++.+||||||||++||||| ||||++||. |+|||++|| .....
T Consensus 134 -----gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 134 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp -----GGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred -----hhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 000012445689999999999999999 999999753 899999999 23335
Q ss_pred ccchhhHhhhhhhhcCCCCccccccCC
Q 018083 299 LTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
.||+++ +|++|++++.|++++++..|
T Consensus 209 ~~d~v~-~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 209 NADRII-VMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp TSSEEE-EEETTEEEEEECHHHHHTST
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 699996 59999999999999988765
No 26
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-41 Score=334.42 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=167.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.+.|+++||+++|+.+. ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 17 ~~~i~~~~l~~~y~~~~-~~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~- 85 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGG-NAI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWD- 85 (390)
T ss_dssp SCCEEEEEEEEESSSSS-CCS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTT-
T ss_pred CCeEEEEEEEEEecCCC-eEE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECC-
Confidence 35799999999995332 256 666999999999999999999999999999999985 5799999999886
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.....+.++.++||||++.+|+.++.+|+.+.. ...++++.++++.+++.+
T Consensus 86 --------------~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~--------~~~~~~v~~~l~~~~L~~------- 136 (390)
T 3gd7_A 86 --------------SITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA--------AHSDQEIWKVADEVGLRS------- 136 (390)
T ss_dssp --------------SSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTC--------CSCHHHHHHHHHHTTCHH-------
T ss_pred --------------cCChHHHhCCEEEEcCCcccCccCHHHHhhhcc--------ccCHHHHHHHHHHhCCHH-------
Confidence 223334456789999999888779999997422 123456778899999987
Q ss_pred EEEEEEechhhhhhccCC-----------chhhhhhhhhhhhcc---------CCCceeecC---------------Ccc
Q 018083 243 FVIFVVDGLAVLKSMEGD-----------SDVEKQYNQIVATTF---------NCPYLSFRD---------------DKP 287 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~-----------LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~t 287 (361)
+++++|.+ ||||||||++||||| ||||++||. ++|
T Consensus 137 ----------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 137 ----------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp ----------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred ----------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 56888888 999999999999999 999999753 889
Q ss_pred EEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCCCCCCCCchhh
Q 018083 288 VVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 335 (361)
Q Consensus 288 vIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~~~~~~~ 335 (361)
+|++|| .++...||||+ +|++|+|++.|++++++..|.+.+++.++.
T Consensus 207 vi~vtHd~e~~~~aDri~-vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFL-VIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp EEEECSSSGGGTTCSEEE-EEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred EEEEEcCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 999999 56667799996 599999999999999999987766655544
No 27
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.9e-41 Score=376.02 Aligned_cols=229 Identities=15% Similarity=0.130 Sum_probs=185.2
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
..+..|+.++++..++.... ..+.|+++||+++|+++...++ |+|+||+|++||.+|||||||||||||
T Consensus 1045 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~SGsGKSTL 1121 (1321)
T 4f4c_A 1045 TFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGPSGCGKSTV 1121 (1321)
T ss_dssp HHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECSTTSSTTSH
T ss_pred HHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECCCCChHHHH
Confidence 34455889988766554322 2236999999999975433356 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|.|+++ |++|+|.+||.|+. .+.+.++|+.+++|+|++.+|..||++||.+|..
T Consensus 1122 ~~lL~rl~~-----p~~G~I~iDG~di~---------------~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld--- 1178 (1321)
T 4f4c_A 1122 VALLERFYD-----TLGGEIFIDGSEIK---------------TLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD--- 1178 (1321)
T ss_dssp HHHHTTSSC-----CSSSEEEETTEETT---------------TBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC---
T ss_pred HHHHhcCcc-----CCCCEEEECCEEhh---------------hCCHHHHHhheEEECCCCEeeCccHHHHHhccCC---
Confidence 999999999 99999999999997 6788889999999999999999999999998753
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
+.+...+++.++++.+++.+.+...++.+.+.|+ .....||||||||+|||||| |||||+||.
T Consensus 1179 --~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg------e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1179 --PSSVTMAQVEEAARLANIHNFIAELPEGFETRVG------DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp --TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET------TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred --CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec------CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence 1234556788888988887643222222333232 33457999999999999998 999999764
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
++|+|+||| -.....||||+ ||++|+|++.|+|++++..+
T Consensus 1251 ~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~-Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1251 ESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIA-VVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp HHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEE-EESSSSEEEEECHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 899999999 45557799995 69999999999999999864
No 28
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.9e-40 Score=340.69 Aligned_cols=225 Identities=12% Similarity=0.175 Sum_probs=174.9
Q ss_pred hhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 63 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
....|+.++++.+++.... ....|+++|++++|+++. .++ |+++||+|++||+++|+||||||||||+++
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~i~l~i~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPA---LSHVSFSIPQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred HHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCC-ccc---cccceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 3455899998765432111 134699999999997531 245 566999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.++|+++. .....+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 389 l~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------ 442 (582)
T 3b5x_A 389 FTRFYD-----VDSGSICLDGHDVR---------------DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE------ 442 (582)
T ss_pred HhcCCC-----CCCCEEEECCEEhh---------------hCCHHHHhcCeEEEcCCCccccccHHHHHhccCC------
Confidence 999999 99999999998875 2333455678999999999998899999998641
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
....++++.++++.+++.+.+.+.++.+.. ...+.+.+||||||||++||||| ||||++||.
T Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t------~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~ 516 (582)
T 3b5x_A 443 GEYTREQIEQAARQAHAMEFIENMPQGLDT------VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516 (582)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHhCcccccc------hhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 112345677788888887644333333333 22445689999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| ......||+|+ +|++|++++.|++++++..
T Consensus 517 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 517 RAIQAALDELQKNKTVLVIAHRLSTIEQADEIL-VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 899999999 33345799995 6999999999999998764
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-40 Score=316.04 Aligned_cols=198 Identities=10% Similarity=0.122 Sum_probs=153.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++||+++|+++...++ |++|||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~- 84 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPLV- 84 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCCCCCcee---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEcc-
Confidence 357999999999975111245 666999999999999999999999999999999999 99999999998874
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCC-hhh-----hhhhccccccc--CCC
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS-SSL-----RNRMRCKAHKI--GCE 234 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~-~~~-----~~~v~~~l~~~--gl~ 234 (361)
.......+..++||+|++.+++.++.+|+.++... ... ... ...+.++++.+ ++.
T Consensus 85 --------------~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~gl~ 147 (271)
T 2ixe_A 85 --------------QYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR---TPTMEEITAVAMESGAHDFISGFPQGYD 147 (271)
T ss_dssp --------------GBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSS---CCCHHHHHHHHHHHTCHHHHHHSTTGGG
T ss_pred --------------cCCHHHHhccEEEEecCCccccccHHHHHhhhccc---CChHHHHHHHHHHHhHHHHHHhhhcchh
Confidence 11112234568899999877767999999886531 111 111 12344556666 666
Q ss_pred cceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccE
Q 018083 235 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 288 (361)
Q Consensus 235 ~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tv 288 (361)
. .+++++.+||||||||++||||| ||||++||. |+||
T Consensus 148 ~-----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tv 210 (271)
T 2ixe_A 148 T-----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTV 210 (271)
T ss_dssp S-----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEE
T ss_pred h-----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEE
Confidence 5 34888999999999999999999 999999642 7899
Q ss_pred EEEEcC-ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 289 VVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 289 IiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|||+ .....||+++ +|++|++++.|++++++..
T Consensus 211 iivtHd~~~~~~~d~v~-~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 211 LLITQQLSLAERAHHIL-FLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EEECSCHHHHTTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred EEEeCCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 999993 2334599996 5999999999999888754
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.5e-40 Score=308.87 Aligned_cols=192 Identities=14% Similarity=0.079 Sum_probs=146.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeecccccC
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++|+++||+++|++. ++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++.
T Consensus 2 ~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 2 SQLEIRDLWASIDGE---TI---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENIL 70 (250)
T ss_dssp CEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECT
T ss_pred ceEEEEeEEEEECCE---EE---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECC
Confidence 369999999999752 45 6669999999999999999999999999999998 77 99999999998874
Q ss_pred cceEeEeeeecCCCcceeeee-cCCCCcccccchHHHHH-HHHhccccceeEEec--CCChhhhhhhcccccccCCC-cc
Q 018083 162 GTYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKL-WIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCE-PS 236 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d-~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~--~~~~~~~~~v~~~l~~~gl~-~~ 236 (361)
. ..... .+..+++++|++.+++. ++.+|+.++...... ....+..+++.++++.+++. +
T Consensus 71 ~---------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~- 134 (250)
T 2d2e_A 71 E---------------LSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES- 134 (250)
T ss_dssp T---------------SCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG-
T ss_pred C---------------CCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh-
Confidence 1 11111 12346788998877765 788888765321001 11123346778889999995 5
Q ss_pred eeEEEEEEEEEEechhhhhhccCC-chhhhhhhhhhhhcc---------CCCceeecC----------------CccEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 290 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~-LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIi 290 (361)
++++++.+ ||||||||++||||| ||||++||. |+|||+
T Consensus 135 ----------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 198 (250)
T 2d2e_A 135 ----------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALV 198 (250)
T ss_dssp ----------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEE
T ss_pred ----------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45889999 999999999999999 999999653 789999
Q ss_pred EEc--Cccccc-cchhhHhhhhhhhcCCCCcc
Q 018083 291 VTH--GDLLSL-TDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 291 iTH--~~~~~~-aDri~vvl~~G~iv~~g~~~ 319 (361)
+|| +.+..+ |||++ +|++|+++..|+++
T Consensus 199 vtHd~~~~~~~~~d~v~-~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 199 ITHYQRILNYIQPDKVH-VMMDGRVVATGGPE 229 (250)
T ss_dssp ECSSSGGGGTSCCSEEE-EEETTEEEEEESHH
T ss_pred EecCHHHHHHhcCCEEE-EEECCEEEEEeCHH
Confidence 999 456667 59996 59999999887764
No 31
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.8e-40 Score=341.91 Aligned_cols=224 Identities=14% Similarity=0.165 Sum_probs=170.1
Q ss_pred hhhhHHHHHHHHhHHHHHhh-------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh
Q 018083 62 RRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 134 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~-------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl 134 (361)
.....|+.++++.+++.... ..+.|+++|++++|+++. ++ |+|+||+|++||+++|+||||||||||+
T Consensus 324 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~--~~---l~~isl~i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 324 LASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKK--PV---LKDITFHIKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp HHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSS--CS---CCSEEEECCTTCEEEEECCTTSSTTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCC--cc---ccceEEEEcCCCEEEEECCCCCcHHHHH
Confidence 34455899988755432111 223599999999997543 46 5669999999999999999999999999
Q ss_pred hhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEec
Q 018083 135 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 214 (361)
Q Consensus 135 ~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~ 214 (361)
++|+|+++ |++|+|.++|.++. .+...+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 399 ~~l~g~~~-----p~~G~i~~~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~---- 454 (598)
T 3qf4_B 399 NLLMRFYD-----VDRGQILVDGIDIR---------------KIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP---- 454 (598)
T ss_dssp HHHTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST----
T ss_pred HHHhcCcC-----CCCeEEEECCEEhh---------------hCCHHHHHhceEEEeCCCccccccHHHHHhcCCC----
Confidence 99999999 99999999999886 3344456777999999999988899999997632
Q ss_pred CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-
Q 018083 215 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 284 (361)
Q Consensus 215 ~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~- 284 (361)
....+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||.
T Consensus 455 ---~~~~~~~~~~~~~~~~~~~~~~~~~g~------~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 455 ---GATDEEIKEAAKLTHSDHFIKHLPEGY------ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525 (598)
T ss_dssp ---TCCTTHHHHHTTTTTCHHHHHTSTTGG------GCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHH
T ss_pred ---CCCHHHHHHHHHHhCCHHHHHhccccc------cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 122345566677776654210000000 0012344578999999999999999 999999763
Q ss_pred --------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 --------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| -.....||+|+ +|++|++++.|++++++..
T Consensus 526 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLII-VLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEE-EECSSSEEECSCHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 899999999 33445699995 6999999999999998864
No 32
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.7e-40 Score=340.21 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=171.3
Q ss_pred hhhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 61 QRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
.+....|+.++++.+++.... ..+.++++|++++|+++. .++ |+|+||+|++||+++|+|||||||||
T Consensus 307 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 307 SFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKST 382 (578)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred HHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCC-Ccc---eeeeEEEECCCCEEEEECCCCChHHH
Confidence 334455999998765443211 123599999999997533 245 66699999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|+|+++ |++|+|.++|+++. .+...+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 383 ll~~l~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-- 440 (578)
T 4a82_A 383 LINLIPRFYD-----VTSGQILIDGHNIK---------------DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-- 440 (578)
T ss_dssp HHTTTTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS--
T ss_pred HHHHHhcCCC-----CCCcEEEECCEEhh---------------hCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC--
Confidence 9999999999 99999999999886 3344456778999999999988899999998643
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
....+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||
T Consensus 441 -----~~~~~~~~~~~~~~~~~~~~~~lp~g~------~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD 509 (578)
T 4a82_A 441 -----TATDEEVVEAAKMANAHDFIMNLPQGY------DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509 (578)
T ss_dssp -----SCCHHHHHHHHHHTTCHHHHHTSTTGG------GCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred -----CCCHHHHHHHHHHhCcHHHHHhCcchh------hhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 122344555566665543110000000 0022455678999999999999999 99999976
Q ss_pred C---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 284 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 284 ~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
. ++|+|+||| -.....||||+ +|++|++++.|++++++..+
T Consensus 510 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~-~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 510 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV-VIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEE-EEETTEEEEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCC
Confidence 3 899999999 33445699995 69999999999999988653
No 33
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2e-39 Score=337.66 Aligned_cols=225 Identities=11% Similarity=0.141 Sum_probs=170.7
Q ss_pred hhhHHHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhh
Q 018083 63 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 136 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~ 136 (361)
....|+.++++.+++.... ....|+++|++++|+++. .++ |+++||+|++||+++|+||||||||||+++
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 313 AACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp HHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCC-Ccc---ccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 3455899998765432111 134699999999997431 145 666999999999999999999999999999
Q ss_pred hhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCC
Q 018083 137 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 216 (361)
Q Consensus 137 I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~ 216 (361)
|+|+++ |++|+|.++|+++. .....+.+..+++|+|++.+|+.++.+|+.++..
T Consensus 389 l~g~~~-----p~~G~i~~~g~~~~---------------~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~------ 442 (582)
T 3b60_A 389 ITRFYD-----IDEGHILMDGHDLR---------------EYTLASLRNQVALVSQNVHLFNDTVANNIAYART------ 442 (582)
T ss_dssp HTTTTC-----CSEEEEEETTEETT---------------TBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT------
T ss_pred HhhccC-----CCCCeEEECCEEcc---------------ccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC------
Confidence 999999 99999999999875 2333445667899999999888899999998641
Q ss_pred ChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---
Q 018083 217 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 284 (361)
Q Consensus 217 ~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--- 284 (361)
....++++.++++.+++.+.+.+.++.+ ....++.+.+||||||||++||||| ||||++||.
T Consensus 443 ~~~~~~~~~~~l~~~~l~~~~~~~p~g~------~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~ 516 (582)
T 3b60_A 443 EEYSREQIEEAARMAYAMDFINKMDNGL------DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_dssp SCCCHHHHHHHHHTTTCHHHHHHSTTGG------GSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhccccc------cccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence 1122456777788888765220000000 0012345679999999999999999 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| ......||||+ +|++|++++.|++++++..
T Consensus 517 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 517 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIV-VVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE-EEECCEEEEecCHHHHHHc
Confidence 899999999 34446799995 6999999999999988764
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-39 Score=307.97 Aligned_cols=199 Identities=15% Similarity=0.059 Sum_probs=147.5
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh--hcccccccccceeeecccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl--~~~~~~~p~~G~I~i~G~~ 159 (361)
.+++|+++||+++|++. ++ |+++||+|++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|++
T Consensus 17 ~~~~l~~~~l~~~y~~~---~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~ 85 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVEDK---AI---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKD 85 (267)
T ss_dssp ---CEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEE
T ss_pred CCceEEEEeEEEEECCE---EE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEE
Confidence 45589999999999652 45 6669999999999999999999999999999999 46 899999999987
Q ss_pred cCcceEeEeeeecCCCcceeeeec-CCCCcccccchHHHHH-HHHhccccceeEE---ec---CCChhhhhhhccccccc
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELVI---RR---SDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~-r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~---~~---~~~~~~~~~v~~~l~~~ 231 (361)
+.. ...... +..+++++|++.+++. ++.+|+.+..... .. .+..+..+++.++++.+
T Consensus 86 i~~---------------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (267)
T 2zu0_C 86 LLA---------------LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 150 (267)
T ss_dssp GGG---------------SCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHT
T ss_pred CCc---------------CCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHc
Confidence 641 111111 1235677777655544 5555554422000 00 11223356788899999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccC-Cchhhhhhhhhhhhcc---------CCCceeecC----------------C
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 285 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~-~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g 285 (361)
++... ++++++. +||||||||++||||| ||||++||. |
T Consensus 151 gl~~~----------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g 214 (267)
T 2zu0_C 151 KMPED----------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK 214 (267)
T ss_dssp TCCTT----------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSS
T ss_pred CCChh----------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99632 3478887 5999999999999999 999999753 7
Q ss_pred ccEEEEEc--Cccccc-cchhhHhhhhhhhcCCCCcccccc
Q 018083 286 KPVVVVTH--GDLLSL-TDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 286 ~tvIiiTH--~~~~~~-aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
+|||++|| +.+..+ |||++ +|++|+++..|+++++..
T Consensus 215 ~tviivtHd~~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 215 RSFIIVTHYQRILDYIKPDYVH-VLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp CEEEEECSSGGGGGTSCCSEEE-EEETTEEEEEECTTHHHH
T ss_pred CEEEEEeeCHHHHHhhcCCEEE-EEECCEEEEEcCHHHHhh
Confidence 89999999 455565 89996 599999999988877643
No 35
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-39 Score=339.88 Aligned_cols=225 Identities=15% Similarity=0.143 Sum_probs=168.9
Q ss_pred hhhhHHHHHHHHhHHHHHhh--------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 62 RRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~--------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
+....|+.++++.+++.... ..+.|+++|++++|+++. .++ |+++||+|++||+++|+||||||||||
T Consensus 310 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~-~~~---l~~isl~i~~Ge~~~ivG~sGsGKSTl 385 (587)
T 3qf4_A 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENT-DPV---LSGVNFSVKPGSLVAVLGETGSGKSTL 385 (587)
T ss_dssp HHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCC-Ccc---eeceEEEEcCCCEEEEECCCCCCHHHH
Confidence 33455999999765442211 223699999999996533 246 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.++|+++. .+...+.++.+++|+|++.+|+.++.+|+.++..
T Consensus 386 l~~l~g~~~-----~~~G~i~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~--- 442 (587)
T 3qf4_A 386 MNLIPRLID-----PERGRVEVDELDVR---------------TVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--- 442 (587)
T ss_dssp HHTTTTSSC-----CSEEEEEESSSBGG---------------GBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS---
T ss_pred HHHHhCCcc-----CCCcEEEECCEEcc---------------cCCHHHHHhheEEECCCCcCcCccHHHHHhccCC---
Confidence 999999999 99999999999986 3444556778999999999988899999998643
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
....+++.++++.+++.+.+...++. -....++++.+||||||||++||||| ||||++||.
T Consensus 443 ----~~~~~~~~~~~~~~~~~~~i~~l~~g------~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 443 ----DATDDEIVEAAKIAQIHDFIISLPEG------YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp ----SCCHHHHHHHHHHTTCHHHHHTSSSG------GGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred ----CCCHHHHHHHHHHhCcHHHHHhcccc------hhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 11123333344444432211000000 00023677889999999999999999 999999763
Q ss_pred ---------------CccEEEEEcC-ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+|||+ .....||||+ +|++|++++.|++++++..
T Consensus 513 ~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~-vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 513 ITEKRILDGLKRYTKGCTTFIITQKIPTALLADKIL-VLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 8999999993 3345899995 6999999999999998764
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.8e-39 Score=337.30 Aligned_cols=233 Identities=13% Similarity=0.117 Sum_probs=168.0
Q ss_pred hhhHHHHHHHHhHHHHHh--------hhccc-cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 63 RRDAVFREVLQSYDQLRT--------RIGSL-TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~--------~~~~~-lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
....|+.++++.+++... ..... |+++|++++|+++...++ |+++||+|++||+++|+||||||||||
T Consensus 310 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~v---l~~isl~i~~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 310 GAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI---FQDFSLSIPSGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp HHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEE---EEEEEEEECTTCEEEEECCTTSSSTHH
T ss_pred HHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHH
Confidence 345588998875443211 11234 999999999975311245 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|+|+++ |++|+|.++|+++. .+...+.+..+++|+|++.+|+.++.+|+.++...
T Consensus 387 l~~l~g~~~-----p~~G~i~~~g~~i~---------------~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-- 444 (595)
T 2yl4_A 387 LSLLLRLYD-----PASGTISLDGHDIR---------------QLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADD-- 444 (595)
T ss_dssp HHHHTTSSC-----CSEEEEEETTEETT---------------TBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSS--
T ss_pred HHHHhcCcC-----CCCcEEEECCEEhh---------------hCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCC--
Confidence 999999999 99999999999876 23334456678999999998877999999986531
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
.....++++.++++.+++.+.+.+.++.+ .....+.+.+||||||||++||||| ||||++||.
T Consensus 445 --~~~~~~~~~~~~~~~~~l~~~~~~l~~g~------~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 445 --PSSVTAEEIQRVAEVANAVAFIRNFPQGF------NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp --TTTSCHHHHHHHHHHTTCHHHHHTSSSGG------GCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred --ccccCHHHHHHHHHHcCCHHHHHhCcccc------cccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 01123456777888888754210000000 0012344589999999999999999 999999763
Q ss_pred ---------------CccEEEEEcC-ccccccchhhHhhhhhhhcCCCCccccccCCCCCC
Q 018083 285 ---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 329 (361)
Q Consensus 285 ---------------g~tvIiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~~~~~ 329 (361)
++|+|+|||+ .....||||+ +|++|++++.|++++++..+...+
T Consensus 517 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~~~~~ 576 (595)
T 2yl4_A 517 ENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVA-VLDQGKITEYGKHEELLSKPNGIY 576 (595)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEE-EEETTEEEEEECSCC------C--
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhCCChHH
Confidence 8999999993 3335699995 699999999999999987543333
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.6e-39 Score=304.59 Aligned_cols=204 Identities=11% Similarity=0.159 Sum_probs=152.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++||+++|++....++ |+++||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|.++.
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~- 84 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVN- 84 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGG-
T ss_pred CCeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhh-
Confidence 357999999999975321245 666999999999999999999999999999999998 8 799999998874
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
.......+..++||+|++.+++.++.+|+.++.. . ...+++.++++.+++.+.+..-++
T Consensus 85 --------------~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~---~----~~~~~~~~~l~~~~l~~~~~~l~~ 143 (260)
T 2ghi_A 85 --------------KYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL---D----ATDEEVIKATKSAQLYDFIEALPK 143 (260)
T ss_dssp --------------GBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCT---T----CCHHHHHHHHHHTTCHHHHHTSTT
T ss_pred --------------hcCHHHHhccEEEEcCCCcccccCHHHHHhccCC---C----CCHHHHHHHHHHhCCHHHHHhccc
Confidence 1222234567899999988776699999987532 1 112345555666665431100000
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEEc-Cccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 297 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiTH-~~~~ 297 (361)
.....+++++.+||||||||++||||| ||||++||. ++|||++|| ....
T Consensus 144 ------~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~ 217 (260)
T 2ghi_A 144 ------KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI 217 (260)
T ss_dssp ------GGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS
T ss_pred ------cccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 000012467889999999999999999 999999753 789999999 2333
Q ss_pred cccchhhHhhhhhhhcCCCCccccccC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
..||+++ +|++|++++.|++++++..
T Consensus 218 ~~~d~i~-~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 218 SSAESII-LLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp TTCSEEE-EEETTEEEEEECHHHHHHH
T ss_pred HhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 5699996 5999999999999888653
No 38
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.3e-40 Score=367.37 Aligned_cols=225 Identities=13% Similarity=0.139 Sum_probs=183.0
Q ss_pred hhhHHHHHHHHhHHHHHhh---------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchh
Q 018083 63 RRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 133 (361)
Q Consensus 63 ~~~~~~~~~l~~~~~~~~~---------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTL 133 (361)
....|+.++++.++++... ..+.|+++|++|+|++....++ |+|+||+|++|+++|||||||||||||
T Consensus 384 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKSTl 460 (1321)
T 4f4c_A 384 GAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKSTI 460 (1321)
T ss_dssp HHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred HHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEecCCCcHHHH
Confidence 3345999999876553222 2235999999999975432356 666999999999999999999999999
Q ss_pred hhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEe
Q 018083 134 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 213 (361)
Q Consensus 134 l~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~ 213 (361)
+++|.|+++ |++|+|.+||.++. .+....+|+.++||+|++.+|..||.+||.+|..
T Consensus 461 l~ll~~~~~-----~~~G~I~idG~~i~---------------~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--- 517 (1321)
T 4f4c_A 461 ISLLLRYYD-----VLKGKITIDGVDVR---------------DINLEFLRKNVAVVSQEPALFNCTIEENISLGKE--- 517 (1321)
T ss_dssp HHHHTTSSC-----CSEEEEEETTEETT---------------TSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT---
T ss_pred HHHhccccc-----cccCcccCCCccch---------------hccHHHHhhcccccCCcceeeCCchhHHHhhhcc---
Confidence 999999999 99999999999987 5677778889999999999999999999998753
Q ss_pred cCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC
Q 018083 214 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 284 (361)
Q Consensus 214 ~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~ 284 (361)
...++++.++++.+++++.+...++.+.++|+ .....||||||||++||||+ |||||+||.
T Consensus 518 ----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vG------e~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 518 ----GITREEMVAACKMANAEKFIKTLPNGYNTLVG------DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp ----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEES------SSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred ----cchHHHHHHHHHHccchhHHHcCCCCCccEec------CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 33456788888888876644333333333333 34557999999999999999 999999874
Q ss_pred ---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 285 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 285 ---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
|+|+|+||| -...+.||+|+ +|++|+|++.|++++++..
