Query 018084
Match_columns 361
No_of_seqs 184 out of 823
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 7E-59 1.5E-63 468.2 24.7 337 12-352 97-461 (464)
2 PF03016 Exostosin: Exostosin 100.0 2.1E-58 4.5E-63 440.3 20.9 276 27-304 2-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 100.0 4.3E-34 9.3E-39 279.4 15.2 298 22-352 186-531 (907)
4 KOG1022 Acetylglucosaminyltran 99.9 1.2E-24 2.7E-29 212.6 16.1 307 14-347 79-408 (691)
5 PF00852 Glyco_transf_10: Glyc 97.4 0.00043 9.2E-09 68.1 7.7 141 164-311 139-304 (349)
6 cd03801 GT1_YqgM_like This fam 97.4 0.0018 3.8E-08 60.8 11.2 94 230-326 267-363 (374)
7 cd03820 GT1_amsD_like This fam 97.2 0.0033 7.2E-08 58.8 11.3 96 230-327 244-341 (348)
8 PLN02871 UDP-sulfoquinovose:DA 97.2 0.0027 5.8E-08 64.5 11.0 105 225-332 317-427 (465)
9 cd03814 GT1_like_2 This family 97.2 0.0027 5.9E-08 60.3 10.1 93 231-326 259-353 (364)
10 cd03822 GT1_ecORF704_like This 97.1 0.0031 6.8E-08 60.1 10.4 93 231-327 260-356 (366)
11 PF00534 Glycos_transf_1: Glyc 97.1 0.0016 3.5E-08 56.2 7.4 85 230-317 84-170 (172)
12 cd03821 GT1_Bme6_like This fam 97.0 0.0057 1.2E-07 57.9 10.4 92 231-327 274-368 (375)
13 cd03818 GT1_ExpC_like This fam 97.0 0.0071 1.5E-07 59.8 11.4 117 207-326 266-388 (396)
14 cd05844 GT1_like_7 Glycosyltra 97.0 0.011 2.4E-07 57.0 12.4 103 222-327 247-359 (367)
15 cd03819 GT1_WavL_like This fam 96.8 0.016 3.4E-07 55.5 11.7 95 229-326 254-353 (355)
16 cd03794 GT1_wbuB_like This fam 96.7 0.012 2.5E-07 56.0 10.5 95 230-327 286-388 (394)
17 cd03809 GT1_mtfB_like This fam 96.7 0.0085 1.8E-07 57.0 9.6 92 231-327 265-358 (365)
18 TIGR03449 mycothiol_MshA UDP-N 96.7 0.017 3.6E-07 57.1 11.8 104 222-328 285-391 (405)
19 cd03808 GT1_cap1E_like This fa 96.7 0.015 3.2E-07 54.6 10.8 93 231-326 256-351 (359)
20 TIGR03088 stp2 sugar transfera 96.7 0.014 3.1E-07 56.9 10.7 95 230-327 264-361 (374)
21 PRK15427 colanic acid biosynth 96.5 0.031 6.6E-07 56.0 11.6 99 225-326 284-393 (406)
22 cd04962 GT1_like_5 This family 96.4 0.039 8.5E-07 53.2 11.6 93 231-326 263-358 (371)
23 cd03799 GT1_amsK_like This is 96.4 0.033 7.2E-07 53.1 11.0 95 230-327 247-350 (355)
24 cd03823 GT1_ExpE7_like This fa 96.3 0.029 6.3E-07 53.0 10.2 87 230-319 254-343 (359)
25 cd03817 GT1_UGDG_like This fam 96.3 0.059 1.3E-06 51.0 12.1 89 231-323 271-361 (374)
26 PRK10307 putative glycosyl tra 96.1 0.03 6.5E-07 55.6 9.6 103 222-327 286-396 (412)
27 TIGR02149 glgA_Coryne glycogen 96.0 0.052 1.1E-06 53.0 10.7 95 230-327 272-375 (388)
28 cd03800 GT1_Sucrose_synthase T 96.0 0.021 4.6E-07 55.5 7.9 94 231-327 295-391 (398)
29 cd03798 GT1_wlbH_like This fam 96.0 0.03 6.5E-07 52.7 8.5 93 231-326 271-364 (377)
30 cd03811 GT1_WabH_like This fam 96.0 0.095 2.1E-06 48.8 11.9 89 231-322 256-350 (353)
31 cd03807 GT1_WbnK_like This fam 96.0 0.055 1.2E-06 50.9 10.3 92 231-327 261-355 (365)
32 PRK15484 lipopolysaccharide 1, 95.9 0.067 1.5E-06 52.9 10.8 94 231-327 269-366 (380)
33 TIGR02095 glgA glycogen/starch 95.9 0.067 1.4E-06 54.4 11.0 92 231-327 358-461 (473)
34 cd04951 GT1_WbdM_like This fam 95.8 0.074 1.6E-06 50.7 10.5 91 231-326 255-348 (360)
35 cd03804 GT1_wbaZ_like This fam 95.8 0.033 7.2E-07 53.8 8.1 79 222-304 244-323 (351)
36 cd03805 GT1_ALG2_like This fam 95.8 0.1 2.3E-06 50.9 11.7 104 220-327 280-387 (392)
37 cd03806 GT1_ALG11_like This fa 95.8 0.1 2.2E-06 52.5 11.5 130 194-327 273-415 (419)
38 cd03795 GT1_like_4 This family 95.7 0.1 2.2E-06 49.7 11.1 100 224-326 248-354 (357)
39 cd04949 GT1_gtfA_like This fam 95.7 0.083 1.8E-06 51.3 10.4 93 231-326 271-366 (372)
40 PRK14098 glycogen synthase; Pr 95.7 0.078 1.7E-06 54.5 10.5 94 231-329 374-476 (489)
41 PRK09814 beta-1,6-galactofuran 95.6 0.033 7.2E-07 54.1 7.0 87 231-323 219-316 (333)
42 PRK14099 glycogen synthase; Pr 95.4 0.17 3.6E-06 52.0 11.9 94 231-329 361-469 (485)
43 PRK00654 glgA glycogen synthas 95.4 0.16 3.4E-06 51.8 11.3 91 232-327 350-451 (466)
44 cd04955 GT1_like_6 This family 95.1 0.2 4.4E-06 47.9 10.8 100 222-327 250-353 (363)
45 cd03825 GT1_wcfI_like This fam 95.1 0.044 9.6E-07 52.4 6.1 92 231-325 257-351 (365)
46 cd03816 GT1_ALG1_like This fam 95.0 0.18 4E-06 50.4 10.4 119 194-320 269-399 (415)
47 PF13524 Glyco_trans_1_2: Glyc 94.8 0.064 1.4E-06 41.6 5.3 81 242-326 2-84 (92)
48 cd03802 GT1_AviGT4_like This f 94.7 0.29 6.2E-06 46.3 10.5 78 222-304 226-305 (335)
49 cd03813 GT1_like_3 This family 94.6 0.24 5.3E-06 50.5 10.3 93 231-326 363-464 (475)
50 cd03792 GT1_Trehalose_phosphor 94.5 0.36 7.8E-06 47.1 11.0 93 230-327 265-360 (372)
51 cd03791 GT1_Glycogen_synthase_ 94.5 0.26 5.7E-06 49.9 10.4 92 231-327 363-465 (476)
52 cd03796 GT1_PIG-A_like This fa 94.5 0.2 4.3E-06 49.6 9.2 101 225-330 255-359 (398)
53 PLN02949 transferase, transfer 94.3 0.82 1.8E-05 46.7 13.2 104 221-327 336-445 (463)
54 cd04946 GT1_AmsK_like This fam 94.1 0.52 1.1E-05 47.0 11.4 93 231-326 301-399 (407)
55 cd03812 GT1_CapH_like This fam 94.0 0.49 1.1E-05 45.2 10.6 71 230-304 258-328 (358)
56 TIGR03087 stp1 sugar transfera 93.9 0.22 4.7E-06 49.3 8.1 91 231-327 290-385 (397)
57 PRK09922 UDP-D-galactose:(gluc 93.8 0.41 8.9E-06 46.6 9.7 72 231-304 250-321 (359)
58 PF13692 Glyco_trans_1_4: Glyc 93.6 0.085 1.8E-06 43.4 3.9 76 222-303 55-131 (135)
59 TIGR02472 sucr_P_syn_N sucrose 93.6 0.2 4.3E-06 50.5 7.3 93 232-327 330-429 (439)
60 KOG2619 Fucosyltransferase [Ca 93.5 0.51 1.1E-05 46.6 9.6 143 164-311 160-325 (372)
61 TIGR02918 accessory Sec system 93.3 0.85 1.8E-05 47.1 11.3 93 231-326 385-487 (500)
62 PRK15490 Vi polysaccharide bio 92.3 1 2.2E-05 47.0 10.3 64 231-297 465-528 (578)
63 PHA01633 putative glycosyl tra 91.8 0.33 7.2E-06 47.5 5.8 40 231-271 216-255 (335)
64 PHA01630 putative group 1 glyc 91.4 0.47 1E-05 46.3 6.4 40 231-271 202-241 (331)
65 TIGR02468 sucrsPsyn_pln sucros 91.1 1 2.2E-05 50.3 9.2 86 241-329 574-661 (1050)
66 PLN02939 transferase, transfer 89.6 1.8 4E-05 47.7 9.5 93 234-330 852-958 (977)
67 cd03793 GT1_Glycogen_synthase_ 89.5 0.38 8.2E-06 50.2 4.0 100 230-330 466-578 (590)
68 cd01635 Glycosyltransferase_GT 89.4 2 4.4E-05 37.4 8.3 76 194-271 135-213 (229)
69 KOG1387 Glycosyltransferase [C 89.0 1.6 3.6E-05 42.6 7.6 88 231-323 349-443 (465)
70 PLN02605 monogalactosyldiacylg 89.0 5.7 0.00012 39.2 11.9 79 231-319 275-362 (382)
71 TIGR00236 wecB UDP-N-acetylglu 88.8 5.3 0.00011 38.9 11.5 125 197-342 233-361 (365)
72 PRK13609 diacylglycerol glucos 87.3 4.4 9.5E-05 39.7 9.9 80 231-319 266-352 (380)
73 PLN02316 synthase/transferase 87.2 4.7 0.0001 45.2 10.8 95 234-330 915-1025(1036)
74 TIGR02470 sucr_synth sucrose s 86.3 1.8 3.8E-05 47.1 6.8 88 240-330 645-739 (784)
75 TIGR01133 murG undecaprenyldip 84.5 2 4.4E-05 41.1 5.8 83 231-318 243-334 (348)
76 PRK13608 diacylglycerol glucos 84.1 4.6 9.9E-05 40.1 8.3 83 231-322 266-355 (391)
77 cd04950 GT1_like_1 Glycosyltra 84.0 1.4 3E-05 43.3 4.5 66 231-303 266-336 (373)
78 PRK15179 Vi polysaccharide bio 82.9 8.9 0.00019 41.3 10.3 92 231-327 584-682 (694)
79 PRK05749 3-deoxy-D-manno-octul 82.8 5 0.00011 40.0 8.0 87 231-321 312-404 (425)
80 PF00919 UPF0004: Uncharacteri 81.8 2 4.4E-05 34.2 3.8 33 53-86 9-42 (98)
81 PLN00142 sucrose synthase 80.6 3.9 8.4E-05 44.7 6.6 87 240-329 668-761 (815)
82 PRK10125 putative glycosyl tra 77.6 6.4 0.00014 39.4 6.8 66 231-300 299-364 (405)
83 PLN02275 transferase, transfer 74.4 13 0.00028 36.4 7.9 75 194-271 261-341 (371)
84 smart00672 CAP10 Putative lipo 72.7 30 0.00064 32.5 9.5 129 188-319 78-228 (256)
85 cd03785 GT1_MurG MurG is an N- 71.2 14 0.00031 35.2 7.2 82 231-318 245-337 (350)
86 COG0438 RfaG Glycosyltransfera 71.1 29 0.00063 31.4 9.1 46 225-271 262-308 (381)
87 cd03788 GT1_TPS Trehalose-6-Ph 71.0 5 0.00011 40.9 4.2 88 230-322 352-445 (460)
88 PRK00726 murG undecaprenyldiph 69.1 16 0.00034 35.3 7.1 83 231-319 245-338 (357)
89 TIGR02400 trehalose_OtsA alpha 59.8 25 0.00054 35.9 6.7 83 230-318 347-436 (456)
90 TIGR03590 PseG pseudaminic aci 59.0 25 0.00055 33.1 6.2 32 231-268 234-265 (279)
91 PF05686 Glyco_transf_90: Glyc 56.1 48 0.001 33.2 7.9 129 188-318 152-296 (395)
92 PLN02501 digalactosyldiacylgly 55.7 41 0.00089 36.4 7.5 37 234-271 614-650 (794)
93 PLN02846 digalactosyldiacylgly 52.7 43 0.00093 34.3 7.0 38 234-272 296-333 (462)
94 PRK00025 lpxB lipid-A-disaccha 48.6 27 0.00059 33.9 4.7 85 231-322 254-358 (380)
95 COG0707 MurG UDP-N-acetylgluco 47.7 2.9E+02 0.0062 27.3 12.2 79 231-319 245-338 (357)
96 PLN03063 alpha,alpha-trehalose 40.8 1.1E+02 0.0024 33.7 8.3 83 231-318 368-457 (797)
97 KOG3185 Translation initiation 39.8 25 0.00054 31.5 2.6 33 238-270 20-52 (245)
98 PRK14862 rimO ribosomal protei 39.7 39 0.00085 34.3 4.4 47 25-86 3-50 (440)
99 PRK14333 (dimethylallyl)adenos 37.0 44 0.00095 33.9 4.3 41 31-86 8-49 (448)
100 COG0297 GlgA Glycogen synthase 34.9 1.4E+02 0.0029 31.0 7.4 97 231-332 361-471 (487)
101 PRK14340 (dimethylallyl)adenos 33.8 55 0.0012 33.3 4.4 34 52-86 15-49 (445)
102 PRK14338 (dimethylallyl)adenos 33.3 58 0.0013 33.2 4.5 34 52-86 29-63 (459)
103 PF06258 Mito_fiss_Elm1: Mitoc 33.1 1.3E+02 0.0027 29.2 6.5 36 230-269 220-255 (311)
104 PRK14328 (dimethylallyl)adenos 31.3 62 0.0013 32.7 4.3 33 53-86 11-44 (439)
105 PRK14336 (dimethylallyl)adenos 31.0 66 0.0014 32.4 4.4 34 52-86 10-44 (418)
106 PRK14334 (dimethylallyl)adenos 29.5 73 0.0016 32.3 4.4 33 53-86 10-43 (440)
107 PRK14335 (dimethylallyl)adenos 29.0 73 0.0016 32.5 4.3 34 52-86 9-43 (455)
108 PF07038 DUF1324: Protein of u 28.5 42 0.00092 23.0 1.7 39 237-278 7-46 (59)
109 PF13528 Glyco_trans_1_3: Glyc 28.5 1.2E+02 0.0025 28.5 5.5 35 230-269 242-276 (318)
110 TIGR02094 more_P_ylases alpha- 28.4 6.8E+02 0.015 26.6 11.5 134 193-328 423-590 (601)
111 PRK14331 (dimethylallyl)adenos 28.2 79 0.0017 32.0 4.4 33 53-86 10-43 (437)
112 PRK14501 putative bifunctional 27.4 1.2E+02 0.0026 32.8 5.9 68 230-302 353-423 (726)
113 PRK14325 (dimethylallyl)adenos 26.9 83 0.0018 31.8 4.3 33 53-86 13-46 (444)
114 PRK14332 (dimethylallyl)adenos 26.7 97 0.0021 31.6 4.7 44 28-86 9-53 (449)
115 COG2247 LytB Putative cell wal 26.4 67 0.0015 31.2 3.2 41 231-273 125-165 (337)
116 cd02133 PA_C5a_like PA_C5a_lik 25.5 1.3E+02 0.0028 25.2 4.7 42 231-272 40-81 (143)
117 TIGR01574 miaB-methiolase tRNA 24.2 1E+02 0.0022 31.2 4.3 34 52-86 8-43 (438)
118 TIGR00089 RNA modification enz 23.6 1E+02 0.0023 30.9 4.3 34 52-86 8-42 (429)
119 COG0621 MiaB 2-methylthioadeni 23.6 87 0.0019 31.9 3.7 43 302-345 275-323 (437)
120 TIGR01578 MiaB-like-B MiaB-lik 23.3 1.1E+02 0.0023 30.9 4.3 34 52-86 8-42 (420)
121 PRK14329 (dimethylallyl)adenos 23.1 1.1E+02 0.0024 31.2 4.5 42 30-86 24-66 (467)
122 TIGR00661 MJ1255 conserved hyp 22.4 2E+02 0.0044 27.3 5.9 66 231-302 240-310 (321)
123 PRK14326 (dimethylallyl)adenos 22.2 1.3E+02 0.0027 31.2 4.6 46 26-86 10-56 (502)
124 COG2355 Zn-dependent dipeptida 21.7 44 0.00095 32.4 1.1 71 246-316 145-215 (313)
125 cd00538 PA PA: Protease-associ 21.4 2.2E+02 0.0049 22.5 5.2 38 235-272 43-80 (126)
126 PF15582 Imm40: Immunity prote 20.7 1.6E+02 0.0036 27.8 4.5 62 231-314 261-323 (327)
127 PRK14327 (dimethylallyl)adenos 20.4 1.5E+02 0.0033 30.7 4.8 34 52-86 75-109 (509)
128 TIGR01125 MiaB-like tRNA modif 20.3 1.3E+02 0.0028 30.3 4.2 34 52-86 8-42 (430)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=7e-59 Score=468.24 Aligned_cols=337 Identities=34% Similarity=0.599 Sum_probs=273.8
Q ss_pred cccChhhhhhcHHhhhCCCeEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHH--hcCCcccCCCCcccEEEEccc
Q 018084 12 VFHDRDIFLEDYKQMNRSFRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVF--MKSHFVTKDPSKADLFFLPFS 89 (361)
Q Consensus 12 ~~~~~~~f~~~y~~~~~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L--~~S~~~T~dP~eAdlF~vP~~ 89 (361)
.+++...|..+|..|...+|||+|..+..+.++. + .++..++|++|.+||..+ ..+++||.||++||+||||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~ 172 (464)
T KOG1021|consen 97 TSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHT---P-SWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFY 172 (464)
T ss_pred ccCcchhhhhhhhhhcccCceEEecCCCCccccC---C-CcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcce
Confidence 4678888899999999999999999985444432 2 347789999999999999 578999999999999999999
Q ss_pred ccccccCC-CC----CCCChhhHHHHHHHHHhhcCCccccCCCcceEEEecCCCCchhhhhhHHHhhceEEEeccCCCcc
Q 018084 90 IARMRHDR-RI----GTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEKAWEVKLNAIQVVCSSSYFI 164 (361)
Q Consensus 90 ~~~~~~~~-~~----~~~~~~~~l~~~v~~~~~~~PyWnR~~G~dH~~v~~~d~g~~~~~~~~~~~~nai~~~~~~~~~~ 164 (361)
.++..... .. ......+.+.+++..+++++|||||++|+||||+++|+|+............+.|...++.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls 252 (464)
T KOG1021|consen 173 ASLDYNRALLWPDERVNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLS 252 (464)
T ss_pred eeEehhhhcccCCcccchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceee
Confidence 98755311 11 12245667788888888999999999999999999999987654211111112222223323355
Q ss_pred CCcccC-CccccCccCCCC---CC----CCCCCCCCCceEEEeecc-CChhHHHHHHHHHhcCC----CceEecCCC---
Q 018084 165 SGHIAH-KDVSLPQIWPRQ---ED----PPKLGSSKRNKLAFFAGA-VNSPVREKLLQVWRNDS----EIYAHSGRL--- 228 (361)
Q Consensus 165 ~~frp~-~Dv~iP~~~p~~---~~----~~~~~~~~R~~l~~F~G~-~~~~~R~~L~~~~~~~~----~~~~~~g~~--- 228 (361)
..+.+. +||+||+..... .. ....+..+|++|++|+|+ .++.+|+.|+++|++++ ...+..|.+
T Consensus 253 ~~~~~~~~dv~iP~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~ 332 (464)
T KOG1021|consen 253 LEFFPWNKDVAIPYPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPAGGQIRSILLDLWKKDPDTEVFVNCPRGKVSCD 332 (464)
T ss_pred cccccCCCcccCCCccCcCccCccccccccCCCCCCCceEEEEeccccCCcHHHHHHHHhhcCcCccccccCCCCccccC
Confidence 677788 999999874332 11 224456799999999999 99999999999999822 122233422
Q ss_pred -cchHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhH-HHHHhCCCH
Q 018084 229 -KTPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLL-KKILKGISS 306 (361)
Q Consensus 229 -~~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l-~~~L~~i~~ 306 (361)
+..|.+.|++|+|||||+|++++|.|+||||.+|||||||+|++.+||++++||++|||+|++++++++ .++|.+|+.
