BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018084
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1G9A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 3)
pdb|1G9B|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 1)
pdb|1G9C|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 4)
pdb|1G9D|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With An Inhibitor (Experiment 2)
pdb|1S0B|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 4.0
pdb|1S0C|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.0
pdb|1S0D|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 5.5
pdb|1S0E|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 6.0
pdb|1S0F|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B At Ph 7.0
pdb|1S0G|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type B Apo Form
pdb|2NP0|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Type B
Complexed With Synaptotagamin-Ii Ectodomain
Length = 1290
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 2 EANGNSMNKEVFHDRDIFLEDYKQMNRSFRVYVY-------------PHRRNDPFANVLL 48
++N S+N ++ D D+ +N+ +RVY Y P +D F N +
Sbjct: 1149 KSNSQSINDDIVRKEDYIYLDFFNLNQEWRVYTYKYFKKEEEKLFLAPISDSDEFYNTIQ 1208
Query: 49 PVDFEPRGNYASESYFKK 66
+++ + Y+ + FKK
Sbjct: 1209 IKEYDEQPTYSCQLLFKK 1226
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 213 QVWRNDSEIYAHSGRLKTPYADGLLGSKFCLH----VKGFEVNTARI 255
Q+ R++ E+ +G +T Y D L K CL +K VNT R+
Sbjct: 60 QLQRSEEELSNANGAFETSYIDALADPKICLRDIPFLKMLGVNTLRV 106
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 213 QVWRNDSEIYAHSGRLKTPYADGLLGSKFCLH----VKGFEVNTARI 255
Q+ R++ E+ +G +T Y D L K CL +K VNT R+
Sbjct: 60 QLQRSEEELSNANGAFETSYIDALADPKICLRDIPFLKMLGVNTLRV 106
>pdb|2NM1|A Chain A, Structure Of BontB IN COMPLEX WITH ITS PROTEIN RECEPTOR
Length = 436
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 2 EANGNSMNKEVFHDRDIFLEDYKQMNRSFRVYVY-------------PHRRNDPFANVLL 48
++N S+N ++ D D+ +N+ +RVY Y P +D F N +
Sbjct: 293 KSNSQSINDDIVRKEDYIYLDFFNLNQEWRVYTYKYFKKEEEKLFLAPISDSDEFYNTIQ 352
Query: 49 PVDFEPRGNYASESYFKK 66
+++ + Y+ + FKK
Sbjct: 353 IKEYDEQPTYSCQLLFKK 370
>pdb|1Z0H|A Chain A, N-Terminal Helix Reorients In Recombinant C-Fragment Of
Clostridium Botulinum Type B
pdb|1Z0H|B Chain B, N-Terminal Helix Reorients In Recombinant C-Fragment Of
Clostridium Botulinum Type B
Length = 438
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 2 EANGNSMNKEVFHDRDIFLEDYKQMNRSFRVYVY-------------PHRRNDPFANVLL 48
++N S+N ++ D D+ +N+ +RVY Y P +D F N +
Sbjct: 297 KSNSQSINDDIVRKEDYIYLDFFNLNQEWRVYTYKYFKKEEEKLFLAPISDSDEFYNTIQ 356
Query: 49 PVDFEPRGNYASESYFKK 66
+++ + Y+ + FKK
Sbjct: 357 IKEYDEQPTYSCQLLFKK 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,518,505
Number of Sequences: 62578
Number of extensions: 479951
Number of successful extensions: 924
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 8
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)