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Ii-vl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLII-SCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEE-EEETTEEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEE-EeeCCeeeccCCHHHHHHh
Confidence 899999999 56668899995 6999999999999998765
No 39
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-38 Score=290.60 Aligned_cols=175 Identities=13% Similarity=0.181 Sum_probs=142.9
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
..+|+++|++++|++ . + |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~--i---l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--P--V---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--E--E---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--e--E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 357999999999965 3 4 777999999999999999999999999999999999 99999999997652
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+.+..++|++|++.+++. ++.+|+.++.... .. ... ++++.++++.+++.+
T Consensus 75 -------------------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~-~~-~~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -------------------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY-GV-KVN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -------------------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT-TC-CCC-HHHHHHHHHHTTCCC------
T ss_pred -------------------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc-CC-chH-HHHHHHHHHHcCCCc------
Confidence 123457888888877666 8889988754211 11 122 567788899999987
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEc--C
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 294 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH--~ 294 (361)
. ++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 788999999999999999999 999999864 789999999 6
Q ss_pred ccccccchhhHhhhhhhh
Q 018083 295 DLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 295 ~~~~~aDri~vvl~~G~i 312 (361)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 778899999 4 666765
No 40
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.6e-38 Score=299.23 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=147.2
Q ss_pred cccccccceeeec-CcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 84 SLTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 84 ~~lei~nl~~~Y~-~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
++|+++|++++|+ +. ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+
T Consensus 3 ~~l~i~~l~~~y~~~~---~v---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~------- 64 (253)
T 2nq2_C 3 KALSVENLGFYYQAEN---FL---FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEV------- 64 (253)
T ss_dssp EEEEEEEEEEEETTTT---EE---EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEE-------
T ss_pred ceEEEeeEEEEeCCCC---eE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE-------
Confidence 3699999999997 42 45 666999999999999999999999999999999999 99999972
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEec---CCChhhhhhhcccccccCCCccee
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~---~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
+..++|++|++.+++. ++.+|+.++...... ......++++.++++.+++.+
T Consensus 65 ---------------------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 120 (253)
T 2nq2_C 65 ---------------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH--- 120 (253)
T ss_dssp ---------------------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG---
T ss_pred ---------------------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH---
Confidence 1235667777665544 788888876421100 112344567888999999987
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 292 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiT 292 (361)
++++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 121 --------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 186 (253)
T 2nq2_C 121 --------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp --------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred --------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999999 999999642 78999999
Q ss_pred c--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 293 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
| +.+..+||+++ +|++|+ +..|++++++.
T Consensus 187 Hd~~~~~~~~d~v~-~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 187 HQPNQVVAIANKTL-LLNKQN-FKFGETRNILT 217 (253)
T ss_dssp SCHHHHHHHCSEEE-EEETTE-EEEEEHHHHCC
T ss_pred cCHHHHHHhCCEEE-EEeCCe-EecCCHHHHhC
Confidence 9 46678999996 599999 88888877754
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.4e-38 Score=298.96 Aligned_cols=184 Identities=14% Similarity=0.128 Sum_probs=152.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
+|+++|++++ ++ |+++||+|++|++++|+||||||||||+|+|+|+++ |+ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~-------~v---l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~--- 64 (249)
T 2qi9_C 4 VMQLQDVAES-------TR---LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLE--- 64 (249)
T ss_dssp EEEEEEEEET-------TT---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGG---
T ss_pred EEEEEceEEE-------EE---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECC---
Confidence 6899999987 13 777999999999999999999999999999999999 99 99999998764
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.......+..++|++|++.+++. ++.+|+.++... .. . ++++.++++.+++.+
T Consensus 65 ------------~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--~~---~-~~~~~~~l~~~~l~~-------- 118 (249)
T 2qi9_C 65 ------------AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--KT---R-TELLNDVAGALALDD-------- 118 (249)
T ss_dssp ------------GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS--TT---C-HHHHHHHHHHTTCGG--------
T ss_pred ------------cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc--CC---c-HHHHHHHHHHcCChh--------
Confidence 11122234457889999877765 899999876321 11 1 567788999999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc----------------CCCceeecC----------------CccEEEE
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVV 291 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL----------------DEPt~~L~~----------------g~tvIii 291 (361)
++++++.+||||||||++||||| ||||++||. |+|||++
T Consensus 119 ---------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 189 (249)
T 2qi9_C 119 ---------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189 (249)
T ss_dssp ---------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45899999999999999999998 699999753 8899999
Q ss_pred Ec--CccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 292 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 292 TH--~~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
|| +.+..+||+++ +|++|++++.|++++++.
T Consensus 190 tHd~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 190 SHDLNHTLRHAHRAW-LLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CSCHHHHHHHCSEEE-EEETTEEEEEEEHHHHSC
T ss_pred eCCHHHHHHhCCEEE-EEECCEEEEeCCHHHHhc
Confidence 99 46668999996 599999999998887754
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.8e-38 Score=295.88 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=152.6
Q ss_pred ccccccceeeecCc-ceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 85 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 85 ~lei~nl~~~Y~~~-~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+|+++|++++|++. ...++ |+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~-- 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVR-- 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGG--
T ss_pred CEEEEEEEEEeCCCCcccee---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECc--
Confidence 47899999999641 00145 666999999 9999999999999999999999997 46899999998764
Q ss_pred eEeEeeeecCCCcceeeeecCCCCc-ccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCC-cceeEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRKV 241 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~-~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~ 241 (361)
.. .. +..++ |++|++.+ ..++.+|+.++... . ...++++.++++.+++. +
T Consensus 69 -------------~~--~~-~~~i~~~v~Q~~~l-~~tv~enl~~~~~~---~--~~~~~~~~~~l~~~gl~~~------ 120 (263)
T 2pjz_A 69 -------------KI--RN-YIRYSTNLPEAYEI-GVTVNDIVYLYEEL---K--GLDRDLFLEMLKALKLGEE------ 120 (263)
T ss_dssp -------------GC--SC-CTTEEECCGGGSCT-TSBHHHHHHHHHHH---T--CCCHHHHHHHHHHTTCCGG------
T ss_pred -------------ch--HH-hhheEEEeCCCCcc-CCcHHHHHHHhhhh---c--chHHHHHHHHHHHcCCChh------
Confidence 11 12 45688 99999877 55899999875321 1 12345678889999998 6
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Cccc
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 297 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~ 297 (361)
.+++++.+||||||||++||||| ||||++||. ..|||++|| +.+.
T Consensus 121 -----------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~ 189 (263)
T 2pjz_A 121 -----------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189 (263)
T ss_dssp -----------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGG
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHH
Confidence 45899999999999999999999 999999763 229999999 4667
Q ss_pred cccc-hhhHhhhhhhhcCCCCccccccC
Q 018083 298 SLTD-RARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 298 ~~aD-ri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
.+|| +++ +|++|++++.|++++++..
T Consensus 190 ~~~d~~i~-~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 190 LYKEYKAY-FLVGNRLQGPISVSELLES 216 (263)
T ss_dssp GCTTSEEE-EEETTEEEEEEEHHHHHTE
T ss_pred HhcCceEE-EEECCEEEEecCHHHHHhh
Confidence 8999 996 5999999999999888743
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.7e-37 Score=285.77 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=136.1
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|+... .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 2 ~~l~~~~l~~~y~~~~-~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSD-PPT---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CCEEEEEEEEESCTTS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred CeEEEEEEEEEeCCCC-Cce---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 3689999999997421 245 666999999999999999999999999999999999 99999999871
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcc---cccccCCCcceeEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC---KAHKIGCEPSVIRK 240 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~---~l~~~gl~~~~~~~ 240 (361)
++|++|++.++..++.+|+.++... .. ...+++.+ +++.+++.+.-
T Consensus 68 -----------------------i~~v~Q~~~~~~~tv~enl~~~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~--- 116 (237)
T 2cbz_A 68 -----------------------VAYVPQQAWIQNDSLRENILFGCQL----EE-PYYRSVIQACALLPDLEILPSG--- 116 (237)
T ss_dssp -----------------------EEEECSSCCCCSEEHHHHHHTTSCC----CT-THHHHHHHHTTCHHHHTTSTTG---
T ss_pred -----------------------EEEEcCCCcCCCcCHHHHhhCcccc----CH-HHHHHHHHHHhhHHHHHhcccc---
Confidence 4455666544433778888875431 11 11122222 22223322100
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec------------------CCccEEEEEc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR------------------DDKPVVVVTH 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~------------------~g~tvIiiTH 293 (361)
....+++++.+||||||||++||||| ||||++|| .++|||++||
T Consensus 117 ---------~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 117 ---------DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp ---------GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred ---------ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 00013678999999999999999999 99999943 2689999999
Q ss_pred -CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 294 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
......||+++ +|++|++++.|++++++..
T Consensus 188 ~~~~~~~~d~v~-~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 188 SMSYLPQVDVII-VMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSTTGGGSSEEE-EEETTEEEEEECHHHHHHH
T ss_pred ChHHHHhCCEEE-EEeCCEEEEeCCHHHHhhc
Confidence 33345799996 5999999999998887653
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.8e-37 Score=286.37 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=135.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
.+|+++|++++|+.+. .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~-~~i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~----- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG-TPV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR----- 70 (229)
T ss_dssp EEEEEEEEEECSSTTS-CCS---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC-----
T ss_pred ceEEEEEEEEEeCCCC-cee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE-----
Confidence 4799999999996322 245 666999999999999999999999999999999999 99999999871
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
++|++|++.+++.++.+|+.++... .. .++.++++.+++.+.+...+
T Consensus 71 -----------------------i~~v~q~~~~~~~tv~enl~~~~~~-----~~---~~~~~~~~~~~l~~~~~~~~-- 117 (229)
T 2pze_A 71 -----------------------ISFCSQFSWIMPGTIKENIIFGVSY-----DE---YRYRSVIKACQLEEDISKFA-- 117 (229)
T ss_dssp -----------------------EEEECSSCCCCSBCHHHHHHTTSCC-----CH---HHHHHHHHHTTCHHHHTTST--
T ss_pred -----------------------EEEEecCCcccCCCHHHHhhccCCc-----Ch---HHHHHHHHHhCcHHHHHhCc--
Confidence 4456666655555778888775321 11 11112222233321000000
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------CccEEEEEcC-ccc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-DLL 297 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~tvIiiTH~-~~~ 297 (361)
......+++++.+||||||||++||||| ||||++||. ++|||++||+ ...
T Consensus 118 ----~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 118 ----EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp ----TGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred ----ccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 0000012445689999999999999999 999999642 7899999993 233
Q ss_pred cccchhhHhhhhhhhcCCCCccccccC
Q 018083 298 SLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 298 ~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
..||+++ +|++|++++.|++++++..
T Consensus 194 ~~~d~v~-~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 194 KKADKIL-ILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHCSEEE-EEETTEEEEEECHHHHHTC
T ss_pred HhCCEEE-EEECCEEEEECCHHHHHhc
Confidence 4699996 5999999999998888654
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.8e-37 Score=342.87 Aligned_cols=226 Identities=12% Similarity=0.138 Sum_probs=169.2
Q ss_pred hhhhHHHHHHHHhHHHHHh---------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 62 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~---------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
+.+..|+.++++.+++... ...+.|+++|++|+|+++...++ |+|+||+|++||+++|+|||||||||
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEECCCCCCHHH
Confidence 3345588888876544321 12236999999999975422346 66699999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|+|+++ |++|+|.++|.++. .+...+.|..+++|+|++.+|+.++.+||.++..
T Consensus 432 l~~ll~g~~~-----~~~G~i~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-- 489 (1284)
T 3g5u_A 432 TVQLMQRLYD-----PLDGMVSIDGQDIR---------------TINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-- 489 (1284)
T ss_dssp HHHHTTTSSC-----CSEEEEEETTEEGG---------------GSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS--
T ss_pred HHHHHhCCCC-----CCCeEEEECCEEHH---------------hCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC--
Confidence 9999999999 99999999999886 3455566778999999999998899999998754
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
....+++.++++.+++.+.+...++.+ .....+.+.+||||||||++||||| ||||++||
T Consensus 490 -----~~~~~~~~~~~~~~~~~~~i~~l~~g~------~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 490 -----DVTMDEIEKAVKEANAYDFIMKLPHQF------DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558 (1284)
T ss_dssp -----SCCHHHHHHHHHHTTCHHHHHHSTTGG------GCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSC
T ss_pred -----CCCHHHHHHHHHHhCcHHHHHhccccc------cccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 112233444445444433110000000 0012456678999999999999999 99999976
Q ss_pred C---------------CccEEEEEcC-ccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 284 D---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 284 ~---------------g~tvIiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
. |+|+|+|||+ .....||+|+ +|++|++++.|++++++..
T Consensus 559 ~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~-vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 559 TESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIA-GFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEE-ECSSSCCCCEECHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 3 8999999992 3334599995 6999999999999988764
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8e-36 Score=334.69 Aligned_cols=228 Identities=11% Similarity=0.103 Sum_probs=170.4
Q ss_pred hhhhHHHHHHHHhHHHHHh---------hhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcch
Q 018083 62 RRRDAVFREVLQSYDQLRT---------RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 132 (361)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~---------~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKST 132 (361)
.....|+.++++..++... ...+.++++||+++|++....++ |+++||+|++||++||+|||||||||
T Consensus 998 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsGKST 1074 (1284)
T 3g5u_A 998 TVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCGKST 1074 (1284)
T ss_dssp HHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTTHHH
T ss_pred HHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCCHHH
Confidence 3445588888876544321 12346999999999975432356 55599999999999999999999999
Q ss_pred hhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEE
Q 018083 133 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 212 (361)
Q Consensus 133 Ll~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~ 212 (361)
|+++|.|+++ |++|+|.++|.++. .....+.|..+++|+|++.+|..++.+|+.++...
T Consensus 1075 l~~~l~g~~~-----p~~G~I~i~g~~i~---------------~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~- 1133 (1284)
T 3g5u_A 1075 VVQLLERFYD-----PMAGSVFLDGKEIK---------------QLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS- 1133 (1284)
T ss_dssp HHHHHTTSSC-----CSEEEEESSSSCTT---------------SSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS-
T ss_pred HHHHHhcCcC-----CCCCEEEECCEEcc---------------cCCHHHHHhceEEECCCCccccccHHHHHhccCCC-
Confidence 9999999999 99999999999986 34455678889999999998888999999986531
Q ss_pred ecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec
Q 018083 213 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 283 (361)
Q Consensus 213 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~ 283 (361)
.....+++.++++.+++.+.+.+.++.+.+ ...+.+.+||||||||++||||| ||||++||
T Consensus 1134 ----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt------~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD 1203 (1284)
T 3g5u_A 1134 ----RVVSYEEIVRAAKEANIHQFIDSLPDKYNT------RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203 (1284)
T ss_dssp ----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGC------BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCC
T ss_pred ----CCCCHHHHHHHHHHhCcHHHHHhCcccccc------ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 111223344445555544311000000000 12345678999999999999999 99999976
Q ss_pred C---------------CccEEEEEc-CccccccchhhHhhhhhhhcCCCCccccccC
Q 018083 284 D---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 324 (361)
Q Consensus 284 ~---------------g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~ 324 (361)
. |+|+|+||| -.....||||+ +|++|++++.|++++++..
T Consensus 1204 ~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~-vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV-VIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEE-EEETBEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 3 899999999 33346699996 6999999999999999875
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.98 E-value=4.3e-35 Score=281.16 Aligned_cols=200 Identities=16% Similarity=0.107 Sum_probs=124.1
Q ss_pred HHHHHHHhHHHHH-----hhhccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 67 VFREVLQSYDQLR-----TRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 67 ~~~~~l~~~~~~~-----~~~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++.++++.+.+.. ....++|+++|+++.+ . ++ |+++||+|++|++++|+||||||||||+|+|+|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~---~v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG--T---PV---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC-----------------------C--C---CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccccccccCCCceEEEEEEEEcC--c---eE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5666665433211 1233579999999864 1 35 66799999999999999999999999999999999
Q ss_pred cccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhh
Q 018083 142 ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR 221 (361)
Q Consensus 142 ~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~ 221 (361)
+ |++|+|.++|. ++|++|++.+++.++.+|+. +.. . ..
T Consensus 89 ~-----p~~G~I~~~g~----------------------------i~~v~Q~~~l~~~tv~enl~-~~~----~-~~--- 126 (290)
T 2bbs_A 89 E-----PSEGKIKHSGR----------------------------ISFCSQNSWIMPGTIKENII-GVS----Y-DE--- 126 (290)
T ss_dssp C-----EEEEEEECCSC----------------------------EEEECSSCCCCSSBHHHHHH-TTC----C-CH---
T ss_pred C-----CCCcEEEECCE----------------------------EEEEeCCCccCcccHHHHhh-Ccc----c-ch---
Confidence 9 99999999861 34556665555456777776 321 0 11
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC--------
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------- 284 (361)
.++.++++.+++.+.+.+.+ ......+++.+.+||||||||++||||| ||||++||.
T Consensus 127 ~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 200 (290)
T 2bbs_A 127 YRYRSVIKACQLEEDISKFA------EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200 (290)
T ss_dssp HHHHHHHHHTTCHHHHHTST------TGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhcc------ccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHH
Confidence 11222233334332100000 0000012445689999999999999999 999999542
Q ss_pred --------CccEEEEEcC-ccccccchhhHhhhhhhhcCCCCcccccc
Q 018083 285 --------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 323 (361)
Q Consensus 285 --------g~tvIiiTH~-~~~~~aDri~vvl~~G~iv~~g~~~~i~~ 323 (361)
++|||++||+ .....||+++ +|++|+++..|++++++.
T Consensus 201 ~ll~~~~~~~tviivtHd~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 201 SCVCKLMANKTRILVTSKMEHLKKADKIL-ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HCCCCCTTTSEEEEECCCHHHHHHSSEEE-EEETTEEEEEECHHHHHH
T ss_pred HHHHHhhCCCEEEEEecCHHHHHcCCEEE-EEECCeEEEeCCHHHHhh
Confidence 7899999993 3335699996 599999999999888764
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=4.3e-31 Score=272.85 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=132.1
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++|+++.|++. . |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+. ...
T Consensus 285 ~~~l~~~~l~~~~~~~----~---l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~---~~i 349 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF----R---LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD---LTV 349 (538)
T ss_dssp CEEEEECCEEEEETTE----E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC---CCE
T ss_pred CeEEEEeeEEEEECCE----E---EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC---ceE
Confidence 3579999999999652 2 677999999999999999999999999999999999 999999862 111
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+++ +|++... ..++.+++..... .. ....+.+.++++.+++.+
T Consensus 350 ~~v-------------------------~Q~~~~~~~~tv~~~~~~~~~--~~---~~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 350 AYK-------------------------PQYIKADYEGTVYELLSKIDA--SK---LNSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp EEE-------------------------CSSCCCCCSSBHHHHHHHHHH--HH---HTCHHHHHHTTTTTTCGG------
T ss_pred EEE-------------------------ecCCcCCCCCcHHHHHHhhhc--cC---CCHHHHHHHHHHHcCChh------
Confidence 222 2221110 0022222211000 00 011345777899999976
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 293 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH-- 293 (361)
.+++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45899999999999999999999 999999652 889999999
Q ss_pred CccccccchhhHhhhh--hhhcCCCCcccccc
Q 018083 294 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 323 (361)
Q Consensus 294 ~~~~~~aDri~vvl~~--G~iv~~g~~~~i~~ 323 (361)
+++..+|||++ +|++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~-vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLM-VFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEE-EEeCCcceEeecCCHHHHHh
Confidence 57778999996 5885 67777888887764
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=4.9e-31 Score=275.88 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=131.9
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
++++++|+++.|++. . |+.+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+. ...+
T Consensus 356 ~~l~~~~l~~~~~~~----~---l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~---~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF----K---LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD---LTVA 420 (607)
T ss_dssp EEEEECCEEEECSSC----E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC---CCEE
T ss_pred eEEEEeceEEEecce----E---EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe---eEEE
Confidence 479999999999652 2 677999999999999999999999999999999999 999999872 1112
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHH-HHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
+ ++|++... ..++.+++..... .. ....+++.++++.+++.+
T Consensus 421 ~-------------------------v~Q~~~~~~~~tv~e~~~~~~~--~~---~~~~~~~~~~l~~~~l~~------- 463 (607)
T 3bk7_A 421 Y-------------------------KPQYIKAEYEGTVYELLSKIDS--SK---LNSNFYKTELLKPLGIID------- 463 (607)
T ss_dssp E-------------------------ECSSCCCCCSSBHHHHHHHHHH--HH---HHCHHHHHHTHHHHTCTT-------
T ss_pred E-------------------------EecCccCCCCCcHHHHHHhhhc--cC---CCHHHHHHHHHHHcCCch-------
Confidence 2 22221110 0022222221100 00 011345677899999987
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--C
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 294 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~ 294 (361)
++++++.+||||||||++||||| ||||++||. |.|||+||| +
T Consensus 464 ----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 464 ----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45899999999999999999999 999999652 889999999 5
Q ss_pred ccccccchhhHhhhh--hhhcCCCCcccccc
Q 018083 295 DLLSLTDRARIRTYL--GELLGIPPAKQIFD 323 (361)
Q Consensus 295 ~~~~~aDri~vvl~~--G~iv~~g~~~~i~~ 323 (361)
.+..+|||++ +|++ |+++..|++++++.
T Consensus 534 ~~~~~adrv~-vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 534 MIDYVSDRLI-VFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHCSEEE-EEEEETTTEEEECCCEEHHH
T ss_pred HHHHhCCEEE-EEcCCcceEEecCCHHHHHh
Confidence 7778999996 5885 66667788887765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=7.3e-30 Score=263.66 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=125.7
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
..++++++++++.|++. . |+.+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+.
T Consensus 266 ~~~~l~~~~l~~~~~~~----~---l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i~ 333 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDF----Q---LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQILS 333 (538)
T ss_dssp CCEEEEECCEEEEETTE----E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCEE
T ss_pred ccceEEEcceEEEECCE----E---EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeeeE
Confidence 34579999999999752 2 666899999999999999999999999999999999 99999998875542
Q ss_pred cceEeEeeeecCCCcceeeeecCCC-CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSL-SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~-i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
+.+ ++.... ...|.| |+.+... .. .......+.++++.+++.+
T Consensus 334 --~~~--------------q~~~~~~~~tv~~-----------~l~~~~~---~~-~~~~~~~~~~~l~~~~l~~----- 377 (538)
T 3ozx_A 334 --YKP--------------QRIFPNYDGTVQQ-----------YLENASK---DA-LSTSSWFFEEVTKRLNLHR----- 377 (538)
T ss_dssp --EEC--------------SSCCCCCSSBHHH-----------HHHHHCS---ST-TCTTSHHHHHTTTTTTGGG-----
T ss_pred --eec--------------hhcccccCCCHHH-----------HHHHhhh---hc-cchhHHHHHHHHHHcCCHH-----
Confidence 111 111110 111233 2222100 00 0112345677899999987
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc-
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 293 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH- 293 (361)
++++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 378 ------------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 378 ------------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp ------------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45899999999999999999999 999999753 889999999
Q ss_pred -CccccccchhhHhhhhh
Q 018083 294 -GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 294 -~~~~~~aDri~vvl~~G 310 (361)
+.+..+||||+ +|+.+
T Consensus 446 l~~~~~~aDri~-vl~~~ 462 (538)
T 3ozx_A 446 LSIHDYIADRII-VFKGE 462 (538)
T ss_dssp HHHHHHHCSEEE-EEEEE
T ss_pred HHHHHHhCCEEE-EEeCC
Confidence 57788999996 58763
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=5.8e-30 Score=267.75 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=126.6
Q ss_pred ccccc--------ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee--
Q 018083 84 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 153 (361)
Q Consensus 84 ~~lei--------~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-- 153 (361)
.+|++ +|++++|++.. .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA--FV---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCC--ee---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35777 89999997532 35 56699 999999999999999999999999999999 999996
Q ss_pred -------eecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHH----HHHHhccccceeEEecCCChhhhh
Q 018083 154 -------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK----LWIMEGVRHGELVIRRSDSSSLRN 222 (361)
Q Consensus 154 -------~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~----~ti~~ni~~~~~~~~~~~~~~~~~ 222 (361)
.++|.++.. +. .........+++++|+...++ .++.+++.. ....+
T Consensus 151 ~~~~~~~~~~G~~~~~-~~------------~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----------~~~~~ 207 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQN-YF------------ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----------VDEVG 207 (607)
T ss_dssp CHHHHHHHTTTSTHHH-HH------------HHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----------TCCSS
T ss_pred ccchhhheeCCEehhh-hh------------hhhhhhhcceEEeechhhhchhhccccHHHHhhh----------hHHHH
Confidence 345544320 00 000001112344455433221 134444431 12235
Q ss_pred hhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------
Q 018083 223 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 284 (361)
Q Consensus 223 ~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------- 284 (361)
++.++++.++|.+ ++++++.+||||||||++||||| ||||++||.
T Consensus 208 ~~~~~L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~ 270 (607)
T 3bk7_A 208 KFEEVVKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270 (607)
T ss_dssp CHHHHHHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 6778899999987 46999999999999999999999 999999763
Q ss_pred -------CccEEEEEc--CccccccchhhHhhhhh
Q 018083 285 -------DKPVVVVTH--GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 285 -------g~tvIiiTH--~~~~~~aDri~vvl~~G 310 (361)
|+|||+||| +.+..+||||+ +|+++
T Consensus 271 L~~l~~~g~tvIivsHdl~~~~~~adri~-vl~~~ 304 (607)
T 3bk7_A 271 IRRLANEGKAVLVVEHDLAVLDYLSDVIH-VVYGE 304 (607)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEE-EEESC
T ss_pred HHHHHhcCCEEEEEecChHHHHhhCCEEE-EECCC
Confidence 899999999 46678899995 48743
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=7.1e-30 Score=277.53 Aligned_cols=209 Identities=16% Similarity=0.186 Sum_probs=132.3
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++|+++|++++|++.. .++ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|+++|. ...
T Consensus 669 ~~mL~v~nLs~~Y~g~~-~~i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS-KPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CRI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCS-SCS---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CCE
T ss_pred CceEEEEeeEEEeCCCC-cee---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cce
Confidence 45799999999996422 245 666999999999999999999999999999999999 99999999863 223
Q ss_pred ceEeEeeee--c----CC-----------C----------cceeeeec-------------C--------CCC--cc---
Q 018083 163 TYFLQEYTI--P----RG-----------S----------NSFSLYDT-------------R--------SLS--DD--- 189 (361)
Q Consensus 163 ~~~~~~~~i--~----~~-----------~----------~~~~~~d~-------------r--------~~i--~~--- 189 (361)
+|+.|.... . .. . ..+...+. | ..+ .+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 333332100 0 00 0 00000000 0 000 00
Q ss_pred ----cccchHHH-----HHHHHhccccceeE------------------EecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 190 ----ASDNINMI-----KLWIMEGVRHGELV------------------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 190 ----v~q~~~l~-----~~ti~~ni~~~~~~------------------~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
+.+|..+. ..++.+|+.++... .....+...++++.++++.+||....