T Consensus 333 ~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~ 412 (464)
T KOG1021|consen 333 RPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPE 412 (464)
T ss_pred CcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCH
Confidence 359999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHh-hhccceecc--CCCCccHHHHHHHHHHHHHhccccc
Q 018084 307 EEYLLLQNNVLK-VRKHFQWHV--FPSDYDAFYMVMYDLWLRRSSVRVQ 352 (361)
Q Consensus 307 ~~i~~mr~~l~~-~~~~f~~~~--~~~~~Daf~~~~~~l~~rr~~~r~~ 352 (361)
+++.+||+++.+ +.+||+++. +.+..|||+++++++|+|++..+..
T Consensus 413 ~~~~~m~~~v~~~v~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~~~ 461 (464)
T KOG1021|consen 413 EEVLRMRENVIRLVPRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLRSR 461 (464)
T ss_pred HHHHHHHHHHHHHHHhhEEeCCCCCCCcchhHHHHHhhhhhcccccccc
Confidence 999999999995 999999998 7888999999999999999887744
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=2.1e-58 Score=440.32 Aligned_cols=276 Identities=34% Similarity=0.610 Sum_probs=222.5
Q ss_pred hCCCeEEEeCCCCCCCCccccC------CcCCCCCCCchhHHHHHHHHhcCCcccCCCCcccEEEEccccccccc-CCCC
Q 018084 27 NRSFRVYVYPHRRNDPFANVLL------PVDFEPRGNYASESYFKKVFMKSHFVTKDPSKADLFFLPFSIARMRH-DRRI 99 (361)
Q Consensus 27 ~~~~kIYVY~~~~~~~~~~~~~------p~~~~~~~~y~~E~~~~~~L~~S~~~T~dP~eAdlF~vP~~~~~~~~-~~~~ 99 (361)
.++|||||||++ +.++..++ ...++...+|++|.+|+++|++|+++|.||+|||+||||++..+... .++.
T Consensus 2 ~~~lkVYVY~lp--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~ 79 (302)
T PF03016_consen 2 HRGLKVYVYPLP--PKFNKDLLDPREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGS 79 (302)
T ss_pred CCCCEEEEEeCC--ccccccceeccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCC
Confidence 368999999998 45665554 12245678999999999999999999999999999999999877621 0100
Q ss_pred -CCCChhhHHHHHHHHHhhcCCccccCCCcceEEEecCCCCchhhhhhHHHhhceEEEe-ccCCCccCCcccCCccccCc
Q 018084 100 -GTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEKAWEVKLNAIQVV-CSSSYFISGHIAHKDVSLPQ 177 (361)
Q Consensus 100 -~~~~~~~~l~~~v~~~~~~~PyWnR~~G~dH~~v~~~d~g~~~~~~~~~~~~nai~~~-~~~~~~~~~frp~~Dv~iP~ 177 (361)
........+..++..+++++|||||++|+||||+++|++|.+.....+.+..+++.++ ..+.+...+|+|++||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P~ 159 (302)
T PF03016_consen 80 PNSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIPP 159 (302)
T ss_pred ccchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCeeccc
Confidence 1122344556777778889999999999999999999988887655455555665544 35556789999999999998
Q ss_pred cCCCCC-C----CCCCCCCCCceEEEeeccCC-------hhHHHHHHHHHhcCCCceEecCC----CcchHHhhhcCccE
Q 018084 178 IWPRQE-D----PPKLGSSKRNKLAFFAGAVN-------SPVREKLLQVWRNDSEIYAHSGR----LKTPYADGLLGSKF 241 (361)
Q Consensus 178 ~~p~~~-~----~~~~~~~~R~~l~~F~G~~~-------~~~R~~L~~~~~~~~~~~~~~g~----~~~~y~~~l~~S~F 241 (361)
+.+... . ....++.+|++|++|+|++. +.+|+.|++.|++.++..+..+. .+.+|.+.|++|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~F 239 (302)
T PF03016_consen 160 FVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDPDFRCSDGSETCPSPSEYMELLRNSKF 239 (302)
T ss_pred cccccccCCccccccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCCcceeeecccccccchHHHHhcccCeE
Confidence 755442 1 12346789999999999842 46999999999887765433221 13489999999999
Q ss_pred EEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC
Q 018084 242 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 242 CL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i 304 (361)
||||+|+++++.||+|||.+|||||||+|++.|||+++|||++|||+|+++++++|+++|++|
T Consensus 240 CL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 240 CLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred EEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-34 Score=279.37 Aligned_cols=298 Identities=18% Similarity=0.269 Sum_probs=214.2
Q ss_pred cHHhhh--CCCeEEEeCCCCCCCCccccCCcCCCCCCCc---hhHHHHHHHHhcCCcccCCCCcccEEEEcccccccccC
Q 018084 22 DYKQMN--RSFRVYVYPHRRNDPFANVLLPVDFEPRGNY---ASESYFKKVFMKSHFVTKDPSKADLFFLPFSIARMRHD 96 (361)
Q Consensus 22 ~y~~~~--~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y---~~E~~~~~~L~~S~~~T~dP~eAdlF~vP~~~~~~~~~ 96 (361)
||++|+ ++|.|||||..+. . .+++ -....|.+.+.+..|.|+||+.||++++-+ ..+...
T Consensus 186 dySRCsltSgfPVYvyd~D~~---~----------~G~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lv--ge~q~P 250 (907)
T KOG2264|consen 186 DYSRCSLTSGFPVYVYDSDII---T----------SGQSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLV--GEIQSP 250 (907)
T ss_pred ccccccccCCceeEEecccee---e----------cccchHHHHHHHHHHhcccceeEeeCCCccEEEEEEe--ccccCC
Confidence 899999 9999999997632 1 1222 134467778888899999999999999842 222221
Q ss_pred CCCCCCChhhHHHHHHHHHhhcCCccccCCCcceEEEecCCCCchhhhh-hHHHhhceEEEeccCCCccCCcccCCcccc
Q 018084 97 RRIGTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEK-AWEVKLNAIQVVCSSSYFISGHIAHKDVSL 175 (361)
Q Consensus 97 ~~~~~~~~~~~l~~~v~~~~~~~PyWnR~~G~dH~~v~~~d~g~~~~~~-~~~~~~nai~~~~~~~~~~~~frp~~Dv~i 175 (361)
.-..+.+ ++. +-++|||. ++|+||++++.+.-. ...+. ....++.||.+ .+.|+...||||+|.++
T Consensus 251 ~~l~p~e--------lek-lyslp~w~-~dg~Nhvl~Nl~r~s-~~~n~lyn~~t~raivv--Qssf~~~q~RpgfDl~V 317 (907)
T KOG2264|consen 251 VVLTPAE--------LEK-LYSLPHWR-TDGFNHVLFNLGRPS-DTQNLLYNFQTGRAIVV--QSSFYTVQIRPGFDLPV 317 (907)
T ss_pred CcCChHh--------hhh-hhcCcccc-CCCcceEEEEccCcc-ccccceeEeccCceEEE--eecceeeeeccCCCccc
Confidence 1111112 233 25689998 699999999975321 11110 11234567655 56778899999999999
Q ss_pred Ccc-CCCCC----CCCCCCCCCCceEEEeeccCCh------hHHHHHHHHHhcC-------CCceEe-----cC---C--
Q 018084 176 PQI-WPRQE----DPPKLGSSKRNKLAFFAGAVNS------PVREKLLQVWRND-------SEIYAH-----SG---R-- 227 (361)
Q Consensus 176 P~~-~p~~~----~~~~~~~~~R~~l~~F~G~~~~------~~R~~L~~~~~~~-------~~~~~~-----~g---~-- 227 (361)
|++ ++..+ +....-|.+|++|+.|+|++.+ ..+....++..+- +..+.+ +. .
T Consensus 318 ~pv~h~~~e~~~~e~~p~vP~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~S 397 (907)
T KOG2264|consen 318 DPVNHIAVEKNFVELTPLVPFQRKYLITLQGKIESDNSSLNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCS 397 (907)
T ss_pred CcccccccCccceecCcccchhhheeEEEEeeecccccccchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCC
Confidence 865 44443 2344567899999999997632 2333222222111 111111 10 1
Q ss_pred ------Cc--chHHhhhcCccEEEe-ecCCCC-----CchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCC
Q 018084 228 ------LK--TPYADGLLGSKFCLH-VKGFEV-----NTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLD 293 (361)
Q Consensus 228 ------~~--~~y~~~l~~S~FCL~-p~G~~~-----~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~ 293 (361)
|+ .+..++++.|+|||+ |+|++- .-.|++||++.||||||+++...|||+|.|||++.++++|..+
T Consensus 398 Lpewalcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR 477 (907)
T KOG2264|consen 398 LPEWALCGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKAR 477 (907)
T ss_pred cchhhhccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccc
Confidence 11 267899999999987 888853 2379999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhCCCHHHHHHHHHHHHhhhccceeccCCCCccHHHHHHHHHHHHHhccccc
Q 018084 294 IPLLKKILKGISSEEYLLLQNNVLKVRKHFQWHVFPSDYDAFYMVMYDLWLRRSSVRVQ 352 (361)
Q Consensus 294 v~~l~~~L~~i~~~~i~~mr~~l~~~~~~f~~~~~~~~~Daf~~~~~~l~~rr~~~r~~ 352 (361)
+++++.+|+++.+.++.+||++ ++|.|+++.++.++...++.+.++.|+.|.-.
T Consensus 478 ~tE~HFllrs~~dsDll~mRRq-----GRl~wEtYls~~~~~~~tvlA~lR~rlqIP~r 531 (907)
T KOG2264|consen 478 LTEAHFLLRSFEDSDLLEMRRQ-----GRLFWETYLSDRHLLARTVLAALRYRLQIPTR 531 (907)
T ss_pred cchHHHHHHhcchhhHHHHHhh-----hhhhHHHHhhHHHHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999995 57889999999999777777888999887643
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.92 E-value=1.2e-24 Score=212.58 Aligned_cols=307 Identities=17% Similarity=0.158 Sum_probs=219.6
Q ss_pred cChhhhhh---cHHhhh-CCCeEEEeCCCCCCCCccccCCcCC-CCCCCchhHH-HHHHHHhcCCcccCCCCcccEEEEc
Q 018084 14 HDRDIFLE---DYKQMN-RSFRVYVYPHRRNDPFANVLLPVDF-EPRGNYASES-YFKKVFMKSHFVTKDPSKADLFFLP 87 (361)
Q Consensus 14 ~~~~~f~~---~y~~~~-~~~kIYVY~~~~~~~~~~~~~p~~~-~~~~~y~~E~-~~~~~L~~S~~~T~dP~eAdlF~vP 87 (361)
++|+-|.. +|-+|. ...|||+|.+++- +.... .....+..|. .+.++...|.+.|.|+++||+|. |
T Consensus 79 g~~sc~~~dcf~~y~c~~~~~KvyIy~l~~~-------vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf~-P 150 (691)
T KOG1022|consen 79 GLPSCFLADCFLYYQCLFFETKVYIYMLGDI-------VDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLFM-P 150 (691)
T ss_pred CCccceehhhhhhhhccccccceeEEehhhh-------hhhhcccccccccHHHHHHHHHHHhccceecCCCceEEEe-c
Confidence 56666655 567787 7799999999842 11110 1112233443 45588889999999999999998 4
Q ss_pred ccccccccCCCCCCCChhhHHHHHHHHHhhcCCccccCCCcceEEEecCCCCchhhhhhHHH-hhceEEEeccCCCccCC
Q 018084 88 FSIARMRHDRRIGTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEKAWEV-KLNAIQVVCSSSYFISG 166 (361)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~PyWnR~~G~dH~~v~~~d~g~~~~~~~~~~-~~nai~~~~~~~~~~~~ 166 (361)
+++.+.. +.++. .+ -+.+++++-.|.| |.||..++.-+.|+...+...+. ..+|+. ..+++..+.