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~----- 893 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI----- 893 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH-----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh-----
Confidence 00000000 00111111110000 00001122345677889999997521
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~ 298 (361)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+..
T Consensus 894 ----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~ 963 (986)
T 2iw3_A 894 ----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKN 963 (986)
T ss_dssp ----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTT
T ss_pred ----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHH
Confidence 14788999999999999999999 999999864 779999999 56778
Q ss_pred ccchhhHhhhhhhhcCCCC
Q 018083 299 LTDRARIRTYLGELLGIPP 317 (361)
Q Consensus 299 ~aDri~vvl~~G~iv~~g~ 317 (361)
+||+++ +|++|+++..|+
T Consensus 964 l~DrVi-vL~~G~Iv~~G~ 981 (986)
T 2iw3_A 964 LTEEVW-AVKDGRMTPSGH 981 (986)
T ss_dssp TCCEEE-CCBTTBCCC---
T ss_pred hCCEEE-EEECCEEEEeCC
Confidence 999996 599999988774
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=8.2e-30 Score=263.32 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=122.4
Q ss_pred ccc-ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee---------ee
Q 018083 86 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 155 (361)
Q Consensus 86 lei-~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I---------~i 155 (361)
.++ +||+++|++.. .+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~--~~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA--FV---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTC--CE---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcc--cc---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 455 69999997532 35 56699 999999999999999999999999999999 999996 34
Q ss_pred cccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH----HHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 156 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL----WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 156 ~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~----ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
+|.++.. . . .........+++++|....++. ++.+++.. ....+++.++++.+
T Consensus 90 ~g~~~~~-~-~-----------~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----------~~~~~~~~~~l~~l 146 (538)
T 1yqt_A 90 RGNELQN-Y-F-----------EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----------ADETGKLEEVVKAL 146 (538)
T ss_dssp TTSTHHH-H-H-----------HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----------HCSSSCHHHHHHHT
T ss_pred CCccHHH-H-H-----------HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----------hhHHHHHHHHHHHc
Confidence 5544320 0 0 0000011123444554332211 23333321 12235677889999
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC----------------Cc
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DK 286 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~----------------g~ 286 (361)
|+.. .+++++.+||||||||++||||| ||||++||. |+
T Consensus 147 gl~~-----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~ 209 (538)
T 1yqt_A 147 ELEN-----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK 209 (538)
T ss_dssp TCTT-----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCh-----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 9987 45899999999999999999999 999999763 89
Q ss_pred cEEEEEc--CccccccchhhHhhhhh
Q 018083 287 PVVVVTH--GDLLSLTDRARIRTYLG 310 (361)
Q Consensus 287 tvIiiTH--~~~~~~aDri~vvl~~G 310 (361)
|||+||| +.+..+||||+ +|++|
T Consensus 210 tvi~vsHd~~~~~~~~dri~-vl~~~ 234 (538)
T 1yqt_A 210 SVLVVEHDLAVLDYLSDIIH-VVYGE 234 (538)
T ss_dssp EEEEECSCHHHHHHHCSEEE-EEEEE
T ss_pred EEEEEeCCHHHHHHhCCEEE-EEcCc
Confidence 9999999 56778999996 58765
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-29 Score=264.64 Aligned_cols=176 Identities=10% Similarity=0.030 Sum_probs=126.4
Q ss_pred ccceeeecCcceeeccccceeccCCCCCc-----eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 163 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~G-----e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~ 163 (361)
+++++.|+... .+ ++++||++.+| |+++|+||||||||||+++|+|+++ |++|+.. ... ..
T Consensus 350 ~~~~~~y~~~~--~~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~~-~~~--~i- 415 (608)
T 3j16_B 350 ASRAFSYPSLK--KT---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDI-PKL--NV- 415 (608)
T ss_dssp SSSCCEECCEE--EE---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCCC-CSC--CE-
T ss_pred cceeEEecCcc--cc---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcCc-cCC--cE-
Confidence 67888887542 45 55599999999 7799999999999999999999999 9999731 111 11
Q ss_pred eEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEE
Q 018083 164 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 243 (361)
Q Consensus 164 ~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~ 243 (361)
.+..++.... ++ .++.+++..... . .....+.+.++++.+++.+
T Consensus 416 -------------~~~~q~~~~~----~~------~tv~e~~~~~~~---~--~~~~~~~~~~~l~~l~l~~-------- 459 (608)
T 3j16_B 416 -------------SMKPQKIAPK----FP------GTVRQLFFKKIR---G--QFLNPQFQTDVVKPLRIDD-------- 459 (608)
T ss_dssp -------------EEECSSCCCC----CC------SBHHHHHHHHCS---S--TTTSHHHHHHTHHHHTSTT--------
T ss_pred -------------EEeccccccc----CC------ccHHHHHHHHhh---c--ccccHHHHHHHHHHcCChh--------
Confidence 1111111111 00 112222211110 0 0112245667889999987
Q ss_pred EEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-----------------CccEEEEEc--Cc
Q 018083 244 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 295 (361)
Q Consensus 244 ~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-----------------g~tvIiiTH--~~ 295 (361)
++++++.+||||||||++||||| ||||++||. |+|||+||| ++
T Consensus 460 ---------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~ 530 (608)
T 3j16_B 460 ---------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM 530 (608)
T ss_dssp ---------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 45999999999999999999999 999999763 899999999 57
Q ss_pred cccccchhhHhhhh--hhhcCCCCccccccC
Q 018083 296 LLSLTDRARIRTYL--GELLGIPPAKQIFDI 324 (361)
Q Consensus 296 ~~~~aDri~vvl~~--G~iv~~g~~~~i~~~ 324 (361)
+..+|||++ +|++ |+++..|+|+++++.
T Consensus 531 ~~~~aDrvi-vl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 531 ATYLADKVI-VFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHCSEEE-ECEEETTTEEECCCCEEHHHH
T ss_pred HHHhCCEEE-EEeCCCCeEEecCChHHHhhh
Confidence 788999996 5886 899999999888764
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=1e-28 Score=260.75 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=108.7
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhh---------------------hhhhhhhcccccc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFA 147 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl---------------------~~I~gl~~~~~~~ 147 (361)
+++++.|-.+....+ |++|||+|++||+++|+||||||||||+ +++.++..
T Consensus 19 ~~~~~~~~~~~~~~~---L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~----- 90 (670)
T 3ux8_A 19 SHMDKIIVKGARAHN---LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK----- 90 (670)
T ss_dssp ---CEEEEEEECSTT---CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------
T ss_pred CCcceEEEcCCCccc---eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----
Confidence 445544422222356 5559999999999999999999999998 78888887
Q ss_pred ccccee-------eecccccCcceEeEeeeecCCCccee-eeecCCCCcccccc--hHHHHH-HHHhccccceeEE-ecC
Q 018083 148 SERAQV-------TYNSSVGDGTYFLQEYTIPRGSNSFS-LYDTRSLSDDASDN--INMIKL-WIMEGVRHGELVI-RRS 215 (361)
Q Consensus 148 p~~G~I-------~i~G~~i~~~~~~~~~~i~~~~~~~~-~~d~r~~i~~v~q~--~~l~~~-ti~~ni~~~~~~~-~~~ 215 (361)
|+.|.| .+++.+... .....+...+.... +......+++++|. ...+.. ++.+|+.+..... ...
T Consensus 91 ~~~~~i~~~~~~i~~~~~~~~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~ 167 (670)
T 3ux8_A 91 PDVDAIEGLSPAISIDQKTTSR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK 167 (670)
T ss_dssp CCCSEEESCCCEEEESSCC--------CCBHHHHTTCC-------------------------CC---------------
T ss_pred CCccceeccccceEecCchhhc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh
Confidence 774444 444433210 00000000000000 00011112222222 222222 5677776532110 000
Q ss_pred CChhhhhh------hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCC
Q 018083 216 DSSSLRNR------MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCP 278 (361)
Q Consensus 216 ~~~~~~~~------v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEP 278 (361)
........ ...+++.+||.+. .+++++.+||||||||++||||| |||
T Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEP 231 (670)
T 3ux8_A 168 EAQIARLILREIRDRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEP 231 (670)
T ss_dssp -----------CHHHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECT
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 00001111 1124777888752 24889999999999999999998 999
Q ss_pred ceeecC----------------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCC
Q 018083 279 YLSFRD----------------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 279 t~~L~~----------------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~ 326 (361)
|++||. |+|||+|||+ .....|||++ +| ++|++++.|++++++..+.
T Consensus 232 tsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii-~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 232 SIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp TTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEE-EECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEE-EecccccccCCEEEEecCHHHHhcCch
Confidence 999864 8999999993 3445699996 58 8999999999998877653
No 56
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-28 Score=249.51 Aligned_cols=174 Identities=11% Similarity=0.009 Sum_probs=135.1
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-e-eeecccc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSV 159 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~-I~i~G~~ 159 (361)
..++++++||++.|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |+++|.
T Consensus 115 ~~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg~- 176 (460)
T 2npi_A 115 NHTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINLD- 176 (460)
T ss_dssp CCTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEECC-
T ss_pred Ccchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcCC-
Confidence 356899999999985 2 999999999999999999999999999999999 9999 9 999871
Q ss_pred cCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHH----HHHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 160 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK----LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 160 i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~----~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
.+..+++++|+..+++ .++.+|+ ++...... ....+++.++++.+|+.+
T Consensus 177 -----------------------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~---~~~~~~~~~ll~~~gl~~ 229 (460)
T 2npi_A 177 -----------------------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG---ATLLHNKQPMVKNFGLER 229 (460)
T ss_dssp -----------------------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS---CCSSCCBCCEECCCCSSS
T ss_pred -----------------------ccCCeeeeccchhhcccccccchhhhh-cccccccC---cchHHHHHHHHHHhCCCc
Confidence 1234566666654322 1455666 54331111 122456778899999987
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhc--c-------------CC-CceeecC------------Ccc
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKP 287 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA--L-------------DE-Pt~~L~~------------g~t 287 (361)
..+ +.+||||||||++|||| | || |+++||. ++|
T Consensus 230 -----------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~t 290 (460)
T 2npi_A 230 -----------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVN 290 (460)
T ss_dssp -----------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCC
T ss_pred -----------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCC
Confidence 334 88999999999999999 3 99 9999753 889
Q ss_pred EEEEEc--C------ccccccch-----hhHhhh-hhhhcCCCCcccc
Q 018083 288 VVVVTH--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 321 (361)
Q Consensus 288 vIiiTH--~------~~~~~aDr-----i~vvl~-~G~iv~~g~~~~i 321 (361)
+|+||| . ++..+||| |+ +|+ +|+++ .++++++
T Consensus 291 viiVth~~~~~l~~~~~~~~~dr~~~~~vi-~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 291 IMLVLCSETDPLWEKVKKTFGPELGNNNIF-FIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp EEEEECCSSCTHHHHHHHHHHHHHCGGGEE-EECCCTTCC-CCCHHHH
T ss_pred EEEEEccCchhhhHHHHHHhcccccCCEEE-EEeCCCcEE-ECCHHHH
Confidence 999999 4 44589999 85 598 99999 8877654
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=1.1e-27 Score=247.26 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=118.7
Q ss_pred ccceeeecCcceeeccccceeccCCCC-CceEEEEEccCCCCcchhhhhhhhhhccccccccccee-----------eec
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 156 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~-~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-----------~i~ 156 (361)
++.+.+|+.+. ++...|.++ +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 45678898764 555667555 899999999999999999999999999 999998 566
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcc
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 236 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~ 236 (361)
|.++.. ++... ... .... ...+.++.+.+.++..++.+++. ....++++.++++.+++..
T Consensus 71 g~~i~~-~~~~~--~~~---~~~~---~~~~~~~~~~~~~~~~~v~~~l~----------~~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN-YFKEL--YSN---ELKI---VHKIQYVEYASKFLKGTVNEILT----------KIDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH-HHHHH--HTT---CCCE---EEECSCTTGGGTTCCSBHHHHHH----------HHCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH-HHHHH--hhc---ccch---hhccchhhhhhhhccCcHHHHhh----------cchhHHHHHHHHHHcCCch-
Confidence 665421 00000 000 0000 00122222222211112222211 1122346677889999987
Q ss_pred eeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------CccEEEEE
Q 018083 237 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 292 (361)
Q Consensus 237 ~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------g~tvIiiT 292 (361)
.+++++.+||||||||++||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45899999999999999999999 999999753 89999999
Q ss_pred c--CccccccchhhHhhhhhhh
Q 018083 293 H--GDLLSLTDRARIRTYLGEL 312 (361)
Q Consensus 293 H--~~~~~~aDri~vvl~~G~i 312 (361)
| +.+..+||+|. +|++|..
T Consensus 195 Hdl~~~~~~~d~i~-vl~~~~~ 215 (538)
T 3ozx_A 195 HDLIVLDYLTDLIH-IIYGESS 215 (538)
T ss_dssp SCHHHHHHHCSEEE-EEEEETT
T ss_pred eChHHHHhhCCEEE-EecCCcc
Confidence 9 57778999996 4876543
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1e-27 Score=250.67 Aligned_cols=171 Identities=14% Similarity=0.069 Sum_probs=115.4
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee-----------ecc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 157 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~-----------i~G 157 (361)
++++++|+.... + |++++ .+++||+++|+||||||||||+|+|+|+++ |++|+|. +.|
T Consensus 81 ~~~~~~Y~~~~~--~---l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~~~~~~g 149 (608)
T 3j16_B 81 AHVTHRYSANSF--K---LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEIIKYFRG 149 (608)
T ss_dssp TTEEEECSTTSC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHHHHHTTT
T ss_pred CCeEEEECCCce--e---ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhhhheecC
Confidence 467888876532 3 44466 699999999999999999999999999999 9999983 333
Q ss_pred cccCcceEeEeeeecCCCcceeeeecCCCCc--ccccchHHHHH-------HHHhccccceeEEecCCChhhhhhhcccc
Q 018083 158 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD--DASDNINMIKL-------WIMEGVRHGELVIRRSDSSSLRNRMRCKA 228 (361)
Q Consensus 158 ~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~--~v~q~~~l~~~-------ti~~ni~~~~~~~~~~~~~~~~~~v~~~l 228 (361)
.++.. +........+. +.+|....++. ++.+++.. ......+++.+++
T Consensus 150 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~--------~~~~~~~~~~~~l 206 (608)
T 3j16_B 150 SELQN---------------YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL--------RMEKSPEDVKRYI 206 (608)
T ss_dssp STHHH---------------HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH--------HCCSCHHHHHHHH
T ss_pred hhhhh---------------hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh--------hhhhHHHHHHHHH
Confidence 22210 00000000000 01111111111 11111110 0122345678889
Q ss_pred cccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------
Q 018083 229 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 284 (361)
Q Consensus 229 ~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~--------------- 284 (361)
+.+++.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 207 ~~~gl~~-----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~ 269 (608)
T 3j16_B 207 KILQLEN-----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA 269 (608)
T ss_dssp HHHTCTG-----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT
T ss_pred HHcCCcc-----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh
Confidence 9999987 46999999999999999999999 999999753
Q ss_pred -CccEEEEEc--CccccccchhhHhhhhhh
Q 018083 285 -DKPVVVVTH--GDLLSLTDRARIRTYLGE 311 (361)
Q Consensus 285 -g~tvIiiTH--~~~~~~aDri~vvl~~G~ 311 (361)
|+|||+||| +.+..+||||+ +|+.|.
T Consensus 270 ~g~tvi~vtHdl~~~~~~~drv~-vl~~~~ 298 (608)
T 3j16_B 270 PTKYVICVEHDLSVLDYLSDFVC-IIYGVP 298 (608)
T ss_dssp TTCEEEEECSCHHHHHHHCSEEE-EEESCT
T ss_pred CCCEEEEEeCCHHHHHHhCCEEE-EEeCCc
Confidence 899999999 57778999996 587654
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=6.1e-27 Score=247.24 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=71.7
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-----
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----- 284 (361)
+++.+++..+++... .+++++.+||||||||++||||| ||||++||.
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 345567778888642 24889999999999999999997 999999753
Q ss_pred -----------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 -----------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|+|||+|||+ .....||||+ +| ++|+|++.|+++++...+
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~-~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEE-EecCCcCCCCCEEEEecCHHHHHhCC
Confidence 8999999993 3446799995 59 899999999999997654
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.91 E-value=6e-27 Score=254.62 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=126.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcce
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 164 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~ 164 (361)
.|...|++++|++. .+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+...
T Consensus 435 ~L~~~~ls~~yg~~---~i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~-- 493 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK---IL---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQE-- 493 (986)
T ss_dssp EEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCTT--
T ss_pred eeEEeeEEEEECCE---Ee---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCcccc--
Confidence 36666899999753 45 666999999999999999999999999999995 222 2222110
Q ss_pred EeEeeeecCCCcceeeeecCCCCcccccch-HHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEE
Q 018083 165 FLQEYTIPRGSNSFSLYDTRSLSDDASDNI-NMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 242 (361)
Q Consensus 165 ~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~-~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~ 242 (361)
. ..+++++|++ .+++. ++.+++.+.. .. . ++++.++++.+|+...
T Consensus 494 ------------~-------~~~~~v~q~~~~~~~~ltv~e~l~~~~-----~~--~-~~~v~~~L~~lgL~~~------ 540 (986)
T 2iw3_A 494 ------------E-------CRTVYVEHDIDGTHSDTSVLDFVFESG-----VG--T-KEAIKDKLIEFGFTDE------ 540 (986)
T ss_dssp ------------T-------SCEEETTCCCCCCCTTSBHHHHHHTTC-----SS--C-HHHHHHHHHHTTCCHH------
T ss_pred ------------c-------eeEEEEcccccccccCCcHHHHHHHhh-----cC--H-HHHHHHHHHHcCCChh------
Confidence 0 0012333332 11112 4555655310 01 1 5678888999999532
Q ss_pred EEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC-------------CccEEEEEc--Ccccc
Q 018083 243 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 298 (361)
Q Consensus 243 ~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~-------------g~tvIiiTH--~~~~~ 298 (361)
.+++++.+||||||||++||||| ||||++||. |.|||+||| +.+..
T Consensus 541 ----------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 541 ----------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDN 610 (986)
T ss_dssp ----------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHH
T ss_pred ----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 45899999999999999999999 999999763 899999999 56778
Q ss_pred ccchhhHhhhhhhhc-CCCCcccccc
Q 018083 299 LTDRARIRTYLGELL-GIPPAKQIFD 323 (361)
Q Consensus 299 ~aDri~vvl~~G~iv-~~g~~~~i~~ 323 (361)
+||+++ +|++|+++ ..|++++++.
T Consensus 611 ~adrii-~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 611 VCEYII-NYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HCSEEE-EEETTEEEEEESCHHHHHH
T ss_pred hCCEEE-EEECCeeecCCCCHHHHHh
Confidence 999996 59999996 5788777653
No 61
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.88 E-value=3.9e-25 Score=213.34 Aligned_cols=186 Identities=13% Similarity=0.053 Sum_probs=125.3
Q ss_pred chhhhhhhhhhhH--HHHHHHHhHHHHHhh------hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEcc
Q 018083 54 SWDSLVDQRRRDA--VFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGP 125 (361)
Q Consensus 54 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~------~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGp 125 (361)
++.....++...+ |+.+++..+++.... ....|+++||++.|+ . ++ |+++||+|++|++++|+||
T Consensus 62 ~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~-~---~v---L~~vsl~i~~Ge~vaIvGp 134 (305)
T 2v9p_A 62 ATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF-I---NA---LKLWLKGIPKKNCLAFIGP 134 (305)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH-H---HH---HHHHHHTCTTCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC-h---hh---hccceEEecCCCEEEEECC
Confidence 3333444444433 888988766543211 123589999999996 2 45 6669999999999999999
Q ss_pred CCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHh-c
Q 018083 126 KGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME-G 204 (361)
Q Consensus 126 nGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~-n 204 (361)
||||||||+++|+|++. |+|... ++|++.++..++.+ |
T Consensus 135 sGsGKSTLl~lL~gl~~--------G~I~~~---------------------------------v~q~~~lf~~ti~~~n 173 (305)
T 2v9p_A 135 PNTGKSMLCNSLIHFLG--------GSVLSF---------------------------------ANHKSHFWLASLADTR 173 (305)
T ss_dssp SSSSHHHHHHHHHHHHT--------CEEECG---------------------------------GGTTSGGGGGGGTTCS
T ss_pred CCCcHHHHHHHHhhhcC--------ceEEEE---------------------------------ecCccccccccHHHHh
Confidence 99999999999999983 777432 34455555556665 7
Q ss_pred cccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc--CCC---c
Q 018083 205 VRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---Y 279 (361)
Q Consensus 205 i~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL--DEP---t 279 (361)
|.++... .. .+.+.++.+ +.. .++ +..|||||||| |||| +.| |
T Consensus 174 i~~~~~~-----~~----~~~~~i~~~-L~~-----------------gld--g~~LSgGqkQR---ARAll~~p~iLlT 221 (305)
T 2v9p_A 174 AALVDDA-----TH----ACWRYFDTY-LRN-----------------ALD--GYPVSIDRKHK---AAVQIKAPPLLVT 221 (305)
T ss_dssp CEEEEEE-----CH----HHHHHHHHT-TTG-----------------GGG--TCCEECCCSSC---CCCEECCCCEEEE
T ss_pred hccCccc-----cH----HHHHHHHHH-hHc-----------------cCC--ccCcCHHHHHH---HHHHhCCCCEEEE
Confidence 7764221 11 222333332 333 123 77999999999 9998 555 7
Q ss_pred eeecC--CccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 280 LSFRD--DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 280 ~~L~~--g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
++||. ...+..+|| ......||+| + |++|++++.|+++++
T Consensus 222 s~LD~~~~~~i~~ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 222 SNIDVQAEDRYLYLHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp ESSCSTTCGGGGGGTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 77774 223344589 4566889999 6 999999999999876
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=7.1e-25 Score=237.68 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=77.1
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-----
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----- 284 (361)
.++.++|+.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 783 ~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~ 846 (916)
T 3pih_A 783 KRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK 846 (916)
T ss_dssp HHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 456678889999652 24889999999999999999998 999999752
Q ss_pred -----------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCCCCCCCchh
Q 018083 285 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 334 (361)
Q Consensus 285 -----------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~~~~~~~~ 334 (361)
|.|||+|||+ +....||+|+ +| ++|+|++.|++++++..+ .+++..++
T Consensus 847 L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi-vLgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l 912 (916)
T 3pih_A 847 LVEVLHRLVDRGNTVIVIEHNLDVIKNADHII-DLGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFL 912 (916)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHH
Confidence 8999999993 3445699995 59 899999999999999876 34554443
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=4.7e-24 Score=229.53 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=73.8
Q ss_pred hhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC-----
Q 018083 222 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 284 (361)
Q Consensus 222 ~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~----- 284 (361)
+++.++++.++|... .+++++.+||||||||++||++| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----------------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 467788999999762 14889999999999999999998 999999742
Q ss_pred -----------CccEEEEEc--CccccccchhhHhh------hhhhhcCCCCccccccCCC
Q 018083 285 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 285 -----------g~tvIiiTH--~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~ 326 (361)
|.|||+||| +.+ ..||||+ +| ++|+|++.|++++++..+.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii-~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVL-DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE-EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE-EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 899999999 445 7899995 59 7999999999999987654
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=1.6e-23 Score=226.62 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=72.0
Q ss_pred hhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC------
Q 018083 223 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 284 (361)
Q Consensus 223 ~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~------ 284 (361)
++.++++.++|... .+++++.+||||||||++||++| ||||++||.
T Consensus 824 ~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 887 (972)
T 2r6f_A 824 RKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARL 887 (972)
T ss_dssp HHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 34567888999752 24889999999999999999998 999999752
Q ss_pred ----------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCC
Q 018083 285 ----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 285 ----------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~ 326 (361)
|.|||+|||+ +....||||+ +| ++|++++.|++++++..+.
T Consensus 888 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi-vL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 888 LDVLHRLVDNGDTVLVIEHNLDVIKTADYII-DLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE-EEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 8999999993 3346799995 59 7899999999999987543
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=4.8e-23 Score=223.55 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=71.5
Q ss_pred hhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc------------CCCceeecC------
Q 018083 223 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 284 (361)
Q Consensus 223 ~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL------------DEPt~~L~~------ 284 (361)
++.++++.++|... .+++++.+||||||||++||++| ||||++||.
T Consensus 842 ~~~~~L~~lgL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l 905 (993)
T 2ygr_A 842 RYLRTLVDVGLGYV----------------RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKL 905 (993)
T ss_dssp HHHHHHHHTTGGGS----------------BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcc----------------cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHH
Confidence 34567888888652 24889999999999999999998 999999652
Q ss_pred ----------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCC
Q 018083 285 ----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 285 ----------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~ 326 (361)
|.|||+|||+ +....||||+ +| ++|++++.|++++++..+.
T Consensus 906 ~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi-vL~p~gg~~~G~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 906 LNVINGLVDKGNTVIVIEHNLDVIKTSDWII-DLGPEGGAGGGTVVAQGTPEDVAAVPA 963 (993)
T ss_dssp HHHHHHHHHTTCEEEEECCCHHHHTTCSEEE-EEESSSTTSCSEEEEEECHHHHHHCTT
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE-EECCCcCCCCCEEEEecCHHHHHhCCH
Confidence 8999999993 3346799995 59 7899999999999987653
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.5e-22 Score=200.56 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=33.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++++|++.+| +++|+||||||||||+++|.++..