T Consensus 151 -s~d~lnQ-n~l~~-----kl---~~~ala~l~~wdr--g~nH~~fnmLpGg~p~yntaldv~~d~a~~--~gggf~tW~ 216 (691)
T KOG1022|consen 151 -SSDELNQ-NPLSW-----KL---EKVALAKLLVWDR--GVNHEGFNMLPGGDPTYNTALDVGQDEAWY--SGGGFGTWK 216 (691)
T ss_pred -chhhhcc-CcchH-----HH---HHHHHhcccchhc--ccceeeEeeccCCCCCccccccCCcceeEE--ecCCcCccc
Confidence 4554433 21211 11 1223466679998 99999999877665543322222 224432 356788999
Q ss_pred cccCCccccCccCCCCCCCCCCCCCCCceEEEeecc-CChhHHHHHHHHHhcCCCceEecCCC---------------cc
Q 018084 167 HIAHKDVSLPQIWPRQEDPPKLGSSKRNKLAFFAGA-VNSPVREKLLQVWRNDSEIYAHSGRL---------------KT 230 (361)
Q Consensus 167 frp~~Dv~iP~~~p~~~~~~~~~~~~R~~l~~F~G~-~~~~~R~~L~~~~~~~~~~~~~~g~~---------------~~ 230 (361)
||+|+||.||...|.....+...+..|..++--.|- ++..+|..|.++........+..+.| ..
T Consensus 217 yr~g~dv~ipv~Sp~~v~~~~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~ 296 (691)
T KOG1022|consen 217 YRKGNDVYIPVRSPGNVGRAFLYDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDV 296 (691)
T ss_pred ccCCCccccccccccccCccccCCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhccccc
Confidence 999999999998887655555666777766655553 67789988888776555544443222 12
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCCCHHHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGISSEEYL 310 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i~~~~i~ 310 (361)
+|...+...+||+.-+|.+.+.+.+.+-+.+||+|||..|.+.+||++|+||...||+++|..+..+.+.|++++...+-
T Consensus 297 ~yp~~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~ 376 (691)
T KOG1022|consen 297 KYPSSLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGIC 376 (691)
T ss_pred ccccccceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchh
Confidence 89999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccceeccCCCCccHHHHHHHHHHHHHh
Q 018084 311 LLQNNVLKVRKHFQWHVFPSDYDAFYMVMYDLWLRRS 347 (361)
Q Consensus 311 ~mr~~l~~~~~~f~~~~~~~~~Daf~~~~~~l~~rr~ 347 (361)
+||.+... .+..++.+.-+...++.+.+..|+
T Consensus 377 sl~~r~~~-----~rl~rf~~~~~~~l~~~~~i~~~l 408 (691)
T KOG1022|consen 377 SLQLRRIG-----SRLNRFPPFKRGFLLLLSSIGKRL 408 (691)
T ss_pred hhhhhhhh-----hhHhhcchHHHHHHHHHHHHhhhh
Confidence 99986432 344445555444444445555443
No 5
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=97.41 E-value=0.00043 Score=68.05 Aligned_cols=141 Identities=20% Similarity=0.189 Sum_probs=70.5
Q ss_pred cCCcccCCccccCccCCCCCC--C---C-CCCCCCCceE-EEeeccCC-hhHHHHHHHHHhcCCCceEecCCCc------
Q 018084 164 ISGHIAHKDVSLPQIWPRQED--P---P-KLGSSKRNKL-AFFAGAVN-SPVREKLLQVWRNDSEIYAHSGRLK------ 229 (361)
Q Consensus 164 ~~~frp~~Dv~iP~~~p~~~~--~---~-~~~~~~R~~l-~~F~G~~~-~~~R~~L~~~~~~~~~~~~~~g~~~------ 229 (361)
..+||.+.||.+|+....... . . ......++.+ ++++...+ ...|..+++.++.. -.+-..|.|.
T Consensus 139 TMTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~-~~vd~yG~c~~~~~~~ 217 (349)
T PF00852_consen 139 TMTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKY-IPVDSYGKCGNNNPCP 217 (349)
T ss_dssp ----------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTT-S-EEE-SSTT--SSS-
T ss_pred ccccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhh-cCeEccCCCCCCCCcc
Confidence 346898999999975422211 1 0 1122344444 45555543 23488888888776 3344567761
Q ss_pred -chHHhhhcCccEEEeecC---CCCCchhHHHHHhcCceEEEEe--c-ce--ecCCCCCCCCCcEEEEEcCCChhhHHHH
Q 018084 230 -TPYADGLLGSKFCLHVKG---FEVNTARIADSLYYGCVPVIIA--N-HY--DLPFADILNWKSFSIVVATLDIPLLKKI 300 (361)
Q Consensus 230 -~~y~~~l~~S~FCL~p~G---~~~~s~Rl~eai~~GCIPVii~--d-~~--~lPF~~~idw~~fsv~v~e~~v~~l~~~ 300 (361)
....+.+++-+|.|+..- .+.-+--|++|+.+|||||+++ . ++ .+|=...|+.++|. .+.+|.+.
T Consensus 218 ~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~La~y 291 (349)
T PF00852_consen 218 RDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKELADY 291 (349)
T ss_dssp -S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHHHHHH
T ss_pred cccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHHHHHH
Confidence 267899999999998653 3346889999999999999999 4 23 36667778888773 56778888
Q ss_pred HhCC--CHHHHHH
Q 018084 301 LKGI--SSEEYLL 311 (361)
Q Consensus 301 L~~i--~~~~i~~ 311 (361)
|+.+ .++.+.+
T Consensus 292 l~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 292 LKYLDKNDELYNK 304 (349)
T ss_dssp HHHHHT-HHHHH-
T ss_pred HHHHhcCHHHHhh
Confidence 8777 3555544
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.37 E-value=0.0018 Score=60.79 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=71.0
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHH
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 307 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~ 307 (361)
.+..+.|..|.+.++|.-....+..++||+.+|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .++
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPE 343 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChH
Confidence 4788999999999999866666789999999998 6777765 3455556657778888888887777777664 566
Q ss_pred HHHHHHHHHH-hhhccceec
Q 018084 308 EYLLLQNNVL-KVRKHFQWH 326 (361)
Q Consensus 308 ~i~~mr~~l~-~~~~~f~~~ 326 (361)
...+|.++.+ .+.+.+.|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 344 LRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 7788888776 455665444
No 7
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.23 E-value=0.0033 Score=58.75 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=70.2
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHH
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 307 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~ 307 (361)
.+..+.|+++.+++.|.........++|||.+||. ||.++....+ +++++-....+.++..++.++.+.+..+ .++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 46778999999999998766667889999999995 5666533222 2334444567788888887777666665 678
Q ss_pred HHHHHHHHHHhhhccceecc
Q 018084 308 EYLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 308 ~i~~mr~~l~~~~~~f~~~~ 327 (361)
...+|.++.+...+.|.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~ 341 (348)
T cd03820 322 LRKRMGANARESAERFSIEN 341 (348)
T ss_pred HHHHHHHHHHHHHHHhCHHH
Confidence 88889988877777776654
No 8
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.19 E-value=0.0027 Score=64.53 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=77.2
Q ss_pred cCCCc-chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCC---CCcEEEEEcCCChhhHHHH
Q 018084 225 SGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILN---WKSFSIVVATLDIPLLKKI 300 (361)
Q Consensus 225 ~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~id---w~~fsv~v~e~~v~~l~~~ 300 (361)
.|..+ .+..+.|+.+..++.|......+.-++|||.+| +|||.++.-. ..++++ ..+..+.++..+..++.+.
T Consensus 317 ~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~gg--~~eiv~~~~~~~~G~lv~~~d~~~la~~ 393 (465)
T PLN02871 317 TGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAGG--IPDIIPPDQEGKTGFLYTPGDVDDCVEK 393 (465)
T ss_pred eccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCCC--cHhhhhcCCCCCceEEeCCCCHHHHHHH
Confidence 34433 378889999999999988776778899999999 7999987432 334443 2677888888888876666
Q ss_pred HhCC--CHHHHHHHHHHHHhhhccceeccCCCCc
Q 018084 301 LKGI--SSEEYLLLQNNVLKVRKHFQWHVFPSDY 332 (361)
Q Consensus 301 L~~i--~~~~i~~mr~~l~~~~~~f~~~~~~~~~ 332 (361)
|..+ +++...+|.++.++..+.|.|.......
T Consensus 394 i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l 427 (465)
T PLN02871 394 LETLLADPELRERMGAAAREEVEKWDWRAATRKL 427 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6554 5777888988888776777776554433
No 9
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.16 E-value=0.0027 Score=60.33 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=68.7
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.|+.|..|+.|.+....+..++|||.+|| |||.++.-. ..+++.=....+.++..+..++.+.+..+ .++.
T Consensus 259 ~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 259 ELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 677899999999999887777789999999999 788887432 33444334566777877776655555554 5788
Q ss_pred HHHHHHHHHhhhccceec
Q 018084 309 YLLLQNNVLKVRKHFQWH 326 (361)
Q Consensus 309 i~~mr~~l~~~~~~f~~~ 326 (361)
+.+|.++..+....+.|+
T Consensus 336 ~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 336 RRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHhhcCHH
Confidence 888988887766666554
No 10
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.14 E-value=0.0031 Score=60.05 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=68.7
Q ss_pred hHHhhhcCccEEEeecCCC--CCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CH
Q 018084 231 PYADGLLGSKFCLHVKGFE--VNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SS 306 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~--~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~ 306 (361)
+..+.|+.|.+++.|.... ..+..+.|||.+|| |||.+|.-. .+.+.+ ....+.++..+..++.+.|..+ .+
T Consensus 260 ~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 260 ELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLADP 335 (366)
T ss_pred HHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcCh
Confidence 6788999999999998777 67788999999999 999887433 333334 3445667777777766666554 35
Q ss_pred HHHHHHHHHHHhhhccceecc
Q 018084 307 EEYLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 307 ~~i~~mr~~l~~~~~~f~~~~ 327 (361)
+...+|+++.++..+.|.|+.
T Consensus 336 ~~~~~~~~~~~~~~~~~s~~~ 356 (366)
T cd03822 336 ELAQALRARAREYARAMSWER 356 (366)
T ss_pred HHHHHHHHHHHHHHhhCCHHH
Confidence 778889988887766666654
No 11
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.12 E-value=0.0016 Score=56.22 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=56.8
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCCC--HH
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGIS--SE 307 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i~--~~ 307 (361)
.+..+.++.|.+.++|......+.-++|||.+|| |||+++. -.+.+++.=..-.+.++..++.++.+.+..+- ++
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHH
Confidence 4788899999999999988888899999999999 6777772 22223332222456677778887777776653 34
Q ss_pred HHHHHHHHHH
Q 018084 308 EYLLLQNNVL 317 (361)
Q Consensus 308 ~i~~mr~~l~ 317 (361)
...+|.++.+
T Consensus 161 ~~~~l~~~~~ 170 (172)
T PF00534_consen 161 LRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555655543
No 12
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.98 E-value=0.0057 Score=57.91 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=61.5
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.+..+.++++|.-....+..++|||.+|| |||.++.-- ..+.+.= ...+.++.+ ..++.+.+..+ .++.
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~~ 348 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKVP--WQELIEY-GCGWVVDDD-VDALAAALRRALELPQR 348 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCCC--HHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHHH
Confidence 677889999999999876666788999999997 888877432 2333322 444445443 35444444433 3477
Q ss_pred HHHHHHHHHhh-hccceecc
Q 018084 309 YLLLQNNVLKV-RKHFQWHV 327 (361)
Q Consensus 309 i~~mr~~l~~~-~~~f~~~~ 327 (361)
..+|.++.++. .++|.|+.
T Consensus 349 ~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 349 LKAMGENGRALVEERFSWTA 368 (375)
T ss_pred HHHHHHHHHHHHHHhcCHHH
Confidence 88888887765 67776653
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.98 E-value=0.0071 Score=59.85 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=78.3
Q ss_pred HHHHHHHHHhc--CCCceEecCCCcc-hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCC
Q 018084 207 VREKLLQVWRN--DSEIYAHSGRLKT-PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWK 283 (361)
Q Consensus 207 ~R~~L~~~~~~--~~~~~~~~g~~~~-~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~ 283 (361)
.++.+.+.... ..+.+...|..+. ++.+.|+.|..++.|.-....+.-++|||++|| |||.+|.- +..++|.=.
T Consensus 266 ~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~--g~~e~i~~~ 342 (396)
T cd03818 266 WKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA--PVREVITDG 342 (396)
T ss_pred HHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC--CchhhcccC
Confidence 34555554432 2234555676553 778899999999887655445567999999999 88887742 455666655
Q ss_pred cEEEEEcCCChhhHHHHHhCC--CHHHHHHHHHHHHh-hhccceec
Q 018084 284 SFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVLK-VRKHFQWH 326 (361)
Q Consensus 284 ~fsv~v~e~~v~~l~~~L~~i--~~~~i~~mr~~l~~-~~~~f~~~ 326 (361)
.-.+.++..+..++.+.+..+ .++...+|.++.++ +.++|.|+
T Consensus 343 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 343 ENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred CceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHH
Confidence 667788888877666555443 46677888877765 44456554
No 14
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.95 E-value=0.011 Score=56.95 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=69.4
Q ss_pred eEecCCCc-chHHhhhcCccEEEeecCC------CCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCCh
Q 018084 222 YAHSGRLK-TPYADGLLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDI 294 (361)
Q Consensus 222 ~~~~g~~~-~~y~~~l~~S~FCL~p~G~------~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v 294 (361)
+...|..+ .+..+.+..|..++.|.-. ......++|||.+|| |||.+|.-. ..+.+.=....+.++..+.
T Consensus 247 v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~ 323 (367)
T cd05844 247 VTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDV 323 (367)
T ss_pred EEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCH
Confidence 33344433 3677888899988887532 224578999999997 999888643 3344444566788888888
Q ss_pred hhHHHHHhCC--CHHHHHHHHHHHHh-hhccceecc
Q 018084 295 PLLKKILKGI--SSEEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 295 ~~l~~~L~~i--~~~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
.++.+.|..+ +++...+|.++.++ +.++|.|+.
T Consensus 324 ~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 359 (367)
T cd05844 324 AALAAALGRLLADPDLRARMGAAGRRRVEERFDLRR 359 (367)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 7776666554 46667788777665 456776653
No 15
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.78 E-value=0.016 Score=55.54 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=68.5
Q ss_pred cchHHhhhcCccEEEeec-CCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHh-CC--
Q 018084 229 KTPYADGLLGSKFCLHVK-GFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK-GI-- 304 (361)
Q Consensus 229 ~~~y~~~l~~S~FCL~p~-G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~-~i-- 304 (361)
..+..+.|+.|..++.|. -......-++|||++|| |||.+|. -+..+.+.-....+.++..+..++.+.|. .+
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 347888999999999987 33445578999999999 8888773 34456665565677788888888777763 22
Q ss_pred CHHHHHHHHHHHHhh-hccceec
Q 018084 305 SSEEYLLLQNNVLKV-RKHFQWH 326 (361)
Q Consensus 305 ~~~~i~~mr~~l~~~-~~~f~~~ 326 (361)
++++..+|.++.++. ..+|.|+
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhc
Confidence 678888888887754 4455443
No 16
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.75 E-value=0.012 Score=55.96 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=66.4
Q ss_pred chHHhhhcCccEEEeecCCCCC-----chhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC
Q 018084 230 TPYADGLLGSKFCLHVKGFEVN-----TARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~-----s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i 304 (361)
.+..+.|..+.++++|...+.. ...++||+.+|| |||.++.-..+ +.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESA--ELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCch--hhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 3777899999999999776533 456899999997 88887653222 222222566777877887777777665
Q ss_pred --CHHHHHHHHHHHHhhhc-cceecc
Q 018084 305 --SSEEYLLLQNNVLKVRK-HFQWHV 327 (361)
Q Consensus 305 --~~~~i~~mr~~l~~~~~-~f~~~~ 327 (361)
.+++..+|.++.++... +|.|+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEKFSREK 388 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHhhcHHH
Confidence 67888888887765443 665543
No 17
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.75 E-value=0.0085 Score=57.03 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=67.5
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhC-C-CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG-I-SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~-i-~~~~ 308 (361)
+..+.++.+.+++.|.-....+.-++|||.+|| |||.++.- ...+++ .+..+.++..+..++.+.|.. + +++.
T Consensus 265 ~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 339 (365)
T cd03809 265 ELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPAL 339 (365)
T ss_pred HHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHHH
Confidence 677889999999998755555677999999997 77777642 233334 345677788888877777766 3 5777
Q ss_pred HHHHHHHHHhhhccceecc
Q 018084 309 YLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 309 i~~mr~~l~~~~~~f~~~~ 327 (361)
..+|.++.+++.+.|.|+.
T Consensus 340 ~~~~~~~~~~~~~~~sw~~ 358 (365)
T cd03809 340 REELRERGLARAKRFSWEK 358 (365)
T ss_pred HHHHHHHHHHHHHhCCHHH
Confidence 8888888877777776654
No 18
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.73 E-value=0.017 Score=57.08 Aligned_cols=104 Identities=10% Similarity=0.011 Sum_probs=71.2
Q ss_pred eEecCCCc-chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHH
Q 018084 222 YAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKI 300 (361)
Q Consensus 222 ~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~ 300 (361)
+...|..+ .+..+.|+.+..++.|.=......-++|||.+|| |||.++.-. ..++|.=....+.++..+..++.+.
T Consensus 285 v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~ 361 (405)
T TIGR03449 285 VRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADA 361 (405)
T ss_pred EEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHH
Confidence 44445433 3677889999999888655555678999999997 888887422 2344433455677788888766555
Q ss_pred HhCC--CHHHHHHHHHHHHhhhccceeccC
Q 018084 301 LKGI--SSEEYLLLQNNVLKVRKHFQWHVF 328 (361)
Q Consensus 301 L~~i--~~~~i~~mr~~l~~~~~~f~~~~~ 328 (361)
|..+ .++...+|.++.++..+.|.|+..
T Consensus 362 i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~ 391 (405)
T TIGR03449 362 LARLLDDPRTRIRMGAAAVEHAAGFSWAAT 391 (405)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5443 467778888888776677767653
No 19
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.71 E-value=0.015 Score=54.58 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=64.8
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.++.|.+|+.|......+..++|||.+|| |||.+|.-.. .+.+.=....+.++..+..++.+.+..+ .++.
T Consensus 256 ~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~~--~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~ 332 (359)
T cd03808 256 DVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPGC--REAVIDGVNGFLVPPGDAEALADAIERLIEDPEL 332 (359)
T ss_pred cHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCCc--hhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHH
Confidence 567789999999999877667788999999996 7888764322 2333323456677877777666666554 4677
Q ss_pred HHHHHHHHHhh-hccceec
Q 018084 309 YLLLQNNVLKV-RKHFQWH 326 (361)
Q Consensus 309 i~~mr~~l~~~-~~~f~~~ 326 (361)
..+|.++.++. .++|.|+
T Consensus 333 ~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 333 RARMGQAARKRAEEEFDEE 351 (359)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 77777776654 5555443
No 20
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.67 E-value=0.014 Score=56.87 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=67.6
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHH
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 307 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~ 307 (361)
.+..+.|+.|..+++|.-......-++|||.+|| |||.+|.- ...+++.-......++..+..++.+.|..+ .++
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 3678889999999888655556788999999996 99998853 234555555667788888887766666554 456
Q ss_pred HHHHHHHHHHh-hhccceecc
Q 018084 308 EYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 308 ~i~~mr~~l~~-~~~~f~~~~ 327 (361)
...+|.++.++ +.+.|.|+.
T Consensus 341 ~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 341 ARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 66677666654 346665543
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.46 E-value=0.031 Score=55.96 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=68.6
Q ss_pred cCCCc-chHHhhhcCccEEEeecCC------CCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhH
Q 018084 225 SGRLK-TPYADGLLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLL 297 (361)
Q Consensus 225 ~g~~~-~~y~~~l~~S~FCL~p~G~------~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l 297 (361)
.|..+ .+..+.|+.+..++.|.=. .....-++|||.+|| |||.++.--. .++|.=..-.+.+++.+..++
T Consensus 284 ~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g~--~E~v~~~~~G~lv~~~d~~~l 360 (406)
T PRK15427 284 PGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSGI--PELVEADKSGWLVPENDAQAL 360 (406)
T ss_pred eCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCCc--hhhhcCCCceEEeCCCCHHHH
Confidence 34433 3678899999999988521 223467999999996 9999875332 345544556678898888877
Q ss_pred HHHHhCC---CHHHHHHHHHHHHh-hhccceec
Q 018084 298 KKILKGI---SSEEYLLLQNNVLK-VRKHFQWH 326 (361)
Q Consensus 298 ~~~L~~i---~~~~i~~mr~~l~~-~~~~f~~~ 326 (361)
.+.|..+ +++...+|.++.++ +.++|.|+
T Consensus 361 a~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 361 AQRLAAFSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 7766654 67778888888764 55666554
No 22
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.38 E-value=0.039 Score=53.24 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=68.2
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.|+.|..++.|.-......-++|||.+| +|||.++.-. ..+++.-..-...++..+..++.+.+..+ .++.
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAGG--IPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDEL 339 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCCC--chhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHH
Confidence 67888999999999976555667899999999 5888887542 34555544555677877877766655443 5778
Q ss_pred HHHHHHHHHhh-hccceec
Q 018084 309 YLLLQNNVLKV-RKHFQWH 326 (361)
Q Consensus 309 i~~mr~~l~~~-~~~f~~~ 326 (361)
..+|+++.++. .++|.|+
T Consensus 340 ~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 340 WQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 88999888865 6666554
No 23
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=96.37 E-value=0.033 Score=53.05 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=63.8
Q ss_pred chHHhhhcCccEEEeecCC------CCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhC
Q 018084 230 TPYADGLLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG 303 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~------~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~ 303 (361)
.+..+.++++.++++|... ...+..++|||.+||- ||.++.- ...+++.=.+..+.+++.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~P-vi~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLP-VISTDVS--GIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCC-EEecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 3678899999999998655 4456889999999995 5555532 23344443445667777777666555554
Q ss_pred C--CHHHHHHHHHHHHh-hhccceecc
Q 018084 304 I--SSEEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 304 i--~~~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
+ .+++..+|.++.++ +...|.|+.
T Consensus 324 ~~~~~~~~~~~~~~a~~~~~~~~s~~~ 350 (355)
T cd03799 324 LLDDPELRREMGEAGRARVEEEFDIRK 350 (355)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4 46667888887764 455665553
No 24
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.32 E-value=0.029 Score=52.98 Aligned_cols=87 Identities=16% Similarity=0.060 Sum_probs=62.4
Q ss_pred chHHhhhcCccEEEeecC-CCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CH
Q 018084 230 TPYADGLLGSKFCLHVKG-FEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SS 306 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G-~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~ 306 (361)
.+..+.++.|..+++|.- ....+..++|||.+| +|||.++.- ...+.++-....+.++..++.++.+.+..+ .+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 367788999999999964 345667899999999 577777632 234556666678888888877666665544 57
Q ss_pred HHHHHHHHHHHhh
Q 018084 307 EEYLLLQNNVLKV 319 (361)
Q Consensus 307 ~~i~~mr~~l~~~ 319 (361)
+...+|+++.++.
T Consensus 331 ~~~~~~~~~~~~~ 343 (359)
T cd03823 331 DLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHhHHHh
Confidence 7777777776443
No 25
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=96.28 E-value=0.059 Score=51.00 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=59.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.|+.|.++++|......+..++|||.+|| |||.++.- .+.+.+.=....+.++..+. ++.+.+..+ .++.
T Consensus 271 ~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~ 346 (374)
T cd03817 271 ELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPEL 346 (374)
T ss_pred HHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChHH
Confidence 678889999999999876666788999999987 56666532 23344433345566666653 333333332 3556
Q ss_pred HHHHHHHHHhhhccc
Q 018084 309 YLLLQNNVLKVRKHF 323 (361)
Q Consensus 309 i~~mr~~l~~~~~~f 323 (361)
..+|+++.++....+
T Consensus 347 ~~~~~~~~~~~~~~~ 361 (374)
T cd03817 347 RRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888877665554
No 26
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.14 E-value=0.03 Score=55.64 Aligned_cols=103 Identities=8% Similarity=0.015 Sum_probs=70.6
Q ss_pred eEecCCCc-chHHhhhcCccEEEeecCCCC----CchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhh
Q 018084 222 YAHSGRLK-TPYADGLLGSKFCLHVKGFEV----NTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPL 296 (361)
Q Consensus 222 ~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~----~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~ 296 (361)
+...|..+ .+..+.|+.|..++.|.-.+. ....++|||++|| |||.++.--....+++. ...+.++..++.+
T Consensus 286 v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~-PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~ 362 (412)
T PRK10307 286 VHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGR-NVVATAEPGTELGQLVE--GIGVCVEPESVEA 362 (412)
T ss_pred eEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCC-CEEEEeCCCchHHHHHh--CCcEEeCCCCHHH
Confidence 33345433 367788999999988753322 2345899999995 88888743223345566 4677888888888
Q ss_pred HHHHHhCC--CHHHHHHHHHHHHh-hhccceecc
Q 018084 297 LKKILKGI--SSEEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 297 l~~~L~~i--~~~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
+.+.|..+ +++...+|+++.++ +.++|.|+.
T Consensus 363 la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 396 (412)
T PRK10307 363 LVAAIAALARQALLRPKLGTVAREYAERTLDKEN 396 (412)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 87777665 46777888888876 556777765
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=96.05 E-value=0.052 Score=52.97 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=64.8
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCCh------hhHHHHHhC
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDI------PLLKKILKG 303 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v------~~l~~~L~~ 303 (361)
.+..+.|+.|..++.|.-......-++|||.+|| |||.+|.-. ..+++.=....+.++..+. ..+.+.|..
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 3677889999999998765556677899999999 899887432 2344433444666666665 555555544
Q ss_pred C--CHHHHHHHHHHHHh-hhccceecc
Q 018084 304 I--SSEEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 304 i--~~~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
+ ++++..+|.++.++ +.+.|.|+.
T Consensus 349 l~~~~~~~~~~~~~a~~~~~~~~s~~~ 375 (388)
T TIGR02149 349 LLADPELAKKMGIAGRKRAEEEFSWGS 375 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3 57777888877765 456676653
No 28
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.05 E-value=0.021 Score=55.54 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=67.3
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.++.|..+++|.-......-++|||.+|+ |||.++.- ...+.|.=....+.++..+..++.+.+..+ +++.
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~-Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 371 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACGL-PVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPAL 371 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcCC-CEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 567788999999999766666678999999995 99988742 233444434567778877777666655544 4778
Q ss_pred HHHHHHHHHhhh-ccceecc
Q 018084 309 YLLLQNNVLKVR-KHFQWHV 327 (361)
Q Consensus 309 i~~mr~~l~~~~-~~f~~~~ 327 (361)
..+|.++.++.. ++|.|+.
T Consensus 372 ~~~~~~~a~~~~~~~~s~~~ 391 (398)
T cd03800 372 RRRLSRAGLRRARARYTWER 391 (398)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 888888876644 7776653
No 29
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=96.01 E-value=0.03 Score=52.68 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=61.3
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC-CHHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI-SSEEY 309 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i-~~~~i 309 (361)
+..+.+.+|.++++|......+..++||+.+|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+ ...+.
T Consensus 271 ~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 271 EVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPWL 347 (377)
T ss_pred HHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH
Confidence 677899999999999877667788999999999 677776422 23344445546778888877666655544 22222
Q ss_pred HHHHHHHHhhhccceec
Q 018084 310 LLLQNNVLKVRKHFQWH 326 (361)
Q Consensus 310 ~~mr~~l~~~~~~f~~~ 326 (361)
...+++...+.+.|.|+
T Consensus 348 ~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 348 RLGRAARRRVAERFSWE 364 (377)
T ss_pred HHhHHHHHHHHHHhhHH
Confidence 33444444556666554
No 30
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.01 E-value=0.095 Score=48.82 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhH----HHHHhCCC-
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLL----KKILKGIS- 305 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l----~~~L~~i~- 305 (361)
+..+.+..|.++++|.-....+..++|||.+|| |||.+|.- ...+++.=....+.++.++...+ ..++....
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~-PvI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGT-PVVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCC-CEEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 456789999999999766556778999999999 56666543 33345544556677888887765 33333333
Q ss_pred HHHHHHHHH-HHHhhhcc
Q 018084 306 SEEYLLLQN-NVLKVRKH 322 (361)
Q Consensus 306 ~~~i~~mr~-~l~~~~~~ 322 (361)
++...+|.. +...+.++
T Consensus 333 ~~~~~~~~~~~~~~~~~~ 350 (353)
T cd03811 333 PELRERLAAAARERVARE 350 (353)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455566666 33334433
No 31
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.01 E-value=0.055 Score=50.94 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=62.3
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.|+.+..+++|......+.-++|||.+|| |||.++.-. ..+.+. +..+.++..+..++.+.+..+ .++.
T Consensus 261 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~--~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (365)
T cd03807 261 DVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVG--DTGFLVPPGDPEALAEAIEALLADPAL 335 (365)
T ss_pred cHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhh--cCCEEeCCCCHHHHHHHHHHHHhChHH
Confidence 567889999999999887667788999999997 788876422 122221 145667777776666555544 3567
Q ss_pred HHHHHHHHHh-hhccceecc
Q 018084 309 YLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 309 i~~mr~~l~~-~~~~f~~~~ 327 (361)
..+|.++.++ +.+.|.|+.
T Consensus 336 ~~~~~~~~~~~~~~~~s~~~ 355 (365)
T cd03807 336 RQALGEAARERIEENFSIEA 355 (365)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 7777776664 455665543
No 32
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.92 E-value=0.067 Score=52.87 Aligned_cols=94 Identities=7% Similarity=0.077 Sum_probs=60.6
Q ss_pred hHHhhhcCccEEEeecCC-CCCchhHHHHHhcCceEEEEecceecCCCCCC-CCCcEEEEEcCCChhhHHHHHhCC-CHH
Q 018084 231 PYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADIL-NWKSFSIVVATLDIPLLKKILKGI-SSE 307 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~-~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~i-dw~~fsv~v~e~~v~~l~~~L~~i-~~~ 307 (361)
+..+.++.|..+++|... .....-++|||++| +|||.++.-- ..+++ |-..--+.++..+..++.+.|..+ .+.
T Consensus 269 ~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 269 KMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLADP 345 (380)
T ss_pred HHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCH
Confidence 567789999999999764 44567899999999 5899988532 23443 332222345666666655555432 333
Q ss_pred HHHHHHHHHHh-hhccceecc
Q 018084 308 EYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 308 ~i~~mr~~l~~-~~~~f~~~~ 327 (361)
+..+|.++.++ +.++|.|+.
T Consensus 346 ~~~~~~~~ar~~~~~~fsw~~ 366 (380)
T PRK15484 346 ELTQIAEQAKDFVFSKYSWEG 366 (380)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 45677777664 567776664
No 33
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.89 E-value=0.067 Score=54.45 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=61.2
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCC-CCC-----cEEEEEcCCChhhHHHHHhCC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NWK-----SFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~i-dw~-----~fsv~v~e~~v~~l~~~L~~i 304 (361)
...+.++.|.++++|.-..+...-.+|||.+||.|| +++.-- ..++| |.+ ...+.+++.+..++.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI-~s~~gg--~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPI-VRRTGG--LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeE-EccCCC--ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 456788999999999888777788999999999665 454322 22332 321 556778888877666555442
Q ss_pred ------CHHHHHHHHHHHHhhhccceecc
Q 018084 305 ------SSEEYLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 305 ------~~~~i~~mr~~l~~~~~~f~~~~ 327 (361)
.++...+|.++.. .+.|.|+.
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~~ 461 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWDK 461 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcHH
Confidence 4566777766543 35666654
No 34
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=95.83 E-value=0.074 Score=50.75 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=59.6
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC---CHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI---SSE 307 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i---~~~ 307 (361)
+..+.|+.+...+.|........-++|||.+|| |||.+|.- ...+++. +....++..+..++.+.+..+ +++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~~~ 329 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVG--DSGLIVPISDPEALANKIDEILKMSGE 329 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEec--CCceEeCCCCHHHHHHHHHHHHhCCHH
Confidence 667889999999998877666788999999999 88888742 1223321 134456667776655555443 455
Q ss_pred HHHHHHHHHHhhhccceec
Q 018084 308 EYLLLQNNVLKVRKHFQWH 326 (361)
Q Consensus 308 ~i~~mr~~l~~~~~~f~~~ 326 (361)
....|.++...+.+.|.|+
T Consensus 330 ~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 330 ERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 5556655533455666554
No 35
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.82 E-value=0.033 Score=53.76 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=52.8
Q ss_pred eEecCCCcc-hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHH
Q 018084 222 YAHSGRLKT-PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKI 300 (361)
Q Consensus 222 ~~~~g~~~~-~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~ 300 (361)
+...|..+. +..+.|+.+..+++|.- ...+.-++|||++|| |||.++.-.. .+++.=.+..+.++..+...+.+.
T Consensus 244 V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~~--~e~i~~~~~G~~~~~~~~~~la~~ 319 (351)
T cd03804 244 VTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGGA--LETVIDGVTGILFEEQTVESLAAA 319 (351)
T ss_pred EEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCCC--cceeeCCCCEEEeCCCCHHHHHHH
Confidence 444454443 57889999999998865 444566899999998 9998874322 233332355777877777665555
Q ss_pred HhCC
Q 018084 301 LKGI 304 (361)
Q Consensus 301 L~~i 304 (361)
|..+
T Consensus 320 i~~l 323 (351)
T cd03804 320 VERF 323 (351)
T ss_pred HHHH
Confidence 5443
No 36
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.82 E-value=0.1 Score=50.90 Aligned_cols=104 Identities=12% Similarity=0.011 Sum_probs=66.0
Q ss_pred CceEecCCCcc-hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHH
Q 018084 220 EIYAHSGRLKT-PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLK 298 (361)
Q Consensus 220 ~~~~~~g~~~~-~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~ 298 (361)
+.+...|..+. ...+.|+.|.+++.|........-++|||.+|| |||.+|.-. ..+.|.-....+.++. +..++.