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 67799999999 999999999999999999998886
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.79 E-value=2.3e-21 Score=177.06 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
++|++++|+||||||||||+++|+|+ + |++|+|.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~ 53 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS 53 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee
Confidence 89999999999999999999999999 9 9999994
No 68
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.79 E-value=2.2e-21 Score=195.76 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=126.8
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc---cc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~---~i 160 (361)
++++++++++.|+.+ +++ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|+ ++
T Consensus 130 ~~l~~~~v~~~~~tg--~~v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRA---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGREV 198 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHH---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHHH
T ss_pred CceEEeccceecCCC--ceE---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHHH
Confidence 579999999999743 357 4559 9999999999999999999999999999999 99999999997 33
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccc-hHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCccee
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDN-INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 238 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~-~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~ 238 (361)
.. +... .......+..+++++|+ ...+.. ++.+|+.+.....+ ...+.+
T Consensus 199 ~~--------~~~~--~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~-----~~~~~v-------------- 249 (438)
T 2dpy_A 199 KD--------FIEN--ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR-----DRGQHV-------------- 249 (438)
T ss_dssp HH--------HHHT--TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH-----TTTCEE--------------
T ss_pred HH--------HHHh--hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH-----hCCCCH--------------
Confidence 20 0000 00011123456778874 333444 77777764322100 000011
Q ss_pred EEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhccCCC--ceeecC--------------------Cc-----cEEEE
Q 018083 239 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVVVV 291 (361)
Q Consensus 239 ~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP--t~~L~~--------------------g~-----tvIii 291 (361)
..++|. ...||+|| ||++|| +.+| +++++. |. ||+++
T Consensus 250 ------~~~ld~-------l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~ 313 (438)
T 2dpy_A 250 ------LLIMDS-------LTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE 313 (438)
T ss_dssp ------EEEEEC-------HHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECS
T ss_pred ------HHHHHh-------HHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEe
Confidence 111121 34689999 999999 6555 565321 42 89999
Q ss_pred EcCccccccchhhHhhhhhhhcCCCCccccccCC
Q 018083 292 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 292 TH~~~~~~aDri~vvl~~G~iv~~g~~~~i~~~~ 325 (361)
||+.-..+||++. +|.+|+++..+++.++...|
T Consensus 314 tHdl~~~iad~v~-~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 314 GDDQQDPIADSAR-AILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp SSCSCCHHHHHHH-HHSSEEEEECHHHHHTTCSS
T ss_pred CCCccchhhceEE-EEeCcEEEEeCCHHHccCCC
Confidence 9954478899995 59999999999988876654
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.78 E-value=2.9e-20 Score=178.92 Aligned_cols=153 Identities=10% Similarity=0.078 Sum_probs=110.5
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.++..... +. ....+..+..+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a-----~~----ql~~~~~~~~i 156 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAA-----SD----QLEIWAERTGC 156 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHH-----HH----HHHHHHHHHTC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhH-----HH----HHHHHHHhcCc
Confidence 34999999999999999999999999999999999 999999999988641000 00 00011112347
Q ss_pred cccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 188 DDASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 188 ~~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
++++|++. +++. ++.+++.++.. . .....+++.+|+.+ ..++++.+||
T Consensus 157 ~~v~q~~~~~~~~~~v~e~l~~~~~---~-------~~d~~lldt~gl~~-----------------~~~~~~~eLS--- 206 (302)
T 3b9q_A 157 EIVVAEGDKAKAATVLSKAVKRGKE---E-------GYDVVLCDTSGRLH-----------------TNYSLMEELI--- 206 (302)
T ss_dssp EEECCC--CCCHHHHHHHHHHHHHH---T-------TCSEEEECCCCCSS-----------------CCHHHHHHHH---
T ss_pred eEEEecCCccCHHHHHHHHHHHHHH---c-------CCcchHHhcCCCCc-----------------chhHHHHHHH---
Confidence 78888876 5555 78888875432 0 01134677888876 3378889999
Q ss_pred hhhhhhhhcc-----------CCCceeecC-----------CccEEEEEc-CccccccchhhH
Q 018083 266 QYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 266 rQRvaIArAL-----------DEPt~~L~~-----------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+||++||||| | ||++++. +.|+|++|| +...+.+.-+.+
T Consensus 207 kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 9999999998 7 8888653 899999999 666666655544
No 70
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.78 E-value=2.6e-20 Score=179.97 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=46.9
Q ss_pred hhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri 303 (361)
..+.++.+||+|||||++||+|| ||||++||+ +.|||++|| ..+..+||++
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceE
Confidence 34667889999999999999974 999999753 789999999 5667889986
Q ss_pred -hHhhhhhh
Q 018083 304 -RIRTYLGE 311 (361)
Q Consensus 304 -~vvl~~G~ 311 (361)
.++|.+|.
T Consensus 292 ~~v~~~~g~ 300 (322)
T 1e69_A 292 HGVTMVNGV 300 (322)
T ss_dssp EEEEESSSC
T ss_pred EEEEEeCCE
Confidence 12366664
No 71
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=9.9e-21 Score=194.52 Aligned_cols=171 Identities=8% Similarity=-0.049 Sum_probs=116.3
Q ss_pred cccccccceeeecCcceeeccccceeccC-CCCCceEEEEEccCCCCcchhhhh--hhhhhcccccccccceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~--I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++++.+++.+.+ .+ +++ |++++| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+.
T Consensus 11 ~~~~~~~~~~~~-~g--~~~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 11 NNSEHQAIAKMR-TM--IEG---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEET 79 (525)
T ss_dssp ---CCSSCCEEC-CC--CTT---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC
T ss_pred CCcccccccccc-CC--chh---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 357777775543 33 467 555999 999999999999999999999999 789999 8999999999773
Q ss_pred CcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 161 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 161 ~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. ..+...+..+++++|++... +++.+. .. .. .++..++++.+++.+
T Consensus 80 ~----------------~~~~~~~~~~g~~~q~~~~~-----~~l~~~----~~-~~---~~~~~~~l~~~~l~~----- 125 (525)
T 1tf7_A 80 P----------------QDIIKNARSFGWDLAKLVDE-----GKLFIL----DA-SP---DPEGQEVVGGFDLSA----- 125 (525)
T ss_dssp H----------------HHHHHHHGGGTCCHHHHHHT-----TSEEEE----EC-CC---CSSCCSCCSSHHHHH-----
T ss_pred H----------------HHHHHHHHHcCCChHHhhcc-----CcEEEE----ec-Cc---ccchhhhhcccCHHH-----
Confidence 2 11222334568889986531 233211 11 11 123445677777766
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-CCCceeec----------------CCccEEEEEc--Ccc-----
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-NCPYLSFR----------------DDKPVVVVTH--GDL----- 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-DEPt~~L~----------------~g~tvIiiTH--~~~----- 296 (361)
++++.+.+||+||+||+.|+.++ -.|.++++ .|+|||++|| +.+
T Consensus 126 ------------~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~ 193 (525)
T 1tf7_A 126 ------------LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIAR 193 (525)
T ss_dssp ------------HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSST
T ss_pred ------------HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccc
Confidence 56899999999999999775543 12222221 2899999999 343
Q ss_pred ----ccccchhhHhhhhhhh
Q 018083 297 ----LSLTDRARIRTYLGEL 312 (361)
Q Consensus 297 ----~~~aDri~vvl~~G~i 312 (361)
..+||+++ +|++|++
T Consensus 194 ~~i~~~laD~vi-~L~~~~~ 212 (525)
T 1tf7_A 194 YGVEEFVSDNVV-ILRNVLE 212 (525)
T ss_dssp TSCHHHHCSEEE-EEEEECS
T ss_pred ccceeeeeeEEE-EEEEEcc
Confidence 34599995 5998654
No 72
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=2.5e-21 Score=187.14 Aligned_cols=161 Identities=12% Similarity=-0.076 Sum_probs=109.5
Q ss_pred cccccccceeeecCcceeeccccceeccC-----------------------CCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDY-----------------------DVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~-----------------------~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..|++++|++.|.+ + ++++++ ++++|++++|+||||||||||+++|+|+
T Consensus 42 ~~i~~~~v~~~y~p-----~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 42 EQIDLLEVEEVYLP-----L---ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCCHHHHHHTHHH-----H---HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeehhhhhhh-----H---HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 46999999999953 2 333444 2899999999999999999999999999
Q ss_pred hcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhh
Q 018083 141 FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 220 (361)
Q Consensus 141 ~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~ 220 (361)
++ |+.|. ..+++|+|+..+++.++.+|+.+... ...+....
T Consensus 114 l~-----~~~G~--------------------------------~~v~~v~qd~~~~~~t~~e~~~~~~~--~g~~~~~d 154 (312)
T 3aez_A 114 LA-----RWDHH--------------------------------PRVDLVTTDGFLYPNAELQRRNLMHR--KGFPESYN 154 (312)
T ss_dssp HH-----TSTTC--------------------------------CCEEEEEGGGGBCCHHHHHHTTCTTC--TTSGGGBC
T ss_pred cc-----ccCCC--------------------------------CeEEEEecCccCCcccHHHHHHHHHh--cCCChHHH
Confidence 99 76542 12445677766666677788764211 11122233
Q ss_pred hhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec---C----
Q 018083 221 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D---- 284 (361)
Q Consensus 221 ~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~---~---- 284 (361)
.+.+.++++.++ ... .+.++..|||||+||+++|+|+ |||++.++ .
T Consensus 155 ~~~~~~~L~~l~-~~~-----------------~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~ 216 (312)
T 3aez_A 155 RRALMRFVTSVK-SGS-----------------DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSD 216 (312)
T ss_dssp HHHHHHHHHHHH-TTC-----------------SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGG
T ss_pred HHHHHHHHHHhC-CCc-----------------ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHH
Confidence 455666677766 331 2456779999999999999998 99988763 1
Q ss_pred --CccEEEEEc--Cc-cccccchhhHhhhhhh
Q 018083 285 --DKPVVVVTH--GD-LLSLTDRARIRTYLGE 311 (361)
Q Consensus 285 --g~tvIiiTH--~~-~~~~aDri~vvl~~G~ 311 (361)
+.+ |+|+| +. ...+.+|.. .+.+++
T Consensus 217 ~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~ 246 (312)
T 3aez_A 217 LFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA 246 (312)
T ss_dssp GCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG
T ss_pred hcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc
Confidence 444 56666 22 235567773 355554
No 73
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.75 E-value=8.1e-20 Score=160.79 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=27.8
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhh
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
++||+|++||+++|+||||||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 489999999999999999999999999743
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=1.3e-19 Score=165.82 Aligned_cols=128 Identities=12% Similarity=0.086 Sum_probs=75.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
|++|||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++... ......+..
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~~~~--------------~~~~~~~~~ 69 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSCTTR--------------KKREKEKEG 69 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCEECS--------------CCCSSCCBT
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecccCC--------------CCCcccccC
Confidence 67799999999999999999999999999999977 4 88988 7654310 000112346
Q ss_pred CcccccchHHHHHHH--Hhcccccee--EEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCch
Q 018083 187 SDDASDNINMIKLWI--MEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 262 (361)
Q Consensus 187 i~~v~q~~~l~~~ti--~~ni~~~~~--~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 262 (361)
++|++|++.+|+..+ .+++.++.. ..... ..+.+.++++...+ +++| .+||
T Consensus 70 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~------------~il~---------~~ls 124 (218)
T 1z6g_A 70 VDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKI------------CLFE---------MNIN 124 (218)
T ss_dssp TTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCE------------EEEE---------ECHH
T ss_pred CeEEECCHHHHHHhhhccchhhhhhcccccCCC----cHHHHHHHHhCCCc------------EEEE---------ecHH
Confidence 788999998887642 223322111 01111 11234444443221 1111 4799
Q ss_pred hhhhhhhhh-----hhcc---------CCCceee
Q 018083 263 VEKQYNQIV-----ATTF---------NCPYLSF 282 (361)
Q Consensus 263 GGqrQRvaI-----ArAL---------DEPt~~L 282 (361)
|||+||++| ||+| |||++++
T Consensus 125 ggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 125 GVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp HHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 999999999 7777 6777664
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=2.4e-19 Score=176.49 Aligned_cols=152 Identities=9% Similarity=0.073 Sum_probs=111.1
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCc
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 188 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~ 188 (361)
.+||++++|++++|+||||||||||++.|+|+++ |++|+|.++|.++..... +. ....+..+..++
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a-----~e----ql~~~~~r~~i~ 214 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAA-----SD----QLEIWAERTGCE 214 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHH-----HH----HHHHHHHHHTCE
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccch-----hH----HHHHHHHhcCeE
Confidence 4899999999999999999999999999999999 999999999988641000 00 000111123467
Q ss_pred ccccchH-HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 189 DASDNIN-MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 189 ~v~q~~~-l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
+++|+.. +++. ++.+++.++.. . ..-..+++.+|+.+ ..++++.+|| +
T Consensus 215 ~v~q~~~~~~p~~tv~e~l~~~~~---~-------~~d~~lldt~Gl~~-----------------~~~~~~~eLS---k 264 (359)
T 2og2_A 215 IVVAEGDKAKAATVLSKAVKRGKE---E-------GYDVVLCDTSGRLH-----------------TNYSLMEELI---A 264 (359)
T ss_dssp EECCSSSSCCHHHHHHHHHHHHHH---T-------TCSEEEEECCCCSS-----------------CCHHHHHHHH---H
T ss_pred EEEecccccChhhhHHHHHHHHHh---C-------CCHHHHHHhcCCCh-----------------hhhhHHHHHH---H
Confidence 7888765 4444 78888875432 0 01124677788876 3378889999 9
Q ss_pred hhhhhhhcc-----------CCCceeecC-----------CccEEEEEc-CccccccchhhH
Q 018083 267 YNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 267 QRvaIArAL-----------DEPt~~L~~-----------g~tvIiiTH-~~~~~~aDri~v 305 (361)
||++||||| | ||++++. +.|+|++|| +...+....+.+
T Consensus 265 qr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi 325 (359)
T 2og2_A 265 CKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSV 325 (359)
T ss_dssp HHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHH
Confidence 999999988 7 8888653 899999999 766676666654
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.74 E-value=8.9e-20 Score=164.83 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=90.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
+.+ .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+.+.. ...+..
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-----~i~~~~~~~~~~~~-------------------~~~~~~ 65 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-----NLHFSVSATTRAPR-------------------PGEVDG 65 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST-----TCEECCCEESSCCC-------------------TTCCBT
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-----ceEEcccccccCCc-------------------ccccCC
Confidence 555 6999999999999999999999999999986 32222221111100 012345
Q ss_pred CcccccchHHHHH-HHHhccccceeE-----EecCCChhhhhhhccc------ccccCCCcceeEEEEEEEEEEechhhh
Q 018083 187 SDDASDNINMIKL-WIMEGVRHGELV-----IRRSDSSSLRNRMRCK------AHKIGCEPSVIRKVNFVIFVVDGLAVL 254 (361)
Q Consensus 187 i~~v~q~~~l~~~-ti~~ni~~~~~~-----~~~~~~~~~~~~v~~~------l~~~gl~~~~~~~~~~~~~vv~~~~~~ 254 (361)
++|+||++.+++. ++.+++...... ....+..+.++++.+. ++.+++.. ++
T Consensus 66 i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------------~~ 128 (207)
T 1znw_A 66 VDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARA-----------------IK 128 (207)
T ss_dssp TTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHH-----------------HH
T ss_pred CeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHH-----------------HH
Confidence 7899999988876 666776432211 1112223344445444 55556644 45
Q ss_pred hhccCCchhhhhhhhhhhh-----ccCCCceeec---------------------CCccEEEEEc--CccccccchhhHh
Q 018083 255 KSMEGDSDVEKQYNQIVAT-----TFNCPYLSFR---------------------DDKPVVVVTH--GDLLSLTDRARIR 306 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIAr-----ALDEPt~~L~---------------------~g~tvIiiTH--~~~~~~aDri~vv 306 (361)
++++.+|| +++. .||||+++++ .+.|+|+||| +++..+||||++
T Consensus 129 ~~~~~~lS-------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~- 200 (207)
T 1znw_A 129 KTMPEAVT-------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV- 200 (207)
T ss_dssp HHCTTSEE-------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred HhcCCcEE-------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH-
Confidence 77888888 2221 1288877641 2789999999 578899999954
Q ss_pred hh
Q 018083 307 TY 308 (361)
Q Consensus 307 l~ 308 (361)
|.
T Consensus 201 l~ 202 (207)
T 1znw_A 201 GT 202 (207)
T ss_dssp --
T ss_pred hc
Confidence 63
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=5.6e-20 Score=174.17 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=77.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHH
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK 198 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~ 198 (361)
.++|+||||||||||+|+|+|+.. |++|+|.++|.++.. ...+..+++++|+..+++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~------------------~~~~~~i~~v~q~~~~~~ 60 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK------------------TVEIKAIGHVIEEGGVKM 60 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC------------------CCSCCEEEESCC----CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc------------------ceeeeeeEEEeecCCCcC
Confidence 589999999999999999999999 999999999977631 012344677888876655
Q ss_pred H-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc--
Q 018083 199 L-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 275 (361)
Q Consensus 199 ~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-- 275 (361)
. ++.+|+.++.... .....+.+.+++. .. +.+.++.+||||||||++||||+
T Consensus 61 ~ltv~d~~~~g~~~~----~~~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 61 KLTVIDTPGFGDQIN----NENCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp EEEEECCCC--CCSB----CTTCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred CceEEechhhhhhcc----cHHHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 5 7788888765421 1111222222222 22 45778889999999999999997
Q ss_pred ----CCCceeec-----------CCccEEEEEc
Q 018083 276 ----NCPYLSFR-----------DDKPVVVVTH 293 (361)
Q Consensus 276 ----DEPt~~L~-----------~g~tvIiiTH 293 (361)
|||+.+++ ...+||+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 99988854 2578888888
No 78
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.72 E-value=2.4e-19 Score=175.72 Aligned_cols=190 Identities=10% Similarity=0.023 Sum_probs=115.7
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 162 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~ 162 (361)
.++++++++++.|+.+ +.++++ + |+|.+|++++|+||||||||||+++|+|+.+ |+.|.|.+.|++...
T Consensus 43 ~~~i~~~~l~~~~~tg--~~ald~---l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 43 PDPLLRQVIDQPFILG--VRAIDG---L-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGRE 111 (347)
T ss_dssp SCSTTCCCCCSEECCS--CHHHHH---H-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCCeeecccceecCCC--CEEEEe---e-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHHH
Confidence 3579999999999743 467555 9 9999999999999999999999999999999 999999998865310
Q ss_pred ceEeEeeeecCCCcceeeeecCCCCcccccchH--HHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEE
Q 018083 163 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 240 (361)
Q Consensus 163 ~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~--l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~ 240 (361)
. ...+.. . ... .....+.+++|... ........+.. .+.+.....+ .
T Consensus 112 v----~~~i~~-~-~~~--~~~~~v~~~~~~~~~~~~r~~~~~~~~----------------~~ae~~~~~~--~----- 160 (347)
T 2obl_A 112 V----NEFLAL-L-PQS--TLSKCVLVVTTSDRPALERMKAAFTAT----------------TIAEYFRDQG--K----- 160 (347)
T ss_dssp H----HHHHTT-S-CHH--HHTTEEEEEECTTSCHHHHHHHHHHHH----------------HHHHHHHTTT--C-----
T ss_pred H----HHHHHh-h-hhh--hhhceEEEEECCCCCHHHHHHHHHHHH----------------HHHHHHHhcc--c-----
Confidence 0 000000 0 000 00011112222110 00000000000 0000000001 1
Q ss_pred EEEEEEEEechhhhhhccCCchhhhhhhhhhhhccCCC-ceeec------------------CCc-----cEEEEEcCcc
Q 018083 241 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFR------------------DDK-----PVVVVTHGDL 296 (361)
Q Consensus 241 ~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArALDEP-t~~L~------------------~g~-----tvIiiTH~~~ 296 (361)
++++ ++ ..+..||+|| ||+++| +-+.| ++|++ .|. ||+++||+.-
T Consensus 161 -~vl~-~l-------d~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 161 -NVLL-MM-------DSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp -EEEE-EE-------ETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred -cHHH-HH-------hhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 1111 12 2466899999 899999 33555 45632 256 8999999544
Q ss_pred ccccchhhHhhhhhhhcCCCCccccccCCC
Q 018083 297 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 326 (361)
Q Consensus 297 ~~~aDri~vvl~~G~iv~~g~~~~i~~~~~ 326 (361)
..+||++. ++.+|+|+..++..++...|.
T Consensus 230 ~~i~d~v~-~i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 230 DPIGDEVR-SILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp CHHHHHHH-HHCSEEEEBCHHHHTTTCSSC
T ss_pred ChhhhheE-EeeCcEEEEeCCHHHcCCCCC
Confidence 78899996 599999999998887765554
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.70 E-value=8.7e-19 Score=170.50 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=94.2
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeE
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 167 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 167 (361)
++++++ | . ++ +++++|.|++|++++|+||||||||||+++|+|+++ |++|.|.++|.+..
T Consensus 151 ~~~v~f-y--~---~~---l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~e~------ 210 (330)
T 2pt7_A 151 YNLLDN-K--E---QA---ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTEEI------ 210 (330)
T ss_dssp TTTSTT-H--H---HH---HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSCCC------
T ss_pred cCchhh-H--H---HH---HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCeecc------
Confidence 667777 6 1 34 556999999999999999999999999999999999 99999999875311
Q ss_pred eeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEE
Q 018083 168 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 247 (361)
Q Consensus 168 ~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~v 247 (361)
.+...+ .. +++
T Consensus 211 -----------~~~~~~-------------------------------------~~-------i~~-------------- 221 (330)
T 2pt7_A 211 -----------VFKHHK-------------------------------------NY-------TQL-------------- 221 (330)
T ss_dssp -----------CCSSCS-------------------------------------SE-------EEE--------------
T ss_pred -----------ccccch-------------------------------------hE-------EEE--------------
Confidence 000000 00 000
Q ss_pred EechhhhhhccCCchhhhhhhhhhhhcc---------CCCcee--------ecCC-ccEEEEEc-CccccccchhhHhhh
Q 018083 248 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLS--------FRDD-KPVVVVTH-GDLLSLTDRARIRTY 308 (361)
Q Consensus 248 v~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~--------L~~g-~tvIiiTH-~~~~~~aDri~vvl~ 308 (361)
+ . + |||+||++||||| |||++. +..| .|+|++|| ..+...|||++ +|.
T Consensus 222 -----~-~----g--gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~-~l~ 288 (330)
T 2pt7_A 222 -----F-F----G--GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLA-NMS 288 (330)
T ss_dssp -----E-C----B--TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHH-HHH
T ss_pred -----E-e----C--CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhhe-ehh
Confidence 0 0 1 8999999999998 999974 2234 57999999 66888999995 599
Q ss_pred hhhhcCCC
Q 018083 309 LGELLGIP 316 (361)
Q Consensus 309 ~G~iv~~g 316 (361)
+|.....+
T Consensus 289 ~g~~~~~~ 296 (330)
T 2pt7_A 289 SSNSAARN 296 (330)
T ss_dssp HTSGGGTT
T ss_pred cCCcccCC
Confidence 98755433
No 80
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.70 E-value=2.2e-18 Score=169.77 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=50.2
Q ss_pred hhccCCchhhhhhhhhhhhcc---------------CCCceeecC----------------CccEEEEEcC-ccccccch
Q 018083 255 KSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTHG-DLLSLTDR 302 (361)
Q Consensus 255 ~~~~~~LSGGqrQRvaIArAL---------------DEPt~~L~~----------------g~tvIiiTH~-~~~~~aDr 302 (361)
++++.+||||||||++||||| ||||++||+ |.|||+|||+ .....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 688999999999999998876 999999753 7999999993 44678999
Q ss_pred hhHhhhhhhhcC
Q 018083 303 ARIRTYLGELLG 314 (361)
Q Consensus 303 i~vvl~~G~iv~ 314 (361)
++ +|++|+++.
T Consensus 354 ~~-~l~~G~i~~ 364 (365)
T 3qf7_A 354 KL-RITGGVVVN 364 (365)
T ss_dssp EE-EEETTEEC-
T ss_pred EE-EEECCEEEe
Confidence 95 599999875
No 81
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.70 E-value=3.9e-19 Score=177.97 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=101.0
Q ss_pred ceeccCCCCCce--------------------EEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEe
Q 018083 107 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 166 (361)
Q Consensus 107 L~~is~~I~~Ge--------------------~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 166 (361)
|++|||+|++|+ +++|+||||||||||+|+|+|+++ |++|+|.++|.+.+.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~---- 109 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTM---- 109 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----C----
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecce----
Confidence 555999999999 999999999999999999999999 999999999866431
Q ss_pred EeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEE
Q 018083 167 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 245 (361)
Q Consensus 167 ~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~ 245 (361)
.++++|++. ++. ++.+++.++. .+.++.++++.+++.+.
T Consensus 110 --------------------~~~v~q~~~-~~~ltv~D~~g~~~----------~~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 110 --------------------ERHPYKHPN-IPNVVFWDLPGIGS----------TNFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp --------------------CCEEEECSS-CTTEEEEECCCGGG----------SSCCHHHHHHHTTGGGC---------
T ss_pred --------------------eEEeccccc-cCCeeehHhhcccc----------hHHHHHHHHHHcCCCcc---------
Confidence 022233221 111 2233333221 12456677888887651
Q ss_pred EEEechhhhhhccCCchhh--hhhhhhhhhcc-------------------CCCceeecC--------------------
Q 018083 246 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 284 (361)
Q Consensus 246 ~vv~~~~~~~~~~~~LSGG--qrQRvaIArAL-------------------DEPt~~L~~-------------------- 284 (361)
+..+. ||+| |+||++||+|| ||||++||.