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a 355 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGK-PVIACNSGG--PLETVVDGETGFLCEP-TPEEFA 355 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCC-CEEEECCCC--cHHHhccCCceEEeCC-CHHHHH
Confidence 34555565543 556889999999998776656677899999995 777776422 1233333334455554 555554
Q ss_pred HHHhCC--CHHHHHHHHHHHHh-hhccceecc
Q 018084 299 KILKGI--SSEEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 299 ~~L~~i--~~~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
+.+..+ .++...+|+++.++ +.+.|.|..
T Consensus 356 ~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 387 (392)
T cd03805 356 EAMLKLANDPDLADRMGAAGRKRVKEKFSTEA 387 (392)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcCHHH
Confidence 444433 35677888887765 456776654
No 37
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.77 E-value=0.1 Score=52.47 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=76.7
Q ss_pred ceEEEeeccCC----hhHHHHHHHHHhc--CCCceEecCCCc-chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEE
Q 018084 194 NKLAFFAGAVN----SPVREKLLQVWRN--DSEIYAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPV 266 (361)
Q Consensus 194 ~~l~~F~G~~~----~~~R~~L~~~~~~--~~~~~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPV 266 (361)
+.-+.+.|... ...+..|.++.++ -++.+...|..+ .+..+.|+.|..++.|.-......-++|||++||.||
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvI 352 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPL 352 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEE
Confidence 45677777632 1223334333322 233455556554 3788899999999988766666788999999999666
Q ss_pred EEecceecCCCCCCC---CCcEEEEEcCCChhhHHHHHhC---CCHHHHHHHHHHHHhhhccceecc
Q 018084 267 IIANHYDLPFADILN---WKSFSIVVATLDIPLLKKILKG---ISSEEYLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 267 ii~d~~~lPF~~~id---w~~fsv~v~e~~v~~l~~~L~~---i~~~~i~~mr~~l~~~~~~f~~~~ 327 (361)
. ++. --|.++++. =.+-.+.+. +..++.+.+.. .+++....|+++.+++.++|.|+.
T Consensus 353 a-~~~-ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 415 (419)
T cd03806 353 A-HAS-GGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEE 415 (419)
T ss_pred E-EcC-CCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHH
Confidence 4 442 135556553 223333332 44443333322 356666667777777777776653
No 38
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.75 E-value=0.1 Score=49.67 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=65.8
Q ss_pred ecCCCcc-hHHhhhcCccEEEeecC--CCCCchhHHHHHhcCceEEEEecceecCCCCCC-CCCcEEEEEcCCChhhHHH
Q 018084 224 HSGRLKT-PYADGLLGSKFCLHVKG--FEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NWKSFSIVVATLDIPLLKK 299 (361)
Q Consensus 224 ~~g~~~~-~y~~~l~~S~FCL~p~G--~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~i-dw~~fsv~v~e~~v~~l~~ 299 (361)
..|..+. +..+.++.+..+++|.- ......-++|||.+|| |||.++.-..+ +.+ +.....+.++..+..++.+
T Consensus 248 ~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~ 324 (357)
T cd03795 248 FLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAE 324 (357)
T ss_pred EcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHH
Confidence 3444332 57788889999998852 2234567999999986 77777633221 222 2356677788888877666
Q ss_pred HHhCC--CHHHHHHHHHHHHhh-hccceec
Q 018084 300 ILKGI--SSEEYLLLQNNVLKV-RKHFQWH 326 (361)
Q Consensus 300 ~L~~i--~~~~i~~mr~~l~~~-~~~f~~~ 326 (361)
.+..+ .+++..+|.++.++. .++|.|+
T Consensus 325 ~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 325 AIRRLLEDPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHhcchH
Confidence 66554 577888898888764 4565554
No 39
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.69 E-value=0.083 Score=51.32 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=65.6
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc-eecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 307 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~-~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~ 307 (361)
+..+.++.+..++.|.-......-+.|||.+|| |||.+|- ... .+.+.=.+..+.++..+..++.+.|..+ .++
T Consensus 271 ~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~--~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 271 DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP--SEIIEDGENGYLVPKGDIEALAEAIIELLNDPK 347 (372)
T ss_pred CHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc--HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHH
Confidence 566788999999998765556788999999999 7777652 221 2333334566777877877666655544 567
Q ss_pred HHHHHHHHHHhhhccceec
Q 018084 308 EYLLLQNNVLKVRKHFQWH 326 (361)
Q Consensus 308 ~i~~mr~~l~~~~~~f~~~ 326 (361)
.+.+|+++.++..+.|.|.
T Consensus 348 ~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 348 LLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 8889998888776776554
No 40
>PRK14098 glycogen synthase; Provisional
Probab=95.69 E-value=0.078 Score=54.52 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=62.1
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCC-CC---CcEEEEEcCCChhhHHHHHhCC--
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NW---KSFSIVVATLDIPLLKKILKGI-- 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~i-dw---~~fsv~v~e~~v~~l~~~L~~i-- 304 (361)
...+.++.|.+++.|.-..+...-..|||++||+||+...+- ++ +.+ |+ ..-.+.++..+...+.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l~--d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-IV--ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-Cc--eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 456788999999999877777888999999999998765421 11 111 21 3446677888877666555431
Q ss_pred ---CHHHHHHHHHHHHhhhccceeccCC
Q 018084 305 ---SSEEYLLLQNNVLKVRKHFQWHVFP 329 (361)
Q Consensus 305 ---~~~~i~~mr~~l~~~~~~f~~~~~~ 329 (361)
.++++.+|+++. +.+.|.|+...
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~fsw~~~a 476 (489)
T PRK14098 451 LYHDEERWEELVLEA--MERDFSWKNSA 476 (489)
T ss_pred HHcCHHHHHHHHHHH--hcCCCChHHHH
Confidence 456666666543 34566666433
No 41
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.56 E-value=0.033 Score=54.05 Aligned_cols=87 Identities=26% Similarity=0.343 Sum_probs=64.7
Q ss_pred hHHhhhcCccEEEeecCCC-----------CCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHH
Q 018084 231 PYADGLLGSKFCLHVKGFE-----------VNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKK 299 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~-----------~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~ 299 (361)
+..+.|+. .|+|++.+++ .....++++|++|+ |||+++.-.++ +++.=....+.++ ++.++.+
T Consensus 219 el~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~-PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el~~ 292 (333)
T PRK09814 219 ELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL-PVIVWSKAAIA--DFIVENGLGFVVD--SLEELPE 292 (333)
T ss_pred HHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC-CEEECCCccHH--HHHHhCCceEEeC--CHHHHHH
Confidence 45555655 8999887661 12345888999997 99998764333 4454456777776 6778999
Q ss_pred HHhCCCHHHHHHHHHHHHhhhccc
Q 018084 300 ILKGISSEEYLLLQNNVLKVRKHF 323 (361)
Q Consensus 300 ~L~~i~~~~i~~mr~~l~~~~~~f 323 (361)
.|.+++++++.+|+++.+++.+.+
T Consensus 293 ~l~~~~~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 293 IIDNITEEEYQEMVENVKKISKLL 316 (333)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887765
No 42
>PRK14099 glycogen synthase; Provisional
Probab=95.43 E-value=0.17 Score=52.01 Aligned_cols=94 Identities=22% Similarity=0.282 Sum_probs=63.0
Q ss_pred hHHhhh-cCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCC-CCCCC--------cEEEEEcCCChhhHHHH
Q 018084 231 PYADGL-LGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-ILNWK--------SFSIVVATLDIPLLKKI 300 (361)
Q Consensus 231 ~y~~~l-~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~-~idw~--------~fsv~v~e~~v~~l~~~ 300 (361)
+....+ +.|.+.+.|.-..+...-..|||++||+||+ ++-=-+ .+ ++|.+ .-.+.++..+...|.+.
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl--~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGL--ADTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCc--cceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 445555 4688888898778888899999999999988 442111 12 23442 35677888888776666
Q ss_pred HhC----C-CHHHHHHHHHHHHhhhccceeccCC
Q 018084 301 LKG----I-SSEEYLLLQNNVLKVRKHFQWHVFP 329 (361)
Q Consensus 301 L~~----i-~~~~i~~mr~~l~~~~~~f~~~~~~ 329 (361)
|.. + .++...+|+++.. .+.|.|+...
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a 469 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWRNPA 469 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChHHHH
Confidence 543 2 4677788887754 4567776543
No 43
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.36 E-value=0.16 Score=51.77 Aligned_cols=91 Identities=19% Similarity=0.320 Sum_probs=60.2
Q ss_pred HHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCC-CCCC-----cEEEEEcCCChhhHHHHHhCC-
Q 018084 232 YADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADI-LNWK-----SFSIVVATLDIPLLKKILKGI- 304 (361)
Q Consensus 232 y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~-idw~-----~fsv~v~e~~v~~l~~~L~~i- 304 (361)
....++.|.+++.|.=..+...-..|||.+||+||+-..+ - ..+. .|.. .-.+.++..+..+|.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g-G--~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG-G--LADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC-C--ccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4567899999999987777888999999999988764322 1 1222 2331 456778888887766655543
Q ss_pred ----CHHHHHHHHHHHHhhhccceecc
Q 018084 305 ----SSEEYLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 305 ----~~~~i~~mr~~l~~~~~~f~~~~ 327 (361)
.++...+|.++.. .+.|.|+.
T Consensus 427 ~~~~~~~~~~~~~~~~~--~~~fsw~~ 451 (466)
T PRK00654 427 ELYRQPPLWRALQRQAM--AQDFSWDK 451 (466)
T ss_pred HHhcCHHHHHHHHHHHh--ccCCChHH
Confidence 3455666666543 35665554
No 44
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.12 E-value=0.2 Score=47.86 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=59.7
Q ss_pred eEecCCCc-chHHhhhcCccEEEeecCC-CCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCC-hhhHH
Q 018084 222 YAHSGRLK-TPYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLD-IPLLK 298 (361)
Q Consensus 222 ~~~~g~~~-~~y~~~l~~S~FCL~p~G~-~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~-v~~l~ 298 (361)
+...|..+ .+..+.+..+..++.|.-. .....-++|||.+|| |||.++.- +..+++.-. ...++..+ +.+..
T Consensus 250 V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i 324 (363)
T cd04955 250 IIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLL 324 (363)
T ss_pred EEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHH
Confidence 33445433 2567788888888887655 445677999999999 78877643 233444332 33345444 44333
Q ss_pred HHHhCCCHHHHHHHHHHHHhh-hccceecc
Q 018084 299 KILKGISSEEYLLLQNNVLKV-RKHFQWHV 327 (361)
Q Consensus 299 ~~L~~i~~~~i~~mr~~l~~~-~~~f~~~~ 327 (361)
..|-+ .++.+.+|.++.++. .+.|.|+.
T Consensus 325 ~~l~~-~~~~~~~~~~~~~~~~~~~fs~~~ 353 (363)
T cd04955 325 EELEA-DPEEVSAMAKAARERIREKYTWEK 353 (363)
T ss_pred HHHHh-CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33333 346677787776653 34565553
No 45
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.10 E-value=0.044 Score=52.43 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=63.4
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 308 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~ 308 (361)
+..+.|+.|.+++.|......+.-++|||.+|| |||.++. -+..+.+.=.+..+.++..+..++.+.|..+ .++.
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~ 333 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE 333 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 466789999999999877777889999999999 5776663 2334444434566777777776655555443 4666
Q ss_pred HHHHHHHHHhh-hcccee
Q 018084 309 YLLLQNNVLKV-RKHFQW 325 (361)
Q Consensus 309 i~~mr~~l~~~-~~~f~~ 325 (361)
..+|.++.+.. .+.|.|
T Consensus 334 ~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 334 REELGEAARELAENEFDS 351 (365)
T ss_pred HHHHHHHHHHHHHHhcCH
Confidence 78888877653 344433
No 46
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.97 E-value=0.18 Score=50.43 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=71.2
Q ss_pred ceEEEeeccCChhHHHHHHHHHhcC--CCceEecCCC-cchHHhhhcCccEEEeec----CCCCCchhHHHHHhcCceEE
Q 018084 194 NKLAFFAGAVNSPVREKLLQVWRND--SEIYAHSGRL-KTPYADGLLGSKFCLHVK----GFEVNTARIADSLYYGCVPV 266 (361)
Q Consensus 194 ~~l~~F~G~~~~~~R~~L~~~~~~~--~~~~~~~g~~-~~~y~~~l~~S~FCL~p~----G~~~~s~Rl~eai~~GCIPV 266 (361)
++.+.+.|. |..+..|.+..+.. ++.++..|.. ..++.+.|+.|..+++|. |.+ ...-++|||++|+ ||
T Consensus 269 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-PV 344 (415)
T cd03816 269 KLLCIITGK--GPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLD-LPMKVVDMFGCGL-PV 344 (415)
T ss_pred CEEEEEEec--CccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccC-CcHHHHHHHHcCC-CE
Confidence 366677774 34455555444322 2333344543 357888999999988642 222 3567999999999 99
Q ss_pred EEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC-----CHHHHHHHHHHHHhhh
Q 018084 267 IIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI-----SSEEYLLLQNNVLKVR 320 (361)
Q Consensus 267 ii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i-----~~~~i~~mr~~l~~~~ 320 (361)
|.++.-. ..++|.=..-.+.++ +..+|-+.|..+ ++++..+|.++.++..
T Consensus 345 I~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 345 CALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred EEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9987532 224443233344443 555554444333 2788889988877654
No 47
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.85 E-value=0.064 Score=41.56 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=47.1
Q ss_pred EEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEc-CCChhhHHHHHhCCCHHHHHHHHHHHHh-h
Q 018084 242 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVA-TLDIPLLKKILKGISSEEYLLLQNNVLK-V 319 (361)
Q Consensus 242 CL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~-e~~v~~l~~~L~~i~~~~i~~mr~~l~~-~ 319 (361)
||.|.-.+..+.|++|++.+||. ||..+. ..+.+.++..+-.+.+. .+++.+....|.+ .+++..+|.++.++ +
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~-vi~~~~--~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTP-VISDDS--PGLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERV 77 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCe-EEECCh--HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 44554334457899999999995 444433 22223355665566665 3344433333333 78888888888764 4
Q ss_pred hccceec
Q 018084 320 RKHFQWH 326 (361)
Q Consensus 320 ~~~f~~~ 326 (361)
..++.|.
T Consensus 78 ~~~~t~~ 84 (92)
T PF13524_consen 78 LKRHTWE 84 (92)
T ss_pred HHhCCHH
Confidence 5465544
No 48
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.69 E-value=0.29 Score=46.29 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=49.6
Q ss_pred eEecCCCcc-hHHhhhcCccEEEeecCC-CCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHH
Q 018084 222 YAHSGRLKT-PYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKK 299 (361)
Q Consensus 222 ~~~~g~~~~-~y~~~l~~S~FCL~p~G~-~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~ 299 (361)
+...|..+. +..+.++.+.+++.|.-. ......++|||++|| |||.+|.-.. .++++=..-.+.++. +.++.+
T Consensus 226 v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~--~e~i~~~~~g~l~~~--~~~l~~ 300 (335)
T cd03802 226 IEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAV--PEVVEDGVTGFLVDS--VEELAA 300 (335)
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCc--hhheeCCCcEEEeCC--HHHHHH
Confidence 444454332 567889999999998753 345678999999998 9999986433 344433223334443 555665
Q ss_pred HHhCC
Q 018084 300 ILKGI 304 (361)
Q Consensus 300 ~L~~i 304 (361)
.|+.+
T Consensus 301 ~l~~l 305 (335)
T cd03802 301 AVARA 305 (335)
T ss_pred HHHHH
Confidence 55544
No 49
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.60 E-value=0.24 Score=50.50 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=63.4
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCC------CcEEEEEcCCChhhHHHHHhCC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNW------KSFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw------~~fsv~v~e~~v~~l~~~L~~i 304 (361)
+..+.|..+..++.|.-......-++|||++|| |||.+|.-. ..+++.= ....+.++..+..++.+.+..+
T Consensus 363 ~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g~--~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~l 439 (475)
T cd03813 363 NVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVGS--CRELIEGADDEALGPAGEVVPPADPEALARAILRL 439 (475)
T ss_pred cHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCCC--hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHH
Confidence 566778889988888654445678999999999 888886421 2222221 3467888888887766665554
Q ss_pred --CHHHHHHHHHHHHh-hhccceec
Q 018084 305 --SSEEYLLLQNNVLK-VRKHFQWH 326 (361)
Q Consensus 305 --~~~~i~~mr~~l~~-~~~~f~~~ 326 (361)
+++...+|.++.++ +.+.|.|+
T Consensus 440 l~~~~~~~~~~~~a~~~v~~~~s~~ 464 (475)
T cd03813 440 LKDPELRRAMGEAGRKRVERYYTLE 464 (475)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 57778888887765 44454443
No 50
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=94.55 E-value=0.36 Score=47.14 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=59.9
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCC-h-hhHHHHHhCCCHH
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLD-I-PLLKKILKGISSE 307 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~-v-~~l~~~L~~i~~~ 307 (361)
....+.++.+..++.|........-++|||++| +|||.++.-.++ ++|.-....+.++..+ + ..|...|. +++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 356678889999988876666678999999999 599998854333 3343333334444322 2 12344443 467
Q ss_pred HHHHHHHHHHh-hhccceecc
Q 018084 308 EYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 308 ~i~~mr~~l~~-~~~~f~~~~ 327 (361)
...+|.++.++ +...|.|+.