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23333 9999 99999999997 999999542
Q ss_pred -C----ccEEEEEc--Cc--cccccchhhHhhhhhh
Q 018083 285 -D----KPVVVVTH--GD--LLSLTDRARIRTYLGE 311 (361)
Q Consensus 285 -g----~tvIiiTH--~~--~~~~aDri~vvl~~G~ 311 (361)
| .+|+++|| .. +..+||++.-.+..|+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1 45778899 33 7888999953455554
No 82
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.67 E-value=7.6e-18 Score=149.94 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=42.2
Q ss_pred hhhccCCchhhhhhhhhhhhc-----c---------CC--CceeecC-------------CccEEEEEc-Cccccccchh
Q 018083 254 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIArA-----L---------DE--Pt~~L~~-------------g~tvIiiTH-~~~~~~aDri 303 (361)
+++++.+||||||||++|||| + || |+++++. +.|+|++|| ..-..+++++
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 478889999999999999996 6 99 9998642 567999998 3223333444
Q ss_pred hHhhhhhhhcC
Q 018083 304 RIRTYLGELLG 314 (361)
Q Consensus 304 ~vvl~~G~iv~ 314 (361)
. --.+|++++
T Consensus 150 ~-~r~~~~i~~ 159 (178)
T 1ye8_A 150 R-RLPGAVLIE 159 (178)
T ss_dssp H-TCTTCEEEE
T ss_pred H-hcCCcEEEE
Confidence 2 123456554
No 83
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.59 E-value=3e-16 Score=151.08 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=94.1
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchH
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN 195 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~ 195 (361)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.++..... + .....+..+..+++++|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~r~~a-----~----~ql~~~~~~~~i~~v~q~~~ 166 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTFRAAG-----G----TQLSEWGKRLSIPVIQGPEG 166 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCSSTTT-----T----HHHHHHHHHHTCCEECCCTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCCChhH-----H----HHHHHHHHhcCceEEEeCCC
Confidence 799999999999999999999999999 999999999988641000 0 00111111234677888876
Q ss_pred HHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhc
Q 018083 196 MIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 274 (361)
Q Consensus 196 l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArA 274 (361)
+++. ++.+++.++.. ...-..+++.+|..+. ...++.+|| +||++||||
T Consensus 167 ~~p~~~v~~~v~~~~~----------~~~d~~llDt~G~~~~-----------------~~~~~~eLs---~~r~~iaRa 216 (304)
T 1rj9_A 167 TDSAALAYDAVQAMKA----------RGYDLLFVDTAGRLHT-----------------KHNLMEELK---KVKRAIAKA 216 (304)
T ss_dssp CCHHHHHHHHHHHHHH----------HTCSEEEECCCCCCTT-----------------CHHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----------CCCCEEEecCCCCCCc-----------------hHHHHHHHH---HHHHHHHHh
Confidence 6555 67777764321 0011124555565441 244555565 899999999
Q ss_pred c-CCCc---eeecC-----------------CccEEEEEc-Cccccccchh
Q 018083 275 F-NCPY---LSFRD-----------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 275 L-DEPt---~~L~~-----------------g~tvIiiTH-~~~~~~aDri 303 (361)
+ .+|. ..||. +.|+|++|| +..++...-+
T Consensus 217 l~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l 267 (304)
T 1rj9_A 217 DPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLI 267 (304)
T ss_dssp CTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHH
T ss_pred hcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHH
Confidence 8 4453 44432 899999999 5544444333
No 84
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.55 E-value=1.4e-15 Score=143.30 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=51.1
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 160 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 160 (361)
++++++|++. ++ |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++
T Consensus 5 ~~~l~~l~~~-------~v---l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 5 IPEFKKLGLP-------DK---VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 64 (261)
T ss_dssp -CCGGGSSCC-------TH---HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSC
T ss_pred CCChHHCCCH-------HH---HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcc
Confidence 5788888854 23 66698 89999999999999999999999999999 88 99999998765
No 85
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.54 E-value=5.7e-17 Score=148.25 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=45.0
Q ss_pred ccccccceeeecCcceeeccccceecc-CCCCCceEEEEEccCCCCcchhhhhhh--hhhcccccccccceeeecccc
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSD-YDVPKTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is-~~I~~Ge~vaLvGpnGSGKSTLl~~I~--gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+++++.++..|+. |+.+- =.|++|++++|+||||||||||+++|+ ++.. +..|.+++++..
T Consensus 6 ~~~~~~i~tg~~~---------lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~ 69 (251)
T 2ehv_A 6 YQPVRRVKSGIPG---------FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEE 69 (251)
T ss_dssp --CCCEECCSCTT---------TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSS
T ss_pred ccccceeecCCHh---------HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccC
Confidence 5677777766643 22231 179999999999999999999999999 7756 667777777654
No 86
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.52 E-value=2.3e-16 Score=154.71 Aligned_cols=181 Identities=9% Similarity=0.039 Sum_probs=105.7
Q ss_pred ceeccCCCCC--ceEEEEEccCCCCcchhhhhhhhhhccccccccc----ceeeecccccCcceEeEeeeecCCCcceee
Q 018083 107 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 180 (361)
Q Consensus 107 L~~is~~I~~--Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~----G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~ 180 (361)
.+.|+++|++ |+.++|+||||||||||+++|+|+++ |++ |++++++..... .+ .+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~-------~~-----~~~~ 220 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGD-------EQ-----AMQY 220 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSC-------TT-----SSCT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCC-------cc-----cCCh
Confidence 3459999999 99999999999999999999999999 888 998875321000 00 0111
Q ss_pred eecCCCCcccccchHHHHHHHHhccccceeEEecCCChhh-----hhhhccccccc--CCCcceeEEEEEEEEEEechhh
Q 018083 181 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL-----RNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGLAV 253 (361)
Q Consensus 181 ~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~-----~~~v~~~l~~~--gl~~~~~~~~~~~~~vv~~~~~ 253 (361)
.+. ..+++++|+..++..++.+|+.+...... .... ..+....+..+ +...+ +.++|+...
T Consensus 221 ~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~--------lllLdE~~~ 288 (365)
T 1lw7_A 221 SDY-PQMALGHQRYIDYAVRHSHKIAFIDTDFI---TTQAFCIQYEGKAHPFLDSMIKEYPFD--------VTILLKNNT 288 (365)
T ss_dssp TTH-HHHHHHHHHHHHHHHHHCSSEEEESSCHH---HHHHHHHHHHSCCCHHHHHHHHHSCCS--------EEEEEECCC
T ss_pred hHH-HHHHHHHHHHHHHHHhccCCEEEEeCCch---HHHHHHHHHcCCCCHHHHHHHhhcCCC--------EEEECCCCC
Confidence 111 23666788877777788888875432000 0000 00001111111 12222 133454210
Q ss_pred -hhhccCCchhhhhhhhhhhhccCCCceeecCCccEEEEEc-CccccccchhhHhhhhhhhcCCCCcccc
Q 018083 254 -LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 254 -~~~~~~~LSGGqrQRvaIArALDEPt~~L~~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~~i 321 (361)
+......+|+||+||.+|+++|.+-.. ..+.+||+++| ..+.++++++.+ +++ ++..+++.++
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~--~~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLD--KYKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISEL 353 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHH--GGGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSC
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHh
Confidence 011223589999999999999832211 12568999999 678889999964 764 7777777665
No 87
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.51 E-value=6.2e-15 Score=145.02 Aligned_cols=64 Identities=8% Similarity=-0.086 Sum_probs=54.0
Q ss_pred hhccC-Cchhhhhhhhhhhhcc------------------CCCceeecC-------------CccEEEEEcCccccccch
Q 018083 255 KSMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTHGDLLSLTDR 302 (361)
Q Consensus 255 ~~~~~-~LSGGqrQRvaIArAL------------------DEPt~~L~~-------------g~tvIiiTH~~~~~~aDr 302 (361)
++++. .||||||||++||++| |||+++||+ +.|+|++||... .||+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~--~~~~ 336 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP--GAAL 336 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT--TCSE
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc--cCCE
Confidence 44565 7999999999999998 999999864 578999999322 8999
Q ss_pred hhHhhhhhhhcCCCCcccc
Q 018083 303 ARIRTYLGELLGIPPAKQI 321 (361)
Q Consensus 303 i~vvl~~G~iv~~g~~~~i 321 (361)
++ ++++|+++..|+++++
T Consensus 337 i~-~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 337 TL-RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EE-EEETTEEEECCCTTTS
T ss_pred EE-EEECCEEEecCCHHHH
Confidence 95 5999999999998876
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=1.4e-15 Score=156.23 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=94.7
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccce--eeecccccC
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ--VTYNSSVGD 161 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~--I~i~G~~i~ 161 (361)
+.+++++++..|+.-. .+ ++..|++|++++|+||||||||||+++++|+.. +. |. +++.+++..
T Consensus 256 ~~~~~~~l~~g~~~ld--~v------L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~~~ee~~ 321 (525)
T 1tf7_A 256 QRSSNVRVSSGVVRLD--EM------CGGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILFAYEESR 321 (525)
T ss_dssp CCCCCCEECCSCHHHH--HH------TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEEESSSCH
T ss_pred cccccceeecChHHHH--HH------hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEEEEeCCH
Confidence 3467777776664311 12 355999999999999999999999999999998 64 54 233221110
Q ss_pred cceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEE
Q 018083 162 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 241 (361)
Q Consensus 162 ~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~ 241 (361)
+ .+.... . .++. + .. + +...|+..
T Consensus 322 ------------------------------~--~l~~~~--~--~~g~------~---~~----~-~~~~g~~~------ 345 (525)
T 1tf7_A 322 ------------------------------A--QLLRNA--Y--SWGM------D---FE----E-MERQNLLK------ 345 (525)
T ss_dssp ------------------------------H--HHHHHH--H--TTSC------C---HH----H-HHHTTSEE------
T ss_pred ------------------------------H--HHHHHH--H--HcCC------C---HH----H-HHhCCCEE------
Confidence 0 011111 0 0110 0 00 1 11223322
Q ss_pred EEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeecC---------------------CccEEEE
Q 018083 242 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------------DKPVVVV 291 (361)
Q Consensus 242 ~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~~---------------------g~tvIii 291 (361)
+.+..|.+||+||+||+++|+++ | |+++|+. |+|||++
T Consensus 346 -----------~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 346 -----------IVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp -----------ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----------EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 23667889999999999999997 8 9887542 8999999
Q ss_pred EcCc------------cccccchhhHhhhhhh
Q 018083 292 THGD------------LLSLTDRARIRTYLGE 311 (361)
Q Consensus 292 TH~~------------~~~~aDri~vvl~~G~ 311 (361)
||+. +..+||+++ +|+.|+
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi-~L~~ge 444 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTII-LLQYVE 444 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEE-EEEEEE
T ss_pred ECcccccCcccccCcccceeeeEEE-EEEEEE
Confidence 9943 347899995 599887
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.50 E-value=1.5e-15 Score=143.98 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=42.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~ 159 (361)
|+++++.|++|++++|+||||||||||++.|++... |.+| .|.+.+.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~e 73 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAMLE 73 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEESS
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeCc
Confidence 666999999999999999999999999999999998 8878 77665543
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.49 E-value=2.5e-15 Score=165.10 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=87.0
Q ss_pred ccccccc-----ceeeecCcceeeccccceeccCCCCC-------ceEEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 84 SLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 84 ~~lei~n-----l~~~Y~~~~~~~~l~~L~~is~~I~~-------Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
++|++++ |++.|.++. .+ ++|++|++++ |++++|+||||||||||+|+| |++. +- +
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~--~v---~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~-a 816 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDD--FI---PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM-A 816 (1022)
T ss_dssp CCEEEEEECCCC------CCC--CC---CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH-H
T ss_pred ceEEEEeccccEEEEEecCCc--eE---eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH-h
Confidence 3588999 999984332 35 6679999987 899999999999999999999 9997 41 1
Q ss_pred eeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhccccccc
Q 018083 152 QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 231 (361)
Q Consensus 152 ~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~ 231 (361)
+ ..++|||+..- .++.++ ++..+
T Consensus 817 q---------------------------------iG~~Vpq~~~~--l~v~d~----------------------I~~ri 839 (1022)
T 2o8b_B 817 Q---------------------------------MGCYVPAEVCR--LTPIDR----------------------VFTRL 839 (1022)
T ss_dssp T---------------------------------TTCCEESSEEE--ECCCSB----------------------EEEEC
T ss_pred h---------------------------------eeEEeccCcCC--CCHHHH----------------------HHHHc
Confidence 0 01134443210 011111 12234
Q ss_pred CCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc---------CCCceeec-----------------C-
Q 018083 232 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-----------------D- 284 (361)
Q Consensus 232 gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL---------DEPt~~L~-----------------~- 284 (361)
|+.+.+ ....+++|+++++ +++|+++ |||++|++ .
T Consensus 840 g~~d~~-----------------~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~ 901 (1022)
T 2o8b_B 840 GASDRI-----------------MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI 901 (1022)
T ss_dssp C--------------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHH-----------------hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 544422 3445678888776 7888876 99998842 2
Q ss_pred CccEEEEEc--CccccccchhhHhhhhhhhc--CCCCc
Q 018083 285 DKPVVVVTH--GDLLSLTDRARIRTYLGELL--GIPPA 318 (361)
Q Consensus 285 g~tvIiiTH--~~~~~~aDri~vvl~~G~iv--~~g~~ 318 (361)
|+++|++|| +.+..+||++.+ + +|++. ..|++
T Consensus 902 g~~vl~~TH~~el~~~~~d~~~v-~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 902 KCRTLFSTHYHSLVEDYSQNVAV-R-LGHMACMVENEC 937 (1022)
T ss_dssp CCEEEEECCCHHHHHHTSSCSSE-E-EEEEEEC-----
T ss_pred CCEEEEEeCCHHHHHHhCCccee-e-cCeEEEEEecCc
Confidence 789999999 566678999943 4 68876 44443
No 91
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.49 E-value=6.9e-16 Score=134.97 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++.+++++.|+.. .+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 8 ~~~~~~~~~~g~~---~~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKK---FA---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHH---HH---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHH---HH---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeee
Confidence 4566788888642 46 55599999999999999999999999999999998 36899999998874
No 92
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=2.8e-16 Score=150.79 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=22.3
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhh-hcccccccccceeeecccccC
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl-~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.||++.|+.. .+ +++++|+| +|+||||||||||+++|.|. .. |++| +.++|.++.
T Consensus 2 ~~l~~~~~~~---~~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~ 57 (301)
T 2qnr_A 2 SNLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIE 57 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------
T ss_pred CCCcceECCE---EE---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccC
Confidence 4788999763 56 55599987 99999999999999999997 66 8888 888776653
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.47 E-value=1.4e-15 Score=140.88 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+++||++++|+++||+||||||||||+++|+|++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 555999999999999999999999999999999873
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.47 E-value=8.5e-15 Score=159.43 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=84.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 186 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~ 186 (361)
++|++|++++|++++|+||||||||||+|+|+.+.-. +..|.. ++... ..
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~----aq~G~~-----------vpa~~--------~~------- 701 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM----AQIGCF-----------VPCES--------AE------- 701 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH----HHHTCC-----------BSEEE--------EE-------
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH----HhcCCc-----------ccccc--------cc-------
Confidence 5679999999999999999999999999999554320 222200 00000 00
Q ss_pred CcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 187 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 187 i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
+ ..+..++..+|+.+.+ .+..+++|++|+
T Consensus 702 ~----------------------------------~~~d~i~~~ig~~d~l-----------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 V----------------------------------SIVDCILARVGAGDSQ-----------------LKGVSTFMAEML 730 (934)
T ss_dssp E----------------------------------ECCSEEEEECC--------------------------CHHHHHHH
T ss_pred c----------------------------------hHHHHHHHhcCchhhH-----------------HHhHhhhHHHHH
Confidence 0 0011234445554422 344445566666
Q ss_pred hhhhhhhcc--------CCCceeec------------------CCccEEEEEc-CccccccchhhHhhhhhhhcCCCCcc
Q 018083 267 YNQIVATTF--------NCPYLSFR------------------DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAK 319 (361)
Q Consensus 267 QRvaIArAL--------DEPt~~L~------------------~g~tvIiiTH-~~~~~~aDri~vvl~~G~iv~~g~~~ 319 (361)
|+..|++++ |||++|++ .|+|+|++|| .++..+||++. .+.+|++...++.+
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~-~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP-TVNNLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCT-TEEEEEEEEEEETT
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccc-eeEeeEEEEEecCC
Confidence 666666444 99999953 2899999999 67778999995 59999998877776
Q ss_pred ccc
Q 018083 320 QIF 322 (361)
Q Consensus 320 ~i~ 322 (361)
++.
T Consensus 810 ~l~ 812 (934)
T 3thx_A 810 TLT 812 (934)
T ss_dssp EEE
T ss_pred cEE
Confidence 653
No 95
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.47 E-value=1.8e-15 Score=158.31 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=82.2
Q ss_pred ccccccceeeecCcceeeccccce-------eccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeec
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMT-------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYN 156 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~-------~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~ 156 (361)
.++++|+++.|+... .++++.++ +.+|+++. ++|+||||||||||+++|+|++. | ++|.|+++
T Consensus 10 ~i~~~~l~~~~~~~~-r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTRC 80 (608)
T ss_dssp ----------CHHHH-HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------CCCS
T ss_pred hhhhhhhhHHHHHHH-HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEEc
Confidence 578999999996432 12222100 12477765 99999999999999999999998 7 79999999
Q ss_pred ccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCc
Q 018083 157 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 235 (361)
Q Consensus 157 G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~ 235 (361)
|.++... . . ......+..+++++|+..+++. ++.+|+.+..............+.+.-.+..... +
T Consensus 81 g~~i~~~---~---~------~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~-p 147 (608)
T 3szr_A 81 PLVLKLK---K---L------VNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDV-P 147 (608)
T ss_dssp CEEEEEE---E---C------SSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSS-C
T ss_pred CEEEEEe---c---C------CccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCC-C
Confidence 9876310 0 0 0011234567888888766555 8888887643211111111111111111111111 2
Q ss_pred ceeEEEEEEEEEEechhhhhhccCCchhh-hhhhhhhhhcc-CCCceeecCCccEEEEEc
Q 018083 236 SVIRKVNFVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH 293 (361)
Q Consensus 236 ~~~~~~~~~~~vv~~~~~~~~~~~~LSGG-qrQRvaIArAL-DEPt~~L~~g~tvIiiTH 293 (361)
+ +.++|++.+.......|+.+ ++|...+++.+ .+|. +.+++++||
T Consensus 148 ~--------LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~ 194 (608)
T 3szr_A 148 D--------LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPS 194 (608)
T ss_dssp C--------EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEES
T ss_pred c--------eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEec
Confidence 1 46788887766667777665 44666666663 3332 245666677
No 96
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.44 E-value=2.3e-14 Score=128.76 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=83.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCcccccchHH
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM 196 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q~~~l 196 (361)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .+...+..+++++|+..-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~-----------------~~~~~~~~ig~~~~~~~g 56 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE-----------------EVRQGGRRIGFDVVTLSG 56 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC-----------------EEETTSSEEEEEEEETTS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc-----------------hhHhhhceEEEEEEeccc
Confidence 68999999999999999999999996 568 999886653 111234445666665410
Q ss_pred HHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcc-eeEEEEEEEEEEechhhhhhccCCchhhhhhhh-hhhh-
Q 018083 197 IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS-VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ-IVAT- 273 (361)
Q Consensus 197 ~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~-~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRv-aIAr- 273 (361)
. ..++ ..+.+... .. ......++...+|+|||+++ ++++
T Consensus 57 ---~-~~~l-----------------------~~~~~~~~~~~-----------~~~~v~~~~~~ls~~er~~~~~l~~~ 98 (189)
T 2i3b_A 57 ---T-RGPL-----------------------SRVGLEPPPGK-----------RECRVGQYVVDLTSFEQLALPVLRNA 98 (189)
T ss_dssp ---C-EEEE-----------------------EECCCCCCSSS-----------CCEESSSSEECHHHHHTTTTTTTCCC
T ss_pred ---c-eehh-----------------------hcccccCCccc-----------cccccceEEEcchHHHHHHHHHHhhh
Confidence 0 0010 11111000 00 00012556667999999988 5555
Q ss_pred --cc---------CC--Cceee------------cCCccEEE--EE--cCccccccchhhHhhhhhhhcCCC
Q 018083 274 --TF---------NC--PYLSF------------RDDKPVVV--VT--HGDLLSLTDRARIRTYLGELLGIP 316 (361)
Q Consensus 274 --AL---------DE--Pt~~L------------~~g~tvIi--iT--H~~~~~~aDri~vvl~~G~iv~~g 316 (361)
|+ || |+..+ +...|+|+ ++ |+....++|+|. .+.+|+|+...
T Consensus 99 a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~-~~~~~~i~~~~ 169 (189)
T 2i3b_A 99 DCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIR-NRKDVKVFNVT 169 (189)
T ss_dssp CCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHH-TTCCSEEEECC
T ss_pred hHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHe-ecCCcEEEEeC
Confidence 33 99 66432 23556665 44 843367899995 58889887654
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.42 E-value=4.1e-15 Score=134.16 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=84.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhccccccc-----ccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-----~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
-|++|++++|+||||||||||+++|+|++... + ..+.+++++.+.. . ...+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~---~~~g~~~~~~i~~~~~~~~-----------------~----~~~i 76 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTF-----------------R----PERI 76 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSCEEEEEESSSCC-----------------C----HHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCEEEEEECCCCC-----------------C----HHHH
Confidence 79999999999999999999999999976611 2 2235555543311 0 0123
Q ss_pred cccccchHHHHHHHHhccccceeEEecCCChhh---hhhhcccccc-cC-CCcceeEEEEEEEEEEechhhhhhccCCch
Q 018083 188 DDASDNINMIKLWIMEGVRHGELVIRRSDSSSL---RNRMRCKAHK-IG-CEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 262 (361)
Q Consensus 188 ~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~---~~~v~~~l~~-~g-l~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 262 (361)
.+++|...+++.++.+|+.+.... ..... .+++.+++.. +. ... .=++++|++... ...++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~llilDe~~~~--l~~~~~ 143 (231)
T 4a74_A 77 REIAQNRGLDPDEVLKHIYVARAF----NSNHQMLLVQQAEDKIKELLNTDRP-------VKLLIVDSLTSH--FRSEYI 143 (231)
T ss_dssp HHHHHHTTSCHHHHHHTEEEEECC----SHHHHHHHHHHHHHHHHHHTTSSSC-------EEEEEEETSSHH--HHHHSC
T ss_pred HHHHHHcCCCHHHHhhcEEEEecC----ChHHHHHHHHHHHHHHHHhcccCCc-------eeEEEECChHHH--hccccC
Confidence 344555555555778887754321 11111 1222222221 10 111 124677886532 233444
Q ss_pred h----hhhhhh--hhhhccCCCceee--cCCccEEEEEc--Cc----cccccchhhHhhhhhh
Q 018083 263 V----EKQYNQ--IVATTFNCPYLSF--RDDKPVVVVTH--GD----LLSLTDRARIRTYLGE 311 (361)
Q Consensus 263 G----GqrQRv--aIArALDEPt~~L--~~g~tvIiiTH--~~----~~~~aDri~vvl~~G~ 311 (361)
+ +|||+. .+.+.| ..+ ..|+|||++|| .. +..+||+++ ++++|+
T Consensus 144 ~~~~~~~r~~~~~~~~~~l----~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l-~l~~~~ 201 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADL----HRLANLYDIAVFVTNQVQANGGHILAHSATLRV-YLRKGK 201 (231)
T ss_dssp STTHHHHHHHHHHHHHHHH----HHHHHHHTCEEEEEEECC---------CCSEEE-EEEECT
T ss_pred CCcchhHHHHHHHHHHHHH----HHHHHHCCCeEEEEeecccCcchhhHhhceEEE-EEEecC
Confidence 4 344332 233332 111 23889999999 33 678899995 588754
No 98
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=1.2e-14 Score=141.72 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=61.0
Q ss_pred hccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++++++++++.|+.. .+ |++++|++.+|++++|+||||||||||+++|+|++. |++|+|.+.|.++.
T Consensus 26 ~i~~ie~~~~~~~~~~~---~~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 26 AITLAESRRADHRAAVR---DL---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHHHTCSSHHHHHHHH---HH---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGG
T ss_pred HHHHHeeCCcccccChH---HH---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCc
Confidence 34579999999999642 45 556999999999999999999999999999999999 99999999998764
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.41 E-value=3.4e-14 Score=144.72 Aligned_cols=168 Identities=11% Similarity=0.119 Sum_probs=102.5
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
+++||++++|++++|+||||||||||+++|+|+++ +++|+|.++|.+..... .+. ....+..+..+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~r~a-----a~e----QL~~~~~r~~I 349 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTFRAA-----AVE----QLQVWGQRNNI 349 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTTCHH-----HHH----HHHHHHHHHTC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcccchh-----hHH----HHHHHHHhcCc
Confidence 45999999999999999999999999999999999 99999999887753100 000 00111123457
Q ss_pred cccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhh
Q 018083 188 DDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 266 (361)
Q Consensus 188 ~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqr 266 (361)
++++|+..+++. ++.+++.++... .. + .-+++.+|..... ..+..+|+
T Consensus 350 ~vV~Q~~~~~p~~tV~e~l~~a~~~--~~------D--vVLIDTaGrl~~~-----------------~~lm~EL~---- 398 (503)
T 2yhs_A 350 PVIAQHTGADSASVIFDAIQAAKAR--NI------D--VLIADTAGRLQNK-----------------SHLMEELK---- 398 (503)
T ss_dssp CEECCSTTCCHHHHHHHHHHHHHHT--TC------S--EEEECCCCSCCCH-----------------HHHHHHHH----
T ss_pred eEEecccCcCHHHHHHHHHHHHHhc--CC------C--EEEEeCCCccchh-----------------hhHHHHHH----
Confidence 888887654444 788888754320 00 0 1134444443210 22222333
Q ss_pred hhhhhhhcc--CCCc---eeec-----------------CCccEEEEEc-CccccccchhhHhhhh-h-hhcCCCCcccc
Q 018083 267 YNQIVATTF--NCPY---LSFR-----------------DDKPVVVVTH-GDLLSLTDRARIRTYL-G-ELLGIPPAKQI 321 (361)
Q Consensus 267 QRvaIArAL--DEPt---~~L~-----------------~g~tvIiiTH-~~~~~~aDri~vvl~~-G-~iv~~g~~~~i 321 (361)
|++.+++++ +.|. .-++ -+.|.||+|| +...+....+.+ ++. | .|...|.-+.+
T Consensus 399 kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIlTKLD~takgG~~lsi-~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 399 KIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSV-ADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHH-HHHHCCCEEEEECSSSG
T ss_pred HHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEEEcCCCcccccHHHHH-HHHHCCCEEEEecCCCh
Confidence 566666655 2332 1111 2789999999 766777777764 442 3 45555555444
No 100
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.41 E-value=6.5e-14 Score=136.06 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=44.4
Q ss_pred hhhhccCCchhhhhh------hhhhhhcc---------CCCceeecC----------------CccEEEEEc-Ccccccc
Q 018083 253 VLKSMEGDSDVEKQY------NQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 300 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQ------RvaIArAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~a 300 (361)
..++++.+||||||| |+++|+|| ||||++||+ +.|||+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 357889999999999 55666665 999999763 679999999 5677889
Q ss_pred chhhHhhh
Q 018083 301 DRARIRTY 308 (361)
Q Consensus 301 Dri~vvl~ 308 (361)
|+++ +|.
T Consensus 321 d~~~-~l~ 327 (339)
T 3qkt_A 321 DHVI-RIS 327 (339)
T ss_dssp SEEE-EEE
T ss_pred CEEE-EEE
Confidence 9995 464
No 101
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=4.6e-14 Score=125.65 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=36.4
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
+|+++|+++.|+. .+ +++ |++++|..++|+|+||||||||+|+|+|........|+.|.+.+.