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 340 LRRKMGANAREHVRENFLITR 360 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHHH
Confidence 77888888776 456776654
No 51
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.54 E-value=0.26 Score=49.89 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=58.9
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCC-CCCC-----cEEEEEcCCChhhHHHHHhCC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADI-LNWK-----SFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~-idw~-----~fsv~v~e~~v~~l~~~L~~i 304 (361)
...+.++.+.+.+.|.-..+...-.+|||++||.||.-..+ - ..+. .|.. .-.+.++..+..++.+.|..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g-g--~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG-G--LADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC-C--ccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 44567889999999987777788899999999987653322 1 1222 2332 146677877777665555442
Q ss_pred -----CHHHHHHHHHHHHhhhccceecc
Q 018084 305 -----SSEEYLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 305 -----~~~~i~~mr~~l~~~~~~f~~~~ 327 (361)
.++...+|.++.. ...|.|+.
T Consensus 440 l~~~~~~~~~~~~~~~~~--~~~fsw~~ 465 (476)
T cd03791 440 LALYRDPEAWRKLQRNAM--AQDFSWDR 465 (476)
T ss_pred HHHHcCHHHHHHHHHHHh--ccCCChHH
Confidence 3566667766643 23455543
No 52
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=94.51 E-value=0.2 Score=49.57 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=59.9
Q ss_pred cCCCc-chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhC
Q 018084 225 SGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG 303 (361)
Q Consensus 225 ~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~ 303 (361)
.|..+ .+..+.++.+..++.|.-......-++|||.+|| |||.++.-. ..+++.=.. .+.++. +..++.+.|..
T Consensus 255 ~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~~~~-~~~~~~-~~~~l~~~l~~ 329 (398)
T cd03796 255 LGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLPPDM-ILLAEP-DVESIVRKLEE 329 (398)
T ss_pred eCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhheeCCc-eeecCC-CHHHHHHHHHH
Confidence 45443 4778889999999888755455678999999999 677776433 234444232 344443 55544444332
Q ss_pred C---CHHHHHHHHHHHHhhhccceeccCCC
Q 018084 304 I---SSEEYLLLQNNVLKVRKHFQWHVFPS 330 (361)
Q Consensus 304 i---~~~~i~~mr~~l~~~~~~f~~~~~~~ 330 (361)
+ +.++...+++...++.++|.|+....
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 359 (398)
T cd03796 330 AISILRTGKHDPWSFHNRVKKMYSWEDVAK 359 (398)
T ss_pred HHhChhhhhhHHHHHHHHHHhhCCHHHHHH
Confidence 2 22232233444456778887765443
No 53
>PLN02949 transferase, transferring glycosyl groups
Probab=94.27 E-value=0.82 Score=46.72 Aligned_cols=104 Identities=15% Similarity=0.072 Sum_probs=62.1
Q ss_pred ceEecCCCc-chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCC-CCC-cEEEEEcCCChhhH
Q 018084 221 IYAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NWK-SFSIVVATLDIPLL 297 (361)
Q Consensus 221 ~~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~i-dw~-~fsv~v~e~~v~~l 297 (361)
.+...|..+ .+..+.|++|.+++.|.-+.....-+.|||++||+||.-..+ =|-++++ ++. .-.-++. .++.++
T Consensus 336 ~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~-~~~~~l 412 (463)
T PLN02949 336 DVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA-TTVEEY 412 (463)
T ss_pred cEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC-CCHHHH
Confidence 344445544 367778899998888776666678899999999876665432 1322332 221 1111112 255554
Q ss_pred HHHHhCC---CHHHHHHHHHHHHhhhccceecc
Q 018084 298 KKILKGI---SSEEYLLLQNNVLKVRKHFQWHV 327 (361)
Q Consensus 298 ~~~L~~i---~~~~i~~mr~~l~~~~~~f~~~~ 327 (361)
-+.+..+ ++++..+|+++.++....|.|+.
T Consensus 413 a~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~ 445 (463)
T PLN02949 413 ADAILEVLRMRETERLEIAAAARKRANRFSEQR 445 (463)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 4444332 56777889888876656675554
No 54
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=94.14 E-value=0.52 Score=47.02 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=56.7
Q ss_pred hHHhhhcCc--cEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcC-CChhhHHHHHhCC--C
Q 018084 231 PYADGLLGS--KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVAT-LDIPLLKKILKGI--S 305 (361)
Q Consensus 231 ~y~~~l~~S--~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e-~~v~~l~~~L~~i--~ 305 (361)
+..+.++.+ ...+.|........-++|||++|+ |||.+|---. .++|+=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg~--~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGGT--PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCCc--HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 455666553 333334444445678999999996 9999874332 344543434555554 4666555555543 5
Q ss_pred HHHHHHHHHHHHhh-hccceec
Q 018084 306 SEEYLLLQNNVLKV-RKHFQWH 326 (361)
Q Consensus 306 ~~~i~~mr~~l~~~-~~~f~~~ 326 (361)
+++..+|+++.++. .++|.++
T Consensus 378 ~~~~~~m~~~ar~~~~~~f~~~ 399 (407)
T cd04946 378 EEEYQTMREKAREKWEENFNAS 399 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCHH
Confidence 78889998887754 3555443
No 55
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=94.05 E-value=0.49 Score=45.15 Aligned_cols=71 Identities=10% Similarity=0.016 Sum_probs=47.2
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i 304 (361)
.+..+.++++.++++|.-....+.-++|||.+|| |||.++.-. ..+++.= ........+++.++.+.+..+
T Consensus 258 ~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 258 NDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred CCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 4677889999999999877667889999999999 566666422 2223222 344445555556655555444
No 56
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=93.92 E-value=0.22 Score=49.31 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=59.5
Q ss_pred hHHhhhcCccEEEeec--CCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CH
Q 018084 231 PYADGLLGSKFCLHVK--GFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SS 306 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~--G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~ 306 (361)
+..+.++.+..+++|. |.+ ...-++|||.+|| |||.++.- .+.+..=....+.++ .+..++.+.+..+ .+
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG-~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARG-IQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCC-cccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 5667888999999885 333 3457999999998 99998742 122211123355566 6666655555443 46
Q ss_pred HHHHHHHHHHHh-hhccceecc
Q 018084 307 EEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 307 ~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
+...+|.++.++ +.+.|.|+.
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWPR 385 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 677888888775 456777764
No 57
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=93.81 E-value=0.41 Score=46.64 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=49.6
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i 304 (361)
.+.+.++.+..++.|........-++|||++| +|||.+|...- ..++|.=..-.+.++..++.++.+.+..+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHH
Confidence 45566778888888877666678999999999 58888872222 22444334455667888888776666654
No 58
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=93.61 E-value=0.085 Score=43.41 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=43.7
Q ss_pred eEecCCCcchHHhhhcCccEEEeecC-CCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHH
Q 018084 222 YAHSGRLKTPYADGLLGSKFCLHVKG-FEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKI 300 (361)
Q Consensus 222 ~~~~g~~~~~y~~~l~~S~FCL~p~G-~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~ 300 (361)
+...|.. .++.+.++++..+++|.- +...+..++|++.+|| |||.++. ++.+.+.-....+.+ .++..++.+.
T Consensus 55 v~~~g~~-~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~ 128 (135)
T PF13692_consen 55 VRFHGFV-EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEELAEA 128 (135)
T ss_dssp EEEE-S--HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHH
T ss_pred EEEcCCH-HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHHHHH
Confidence 3344444 378899999999999874 2235689999999999 5666665 444444335666666 6676666665
Q ss_pred HhC
Q 018084 301 LKG 303 (361)
Q Consensus 301 L~~ 303 (361)
|..
T Consensus 129 i~~ 131 (135)
T PF13692_consen 129 IER 131 (135)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 59
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.60 E-value=0.2 Score=50.51 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=61.3
Q ss_pred HHhhhcCc----cEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--C
Q 018084 232 YADGLLGS----KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--S 305 (361)
Q Consensus 232 y~~~l~~S----~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~ 305 (361)
..+.++.+ ..++.|.-......-+.|||++|| |||.++.-- ..++++=.+-.+.++..|..++-+.+..+ +
T Consensus 330 ~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~gg--~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 330 VPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDGG--PRDIIANCRNGLLVDVLDLEAIASALEDALSD 406 (439)
T ss_pred HHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCCC--cHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC
Confidence 34445444 444556544455678999999999 999998532 33555445567788888887766655543 4
Q ss_pred HHHHHHHHHHHHh-hhccceecc
Q 018084 306 SEEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 306 ~~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
++...+|.++.++ +.++|.|+.
T Consensus 407 ~~~~~~~~~~a~~~~~~~fsw~~ 429 (439)
T TIGR02472 407 SSQWQLWSRNGIEGVRRHYSWDA 429 (439)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHH
Confidence 6667777777654 667777765
No 60
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.52 E-value=0.51 Score=46.61 Aligned_cols=143 Identities=18% Similarity=0.134 Sum_probs=86.5
Q ss_pred cCCcccCCccccCccCCCC-----CCCCCCC--CCCCceEEEeeccC-ChhHHHHHHHHHhcCCCceEecCCCc------
Q 018084 164 ISGHIAHKDVSLPQIWPRQ-----EDPPKLG--SSKRNKLAFFAGAV-NSPVREKLLQVWRNDSEIYAHSGRLK------ 229 (361)
Q Consensus 164 ~~~frp~~Dv~iP~~~p~~-----~~~~~~~--~~~R~~l~~F~G~~-~~~~R~~L~~~~~~~~~~~~~~g~~~------ 229 (361)
..+||-+.|+..|+-+-.. ...+..+ ..+++.++.+.... ...-|..+.+.+... -.+-+.|.|.
T Consensus 160 T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~-l~iD~YG~c~~~~~~~ 238 (372)
T KOG2619|consen 160 TMTYRRDSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIPRSARLDYYKELMKH-LEIDSYGECLRKNANR 238 (372)
T ss_pred eEEEeccCCCCCccceEeecccCceecccccccccccceeeeeccccCcchHHHHHHHHHHhh-CceeeccccccccccC
Confidence 3467777888877532111 0111111 34455566666553 345677666666544 2233345442
Q ss_pred ---chHHhhhcCccEEEeecC---CCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcC-CChhhHHHHHh
Q 018084 230 ---TPYADGLLGSKFCLHVKG---FEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVAT-LDIPLLKKILK 302 (361)
Q Consensus 230 ---~~y~~~l~~S~FCL~p~G---~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e-~~v~~l~~~L~ 302 (361)
....+.+.+-||-|+-.. ...-+..|+.|+.+|.|||+++......| ++ .+.-|.|+. ..+.+|...|+
T Consensus 239 ~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~ylk 314 (372)
T KOG2619|consen 239 DPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAYLK 314 (372)
T ss_pred CCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHHHH
Confidence 256678889999997542 22357899999999999999998655444 34 555555554 45668888888
Q ss_pred CCC--HHHHHH
Q 018084 303 GIS--SEEYLL 311 (361)
Q Consensus 303 ~i~--~~~i~~ 311 (361)
.+. ++.+.+
T Consensus 315 ~L~~n~~~Y~~ 325 (372)
T KOG2619|consen 315 KLDKNPAAYLS 325 (372)
T ss_pred HhhcCHHHHHH
Confidence 884 444444
No 61
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=93.25 E-value=0.85 Score=47.09 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=57.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc-eecCCCCCCCCCcEEEEEcC----CC----hhhHHHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDLPFADILNWKSFSIVVAT----LD----IPLLKKIL 301 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~-~~lPF~~~idw~~fsv~v~e----~~----v~~l~~~L 301 (361)
+..+.++.+.-++.|.=......-+.|||++|| |||.+|- +-. .++|.=..-.+.++. .+ +.+|-+.+
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHH
Confidence 455677778777777655556788999999998 7887762 222 233432333445542 22 33333332
Q ss_pred hC-CCHHHHHHHHHHHHhhhccceec
Q 018084 302 KG-ISSEEYLLLQNNVLKVRKHFQWH 326 (361)
Q Consensus 302 ~~-i~~~~i~~mr~~l~~~~~~f~~~ 326 (361)
.. +.+++..+|.++..+..+.|.|.
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhcCHH
Confidence 22 24667889988888877776554
No 62
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.34 E-value=1 Score=46.97 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=46.2
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLL 297 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l 297 (361)
+..+.|+.+..++.|.-......-++|||.+|| |||.++.--. .++|.=..-.+.++..+...+
T Consensus 465 Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 465 DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhhH
Confidence 566778899998888766667889999999999 9999885322 244443455666777765443
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=91.82 E-value=0.33 Score=47.48 Aligned_cols=40 Identities=20% Similarity=0.083 Sum_probs=34.4
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 271 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~ 271 (361)
+..+.++.|.+.+.|.-......-+.|||++|| |||.++-
T Consensus 216 dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 216 YIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred HHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 566888999999998777777888999999999 9998865
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=91.40 E-value=0.47 Score=46.26 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=32.4
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 271 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~ 271 (361)
+..+.++.+..++.|.-......-++|||++|| |||.+|.
T Consensus 202 ~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~ 241 (331)
T PHA01630 202 DIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEK 241 (331)
T ss_pred HHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCC
Confidence 667789999999998766555677999999999 6777763
No 65
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=91.12 E-value=1 Score=50.28 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=61.2
Q ss_pred EEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHHHHHHHHHHHh
Q 018084 241 FCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVLK 318 (361)
Q Consensus 241 FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~i~~mr~~l~~ 318 (361)
.++.|.=..+...-+.|||++|+ |||.++.- ...++|.-..-.+.++..+...|-+.|..+ .++...+|.++.++
T Consensus 574 VFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 574 VFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred eeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 55556555666788999999996 99999843 333555545667788988887766666554 56778889888876
Q ss_pred hhccceeccCC
Q 018084 319 VRKHFQWHVFP 329 (361)
Q Consensus 319 ~~~~f~~~~~~ 329 (361)
..+.|.|....
T Consensus 651 ~v~~FSWe~ia 661 (1050)
T TIGR02468 651 NIHLFSWPEHC 661 (1050)
T ss_pred HHHHCCHHHHH
Confidence 66677776543
No 66
>PLN02939 transferase, transferring glycosyl groups
Probab=89.61 E-value=1.8 Score=47.74 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=61.4
Q ss_pred hhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCC--------cEEEEEcCCChhhHHHHHhC--
Q 018084 234 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWK--------SFSIVVATLDIPLLKKILKG-- 303 (361)
Q Consensus 234 ~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~--------~fsv~v~e~~v~~l~~~L~~-- 303 (361)
..++.|.++++|.=+.+...-..|||++||+||+...+= ++ +-+.|++ .-.+.++..+...+...|..
T Consensus 852 ~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL 929 (977)
T PLN02939 852 SIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAF 929 (977)
T ss_pred HHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHH
Confidence 578899999999878888899999999999998754321 11 1122332 23556777777665544432
Q ss_pred --C--CHHHHHHHHHHHHhhhccceeccCCC
Q 018084 304 --I--SSEEYLLLQNNVLKVRKHFQWHVFPS 330 (361)
Q Consensus 304 --i--~~~~i~~mr~~l~~~~~~f~~~~~~~ 330 (361)
+ .++.+.+|+++. +...|.|.....
T Consensus 930 ~~~~~dpe~~~~L~~~a--m~~dFSWe~~A~ 958 (977)
T PLN02939 930 NYYKRKPEVWKQLVQKD--MNIDFSWDSSAS 958 (977)
T ss_pred HHhccCHHHHHHHHHHH--HHhcCCHHHHHH
Confidence 2 477788887753 346677765443
No 67
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=89.52 E-value=0.38 Score=50.22 Aligned_cols=100 Identities=14% Similarity=0.242 Sum_probs=64.9
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecC--CCCCC-CCCcEEEEEcC-------CChhhHHH
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP--FADIL-NWKSFSIVVAT-------LDIPLLKK 299 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lP--F~~~i-dw~~fsv~v~e-------~~v~~l~~ 299 (361)
..|.+.++.+.-++.|.-+.++..-..|||++|+ |||.++.--++ -.+++ +-....+.|.. +.+.+|.+
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~-PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGI-PSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcCC-CEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 3799999999999999988888899999999995 99999864331 01233 33345666653 22344444
Q ss_pred HHhCC---CHHHHHHHHHHHHhhhccceeccCCC
Q 018084 300 ILKGI---SSEEYLLLQNNVLKVRKHFQWHVFPS 330 (361)
Q Consensus 300 ~L~~i---~~~~i~~mr~~l~~~~~~f~~~~~~~ 330 (361)
.|..+ +..+....|....+....|.|+.-..
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~ 578 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGR 578 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44443 33333333333337788888886443
No 68
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=89.44 E-value=2 Score=37.40 Aligned_cols=76 Identities=18% Similarity=0.065 Sum_probs=46.0
Q ss_pred ceEEEeeccCChh-HHHHHHHHHhcCCCceEecCCC--cchHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEec
Q 018084 194 NKLAFFAGAVNSP-VREKLLQVWRNDSEIYAHSGRL--KTPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 270 (361)
Q Consensus 194 ~~l~~F~G~~~~~-~R~~L~~~~~~~~~~~~~~g~~--~~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d 270 (361)
+.-+.+.|..... ..+.+..... ..+.+...|.. ...+...++.|..+++|......+..++|||.+|| |||.++
T Consensus 135 ~~~~~i~G~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~ 212 (229)
T cd01635 135 DLKLVIAGDGPEREYLEELLAALL-LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATD 212 (229)
T ss_pred CeEEEEEeCCCChHHHHHHHHhcC-CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcC
Confidence 5667777764432 2222111121 12233344442 23555556669999999987778899999999987 556665
Q ss_pred c
Q 018084 271 H 271 (361)
Q Consensus 271 ~ 271 (361)
.
T Consensus 213 ~ 213 (229)
T cd01635 213 V 213 (229)
T ss_pred C
Confidence 4
No 69
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=88.97 E-value=1.6 Score=42.61 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=57.3
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc-----eecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC-
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-----YDLPFADILNWKSFSIVVATLDIPLLKKILKGI- 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~-----~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i- 304 (361)
+..+.+.++++.+.-.=+.......+|+|++|.|||.=..+ ++.|+++ +-.=++.+++..-...+|+-+
T Consensus 349 ~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G-----~~tGFla~t~~EYaE~iLkIv~ 423 (465)
T KOG1387|consen 349 KLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDG-----ETTGFLAPTDEEYAEAILKIVK 423 (465)
T ss_pred HHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCC-----ccceeecCChHHHHHHHHHHHH
Confidence 67788999999998666666678999999999999876542 4454432 222344455444444444433
Q ss_pred -CHHHHHHHHHHHHhhhccc
Q 018084 305 -SSEEYLLLQNNVLKVRKHF 323 (361)
Q Consensus 305 -~~~~i~~mr~~l~~~~~~f 323 (361)
+.++...||++-+.--.+|
T Consensus 424 ~~~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 424 LNYDERNMMRRNARKSLARF 443 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 5566778888776544443
No 70
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=88.97 E-value=5.7 Score=39.15 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=50.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCC------CCCCcEEEEEcCCChhhHHHHHhCC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADI------LNWKSFSIVVATLDIPLLKKILKGI 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~------idw~~fsv~v~e~~v~~l~~~L~~i 304 (361)
+..+.|+.|...+.+.|. .-+.|||.+|| |||+.+. .|-+++ ++ ....+.+ .+...|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 677889999998887762 24899999998 7888763 233332 22 3444443 4544444444333
Q ss_pred --C-HHHHHHHHHHHHhh
Q 018084 305 --S-SEEYLLLQNNVLKV 319 (361)
Q Consensus 305 --~-~~~i~~mr~~l~~~ 319 (361)
. ++...+|+++.++.
T Consensus 345 l~~~~~~~~~m~~~~~~~ 362 (382)
T PLN02605 345 FGDKSDELEAMSENALKL 362 (382)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 2 67778888776543
No 71
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=88.80 E-value=5.3 Score=38.90 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=66.5
Q ss_pred EEeeccCChhHHHHHHHHHhcCCCceEecCCCcc-hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc-eec
Q 018084 197 AFFAGAVNSPVREKLLQVWRNDSEIYAHSGRLKT-PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDL 274 (361)
Q Consensus 197 ~~F~G~~~~~~R~~L~~~~~~~~~~~~~~g~~~~-~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~-~~l 274 (361)
+.|.|..+..++..+.+.+...+. +...|..+. ++...|+.+.+++.+.|. -+.||+.+|| |||.... -..
T Consensus 233 ~vi~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~~~~~ 305 (365)
T TIGR00236 233 IVYPVHLNPVVREPLHKHLGDSKR-VHLIEPLEYLDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRDTTER 305 (365)
T ss_pred EEEECCCChHHHHHHHHHhCCCCC-EEEECCCChHHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCCCCCC
Confidence 444443334455555544432222 334444332 778889999998877642 2799999997 7887532 222
Q ss_pred CCCCCCCCCcEEEEEcCCChhhHHHHHhCC--CHHHHHHHHHHHHhhhccceeccCCCCccHHHHHHHHH
Q 018084 275 PFADILNWKSFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVLKVRKHFQWHVFPSDYDAFYMVMYDL 342 (361)
Q Consensus 275 PF~~~idw~~fsv~v~e~~v~~l~~~L~~i--~~~~i~~mr~~l~~~~~~f~~~~~~~~~Daf~~~~~~l 342 (361)
| +.+. ....+.++ .+..+|.+.|+.+ +++...+|.++ . .+.+..+|...++..|
T Consensus 306 ~--e~~~-~g~~~lv~-~d~~~i~~ai~~ll~~~~~~~~~~~~----~------~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 306 P--ETVE-AGTNKLVG-TDKENITKAAKRLLTDPDEYKKMSNA----S------NPYGDGEASERIVEEL 361 (365)
T ss_pred h--HHHh-cCceEEeC-CCHHHHHHHHHHHHhChHHHHHhhhc----C------CCCcCchHHHHHHHHH
Confidence 2 3444 34445554 4555554444432 33344444332 1 2234567777777444
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=87.33 E-value=4.4 Score=39.67 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=46.9
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCC-----CCCCCcEEEEEcCCChhhHHHHHhCC-
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-----ILNWKSFSIVVATLDIPLLKKILKGI- 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~-----~idw~~fsv~v~e~~v~~l~~~L~~i- 304 (361)
+..+.|+.|...+...| ..-+.||+.+|+ |||+.+.. |-++ .+.-..+.+.+ .+..+|.+.+..+
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~--~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll 336 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPV--PGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALL 336 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCC--CCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHH
Confidence 56678888887665333 345889999998 68876532 1111 11112344433 4445554444433
Q ss_pred -CHHHHHHHHHHHHhh
Q 018084 305 -SSEEYLLLQNNVLKV 319 (361)
Q Consensus 305 -~~~~i~~mr~~l~~~ 319 (361)
.++...+|.++.+++
T Consensus 337 ~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 337 QDDMKLLQMKEAMKSL 352 (380)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 577788888877654
No 73
>PLN02316 synthase/transferase
Probab=87.17 E-value=4.7 Score=45.20 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=58.5
Q ss_pred hhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCC------------cEEEEEcCCChhhHHHHH
Q 018084 234 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWK------------SFSIVVATLDIPLLKKIL 301 (361)
Q Consensus 234 ~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~------------~fsv~v~e~~v~~l~~~L 301 (361)
..++.|.+.|+|.=..+...-..|||++||+||+-..+ -+| +-+.|++ .-.+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 57889999999988888889999999999999995432 111 1123442 346677887776544433
Q ss_pred hC-CC--HHHHHHHHHHHHh-hhccceeccCCC
Q 018084 302 KG-IS--SEEYLLLQNNVLK-VRKHFQWHVFPS 330 (361)
Q Consensus 302 ~~-i~--~~~i~~mr~~l~~-~~~~f~~~~~~~ 330 (361)
.. +. .+.-..|++..++ +.+.|.|+....
T Consensus 993 ~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~ 1025 (1036)
T PLN02316 993 NRAISAWYDGRDWFNSLCKRVMEQDWSWNRPAL 1025 (1036)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 22 21 1222223333332 356787776543
No 74
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=86.27 E-value=1.8 Score=47.10 Aligned_cols=88 Identities=7% Similarity=0.168 Sum_probs=61.1
Q ss_pred cEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCC------CHHHHHHHH
Q 018084 240 KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI------SSEEYLLLQ 313 (361)
Q Consensus 240 ~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i------~~~~i~~mr 313 (361)
..+++|.=+.+...-+.|||++|| |||.++.=-+ .++|.=..-.+.|+..+...+-+.|..+ .++...+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456777777778899999999999 5666653222 2334335667778888887666555432 677888888
Q ss_pred HHHH-hhhccceeccCCC
Q 018084 314 NNVL-KVRKHFQWHVFPS 330 (361)
Q Consensus 314 ~~l~-~~~~~f~~~~~~~ 330 (361)
++.+ ++.++|.|.....
T Consensus 722 ~~a~~rV~~~FSW~~~A~ 739 (784)
T TIGR02470 722 QGGLQRIYEKYTWKIYSE 739 (784)
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 8854 5788999987653
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=84.54 E-value=2 Score=41.12 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=52.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCC-----CCCCCCcEEEEEcCCC--hhhHHHHHhC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFA-----DILNWKSFSIVVATLD--IPLLKKILKG 303 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~-----~~idw~~fsv~v~e~~--v~~l~~~L~~ 303 (361)
++.+.|..+..++.+.| +.-++|||.+|+ |||+.+.-.-+-+ +.+.-....+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 67889999999998765 246899999997 7777632100000 1233355566676654 5555544443
Q ss_pred C--CHHHHHHHHHHHHh
Q 018084 304 I--SSEEYLLLQNNVLK 318 (361)
Q Consensus 304 i--~~~~i~~mr~~l~~ 318 (361)
+ +++...+|.++.++
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 2 56777778777644
No 76
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=84.06 E-value=4.6 Score=40.05 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=52.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCC-----CCcEEEEEcCCChhhHHHHHhCC-
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILN-----WKSFSIVVATLDIPLLKKILKGI- 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~id-----w~~fsv~v~e~~v~~l~~~L~~i- 304 (361)
+..+.|+.|.+++..+| ..-+.||+.+|+ |||+.+.. |-++..+ =..+++.+. +..++.+.|..+
T Consensus 266 ~~~~~~~~aDl~I~k~g----g~tl~EA~a~G~-PvI~~~~~--pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~ll 336 (391)
T PRK13608 266 HMNEWMASSQLMITKPG----GITISEGLARCI-PMIFLNPA--PGQELENALYFEEKGFGKIAD--TPEEAIKIVASLT 336 (391)
T ss_pred hHHHHHHhhhEEEeCCc----hHHHHHHHHhCC-CEEECCCC--CCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHHh
Confidence 67788999999988544 235899999997 88887642 3333221 123444332 444444443333
Q ss_pred -CHHHHHHHHHHHHhhhcc
Q 018084 305 -SSEEYLLLQNNVLKVRKH 322 (361)
Q Consensus 305 -~~~~i~~mr~~l~~~~~~ 322 (361)
.++.+.+|+++.++..+.
T Consensus 337 ~~~~~~~~m~~~~~~~~~~ 355 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKIK 355 (391)
T ss_pred cCHHHHHHHHHHHHHhcCC
Confidence 578888999988766543
No 77
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=84.04 E-value=1.4 Score=43.31 Aligned_cols=66 Identities=11% Similarity=0.172 Sum_probs=41.7
Q ss_pred hHHhhhcCccEEEeecCCC-----CCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhC
Q 018084 231 PYADGLLGSKFCLHVKGFE-----VNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG 303 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~-----~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~ 303 (361)
+..+.++.+..|+.|--.. .....++|+|++|+ |||.++ +.++.....-.+.+ ..+..++.+.|+.
T Consensus 266 ~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 266 ELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 6778899999999985322 22467999999998 787654 23443333333333 4456555555544
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.87 E-value=8.9 Score=41.33 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=55.4
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCCh------hhHHHHHhCC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDI------PLLKKILKGI 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v------~~l~~~L~~i 304 (361)
+..+.|..+...+.|.-......-++|||.+|| |||.++.-- ..++|.=..-.+.++..+. ..|.++|...
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 566778888887777655566789999999997 888887432 2244433445666776553 2344444433
Q ss_pred CHHHHHHHHHHHHh-hhccceecc
Q 018084 305 SSEEYLLLQNNVLK-VRKHFQWHV 327 (361)
Q Consensus 305 ~~~~i~~mr~~l~~-~~~~f~~~~ 327 (361)
. .-.+|+++.++ +.+.|.|+.
T Consensus 661 ~--~~~~l~~~ar~~a~~~FS~~~ 682 (694)
T PRK15179 661 A--ADPGIARKAADWASARFSLNQ 682 (694)
T ss_pred h--ccHHHHHHHHHHHHHhCCHHH
Confidence 2 12345555543 445665543
No 79
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=82.84 E-value=5 Score=39.99 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=50.4
Q ss_pred hHHhhhcCccEEEeecCC-CCCchhHHHHHhcCceEEEEecceecCCCCCCC---CCcEEEEEcCCChhhHHHHHhCC--
Q 018084 231 PYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADILN---WKSFSIVVATLDIPLLKKILKGI-- 304 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~-~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~id---w~~fsv~v~e~~v~~l~~~L~~i-- 304 (361)
+..+.++.|..|+++... .....-++||+.+|| |||.+++.. -+.++.+ -..+.+ +..|..+|-+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 456777888887775432 123445899999998 888876421 1222211 123333 344555555544433
Q ss_pred CHHHHHHHHHHHHhhhc
Q 018084 305 SSEEYLLLQNNVLKVRK 321 (361)
Q Consensus 305 ~~~~i~~mr~~l~~~~~ 321 (361)
+++...+|.++.++...
T Consensus 388 ~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 388 DPDARQAYGEAGVAFLK 404 (425)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 47777888877765543
No 80
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=81.77 E-value=2 Score=34.20 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 53 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 53 ~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
|...++-+|.+ ...|.+.+| .|++|++||+++|
T Consensus 9 C~~N~~Dse~i-~~~l~~~G~~~~~~~e~AD~iii 42 (98)
T PF00919_consen 9 CQMNQYDSERI-ASILQAAGYEIVDDPEEADVIII 42 (98)
T ss_pred CcccHHHHHHH-HHHHHhcCCeeecccccCCEEEE
Confidence 55566666654 344445444 7999999999998
No 81
>PLN00142 sucrose synthase
Probab=80.60 E-value=3.9 Score=44.67 Aligned_cols=87 Identities=7% Similarity=0.127 Sum_probs=59.0
Q ss_pred cEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHh----C--CCHHHHHHHH
Q 018084 240 KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK----G--ISSEEYLLLQ 313 (361)
Q Consensus 240 ~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~----~--i~~~~i~~mr 313 (361)
..+++|.-+.+...-+.|||++|| |||.++.--++ ++|.=..-.+.|+..+...+-+.|. . -+++...+|.
T Consensus 668 DVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~~--EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg 744 (815)
T PLN00142 668 GAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGPA--EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKIS 744 (815)
T ss_pred CEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCHH--HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445667656667788999999998 78887743222 3444456677788888776544432 2 1577788888
Q ss_pred HHHH-hhhccceeccCC
Q 018084 314 NNVL-KVRKHFQWHVFP 329 (361)
Q Consensus 314 ~~l~-~~~~~f~~~~~~ 329 (361)
++.+ ++.++|.|+...
T Consensus 745 ~~Ar~rv~e~FSWe~~A 761 (815)
T PLN00142 745 DAGLQRIYECYTWKIYA 761 (815)
T ss_pred HHHHHHHHHhCCHHHHH
Confidence 8754 567889887654
No 82
>PRK10125 putative glycosyl transferase; Provisional
Probab=77.64 E-value=6.4 Score=39.38 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=49.4
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKI 300 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~ 300 (361)
+..+.++.+...+.|.-......-+.|||++|| |||.+|-=-. .++++= .-.+.++..|+..|-+.