T Consensus 3 ~l~~~~~~~~~~~----~~---l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~ 65 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PD---IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI 65 (210)
T ss_dssp --------CEEEE----SS---GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE
T ss_pred chhhhhhhheeec----CC---HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee
Confidence 5899999999962 23 655 999999999999999999999999999987101111788877654
No 102
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.41 E-value=2.3e-14 Score=126.32 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=71.8
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 192 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q 192 (361)
.+++|++++|+||||||||||+++|++.. ..|.|.++|.++.. .. ..+...++++|
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-------~~g~i~i~~d~~~~---------------~~--~~~~~~~~~~~ 60 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-------GVPKVHFHSDDLWG---------------YI--KHGRIDPWLPQ 60 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-------SSCEEEECTTHHHH---------------TC--CSSCCCTTSSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-------CCCeEEEcccchhh---------------hh--hcccccCCccc
Confidence 57899999999999999999999999973 46899999876530 00 11234567777
Q ss_pred chHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhh--hhccCCchhhhhhhhh
Q 018083 193 NINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL--KSMEGDSDVEKQYNQI 270 (361)
Q Consensus 193 ~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~--~~~~~~LSGGqrQRva 270 (361)
+.. ...++.+++.+....... ......+..++...++.. +. +..+..+|+|++|+++
T Consensus 61 ~~~-~~~~v~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 61 SHQ-QNRMIMQIAADVAGRYAK---EGYFVILDGVVRPDWLPA-----------------FTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHH---TSCEEEECSCCCTTTTHH-----------------HHTTCSCEEEEEEECCHHHH
T ss_pred hhh-hhHHHHHHHHHHHHHHhc---cCCeEEEeccCcHHHHHH-----------------HHhcCCCeEEEEecCCHHHH
Confidence 654 223566666432210000 000011122222223322 11 2345679999999999
Q ss_pred hhhcc
Q 018083 271 VATTF 275 (361)
Q Consensus 271 IArAL 275 (361)
+||++
T Consensus 120 ~~R~~ 124 (191)
T 1zp6_A 120 IERCL 124 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 103
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.40 E-value=1.3e-14 Score=145.41 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=54.5
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++++++++.|+.. .+ |+++ +. .+|++++|+||||||||||+++|+|++. |++|.|.+.+.++.
T Consensus 143 ~~~l~~Lg~~~~~~---~~---L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 143 RLDLHSLGMTAHNH---DN---FRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp CCCGGGSCCCHHHH---HH---HHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred CCCHHHcCCCHHHH---HH---HHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 57899999888542 45 5558 64 8999999999999999999999999999 88999999987764
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.40 E-value=3.8e-14 Score=154.01 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=76.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc-ceeeecccccCcceEeEeeeecCCCcceeeeecCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~-G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~ 185 (361)
++|++|++++|++++|+||||||||||+|+|+++.- ... |. + +
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----~aq~g~-~-----v------------------------- 706 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----MAQIGS-Y-----V------------------------- 706 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----HHHHTC-C-----B-------------------------
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----HhhcCc-c-----c-------------------------
Confidence 566999999999999999999999999999988754 211 10 0 0
Q ss_pred CCcccccchHHHHHHHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 186 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 186 ~i~~v~q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
+.... . ...+..++..+++.+. +.+..+++|+||
T Consensus 707 -----pa~~~----------~--------------i~~~d~i~~~ig~~d~-----------------l~~~~stfs~em 740 (918)
T 3thx_B 707 -----PAEEA----------T--------------IGIVDGIFTRMGAADN-----------------IYKGRSTFMEEL 740 (918)
T ss_dssp -----SSSEE----------E--------------EECCSEEEEEC---------------------------CCHHHHH
T ss_pred -----cchhh----------h--------------hhHHHHHHHhCChHHH-----------------HHHhHHHhhHHH
Confidence 00000 0 0001223445555553 256678999999
Q ss_pred hhhhhhhhcc--------CCCceeec------------------CCccEEEEEc-Cccccccchh
Q 018083 266 QYNQIVATTF--------NCPYLSFR------------------DDKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 266 rQRvaIArAL--------DEPt~~L~------------------~g~tvIiiTH-~~~~~~aDri 303 (361)
+|++.|+++. |||++|++ .|+|+|++|| .++..+||+.
T Consensus 741 ~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 741 TDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9999999875 99999953 2899999999 5666788876
No 105
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.39 E-value=8.4e-15 Score=141.32 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=85.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccc---cccccceeeecccccCcceEeEeeeecCCCcceeeeecCC----CCcc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDK---FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS----LSDD 189 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~---~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~----~i~~ 189 (361)
-++++|+|+||||||||+|.|.|+..+.. ..|+.|+|.++|..+.... ..-..+... -++- +.+. .+++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~-~~~~el~~g--Cicc-~~~~~~~~~l~~ 79 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA-TQIKTLTNG--CICC-SRSNELEDALLD 79 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTS-CEEEEETTS--CEEE-CTTSCHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCC-CCEEEECCC--ceEE-cccHHHHHHHHH
Confidence 47899999999999999999999871100 0189999999998764210 000111100 0000 0111 1111
Q ss_pred c---ccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhh
Q 018083 190 A---SDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 265 (361)
Q Consensus 190 v---~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGq 265 (361)
+ +|+..++.. ++.+++.++ ......+.. ...-... ...+++.++.+||...+.+++. +||+||
T Consensus 80 l~~~~q~~~~~~~~~v~E~~~l~-------~p~~~~~~~---~~~~~~~--~~~~l~~~l~~vd~~~~~~~~~-~ls~g~ 146 (318)
T 1nij_A 80 LLDNLDKGNIQFDRLVIECTGMA-------DPGPIIQTF---FSHEVLC--QRYLLDGVIALVDAVHADEQMN-QFTIAQ 146 (318)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTC-------CHHHHHHHH---HHSHHHH--HHEEEEEEEEEEETTTHHHHHH-HCHHHH
T ss_pred HHhHHhcCCCCCCEEEEeCCCCC-------CHHHHHHHH---hcCcccc--CeEEECCEEEEEEHHHHHHHHh-hchHHH
Confidence 1 111110000 111111111 001100000 0000000 1124566788999987766665 899999
Q ss_pred hhhhhhhhcc-------CCCcee-------ecCCccEEEEEc
Q 018083 266 QYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 293 (361)
Q Consensus 266 rQRvaIArAL-------DEPt~~-------L~~g~tvIiiTH 293 (361)
+||+..++++ ||| .. +.++.||+++||
T Consensus 147 ~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 147 SQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred HHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 9999999998 677 22 346899999999
No 106
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=1.2e-14 Score=139.41 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=80.7
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee---cccccCcceEeEeeeecCCCcceeeeecCCCCcc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 189 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~ 189 (361)
++.+|++++|+||||||||||+|+|+ +.+ |++|+|.+ +|++++... + ... ...+++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~------------~~~-~~~~g~ 219 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--R------------LIP-FGKGSF 219 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--E------------EEE-ETTTEE
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--E------------EEE-cCCCcE
Confidence 45679999999999999999999999 998 99999999 888765211 0 011 113556
Q ss_pred cccchHH-----HHH-HHHhcc--cccee-----EEec-CCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhh
Q 018083 190 ASDNINM-----IKL-WIMEGV--RHGEL-----VIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 255 (361)
Q Consensus 190 v~q~~~l-----~~~-ti~~ni--~~~~~-----~~~~-~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~ 255 (361)
++|++.+ ++. ++ +|+ .|+.. .... ....+...++.++++.++|.+. .++
T Consensus 220 v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~ 282 (302)
T 2yv5_A 220 VGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYK 282 (302)
T ss_dssp EESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHH
T ss_pred EEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHH
Confidence 6666532 122 45 666 44310 0111 1234456778899999999752 358
Q ss_pred hccCCchhhhhhhhhhhhc
Q 018083 256 SMEGDSDVEKQYNQIVATT 274 (361)
Q Consensus 256 ~~~~~LSGGqrQRvaIArA 274 (361)
+++..|||.+++++.|||-
T Consensus 283 ~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 283 SYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp HHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999998999999983
No 107
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.37 E-value=7.4e-15 Score=159.47 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=72.1
Q ss_pred hcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC--------
Q 018083 224 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-------- 284 (361)
Q Consensus 224 v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~-------- 284 (361)
..+.|..+||... .+++++.+||||||||++||||| ||||++|++
T Consensus 444 ~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 444 RLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp HHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH
Confidence 3456788898752 14889999999999999999998 999999753
Q ss_pred --------CccEEEEEcC-ccccccchhhHhh------hhhhhcCCCCccccccCCCC
Q 018083 285 --------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPES 327 (361)
Q Consensus 285 --------g~tvIiiTH~-~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~~~ 327 (361)
|.|||+|||+ +....||+|+ +| ++|++++.|++++++..+..
T Consensus 508 ~L~~L~~~G~TvivVtHd~~~~~~aD~ii-~lgpgag~~~G~iv~~G~~~e~~~~~~~ 564 (916)
T 3pih_A 508 TLKKLRDLGNTVIVVEHDEEVIRNADHII-DIGPGGGTNGGRVVFQGTVDELLKNPDS 564 (916)
T ss_dssp HHHHTTTTTCEEEEECCCHHHHHTCSEEE-EEESSSGGGCSEEEEEECHHHHHHSCTT
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEE-EEcCCcccCCCEEEEeechhhhhcCchh
Confidence 8999999993 4445699995 58 89999999999999876653
No 108
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.36 E-value=9.1e-14 Score=135.11 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=87.6
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 192 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v~q 192 (361)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.++....... ....+..+..+.+++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~r~~a~e---------ql~~~~~~~gv~~v~q 190 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTFRAGAIE---------QLEEHAKRIGVKVIKH 190 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCSSTTHHH---------HHHHHHHHTTCEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeecccccchHH---------HHHHHHHHcCceEEec
Confidence 558999999999999999999999999999 99999999998864100000 0000011112335667
Q ss_pred chHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhh
Q 018083 193 NINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 271 (361)
Q Consensus 193 ~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaI 271 (361)
...+.+. ++.+|+.++... ..-.-+++..|+.+. ......+||+ |
T Consensus 191 ~~~~~p~~~v~e~l~~~~~~----------~~d~vliDtaG~~~~-----------------~~~l~~eL~~-------i 236 (328)
T 3e70_C 191 SYGADPAAVAYDAIQHAKAR----------GIDVVLIDTAGRSET-----------------NRNLMDEMKK-------I 236 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHH----------TCSEEEEEECCSCCT-----------------TTCHHHHHHH-------H
T ss_pred cccCCHHHHHHHHHHHHHhc----------cchhhHHhhccchhH-----------------HHHHHHHHHH-------H
Confidence 6655555 777887653210 000112444454331 1333444543 6
Q ss_pred hhcc--CCCceeecC-----------------CccEEEEEc-Cccccccchh
Q 018083 272 ATTF--NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 272 ArAL--DEPt~~L~~-----------------g~tvIiiTH-~~~~~~aDri 303 (361)
+|++ |||+..+|. +.|+|++|| +...+...-+
T Consensus 237 ~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l 288 (328)
T 3e70_C 237 ARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAAL 288 (328)
T ss_dssp HHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHH
T ss_pred HHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHH
Confidence 7776 788766542 889999999 5544444433
No 109
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.35 E-value=9.7e-14 Score=136.42 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=79.0
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec-ccccCcceEeEeeeecCCCcceeeeecCC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 185 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~-G~~i~~~~~~~~~~i~~~~~~~~~~d~r~ 185 (361)
++++++.+ +|++++|+||||||||||+|+|+|+... |++|+|.++ |..... ....
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~t-------------------t~~~ 261 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQHT-------------------TTAA 261 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC--------------------------------CCC
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCccc-------------------eEEE
Confidence 45577754 7999999999999999999999998851 578999886 644320 0111
Q ss_pred CCcccccchHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhh
Q 018083 186 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 264 (361)
Q Consensus 186 ~i~~v~q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGG 264 (361)
.+++++|+..++.. ++.++... ..+..+..+.+.++++.+++.. +.+..+.+|| |
T Consensus 262 ~i~~v~q~~~l~dtpgv~e~~l~------~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G 317 (358)
T 2rcn_A 262 RLYHFPHGGDVIDSPGVREFGLW------HLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-G 317 (358)
T ss_dssp EEEECTTSCEEEECHHHHTCCCC------CCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-T
T ss_pred EEEEECCCCEecCcccHHHhhhc------CCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-H
Confidence 23444554433322 44443211 2233456677888999999987 4588999999 9
Q ss_pred hhhhhhhhhccC
Q 018083 265 KQYNQIVATTFN 276 (361)
Q Consensus 265 qrQRvaIArALD 276 (361)
|+||++||+++.
T Consensus 318 ~~~r~ala~gli 329 (358)
T 2rcn_A 318 CAIREAVENGAI 329 (358)
T ss_dssp CHHHHHHHHTSS
T ss_pred HHHHHHHHhcCC
Confidence 999999999983
No 110
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.32 E-value=2.8e-14 Score=126.37 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccc---cceeeecccccC
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGD 161 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~---~G~I~i~G~~i~ 161 (361)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccc
Confidence 5799999999999999999999999 87 899999998753
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.32 E-value=1.9e-13 Score=120.62 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
|++++|+||||||||||+++|++ +.+|.++++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 78999999999999999999986 3468899988665
No 112
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.29 E-value=1.8e-14 Score=129.29 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999999999998
No 113
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.28 E-value=6.1e-14 Score=137.75 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=54.3
Q ss_pred ccccceee---ecCcceeeccc------cceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 87 DAKNKILS---YTPGAWIENVG------GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 87 ei~nl~~~---Y~~~~~~~~l~------~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
++++++|+ |++.. .+++. -++++||.|++|++++|+||||||||||+++|+|+++ |++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~~-~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~ 210 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFE-QELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIED 210 (361)
T ss_dssp TTSCCCCSCSCCCHHH-HHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEES
T ss_pred CcCccccccccccchh-HHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECC
Confidence 78899988 85421 12320 0255999999999999999999999999999999999 9999999987
Q ss_pred c
Q 018083 158 S 158 (361)
Q Consensus 158 ~ 158 (361)
.
T Consensus 211 ~ 211 (361)
T 2gza_A 211 V 211 (361)
T ss_dssp S
T ss_pred c
Confidence 4
No 114
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.27 E-value=1.1e-13 Score=132.61 Aligned_cols=123 Identities=12% Similarity=-0.030 Sum_probs=74.4
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee---cccccCcceEeEeeeecCCCcceeeeec-CCCC
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDT-RSLS 187 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~~~~~~~~~~i~~~~~~~~~~d~-r~~i 187 (361)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|++++... +...+ ....+.++.. ....
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~~~~--~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QLLKF--DFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CEEEC--TTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EEEEc--CCCCEEEECcCCCcc
Confidence 4567899999999999999999999999999 99999999 888765211 11111 1123333332 1223
Q ss_pred cccccc----hHHHHH-HHHhccccceeEEecCCChhhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCch
Q 018083 188 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 262 (361)
Q Consensus 188 ~~v~q~----~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LS 262 (361)
++++|+ ..+|+. ++ +|+.++... ...+...++.++|+.++|.+. .++++|.+||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~----~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCN----HVDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCC----SSSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCc----CCCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 444554 335555 66 888876421 124456778899999999632 4689999999
Q ss_pred hh
Q 018083 263 VE 264 (361)
Q Consensus 263 GG 264 (361)
+=
T Consensus 294 e~ 295 (301)
T 1u0l_A 294 EL 295 (301)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=2.3e-13 Score=136.33 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=36.6
Q ss_pred ccccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 83 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 83 ~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+++||++.|+.. .+ +++++|+| +|+||||||||||+|+|+|+..
T Consensus 9 ~~~l~~~~l~~~y~~~---~v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 9 EGYVGFANLPNQVYRK---SV---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ------CCCCCCTTTT---TC---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cCcEEEEecceeECCE---EE---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 3579999999999763 46 55599987 9999999999999999999987
No 116
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.26 E-value=1.1e-13 Score=149.19 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=73.4
Q ss_pred hhhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC---
Q 018083 219 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--- 284 (361)
Q Consensus 219 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~--- 284 (361)
++.+++. .+..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 355 ei~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~ 417 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADT 417 (842)
T ss_dssp HHHHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHH
Confidence 4455555 5778999752 15899999999999999999998 999999753
Q ss_pred -------------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 -------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 -------------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|.|||+|+| .++...||+|+ +| ++|+++..|+++++...+
T Consensus 418 ~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii-~lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 418 EALLSALENLKRGGNSLFVVEHDLDVIRRADWLV-DVGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEE-EECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEE-EeCCCcccCCCEEEEecCHHHHHhch
Confidence 899999999 34556799995 58 799999999999987764
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.25 E-value=4.6e-13 Score=120.39 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=42.6
Q ss_pred ceeccC-CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 107 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 107 L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
|+++.+ .|++|++++|+||||||||||++.|++... +..|.|.+.+.+.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTTEE 61 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEESSS
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEccc
Confidence 444888 899999999999999999999999999988 7888888776543
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=8.3e-14 Score=139.71 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=39.7
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceE--EEEEccCCCCcchhhhhhhhhh
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~--vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+++++ ++.|++. + +++ +||+|++|++ ++|+||||||||||+|+|+|+.
T Consensus 16 ~l~~~~-~~~y~~~---~-L~~---vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSL---P-DQL---VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHH---HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCe---e-cCC---CceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 578888 8999652 3 555 9999999999 9999999999999999999985
No 119
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.18 E-value=1.8e-13 Score=132.53 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=55.6
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCc-------eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~G-------e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
.+++.++++..|+.. .+ ++++++.|.+| +.++|+||||||||||+++|++.+.. .+.+++|.+..+
T Consensus 17 ~~lr~~~l~~~~g~~---~~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQE---NV---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCH---HH---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTTCCS
T ss_pred HHcCCccHHHccCcH---HH---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechHhcC
Confidence 468889999989753 45 55599999887 89999999999999999999999821 112788988877
Q ss_pred cccc
Q 018083 157 SSVG 160 (361)
Q Consensus 157 G~~i 160 (361)
+.++
T Consensus 90 ~~~l 93 (334)
T 1in4_A 90 QGDM 93 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.17 E-value=1.2e-11 Score=121.32 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=42.8
Q ss_pred cceeeecCcceeeccccceeccC-------CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeecc
Q 018083 90 NKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 157 (361)
Q Consensus 90 nl~~~Y~~~~~~~~l~~L~~is~-------~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G 157 (361)
.++++|-+.. ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 93 ~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 93 GAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred EEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 4555553322 234 444666 678888999999999999999999999998 77 45664433
No 121
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.16 E-value=2.6e-13 Score=128.32 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=41.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++++++++++| ++|+||||||||||+++|+|... + +.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 56699999999 99999999999999999999987 5 68899887764
No 122
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.16 E-value=6e-12 Score=123.03 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=54.9
Q ss_pred ceec-cCCCCCceEEEEEccCCCCcchhhhhhhhhh--ccccccccc----ce-eeecccccCcceEeEeeeecCCCcce
Q 018083 107 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSVGDGTYFLQEYTIPRGSNSF 178 (361)
Q Consensus 107 L~~i-s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~--~~~~~~p~~----G~-I~i~G~~i~~~~~~~~~~i~~~~~~~ 178 (361)
|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++.+..
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~~~----------------- 177 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTENTF----------------- 177 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSSCC-----------------
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCCCC-----------------
Confidence 3335 7899999999999999999999999999998 5 666 57 788775431
Q ss_pred eeeecCCCCcccccchHHHHHHHHhccccc
Q 018083 179 SLYDTRSLSDDASDNINMIKLWIMEGVRHG 208 (361)
Q Consensus 179 ~~~d~r~~i~~v~q~~~l~~~ti~~ni~~~ 208 (361)
.+..+.+++|...++..++.+|+.+.
T Consensus 178 ----~~~~i~~i~q~~~~~~~~v~~ni~~~ 203 (349)
T 1pzn_A 178 ----RPERIREIAQNRGLDPDEVLKHIYVA 203 (349)
T ss_dssp ----CHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred ----CHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence 01123445555555555777887754
No 123
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.16 E-value=6e-12 Score=135.27 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6679999 9999999999999999999999999864
No 124
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.15 E-value=2e-12 Score=140.34 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=71.8
Q ss_pred hhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----
Q 018083 220 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 284 (361)
Q Consensus 220 ~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~---- 284 (361)
+.+++ +.|..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 481 i~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 543 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDND 543 (972)
T ss_dssp HHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred HHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHH
Confidence 34444 45788898751 14899999999999999999997 999999763
Q ss_pred ------------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|.|||+|+| .+....||+|+ +| ++|++++.|++++++..+
T Consensus 544 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi-~LgpgaG~~gG~iv~~G~~~e~~~~~ 602 (972)
T 2r6f_A 544 RLIATLKSMRDLGNTLIVVEHDEDTMLAADYLI-DIGPGAGIHGGEVVAAGTPEEVMNDP 602 (972)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEE-EECSSSGGGCCSEEEEECTTTTTTCT
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EeCCCccCCCCEEEEecCHHHHHhhh
Confidence 899999999 33446799995 58 899999999999987754
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.14 E-value=1.3e-11 Score=121.66 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=40.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccc-cceeeeccccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVG 160 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~-~G~I~i~G~~i 160 (361)
|++++ +++|++++|+||||||||||+++|+|+++ |+ +|.|.+.+.++
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPI 175 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSC
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccH
Confidence 44454 89999999999999999999999999999 87 89998777544
No 126
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.09 E-value=2.8e-11 Score=123.12 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 6669999999 9999999999999999999999999 99999999998875
No 127
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.08 E-value=3.9e-12 Score=138.49 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=71.2
Q ss_pred hhhhhcccccccCCCcceeEEEEEEEEEEechhhhhhccCCchhhhhhhhhhhhcc-----------CCCceeecC----
Q 018083 220 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD---- 284 (361)
Q Consensus 220 ~~~~v~~~l~~~gl~~~~~~~~~~~~~vv~~~~~~~~~~~~LSGGqrQRvaIArAL-----------DEPt~~L~~---- 284 (361)
+.+++ +.|..+||... .+++.+.+|||||+||++||++| ||||++|++
T Consensus 498 i~~Rl-~~L~~vGL~~l----------------~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~ 560 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYL----------------SLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNR 560 (993)
T ss_dssp HHHHH-HHHHHHTGGGS----------------CTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHH
T ss_pred HHHHH-HHHhhCCCCcc----------------ccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHH
Confidence 34444 34788888751 15889999999999999999997 999999753
Q ss_pred ------------CccEEEEEc-CccccccchhhHhh------hhhhhcCCCCccccccCC
Q 018083 285 ------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 325 (361)
Q Consensus 285 ------------g~tvIiiTH-~~~~~~aDri~vvl------~~G~iv~~g~~~~i~~~~ 325 (361)
|.|||+|+| .+....||+|+ +| ++|++++.|+++++...+
T Consensus 561 ~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi-~Lgp~aG~~gG~iv~~G~~~e~~~~~ 619 (993)
T 2ygr_A 561 RLIETLTRLRDLGNTLIVVEHDEDTIEHADWIV-DIGPGAGEHGGRIVHSGPYDELLRNK 619 (993)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEE-EECSSSGGGCCSCCEEECHHHHHHCT
T ss_pred HHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEE-EecCccccCCCEEEEeeCHHHhhhhh
Confidence 899999999 33456799995 58 799999999999887754
No 128
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.06 E-value=2.6e-11 Score=129.74 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 5669999 99999999999999999999999874
No 129
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.05 E-value=4.9e-11 Score=107.34 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=38.0
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhccccccc---ccceeeecccccC
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVGD 161 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p---~~G~I~i~G~~i~ 161 (361)
.++|++++|+||||||||||+++|+|+++ | ..|.|.++|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcCC
Confidence 58899999999999999999999999998 5 4788888886653
No 130
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.01 E-value=2.5e-11 Score=116.41 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=56.6
Q ss_pred hccccccccceeeecCcceeeccccceeccCCC-------------------CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I-------------------~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...+|++++|++.|+ ++ +++++|.+ .+|+++||+||||||||||+++|+|++.
T Consensus 34 ~~~~i~~~~v~~~y~-----~~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PL---SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HH---HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CccccchHhHHHHHH-----HH---HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999994 34 56699988 9999999999999999999999999985
Q ss_pred ccccccccceeee---ccccc
Q 018083 143 NDKFASERAQVTY---NSSVG 160 (361)
Q Consensus 143 ~~~~~p~~G~I~i---~G~~i 160 (361)
.. |++|+|.+ +|...
T Consensus 106 ~~---~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 106 RW---PEHRRVELITTDGFLH 123 (308)
T ss_dssp TS---TTCCCEEEEEGGGGBC
T ss_pred hC---CCCCeEEEEecCCccC
Confidence 11 57899999 77553
No 131
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=3e-12 Score=123.38 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee---cccccC
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGD 161 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i---~G~~i~ 161 (361)
+++.+|++++|+||||||||||+|+|+|+.+ |.+|+|.+ +|+..+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccc
Confidence 7788999999999999999999999999999 99999998 777654
No 132
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.99 E-value=2.3e-10 Score=101.50 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=48.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccCcceEeEeeeecCCCcceeeeecCCCCccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 190 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i~~v 190 (361)
|+++++|++++|+||||||||||+++|+|++ | .+.+.+..+.. ......+..++++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~~---------------~~~~~~~~~~~~~ 56 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTTR---------------PKRPGDQEGVDYF 56 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEECS---------------CCCTTCCBTTTBE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceeccC---------------CCchhHhcCceEE
Confidence 5778899999999999999999999999996 3 35555544320 0001123457889
Q ss_pred ccchHHHHH-HHHhcccc
Q 018083 191 SDNINMIKL-WIMEGVRH 207 (361)
Q Consensus 191 ~q~~~l~~~-ti~~ni~~ 207 (361)
+|++..+.. ++.+++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 57 FIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ECCHHHHHHHHHHTCEEE
T ss_pred eccHHHHHHHHhcCcEEe
Confidence 999888777 55566544
No 133
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.99 E-value=1.3e-10 Score=109.26 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.|++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999999999765
No 134
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.97 E-value=2e-10 Score=105.25 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=52.8
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccc--ccceeeecccccCcceEeEeeeecCCCcceeeeecCCCC
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS 187 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p--~~G~I~i~G~~i~~~~~~~~~~i~~~~~~~~~~d~r~~i 187 (361)
-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+.. . ..+..+
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~~~---------------~----~e~~gi 64 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQPR---------------P----GEVHGE 64 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSCCC---------------T----TCCBTT
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCCCC---------------c----ccccCc
Confidence 444679999999999999999999999999998 6 6788888775432 0 113457
Q ss_pred cccccchHHHHH-HH----Hhcccc
Q 018083 188 DDASDNINMIKL-WI----MEGVRH 207 (361)
Q Consensus 188 ~~v~q~~~l~~~-ti----~~ni~~ 207 (361)
+|+||+..+|.. ++ .+++.+
T Consensus 65 ~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 65 HYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp TBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred eEEECCHHHHHHHHhcCHHHHHHHH
Confidence 889999988877 55 355543
No 135
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.94 E-value=8.4e-11 Score=101.62 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=45.0
Q ss_pred hhhccCCchhhhhhhhhhh------hcc---------CCCceeecC----------------CccEEEEEc-Cccccccc
Q 018083 254 LKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 301 (361)
Q Consensus 254 ~~~~~~~LSGGqrQRvaIA------rAL---------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aD 301 (361)
.++++.+||||||||++|| ||| ||||++||. |.|||++|| ..+..+||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 3678999999999999886 666 999999753 789999999 55678899
Q ss_pred hhhHhhh
Q 018083 302 RARIRTY 308 (361)
Q Consensus 302 ri~vvl~ 308 (361)
+++ +|+
T Consensus 131 ~ii-~l~ 136 (148)
T 1f2t_B 131 HVI-RIS 136 (148)
T ss_dssp EEE-EEE
T ss_pred EEE-EEE
Confidence 995 474
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.93 E-value=2.2e-10 Score=114.68 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-++++|+++.|+.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
No 137
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.91 E-value=7.6e-11 Score=108.76 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=47.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++++.+.|+.. .+ ++++++++++| ++|+||||||||||+++|++... .|.+.+++.++
T Consensus 26 ~~l~~l~~~~~~~---~~---~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 26 EELKEIVEFLKNP---SR---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHHCH---HH---HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHHCH---HH---HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 3455666666432 34 55699999999 99999999999999999999875 57788877654
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.91 E-value=7.7e-11 Score=112.49 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=26.9
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++.+++|+||+|||||||+++|.+++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35678999999999999999999999998
No 139
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.91 E-value=8.3e-11 Score=106.75 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhh--hhccccccc-----ccceeeecccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFAS-----ERAQVTYNSSV 159 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~g--l~~~~~~~p-----~~G~I~i~G~~ 159 (361)
-|++|++++|+||||||||||++.|++ +.+ | ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP-----IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc-----hhcCCCCCeEEEEECCC
Confidence 689999999999999999999999999 454 4 46778887755
No 140
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.90 E-value=7.4e-11 Score=110.67 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=46.4
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+++++.+.|+.. .+ ++++++++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 51 ~l~~l~~~~~~~---~~---l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 51 ELKEIVEFLKNP---SR---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHHCH---HH---HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHCH---HH---HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 345555556432 34 56699999999 89999999999999999999885 57888887654
No 141
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.89 E-value=2.8e-11 Score=111.57 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.6
Q ss_pred CceEEEEEccCCCCcchhhhhhh---hhhcccccccccceeeecccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~---gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++++++|+||||||||||+++|+ |+.. |+.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 36899999999999999999999 9988 999999988754
No 142
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.87 E-value=3.1e-10 Score=101.36 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=35.0
Q ss_pred ceeccC-CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 107 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 107 L~~is~-~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
|+.+.. .|++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 344665 799999999999999999999999999 4 4445555544
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.85 E-value=6.2e-10 Score=101.41 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhh-hhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~-gl~~ 142 (361)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 55699999999999999999999999999999 9986
No 144
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.72 E-value=1.2e-09 Score=102.24 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=34.9
Q ss_pred cccccccc-eeeecCcceeeccccceeccCCCCC---ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 84 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 84 ~~lei~nl-~~~Y~~~~~~~~l~~L~~is~~I~~---Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++|+ +++|++. .++ |+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~--~~~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE--QQI---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ------------------CHH---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCc--chh---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 9999332 256 5669999999 99999999999999999999999765
No 145
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.70 E-value=2.6e-10 Score=105.24 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=41.0
Q ss_pred ccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 85 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 85 ~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.|+++|++..|+. +|++.+ ++++|+||||||||||+++|+|++. |++|+|.++|.++.
T Consensus 9 ~l~l~~~~~~~~~-------------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEEE-------------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccCC-------------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 4778887765521 233445 7999999999999999999999999 99999999998864
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.70 E-value=2.5e-09 Score=106.51 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=34.0
Q ss_pred CCCCceEEEEEccCCCCcchhhhh--hhhhhcccccccccc-----eeeecccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERA-----QVTYNSSV 159 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~--I~gl~~~~~~~p~~G-----~I~i~G~~ 159 (361)
-|++|++++|+||||||||||++. +.++.+ ++.| .+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 689999999999999999999994 456666 5444 77777755
No 147
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.68 E-value=2.3e-09 Score=94.92 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=44.3
Q ss_pred hhhhccCCchhhhhhhhhhhhcc-------------CCCceeecC---------------CccEEEEEc-Cccccccchh
Q 018083 253 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 253 ~~~~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri 303 (361)
...+.+..||||||||++||++| |||+++||+ +.++|+||| ......||++
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEE
Confidence 44677889999999999999987 999999763 678999999 5566889999
Q ss_pred h
Q 018083 304 R 304 (361)
Q Consensus 304 ~ 304 (361)
+
T Consensus 137 ~ 137 (173)
T 3kta_B 137 I 137 (173)
T ss_dssp E
T ss_pred E
Confidence 5
No 148
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.60 E-value=5.8e-09 Score=92.98 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred ccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee--eecccccC
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 161 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I--~i~G~~i~ 161 (361)
+|++.+++. +.+.+ ..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~---~~~~~---~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVD---RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHH---HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHH---HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 456665544 35544 4899999999999999999999999999999996 46887 88887664
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.59 E-value=1.3e-08 Score=97.93 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=41.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++++..+|++++|+|||||||||+++.|++++. +..|+|.+.+.|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEcccc
Confidence 677788999999999999999999999999999 8888998877664
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.55 E-value=8.5e-09 Score=105.68 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
++++++.|++|+.++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 445999999999999999999999999999999999 999999999865
No 151
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.52 E-value=2.7e-08 Score=86.67 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=35.4
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
++++|++.+| +.+|+||||||||||+++|.+++. +..|...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~ 58 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-----GLSAKAM 58 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-----CCCTGGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-----CCccccc
Confidence 4588999999 999999999999999999999998 6555443
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.51 E-value=2.8e-08 Score=88.82 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999985
No 153
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.48 E-value=3.5e-08 Score=87.85 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.4
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.++.++|++++|+||||||||||+++|++.+ |.+.+++.++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~ 64 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAFH 64 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGS
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccccc
Confidence 4567889999999999999999999999976 56778776653
No 154
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.43 E-value=6.5e-08 Score=85.44 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4789999999999999999999999999997
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.41 E-value=3.9e-08 Score=100.71 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=40.1
Q ss_pred eccCCCCCceEEEEEccCCCCcchhhhhhhh--hhcccccccccceeeecccccC
Q 018083 109 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 109 ~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g--l~~~~~~~p~~G~I~i~G~~i~ 161 (361)
-+.+++.++..++|.|++||||||++++|.. ++. ++.+++.+.+.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 3778888999999999999999999999876 455 66788888777754
No 156
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=7.5e-08 Score=92.35 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=27.5
Q ss_pred eEEEEEccCCCCcchhhhhhhh-hhcccccccccceeeeccccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g-l~~~~~~~p~~G~I~i~G~~i 160 (361)
..++|.||+|+|||||+++|++ ++. |+.|.+.++|.+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQF 75 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC--------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceee
Confidence 3489999999999999999999 777 8899999988664
No 157
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.38 E-value=3.8e-08 Score=100.59 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=45.2
Q ss_pred hhccCCc-hhhhhhhhhhhhcc-----------CCCceeecC---------------CccEEEEEc-CccccccchhhHh
Q 018083 255 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 306 (361)
Q Consensus 255 ~~~~~~L-SGGqrQRvaIArAL-----------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri~vv 306 (361)
.+++..| ||||+||++||||| ||||++||. +.|||+||| ..++..||+++ +
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~-~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY-K 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEE-E
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-E
Confidence 3567788 99999999999987 999999764 889999999 34556799996 5
Q ss_pred hhhh
Q 018083 307 TYLG 310 (361)
Q Consensus 307 l~~G 310 (361)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8655
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1e-07 Score=84.77 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=25.7
Q ss_pred eecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 94 SYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 94 ~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.++....+ ++++||++++|.+++|+||+||||||+.+.|++.+.
T Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 5 HHHSSGVDLG---TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCCCC---CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4554443345 556999999999999999999999999999998774
No 159
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.35 E-value=7.3e-08 Score=89.38 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=38.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhh---hhhcccccccccceee--------eccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~---gl~~~~~~~p~~G~I~--------i~G~~i 160 (361)
++|++++|+|||||||||++++|+ |+.. +++|.++ .+|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCc
Confidence 789999999999999999999999 9888 9999999 777765
No 160
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.34 E-value=1.3e-07 Score=83.26 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=24.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999997
No 161
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.34 E-value=1.4e-07 Score=89.87 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=52.4
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.+..
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 5678888888642 1338888 899999999999999999999999999 88899999988764
No 162
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.33 E-value=1.7e-07 Score=82.13 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhccccccc-ccceeeec
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYN 156 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p-~~G~I~i~ 156 (361)
.+|++++|+||||||||||+++|.+.++ + ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~-----~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP-----DRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT-----TTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC-----ccEEEeeecc
Confidence 3689999999999999999999999986 3 45666543
No 163
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.33 E-value=2.1e-07 Score=82.96 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
...++|++++|+|+||||||||+++|++++. +..|.|.+.+.+.
T Consensus 17 ~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp SCCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred hccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 3568899999999999999999999999998 8888988877664
No 164
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.31 E-value=1.6e-07 Score=95.91 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=39.2
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++++++++++| ++|+||+|||||||+++|++... .+-+.+++.++.
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~ 101 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFV 101 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGT
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHH
Confidence 55599999999 89999999999999999999875 467788776653
No 165
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=1.8e-07 Score=81.50 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 151 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G 151 (361)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56778899999999999999999999999998 7766
No 166
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.26 E-value=3.9e-07 Score=87.94 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.4
Q ss_pred eeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 108 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 108 ~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
++++|++++|++++|+|||||||||++..|++.+. +..|+|.+.+.|..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 45999999999999999999999999999999999 88899999888764
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.23 E-value=5.9e-07 Score=76.98 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.1
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeeccccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 160 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 160 (361)
+|+.++|+||||||||||+++|++.+. + +| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHHh
Confidence 899999999999999999999999997 5 46 566665443
No 168
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.22 E-value=1.9e-07 Score=90.61 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=55.3
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+++.+++.+.|+.. .+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..++|.+-+.+.
T Consensus 29 ~~ie~~~~~~~~~~~---~~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 29 TLVESRHPRHQALST---QL---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHHHCCCHHHHHHHH---HH---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred hHhhcCCchhhhHHH---HH---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 367888888887542 45 555999999999999999999999999999999998 7788888776655
No 169
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.22 E-value=7.2e-08 Score=93.27 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=44.3
Q ss_pred ccceeeecCcceeeccccceeccCCCCCce------EEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 89 KNKILSYTPGAWIENVGGMTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 89 ~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge------~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
+.+++.|+.. ++ |++++..+.++. ++||+||||||||||+++|.+++... |+.|.+.+-+.+
T Consensus 64 rll~~~~~~~---~~---l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~~D 131 (321)
T 3tqc_A 64 RLLSFYVTAR---QT---LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHH---HH---HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEEGG
T ss_pred HHHHHhhcch---HH---HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEeec
Confidence 4455566543 44 444777777766 99999999999999999999999721 356665544443
No 170
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.21 E-value=6.2e-07 Score=81.70 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=36.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
-+.+.++|++++|+|+||||||||+++|+++ .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 5567899999999999999999999999987 37788887764
No 171
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.20 E-value=1.2e-06 Score=85.27 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=42.9
Q ss_pred ccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhh--hhcccccccccceeeecc
Q 018083 87 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNS 157 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g--l~~~~~~~p~~G~I~i~G 157 (361)
+++++...|+......+ |++++++++ .++|+|++|||||||+++|.| +++ +.+|.+.-..
T Consensus 10 ~l~~~~~~~~~~~~~~~---l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~~p 71 (360)
T 3t34_A 10 KIQRACTALGDHGDSSA---LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTRRP 71 (360)
T ss_dssp HTTTTTTSCSSCCSSCC---C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCCSC
T ss_pred HHHHHHHhhCccccccc---cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccCcc
Confidence 57788888875322245 555999998 899999999999999999999 556 6666665443
No 172
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.14 E-value=1.2e-06 Score=76.94 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=33.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhccccccc------ccceeeeccccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 160 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 160 (361)
-.++|+|+||||||||+++++|......+.| ++|.|.++|.++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 4789999999999999999999876221112 578888887654
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.12 E-value=1e-07 Score=93.39 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=34.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee-eeccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 158 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G~ 158 (361)
-|++|+++.|.||+|||||||+..++.... +..|.+ ++++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 588999999999999999999999999987 666766 44443
No 174
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.08 E-value=1.4e-06 Score=78.19 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999999999987
No 175
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.08 E-value=1.2e-06 Score=87.17 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=42.5
Q ss_pred hccCCchhhhhhhhhhhhcc-------------CCCceeecC----------------CccEEEEEc-CccccccchhhH
Q 018083 256 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 305 (361)
Q Consensus 256 ~~~~~LSGGqrQRvaIArAL-------------DEPt~~L~~----------------g~tvIiiTH-~~~~~~aDri~v 305 (361)
+.+..||||||||++||++| |||+++||. +.++|++|| ......||++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 44567999999999999987 999999753 579999999 455678999954
Q ss_pred hhh
Q 018083 306 RTY 308 (361)
Q Consensus 306 vl~ 308 (361)
+.
T Consensus 409 -~~ 410 (430)
T 1w1w_A 409 -VY 410 (430)
T ss_dssp -EE
T ss_pred -EE
Confidence 54
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.08 E-value=8.7e-07 Score=87.46 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 555999999999999999999999999999998664
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.06 E-value=7.1e-07 Score=92.25 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eee-eccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSVG 160 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~-i~G~~i 160 (361)
.+++|++++|+|+||||||||+++|++.+. |++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 678999999999999999999999999998 8886 674 777654
No 178
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.04 E-value=2.1e-06 Score=85.04 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=48.9
Q ss_pred hccccccccceeeecCcceeeccccce--------------eccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 82 IGSLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 82 ~~~~lei~nl~~~Y~~~~~~~~l~~L~--------------~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...-++++||++.|+... .. |+ |+.+.|.+|+.++|+||+|||||||++.|++...
T Consensus 130 ~~~ri~Fe~ltp~yP~er--~~---Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANSR--LR---MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCSB--CC---CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCCc--cc---cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 455689999999998754 33 66 6999999999999999999999999999999875
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.03 E-value=2.3e-06 Score=73.76 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 578999999999999999999999875 4566766554
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.02 E-value=2.4e-06 Score=75.09 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=30.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhccccccc------ccceeeeccccc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 160 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p------~~G~I~i~G~~i 160 (361)
.++|+|+||||||||+++|+|......+.| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111112 357788877554
No 181
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.02 E-value=6.3e-07 Score=89.29 Aligned_cols=45 Identities=33% Similarity=0.468 Sum_probs=36.5
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+++|+ ++|++ .. ++++.+|++++|+||||||||||+++|++++.
T Consensus 7 l~~~~~-~~~~~---------~~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 7 LELSNF-KSYRG---------VT--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEESC-SSCCS---------EE--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEeCE-EEECC---------ce--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 677888 67754 11 13467789999999999999999999999987
No 182
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.98 E-value=2.6e-06 Score=84.48 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc----cc---ccccccceeeecccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE----ND---KFASERAQVTYNSSV 159 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~----~~---~~~p~~G~I~i~G~~ 159 (361)
.+++|..++|+|+||||||||+|+|+|... .. ...|+.|.|.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcc
Confidence 678999999999999999999999999211 00 012889999988744
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.96 E-value=1.7e-06 Score=77.60 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=30.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhcccccccccceeee
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 155 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i 155 (361)
+.+++|+||+||||||++++|++.+. ...++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g--~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ--WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT--CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCcccCcceee
Confidence 46899999999999999999999872 11178898877
No 184
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.95 E-value=1.5e-06 Score=87.34 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=40.3
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeeccccc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVG 160 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i 160 (361)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.+.+.+.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFSLEM 242 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEESSS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEECCC
Confidence 555888899999999999999999999999999886 5555 676665443
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.95 E-value=1.9e-06 Score=90.84 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
+++++++..++|+|++|||||||+++|.+....- +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 4678999999999999999999999999877511 367887 555443
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.92 E-value=3.6e-06 Score=75.90 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.1
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+...+|++++|+||||||||||+++|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999875
No 187
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.89 E-value=1.8e-06 Score=84.50 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred hccCCchhhhhhhhhh------hhcc----------CCCceeecC---------------CccEEEEEc-Cccccccchh
Q 018083 256 SMEGDSDVEKQYNQIV------ATTF----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 303 (361)
Q Consensus 256 ~~~~~LSGGqrQRvaI------ArAL----------DEPt~~L~~---------------g~tvIiiTH-~~~~~~aDri 303 (361)
.++..|||||+||++| |++| |||+++||. +.+||++|| ..+..+||++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEE
Confidence 5667899999999854 4543 999999753 458999999 4567889999
Q ss_pred hHhhh
Q 018083 304 RIRTY 308 (361)
Q Consensus 304 ~vvl~ 308 (361)
+ +++
T Consensus 356 ~-~l~ 359 (371)
T 3auy_A 356 I-NVK 359 (371)
T ss_dssp E-EEE
T ss_pred E-EEE
Confidence 5 465
No 188
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.87 E-value=5.3e-06 Score=79.16 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=50.1
Q ss_pred ccccceeeecCcceeecccccee-ccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 87 DAKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 87 ei~nl~~~Y~~~~~~~~l~~L~~-is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
-.+++...|++. .++ ++|+++ +.+++++|++|+||||++..|++.+. +..++|.+.+.+..
T Consensus 76 ~~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 76 VYDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 356677777653 345 888877 99999999999999999999999998 88889998887754
No 189
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.85 E-value=4.3e-06 Score=71.72 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.|.+++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999886
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.82 E-value=7.4e-06 Score=79.69 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=37.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
+++.+++|+|++|||||||+|.|.|.+. +..|.|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 4578999999999999999999999998 88899988887654
No 191
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.82 E-value=6.7e-06 Score=78.35 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=35.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccc-eeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G-~I~i~G~~i 160 (361)
.+|++++|+|||||||||+++.|++.+. +++| .|.+-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecCc
Confidence 5789999999999999999999999998 7778 777766554
No 192
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.81 E-value=7.3e-06 Score=71.09 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeeccccc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 160 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 160 (361)
++|++++|+|++||||||++++|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4689999999999999999999999987 5 46 566666544
No 193
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.81 E-value=2.6e-06 Score=87.71 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=48.1
Q ss_pred cccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 86 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 86 lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
.-++++...|.. ..+ +.++++++ +|+.++|+||+|||||||+++|++.+. +..|.|.+.|.
T Consensus 84 ~G~~~vk~~i~~---~~~---l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 84 HGLEKVKERILE---YLA---VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp SSCHHHHHHHHH---HHH---HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred ccHHHHHHHHHH---HHH---HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 334556666643 235 44599999 899999999999999999999999998 88888888764
No 194
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.81 E-value=7.1e-06 Score=72.84 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=29.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+--++++|.+++|+|++|||||||+++|.+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444789999999999999999999999999874
No 195
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.75 E-value=1.4e-05 Score=73.06 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=31.8
Q ss_pred ceeccCCCC---CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 107 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 107 L~~is~~I~---~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
|.++||.+. +|.+++|.||+||||||+++.|...+. + .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCceee
Confidence 555777776 999999999999999999999999998 6 4555443
No 196
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.74 E-value=1.1e-05 Score=72.20 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=38.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccc--eeeeccccc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 160 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G--~I~i~G~~i 160 (361)
.+.+++|.+++|+|++||||||+++.|.+.+. |..| .+.+++..+
T Consensus 19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHH
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChHH
Confidence 35678999999999999999999999999998 7888 778876544
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.74 E-value=1e-05 Score=80.94 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=49.2
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccccC
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 161 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i~ 161 (361)
.+++++.|++. -++++|+ ++++++++|++||||||++..|++.+. +..+.|.+.+.|..
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 45677788653 1238888 889999999999999999999999999 88889999887764
No 198
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.69 E-value=1.2e-05 Score=68.76 Aligned_cols=31 Identities=35% Similarity=0.456 Sum_probs=25.5
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44455566 89999999999999999998655
No 199
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.65 E-value=2.3e-05 Score=76.74 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=21.2
Q ss_pred ceE-EEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTS-LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~-vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|-. ++|+|++|||||||+|+|+|...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 444 99999999999999999998764
No 200
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.64 E-value=5.5e-06 Score=86.19 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=49.6
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccc-ceeeecccccC
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVGD 161 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~-G~I~i~G~~i~ 161 (361)
-++++.-|+.. .+ ++++++.+.+|+.++|+||||||||||+++|+++++ +.. |.+.+++....
T Consensus 37 p~~l~~i~G~~---~~---l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 37 EKLIDQVIGQE---HA---VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPED 100 (604)
T ss_dssp SSHHHHCCSCH---HH---HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTTC
T ss_pred ccccceEECch---hh---HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCccc
Confidence 34444456543 45 455999999999999999999999999999999998 666 77777776543
No 201
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.60 E-value=1e-05 Score=82.58 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=31.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++++|++.+| +.+|+|+||||||||+.+|..++.
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 55699999999 999999999999999999988743
No 202
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.55 E-value=3.8e-05 Score=66.90 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.8
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhccccccccccee-eecc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNS 157 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I-~i~G 157 (361)
-+...+|.+++|+|++||||||+++.|+..+. +..+.+ .+++
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~ 49 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDG 49 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeH
Confidence 34557899999999999999999999999997 666665 3444
No 203
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.52 E-value=2.6e-05 Score=68.65 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=28.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++++|..++. .++|+|++|||||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 55599999988 578999999999999999976
No 204
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.48 E-value=4.1e-05 Score=66.94 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
+|++.+++..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999876
No 205
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=3.2e-05 Score=69.59 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=28.1
Q ss_pred ceec-cCCCCCceEEEEEccCCCCcchhhhhh-hhhhc
Q 018083 107 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFE 142 (361)
Q Consensus 107 L~~i-s~~I~~Ge~vaLvGpnGSGKSTLl~~I-~gl~~ 142 (361)
|+.+ .--+++|++++|+||||||||||+..+ ..+.+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3335 567999999999999999999996655 44444
No 206
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.41 E-value=4.4e-05 Score=67.74 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...+|.+++|+||||||||||++.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456789999999999999999999988775
No 207
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.40 E-value=4.8e-05 Score=67.22 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++|+||+||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 208
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.40 E-value=5.1e-05 Score=68.00 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++++.+| +.+|+|||||||||++.+|.-++.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44556666 899999999999999999976664
No 209
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.37 E-value=7.4e-05 Score=65.16 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++++++.++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 55699998887 788999999999999999987
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.29 E-value=7.6e-05 Score=65.76 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++|+|++||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 211
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.28 E-value=8.3e-05 Score=63.89 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 212
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=2.2e-05 Score=75.31 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=38.9
Q ss_pred cccceeeecCcceeeccccceeccCCCCCceE--EEEEccCCCCcchhhhhhhhhhc
Q 018083 88 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 88 i~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~--vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-++++..|+.. .+ ++.++..|..|++ +.|.||+|+||||+++++++.+.
T Consensus 21 p~~~~~~~g~~---~~---~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 21 PETLDEVYGQN---EV---ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CSSGGGCCSCH---HH---HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCcHHHhcCcH---HH---HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34555556542 45 4448888999988 99999999999999999999986
No 213
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00012 Score=62.79 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999884
No 214
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.20 E-value=0.00011 Score=69.65 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++.+++|+|++|||||||+|.|.|..
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3455689999999999999999999864
No 215
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.19 E-value=3.5e-05 Score=75.21 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=34.2
Q ss_pred cccccccceeeecCcceeeccccceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 84 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 84 ~~lei~nl~~~Y~~~~~~~~l~~L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.+.+++..|+.. .+ +++++|+| +|+|++|+|||||+++|.+...
T Consensus 16 ~~v~~~~l~~~~~~k---~~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 16 GYVGFANLPNQVHRK---SV---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp -----CCHHHHHHTH---HH---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred ceEEeccchHHhCCe---ee---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 468899999998753 34 44488876 9999999999999999987654
No 216
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.18 E-value=0.00013 Score=72.75 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcc-------cccccccceeeecccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFEN-------DKFASERAQVTYNSSV 159 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~-------~~~~p~~G~I~i~G~~ 159 (361)
-.++|+|++|||||||+|+|.|.... ....+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 48999999999999999999997530 0001456777777754
No 217
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.16 E-value=0.00013 Score=64.34 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+++|+|++|||||||++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.16 E-value=0.00015 Score=71.85 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc------ccccccccceeeeccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 158 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~------~~~~~p~~G~I~i~G~ 158 (361)
.+..+..++|+|++|+|||||+|+|.|.-. .....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 667788999999999999999999999711 0001167788887664
No 219
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.14 E-value=0.00016 Score=70.50 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.4
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 44577777886 899999999999999999974
No 220
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.14 E-value=0.00021 Score=65.77 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
...++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 567788999999999999999999998875 24566666444
No 221
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.14 E-value=0.00016 Score=62.41 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999998654
No 222
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.14 E-value=8.9e-05 Score=72.55 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=32.8
Q ss_pred ceeccCCCCCceE--EEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~--vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++.+++|++ ++|+||+||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4559999999998 99999999999999999999876
No 223
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.12 E-value=0.0002 Score=62.97 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=28.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 157 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G 157 (361)
.+++|+|++|||||||++.|.+.+.... ..-|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCC
Confidence 5799999999999999999999876111 1235555544
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.12 E-value=0.00018 Score=65.81 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=25.9
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++.+++| ++|+||+|+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33466677777 88999999999999999999875
No 225
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.06 E-value=0.00018 Score=61.05 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 226
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.05 E-value=0.0002 Score=60.61 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 227
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.02 E-value=0.00047 Score=59.74 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.1
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|||||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999876553
No 228
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.97 E-value=0.00022 Score=61.54 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998643
No 229
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.96 E-value=0.00029 Score=63.93 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceee
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 154 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~ 154 (361)
+-++|.+++|+|++||||||+.+.|++.+. ...++.|.+.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg--~~~~d~d~~~ 51 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFG--FTYLDTGAMY 51 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHC--CEEEEHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcC--CceecCCCee
Confidence 457788999999999999999999998543 1115556554
No 230
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.94 E-value=0.00017 Score=63.65 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.93 E-value=0.00017 Score=66.46 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
.-+++|+||+||||||+.+.|+..+.-. ..+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~--~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGAR--YLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCE--EEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC--cccCCcH
Confidence 3489999999999999999999655311 1455555
No 232
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.92 E-value=0.00032 Score=60.10 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998775
No 233
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.84 E-value=0.00044 Score=59.64 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.++..+.|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 445678899999999999999999986654
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.00047 Score=59.64 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999987553
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.80 E-value=0.00044 Score=74.35 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=29.3
Q ss_pred cCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 111 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 111 s~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.+++++.++|+||+|||||||+++|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45788899999999999999999999999886
No 236
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.80 E-value=0.00045 Score=60.12 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999765
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.80 E-value=0.00041 Score=58.35 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.2
Q ss_pred EEEEEccCCCCcchhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRI 137 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I 137 (361)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 238
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.80 E-value=0.00041 Score=67.35 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=31.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444666799999999999999999999998887665
No 239
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00048 Score=59.28 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.3
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988664
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.75 E-value=0.00056 Score=68.58 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=35.3
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 160 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~i 160 (361)
++.+++++||+||||||++..|++.+. +..+.|.+-+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCc
Confidence 578999999999999999999999998 7778888766554
No 241
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.73 E-value=0.00055 Score=63.21 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+||+|||||||.+.|++-+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998764
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.72 E-value=0.00049 Score=59.14 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 243
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.70 E-value=0.00054 Score=61.95 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|++|+|||||++.|.|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3689999999999999999998765
No 244
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.68 E-value=0.0012 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 245
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.67 E-value=0.00097 Score=62.82 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.++.|.||+|||||||.+.|..-++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999987553
No 246
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.67 E-value=0.00071 Score=63.81 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=27.1
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.++++..+.|.||+|||||||+++|++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4556777899999999999999999999775
No 247
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.66 E-value=0.00071 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.+-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 248
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.66 E-value=0.00072 Score=58.93 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999875
No 249
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.65 E-value=0.00065 Score=58.59 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|+||+||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999987664
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.62 E-value=0.00059 Score=66.35 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeec
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 156 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~ 156 (361)
-+++|+++.|.||+|||||||+..++.... ...|.+.|-
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~-----~~g~~vlyi 95 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGIAAFI 95 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEE
Confidence 678999999999999999999888876665 444555443
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.61 E-value=0.00077 Score=58.86 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998876
No 252
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.60 E-value=0.00069 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCcchhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.60 E-value=0.00084 Score=58.72 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998876
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.0007 Score=60.17 Aligned_cols=24 Identities=29% Similarity=0.743 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|+||||||||||++.|..-++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999877654
No 255
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.58 E-value=0.00082 Score=58.20 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567999999999999999999987664
No 256
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.57 E-value=0.00087 Score=65.46 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=31.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhcccccccccceeeeccc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 158 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~ 158 (361)
.+..++|+||+|||||||++.|...+. +..+.|.+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 566899999999999999999998887 66777777543
No 257
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.52 E-value=0.00091 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987654
No 258
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.50 E-value=0.0013 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 368999999999999999997654
No 259
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.50 E-value=0.00093 Score=58.43 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998664
No 260
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.49 E-value=0.00086 Score=67.97 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=29.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 44488889988 88999999999999999999764
No 261
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.49 E-value=0.00093 Score=58.71 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|-+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988664
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.48 E-value=0.00096 Score=57.37 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
No 263
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0019 Score=57.03 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.+.+-.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999887643
No 264
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.47 E-value=0.002 Score=56.14 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998744
No 265
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.46 E-value=0.0011 Score=58.32 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999997664
No 266
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0011 Score=57.07 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987553
No 267
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.45 E-value=0.0009 Score=61.97 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
No 268
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.42 E-value=0.0013 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=23.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999999886
No 269
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.41 E-value=0.0015 Score=60.89 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=27.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhccccccccccee
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 153 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I 153 (361)
...+.|+||+|+|||||+++|++.+. +..+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 35899999999999999999999987 555544
No 270
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.41 E-value=0.00041 Score=60.30 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=25.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+-+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344567899999999999999999987664
No 271
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.39 E-value=0.0012 Score=57.22 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|+.||||||+++.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998874
No 272
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0012 Score=56.81 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 273
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.34 E-value=0.0024 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 274
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.33 E-value=0.0013 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 275
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.32 E-value=0.0016 Score=63.78 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=29.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc------ccccccccceeeeccc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNSS 158 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~------~~~~~p~~G~I~i~G~ 158 (361)
-.++|||.+|+|||||+|+|.+-.. .....|..|.+.+.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 4689999999999999999998321 0011256677777653
No 276
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.30 E-value=0.0014 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 277
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.29 E-value=0.0015 Score=61.63 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999988664
No 278
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.29 E-value=0.0014 Score=54.12 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 279
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.29 E-value=0.002 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987654
No 280
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.29 E-value=0.0021 Score=53.37 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 281
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.27 E-value=0.0015 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999987643
No 282
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.26 E-value=0.0032 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 283
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.25 E-value=0.0013 Score=54.83 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 489999999999999999987543
No 284
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.23 E-value=0.0016 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
No 285
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0016 Score=54.27 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 286
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0015 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.21 E-value=0.0017 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998755
No 288
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.21 E-value=0.0016 Score=54.17 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 289
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.21 E-value=0.0016 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 290
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.20 E-value=0.0017 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999988744
No 291
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.20 E-value=0.0017 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
No 292
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.19 E-value=0.0016 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
--.++|+|+.|||||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 293
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.19 E-value=0.0016 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998754
No 294
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.19 E-value=0.0016 Score=55.29 Aligned_cols=24 Identities=13% Similarity=0.594 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|++||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987664
No 295
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.17 E-value=0.0021 Score=54.16 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++.-.++|+|+.|||||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345579999999999999999997643
No 296
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.17 E-value=0.0019 Score=57.58 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988664
No 297
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.17 E-value=0.0035 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 334578999999999999999987643
No 298
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.17 E-value=0.0018 Score=57.85 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-++.|+||+||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999987664
No 299
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.16 E-value=0.0032 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 300
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.16 E-value=0.0019 Score=55.59 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988774
No 301
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.16 E-value=0.0018 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
No 302
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.16 E-value=0.0017 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 478999999999999999976443
No 303
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.15 E-value=0.0016 Score=54.77 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997643
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.15 E-value=0.0019 Score=54.41 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998644
No 305
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.14 E-value=0.0034 Score=55.39 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.13 E-value=0.0022 Score=56.27 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987664
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.13 E-value=0.0026 Score=55.71 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+..+++|.|+.||||||+.+.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456899999999999999999986553
No 308
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.13 E-value=0.0018 Score=59.32 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.-.++|+|++|+|||||+|.|.|--.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34689999999999999999988553
No 309
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.12 E-value=0.0019 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998864
No 310
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.09 E-value=0.0021 Score=53.40 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 311
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.08 E-value=0.0019 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988743
No 312
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.08 E-value=0.002 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+++|+|+.||||||+.+.|+.-+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999986553
No 313
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.08 E-value=0.0022 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 314
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.08 E-value=0.0018 Score=55.74 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 315
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.08 E-value=0.0017 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.-.++|+|++|+|||||++.+.+-.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 316
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.07 E-value=0.0021 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+||.||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
No 317
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.06 E-value=0.0027 Score=56.16 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998876
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.06 E-value=0.0023 Score=54.42 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987654
No 319
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.06 E-value=0.0022 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998644
No 320
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.06 E-value=0.0022 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 321
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.05 E-value=0.0024 Score=55.28 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=4.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998875
No 322
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.04 E-value=0.002 Score=60.32 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|||||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.03 E-value=0.0023 Score=58.58 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
--+++|.|++||||||+.+.|...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999988654
No 324
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.03 E-value=0.0048 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 368999999999999999887643
No 325
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.01 E-value=0.0022 Score=54.43 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCCcchhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999874
No 326
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.01 E-value=0.0023 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|||||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 327
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.00 E-value=0.0024 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998744
No 328
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.00 E-value=0.0025 Score=52.97 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
No 329
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0051 Score=52.91 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 330
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.98 E-value=0.0032 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-.++|+|+.|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999965
No 331
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.97 E-value=0.0026 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998644
No 332
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.0027 Score=60.26 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999886
No 333
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.97 E-value=0.0033 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999997643
No 334
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.96 E-value=0.0026 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 335
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.94 E-value=0.0027 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998643
No 336
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.93 E-value=0.0027 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999997644
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.92 E-value=0.0022 Score=59.46 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 338
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.92 E-value=0.0027 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 339
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.92 E-value=0.0038 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 340
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.91 E-value=0.0031 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998876
No 341
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.90 E-value=0.0029 Score=53.43 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 342
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.90 E-value=0.003 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999998776
No 343
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.88 E-value=0.0019 Score=69.41 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=30.1
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.+.++..++|+||+|||||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999999986
No 344
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.87 E-value=0.0029 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.+.+-.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999997644
No 345
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.87 E-value=0.0029 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.|.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998755
No 346
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.84 E-value=0.0045 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998643
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.84 E-value=0.003 Score=56.11 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
..+++|+|+.||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 348
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.83 E-value=0.0036 Score=57.15 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++-+++|+||+||||||+.+.|+.-+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556899999999999999999986553
No 349
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.82 E-value=0.0045 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999984
No 350
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.82 E-value=0.0096 Score=51.98 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34456899999999999999998764
No 351
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.81 E-value=0.003 Score=57.63 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|||||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
No 352
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.81 E-value=0.0033 Score=53.93 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998744
No 353
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.79 E-value=0.0049 Score=58.85 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=23.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999999887
No 354
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.79 E-value=0.003 Score=58.36 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998864
No 355
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.006 Score=54.11 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998744
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.79 E-value=0.0035 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998754
No 357
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0033 Score=54.05 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999874
No 358
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.77 E-value=0.0034 Score=53.85 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 359
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.77 E-value=0.0033 Score=53.64 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++.-.++|+|+.|||||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999998644
No 360
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.76 E-value=0.0033 Score=60.41 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=27.6
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
++...+++ .|.-++|+|+||+|||||+..|.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34477887 688999999999999999999877
No 361
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0034 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 362
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.76 E-value=0.0038 Score=60.19 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-|++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999999998875
No 363
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.76 E-value=0.0041 Score=52.45 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3446789999999999999999998775
No 364
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.74 E-value=0.0037 Score=58.00 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+|||||+++|++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998765
No 365
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.74 E-value=0.0019 Score=58.40 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.+.+|+.++|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345789999999999999998887653
No 366
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.73 E-value=0.0052 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 367
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.73 E-value=0.0034 Score=59.53 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||+|.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 368
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.72 E-value=0.0038 Score=56.06 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 369
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.0033 Score=60.71 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
..-.++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998865
No 370
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.70 E-value=0.0058 Score=53.11 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.-.++|+|+.|+|||||++.+.+-..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 3445789999999999999999987543
No 371
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.70 E-value=0.0038 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|||||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998764
No 372
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.68 E-value=0.0032 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
No 373
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0039 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998755
No 374
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.67 E-value=0.0037 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
++| +++|+|+.|||||||+|.|.|--
T Consensus 9 ~~g-~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVG-YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCC
Confidence 344 89999999999999999998843
No 375
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.65 E-value=0.0054 Score=61.31 Aligned_cols=43 Identities=16% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCCCc--eEEEEEccCCCCcchhhhhhhhhhcccccccccceeeecccc
Q 018083 112 YDVPKT--TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 159 (361)
Q Consensus 112 ~~I~~G--e~vaLvGpnGSGKSTLl~~I~gl~~~~~~~p~~G~I~i~G~~ 159 (361)
|.+.++ .+++|+|++||||||++..|++.+. .....|.+-..|
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 555534 5899999999999999999999887 444456554433
No 376
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.63 E-value=0.0045 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 377
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.63 E-value=0.0045 Score=57.97 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.62 E-value=0.0041 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|+.|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987653
No 379
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.62 E-value=0.0041 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987744
No 380
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.62 E-value=0.0039 Score=53.22 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 381
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0043 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 382
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.62 E-value=0.0037 Score=53.08 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=9.8
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998754
No 383
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.62 E-value=0.0019 Score=56.97 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998854
No 384
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.62 E-value=0.0041 Score=57.28 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++..+.|.||+|+|||||+++|+..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3444589999999999999999988775
No 385
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.62 E-value=0.0046 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998543
No 386
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.62 E-value=0.0046 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.61 E-value=0.0043 Score=54.01 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.3
Q ss_pred EEEEEccCCCCcchhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 388
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.61 E-value=0.004 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999998774
No 389
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.61 E-value=0.0037 Score=61.20 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|||||||+++|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.60 E-value=0.0043 Score=55.05 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987553
No 391
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.59 E-value=0.0039 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.-.++|+|+.|+|||||++.+.+-..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQS 42 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999887443
No 392
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.59 E-value=0.004 Score=57.95 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..|||||||+|.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.58 E-value=0.0043 Score=55.31 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|-+++|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987664
No 394
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.58 E-value=0.004 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999863
No 395
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0042 Score=53.18 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.-.++|+|+.|||||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999999853
No 396
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.58 E-value=0.0036 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998644
No 397
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.56 E-value=0.0046 Score=53.17 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34468999999999999999998643
No 398
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.55 E-value=0.0044 Score=57.30 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|||||||++.|.|...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 589999999999999999988543
No 399
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.55 E-value=0.0046 Score=53.79 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3478999999999999999998643
No 400
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.54 E-value=0.0047 Score=53.64 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 334578999999999999999998644
No 401
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.54 E-value=0.0047 Score=58.27 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+|||||+++|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45689999999999999999999886
No 402
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.54 E-value=0.0022 Score=58.61 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=25.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+..+.| +.|.||+|+|||||+++|+....
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 55566666 77999999999999999998765
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0048 Score=53.37 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 404
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0045 Score=54.22 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=24.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.|.-..--.++|+|+.|||||||++.+.+-.
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 18 LYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp -CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 55544444579999999999999999998743
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.50 E-value=0.005 Score=59.77 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998775
No 406
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.48 E-value=0.0045 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=19.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999987543
No 407
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.48 E-value=0.0043 Score=62.76 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+-+|+.++|+||+|+|||||++.|+.-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5777899999999999999999999988776
No 408
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.47 E-value=0.0042 Score=53.96 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
=.++|+|+.|||||||++.+.+-
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998763
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.46 E-value=0.0051 Score=57.26 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 410
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.46 E-value=0.0078 Score=53.12 Aligned_cols=25 Identities=40% Similarity=0.790 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhh-hhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNR-ISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~-I~gl~~ 142 (361)
-.++|+|+.|||||||++. +.+-+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3589999999999999999 555543
No 411
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.46 E-value=0.0054 Score=58.48 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-+++|+++.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 68999999999999999999999888753
No 412
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.45 E-value=0.0048 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999988653
No 413
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.41 E-value=0.0067 Score=54.74 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=24.9
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.-+++ .|..++|+||+|||||||...|+.-.
T Consensus 28 ~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 28 VLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 55555 36789999999999999999887644
No 414
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.41 E-value=0.0055 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998644
No 415
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.40 E-value=0.0053 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..|+|||||++.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 416
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.39 E-value=0.0052 Score=56.75 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++++|++|+|||||+|.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998744
No 417
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.37 E-value=0.0053 Score=56.48 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|++|+|||||++.|.|-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998844
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.37 E-value=0.0065 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+..+.|+|+.||||||+.+.|+.-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999987664
No 419
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.36 E-value=0.006 Score=55.71 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 114 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 114 I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+|-+++|.|+.||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998876
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.36 E-value=0.0054 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
No 421
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.33 E-value=0.0082 Score=54.45 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=27.4
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-.+++..++.|+||.||||+|..+.|+.-+.
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 445677888999999999999999999987775
No 422
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.32 E-value=0.0055 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
....+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
No 423
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.31 E-value=0.006 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.31 E-value=0.007 Score=58.68 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++.++.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3556899999999999999999998775
No 425
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.29 E-value=0.0057 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999763
No 426
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.27 E-value=0.0069 Score=54.59 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|-+++|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988876
No 427
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.25 E-value=0.0086 Score=59.24 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 112 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 112 ~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.=++..++.|+|++||||||+.+.|+.-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999987644
No 428
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.25 E-value=0.0071 Score=55.51 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.8
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998775
No 429
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.24 E-value=0.0064 Score=56.54 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.6
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998654
No 430
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.22 E-value=0.0054 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
++.-.++|+|+.|+|||||++.+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3445799999999999999999854
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.20 E-value=0.0069 Score=55.66 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=25.2
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|.+++|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999998886
No 432
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.19 E-value=0.0081 Score=54.27 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.-+.|.||+|+|||||+++|+..+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999998764
No 433
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.18 E-value=0.0066 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.++|+|+.|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999998887554
No 434
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.17 E-value=0.008 Score=57.83 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999987665
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.17 E-value=0.0076 Score=57.86 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999988775
No 436
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.16 E-value=0.0071 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.++|+|+.|||||||++.+..-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999987653
No 437
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.15 E-value=0.0078 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||.|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988775
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.13 E-value=0.0076 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998765
No 439
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.13 E-value=0.0077 Score=52.21 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.3
Q ss_pred CCceEEEEEccCCCCcchhhhhhhh
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.+.-.++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999864
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.10 E-value=0.011 Score=51.78 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999888753
No 441
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.10 E-value=0.013 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.6
Q ss_pred EEEEEccCCCCcchhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~g 139 (361)
.++|+|.+|+|||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 589999999999999998753
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.04 E-value=0.0092 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.7
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|-+++|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998775
No 443
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.02 E-value=0.0083 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCcchhhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
-.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC
Confidence 468999999999999999987643
No 444
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.01 E-value=0.0085 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|-+++|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998886
No 445
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.00 E-value=0.0067 Score=60.57 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|+|||||+|.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998843
No 446
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.98 E-value=0.01 Score=53.83 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|.++.|-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999999887
No 447
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.94 E-value=0.01 Score=54.05 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|-+++|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999999998886
No 448
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.009 Score=53.45 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|++|+|||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998864
No 449
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.82 E-value=0.01 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhh
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 450
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.73 E-value=0.011 Score=55.67 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=26.1
Q ss_pred ccCCCCCc--eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~G--e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.-.+..| ..+.|.||+|+|||||+++|++.+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44344444 3489999999999999999999875
No 451
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.62 E-value=0.016 Score=48.36 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.-+.|.||+|+|||+|+++|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3445689999999999999999988664
No 452
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.62 E-value=0.0099 Score=56.28 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=25.3
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
-+++|+++.|.||+|||||||+..++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999888753
No 453
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.58 E-value=0.014 Score=51.62 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhh
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-+++ .|.-++|.|+||+|||||...+..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444 367899999999999999887754
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.57 E-value=0.013 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998775
No 455
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.56 E-value=0.014 Score=54.78 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+-.++|+|.+|+|||||+|.|.|-..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 445799999999999999999988653
No 456
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.58 E-value=0.0063 Score=52.95 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCCcchhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISK 139 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~g 139 (361)
.-.++|+|+.|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34689999999999999988864
No 457
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.54 E-value=0.014 Score=54.15 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+++..+.|.||.|+|||||+++|+..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445699999999999999999998875
No 458
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.49 E-value=0.011 Score=56.25 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.7
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhh
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
|+.+.--+++|+++.|.|++|+|||||+..++.-.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44477679999999999999999999998887544
No 459
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.47 E-value=0.013 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999875
No 460
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.42 E-value=0.013 Score=57.02 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.4
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-+++|.++.|.||+|||||||+..++.-..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999988876554
No 461
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.36 E-value=0.015 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999988764
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.35 E-value=0.015 Score=57.78 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999988775
No 463
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.34 E-value=0.014 Score=56.28 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..|||||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
No 464
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.34 E-value=0.021 Score=57.26 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
No 465
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.28 E-value=0.017 Score=54.49 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKV 140 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl 140 (361)
.+-.++|+|+.|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999997764
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.23 E-value=0.018 Score=52.16 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.7
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+++.-.+.|.||.|+||||++.+|+..+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 477766799999999999999999999876
No 467
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.19 E-value=0.014 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=22.9
Q ss_pred CCCCceEEEEEccCCCCcchhhhhhh
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLVNRIS 138 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl~~I~ 138 (361)
=+++|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999999986543
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.15 E-value=0.018 Score=54.66 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999998875
No 469
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.15 E-value=0.025 Score=54.60 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.-+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998775
No 470
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.14 E-value=0.022 Score=52.24 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
...+.|.||+|+|||||+++|+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34688999999999999999988654
No 471
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.13 E-value=0.018 Score=55.35 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..+.|.||+|+||||++++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999998774
No 472
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.07 E-value=0.015 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|++|+|||||+|.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 473
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.04 E-value=0.029 Score=53.40 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=24.9
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+|..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999999886
No 474
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.02 E-value=0.017 Score=56.24 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++..++++|.+|+|||||+|.|.+...
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~ 187 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEAT 187 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhcc
Confidence 345799999999999999999999743
No 475
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.02 E-value=0.025 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCCcchhh-hhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLV-NRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl-~~I~gl~ 141 (361)
+|.++.+.||.||||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 5544443
No 476
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.018 Score=57.54 Aligned_cols=31 Identities=35% Similarity=0.656 Sum_probs=25.8
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+....++| +.|.||.|||||+|+++|++-..
T Consensus 201 ~g~~~prG--iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 201 IGIDPPRG--VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp HCCCCCCE--EEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34455666 88999999999999999999776
No 477
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.99 E-value=0.024 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.5
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||.|+|||+|+++|+.-+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999998775
No 478
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.98 E-value=0.02 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||.|+|||||+++|+..+.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999998875
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.95 E-value=0.023 Score=54.05 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+..-+.|.||.|+|||||+++|+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC
Confidence 334588999999999999999998773
No 480
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.018 Score=57.61 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=25.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..++| +.|.||.|||||+|+++|++-..
T Consensus 210 ~g~~~prG--vLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 210 VGIKPPKG--VLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp HCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCe--EEEECCCCCcHHHHHHHHHHHhC
Confidence 33445566 88999999999999999999876
No 481
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.91 E-value=0.018 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
++..++++|.+|+|||||+|.|.+-..
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~ 185 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFS 185 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhc
Confidence 456899999999999999999998753
No 482
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.91 E-value=0.019 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+.-+.|.||.|+|||+++++|....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 3458899999999999999987644
No 483
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.02 Score=57.31 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=25.7
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+..++| +.|.||.|||||+|+++|++-..
T Consensus 210 ~g~~~prG--vLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 210 MGIRAPKG--ALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HCCCCCCE--EEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCe--eEEECcCCCCHHHHHHHHHHHhC
Confidence 34445555 88999999999999999999876
No 484
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.74 E-value=0.027 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.5
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999998775
No 485
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.69 E-value=0.021 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhh
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.++|+|..++|||||+|+|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998754
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.61 E-value=0.027 Score=51.59 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
-.+||+||.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987664
No 487
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.58 E-value=0.026 Score=56.82 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
.|-.++|+|+.|+|||||+|.|.+-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45569999999999999999999864
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.023 Score=56.27 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=26.2
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.-++| +.|.||.|||||+|+++|++-..
T Consensus 177 ~gi~~prG--vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 177 LGIAQPKG--VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp HTCCCCCC--EEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCCc--eEEeCCCCCCHHHHHHHHHHhhC
Confidence 44455666 88999999999999999999876
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.54 E-value=0.031 Score=52.87 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..-+.|.||.|+|||+|+++|+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34589999999999999999998765
No 490
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.51 E-value=0.03 Score=57.85 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|-++.|.|++||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998775
No 491
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.49 E-value=0.025 Score=58.07 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCCcchhhhhhhhhh
Q 018083 117 TTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 117 Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
--.++|+|..|+|||||+|.|.|--
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3489999999999999999999854
No 492
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.44 E-value=0.026 Score=57.54 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.6
Q ss_pred CCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 115 PKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 115 ~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.|-.+.|+|.+||||||+.++|+.-+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999886
No 493
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.38 E-value=0.026 Score=58.61 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhh
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVF 141 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~ 141 (361)
+--.++|+|+.|+|||||+|.|.|-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 44678999999999999999999864
No 494
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.37 E-value=0.032 Score=55.45 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.1
Q ss_pred ceeccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 107 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 107 L~~is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 333555699999999999999999999998887664
No 495
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.34 E-value=0.04 Score=53.15 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCCceEEEEEccCCCCcchhh-hhhhhhhc
Q 018083 113 DVPKTTSLLLIGPKGSGKSSLV-NRISKVFE 142 (361)
Q Consensus 113 ~I~~Ge~vaLvGpnGSGKSTLl-~~I~gl~~ 142 (361)
=+++| ++.|.||+|||||||+ .++....+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999 8999999999999994 44444444
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.28 E-value=0.033 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+...+.|.||+|+|||||+++|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999988764
No 497
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.026 Score=56.96 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=26.3
Q ss_pred ccCCCCCceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 110 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 110 is~~I~~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+.+..++| +.|.||.|||||+|+++|++-..
T Consensus 238 ~Gi~pprG--ILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 238 LGIDPPKG--ILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp HTCCCCSE--EEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCc--eEeeCCCCCcHHHHHHHHHhccC
Confidence 44556666 88999999999999999999776
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.20 E-value=0.032 Score=53.73 Aligned_cols=25 Identities=40% Similarity=0.836 Sum_probs=22.5
Q ss_pred eEEEEEccCCCCcchhhhhhhhhhc
Q 018083 118 TSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 118 e~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
..+.|.||+|+|||||+++|+..+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998774
No 499
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.20 E-value=0.032 Score=52.61 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.6
Q ss_pred EEEEEccCCCCcchhhhhhhhhhc
Q 018083 119 SLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 119 ~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988765
No 500
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.18 E-value=0.035 Score=58.04 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCCcchhhhhhhhhhc
Q 018083 116 KTTSLLLIGPKGSGKSSLVNRISKVFE 142 (361)
Q Consensus 116 ~Ge~vaLvGpnGSGKSTLl~~I~gl~~ 142 (361)
+|.++.|+|.+||||||+.+.|...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998773
Done!