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~--~Eiv~~-~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAA--REVLQK-SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCCh--HHhEeC-CcEEEECCCCHHHHHhc
Confidence 466778888888888777777788999999997 8998875333 244542 35788899998877763
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=74.36 E-value=13 Score=36.45 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=48.1
Q ss_pred ceEEEeeccCChhHHHHHHHHHhcC--CCceEecCCC-cchHHhhhcCccEEEeecCC---CCCchhHHHHHhcCceEEE
Q 018084 194 NKLAFFAGAVNSPVREKLLQVWRND--SEIYAHSGRL-KTPYADGLLGSKFCLHVKGF---EVNTARIADSLYYGCVPVI 267 (361)
Q Consensus 194 ~~l~~F~G~~~~~~R~~L~~~~~~~--~~~~~~~g~~-~~~y~~~l~~S~FCL~p~G~---~~~s~Rl~eai~~GCIPVi 267 (361)
++-+.+.|. |+.|..|.+..+.. ++..+..|.. ..+..+.|+.+..|+.|... .....-++|||++|| |||
T Consensus 261 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~-PVV 337 (371)
T PLN02275 261 RLLFIITGK--GPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVC 337 (371)
T ss_pred CeEEEEEeC--CCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC-CEE
Confidence 466788884 55566665554422 3333333323 34888899999999875321 113467999999998 888
Q ss_pred Eecc
Q 018084 268 IANH 271 (361)
Q Consensus 268 i~d~ 271 (361)
.++.
T Consensus 338 a~~~ 341 (371)
T PLN02275 338 AVSY 341 (371)
T ss_pred EecC
Confidence 8763
No 84
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=72.66 E-value=30 Score=32.52 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=81.2
Q ss_pred CCCCCCceEEEeeccCChh-HHHHHHHHHhcCCCce---Ee--c--CCCc---------chHHhhhcCccEEEeecCCCC
Q 018084 188 LGSSKRNKLAFFAGAVNSP-VREKLLQVWRNDSEIY---AH--S--GRLK---------TPYADGLLGSKFCLHVKGFEV 250 (361)
Q Consensus 188 ~~~~~R~~l~~F~G~~~~~-~R~~L~~~~~~~~~~~---~~--~--g~~~---------~~y~~~l~~S~FCL~p~G~~~ 250 (361)
.+-..|.-.++|+|+..+. .|+.|++...+.++.+ +. . +.|+ ..-.+...+.||=|...|.+
T Consensus 78 ~pW~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~- 156 (256)
T smart00672 78 TKWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVA- 156 (256)
T ss_pred CCccccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCcc-
Confidence 4556788899999997766 8999998776654321 11 1 1111 01234456789999999986
Q ss_pred CchhHHHHHhcCceEEEEecceecCCCC-CCCCCcEEEEEcC--CC--hhhHHHHHhCCCHHHHHHHHHHHHhh
Q 018084 251 NTARIADSLYYGCVPVIIANHYDLPFAD-ILNWKSFSIVVAT--LD--IPLLKKILKGISSEEYLLLQNNVLKV 319 (361)
Q Consensus 251 ~s~Rl~eai~~GCIPVii~d~~~lPF~~-~idw~~fsv~v~e--~~--v~~l~~~L~~i~~~~i~~mr~~l~~~ 319 (361)
.|.||.--|.+|+|++.....+..=|.+ ..+|.-+. -|.. ++ +.+..+.+++ .+++..++-++.++.
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~ 228 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNE-HDKKAQEIGKRGSEF 228 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 6789999999999988887554322333 24666653 2322 23 6666666665 345555555555443
No 85
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.23 E-value=14 Score=35.22 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=52.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecce-------ecCCCCCCCCCcEEEEEcCC--ChhhHHHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY-------DLPFADILNWKSFSIVVATL--DIPLLKKIL 301 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~-------~lPF~~~idw~~fsv~v~e~--~v~~l~~~L 301 (361)
++.+.|..+...+++.|. .-+.|||.+|+ |||+.+.- ..+-+.+.+ ....+.++.. +..+|.+.|
T Consensus 245 ~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~i 318 (350)
T cd03785 245 DMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAAL 318 (350)
T ss_pred hHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHHH
Confidence 677888999999887662 34899999998 56654321 011122223 4566777765 666666655
Q ss_pred hCC--CHHHHHHHHHHHHh
Q 018084 302 KGI--SSEEYLLLQNNVLK 318 (361)
Q Consensus 302 ~~i--~~~~i~~mr~~l~~ 318 (361)
+.+ +++...+|+++.++
T Consensus 319 ~~ll~~~~~~~~~~~~~~~ 337 (350)
T cd03785 319 LELLSDPERLKAMAEAARS 337 (350)
T ss_pred HHHhcCHHHHHHHHHHHHh
Confidence 544 56777778877654
No 86
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=71.12 E-value=29 Score=31.36 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=32.7
Q ss_pred cCCCc-chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc
Q 018084 225 SGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 271 (361)
Q Consensus 225 ~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~ 271 (361)
.|..+ ....+.++.+...+.|.-......-+.||+.+| +|||.++.
T Consensus 262 ~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~ 308 (381)
T COG0438 262 LGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDV 308 (381)
T ss_pred ecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCC
Confidence 45444 456667787899999854322334499999999 99988865
No 87
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=71.04 E-value=5 Score=40.88 Aligned_cols=88 Identities=10% Similarity=-0.023 Sum_probs=59.5
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCce---EEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhC---
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCV---PVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG--- 303 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCI---PVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~--- 303 (361)
.+..+.++.|.-++.|.-......-..|||.+||= |||+++.--.+-. ..-++.|+..++.++-+.|..
T Consensus 352 ~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l~ 426 (460)
T cd03788 352 EELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRALT 426 (460)
T ss_pred HHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHHc
Confidence 47788889999888877555556778999999996 6999974322211 234678888887766655543
Q ss_pred CCHHHHHHHHHHHHhhhcc
Q 018084 304 ISSEEYLLLQNNVLKVRKH 322 (361)
Q Consensus 304 i~~~~i~~mr~~l~~~~~~ 322 (361)
.++++..+|.++.++....
T Consensus 427 ~~~~e~~~~~~~~~~~v~~ 445 (460)
T cd03788 427 MPLEERRERHRKLREYVRT 445 (460)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3667777766666554443
No 88
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=69.05 E-value=16 Score=35.27 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=51.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc-eec------CCCCCCCCCcEEEEEcCCC--hhhHHHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDL------PFADILNWKSFSIVVATLD--IPLLKKIL 301 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~-~~l------PF~~~idw~~fsv~v~e~~--v~~l~~~L 301 (361)
++.+.|..+..+++..| ..-++|||.+|+ |||+... ... .-+.+.+ ....+.++.++ ...|.+.+
T Consensus 245 ~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i 318 (357)
T PRK00726 245 DMAAAYAAADLVICRAG----ASTVAELAAAGL-PAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKL 318 (357)
T ss_pred hHHHHHHhCCEEEECCC----HHHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHH
Confidence 67788899999998765 245899999998 5555432 111 0111233 34567777766 44555554
Q ss_pred hCC--CHHHHHHHHHHHHhh
Q 018084 302 KGI--SSEEYLLLQNNVLKV 319 (361)
Q Consensus 302 ~~i--~~~~i~~mr~~l~~~ 319 (361)
+.+ .++...+|+++.++.
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 319 LELLSDPERLEAMAEAARAL 338 (357)
T ss_pred HHHHcCHHHHHHHHHHHHhc
Confidence 443 366677788875443
No 89
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=59.75 E-value=25 Score=35.92 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=56.0
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceE----EEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhC--
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVP----VIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG-- 303 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIP----Vii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~-- 303 (361)
.+..+.++.+.-|++|.-......-..|||++|+ | ||+++.--.+ +.+. -++.|+..+...+-+.|..
T Consensus 347 ~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~aL 420 (456)
T TIGR02400 347 EELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARAL 420 (456)
T ss_pred HHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHHH
Confidence 3778889999999987755445678999999997 8 8998743221 1232 3678888888776665533
Q ss_pred -CCHHHHHHHHHHHHh
Q 018084 304 -ISSEEYLLLQNNVLK 318 (361)
Q Consensus 304 -i~~~~i~~mr~~l~~ 318 (361)
.++++..++.+++++
T Consensus 421 ~~~~~er~~r~~~~~~ 436 (456)
T TIGR02400 421 TMPLEEREERHRAMMD 436 (456)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 366665555555443
No 90
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=58.97 E-value=25 Score=33.13 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=26.7
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEE
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVII 268 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii 268 (361)
+..+.|+.|..+++..|. -++|++.+| +|+|+
T Consensus 234 ~m~~lm~~aDl~Is~~G~-----T~~E~~a~g-~P~i~ 265 (279)
T TIGR03590 234 NMAELMNEADLAIGAAGS-----TSWERCCLG-LPSLA 265 (279)
T ss_pred HHHHHHHHCCEEEECCch-----HHHHHHHcC-CCEEE
Confidence 677899999999997662 299999999 67776
No 91
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=56.07 E-value=48 Score=33.19 Aligned_cols=129 Identities=16% Similarity=0.239 Sum_probs=76.6
Q ss_pred CCCCCCceEEEeeccCChh-HHHHHHHHHhcCCCce---Eec---C-----CCcchHHhhhcCccEEEeecCCCCCchhH
Q 018084 188 LGSSKRNKLAFFAGAVNSP-VREKLLQVWRNDSEIY---AHS---G-----RLKTPYADGLLGSKFCLHVKGFEVNTARI 255 (361)
Q Consensus 188 ~~~~~R~~l~~F~G~~~~~-~R~~L~~~~~~~~~~~---~~~---g-----~~~~~y~~~l~~S~FCL~p~G~~~~s~Rl 255 (361)
.+-..|.-.++|+|+.... .|..|++.-.+.++.. +.. + ..+..-.+...+.+|-+...|.+ +|.||
T Consensus 152 ~pW~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~-~S~Rl 230 (395)
T PF05686_consen 152 VPWEDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNA-WSGRL 230 (395)
T ss_pred CChhhcccceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCce-eehhH
Confidence 3456788889999996544 5998887654433211 110 0 00112244566788889999987 57899
Q ss_pred HHHHhcCceEEEEecceecCCCC-CCCCCcEEEEEcC-CChhhHHHHHhCC--CHHHHHHHHHHHHh
Q 018084 256 ADSLYYGCVPVIIANHYDLPFAD-ILNWKSFSIVVAT-LDIPLLKKILKGI--SSEEYLLLQNNVLK 318 (361)
Q Consensus 256 ~eai~~GCIPVii~d~~~lPF~~-~idw~~fsv~v~e-~~v~~l~~~L~~i--~~~~i~~mr~~l~~ 318 (361)
.--|.+|++.+.....+..=|.+ ..+|.-+. -|.. ++..+|.+.++=. .+++-.++-++..+
T Consensus 231 kylL~c~SvVl~~~~~~~e~f~~~L~P~vHYV-PV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~ 296 (395)
T PF05686_consen 231 KYLLACNSVVLKVKSPYYEFFYRALKPWVHYV-PVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQR 296 (395)
T ss_pred HHHHcCCceEEEeCCcHHHHHHhhhcccccEE-EeccccchhhHHHHhhhcccChHHHHHHHHHHHH
Confidence 99999999987776554322222 35677663 3444 3455555554332 24455555555443
No 92
>PLN02501 digalactosyldiacylglycerol synthase
Probab=55.69 E-value=41 Score=36.43 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=27.6
Q ss_pred hhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc
Q 018084 234 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 271 (361)
Q Consensus 234 ~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~ 271 (361)
+.++.+...+.|.-......-+.|||++|| |||.+|.
T Consensus 614 ~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl-PVVATd~ 650 (794)
T PLN02501 614 DSLHGYKVFINPSISDVLCTATAEALAMGK-FVVCADH 650 (794)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCC-CEEEecC
Confidence 466677766666555455688999999998 8888875
No 93
>PLN02846 digalactosyldiacylglycerol synthase
Probab=52.69 E-value=43 Score=34.34 Aligned_cols=38 Identities=26% Similarity=0.200 Sum_probs=28.1
Q ss_pred hhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecce
Q 018084 234 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 272 (361)
Q Consensus 234 ~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~ 272 (361)
+.++.+..++.|.-......-+.|||++|+ |||..|.-
T Consensus 296 ~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~-PVVa~~~~ 333 (462)
T PLN02846 296 PLFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANHP 333 (462)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCC-cEEEecCC
Confidence 466666766666655555688999999998 88888743
No 94
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=48.59 E-value=27 Score=33.90 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=47.2
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCC----CCCCcE------------E--EEEcCC
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADI----LNWKSF------------S--IVVATL 292 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~----idw~~f------------s--v~v~e~ 292 (361)
+..+.++.|..++++.|. -..||+.+|| |||+..+. -||... +....+ . +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 456677888888887653 3459999998 78877443 122210 111111 1 112333
Q ss_pred ChhhHHHHHhCC--CHHHHHHHHHHHHhhhcc
Q 018084 293 DIPLLKKILKGI--SSEEYLLLQNNVLKVRKH 322 (361)
Q Consensus 293 ~v~~l~~~L~~i--~~~~i~~mr~~l~~~~~~ 322 (361)
+..+|.+.+..+ +++...+|.++...+.+.
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQ 358 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 344444444433 577777888887666554
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=47.71 E-value=2.9e+02 Score=27.27 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=54.1
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCC-----------CCcEEEEEcCCCh--hhH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILN-----------WKSFSIVVATLDI--PLL 297 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~id-----------w~~fsv~v~e~~v--~~l 297 (361)
++.+.|+.|.-++|=+|.+ -+.|+...| +|+|+- .+|.. .| =...+..++++++ .+|
T Consensus 245 dm~~~~~~ADLvIsRaGa~----Ti~E~~a~g-~P~Ili---P~p~~--~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l 314 (357)
T COG0707 245 DMAALLAAADLVISRAGAL----TIAELLALG-VPAILV---PYPPG--ADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314 (357)
T ss_pred hHHHHHHhccEEEeCCccc----HHHHHHHhC-CCEEEe---CCCCC--ccchHHHHHHHHHhCCCEEEeccccCCHHHH
Confidence 6788899999999977753 266666654 798883 23322 11 1356888998884 356
Q ss_pred HHHHhCC--CHHHHHHHHHHHHhh
Q 018084 298 KKILKGI--SSEEYLLLQNNVLKV 319 (361)
Q Consensus 298 ~~~L~~i--~~~~i~~mr~~l~~~ 319 (361)
.+.|.++ +++++.+|.++.+.+
T Consensus 315 ~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 315 AELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6665554 379999999987655
No 96
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=40.80 E-value=1.1e+02 Score=33.66 Aligned_cols=83 Identities=10% Similarity=-0.002 Sum_probs=54.2
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceE----EEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHh---C
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVP----VIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK---G 303 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIP----Vii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~---~ 303 (361)
++...++.+.-|++|.=......-..|||++|+ | +|+++---.+ +++ ..-++.|+..++.++-+.|. .
T Consensus 368 el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL~ 442 (797)
T PLN03063 368 YLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEALN 442 (797)
T ss_pred HHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHHh
Confidence 677889999999998744444567999999998 5 8887632111 112 34588999888876555432 3
Q ss_pred CCHHHHHHHHHHHHh
Q 018084 304 ISSEEYLLLQNNVLK 318 (361)
Q Consensus 304 i~~~~i~~mr~~l~~ 318 (361)
+++++..++.+++.+
T Consensus 443 m~~~er~~r~~~~~~ 457 (797)
T PLN03063 443 MSDEERETRHRHNFQ 457 (797)
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555554444443
No 97
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=39.83 E-value=25 Score=31.51 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=28.0
Q ss_pred CccEEEeecCCCCCchhHHHHHhcCceEEEEec
Q 018084 238 GSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 270 (361)
Q Consensus 238 ~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d 270 (361)
.-+|||+..|.+..-...|||=..+.|||+-..
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~ts 52 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHTS 52 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEee
Confidence 568999998888777889999999999998653
No 98
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=39.67 E-value=39 Score=34.25 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred hhhCCCeEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 25 QMNRSFRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 25 ~~~~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
.|..+-|||+.-++ |.-.++-+|.+.- .|.+.+| .|.++++||+.+|
T Consensus 3 ~~~~~~~~~i~t~G--------------C~~N~~dse~~~~-~l~~~G~~~~~~~~~aD~ivi 50 (440)
T PRK14862 3 KMTAAPKIGFVSLG--------------CPKALVDSERILT-QLRAEGYEISPSYDGADLVIV 50 (440)
T ss_pred CCCCCCEEEEEEcC--------------CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 34445588888765 5566777766544 4555666 6888999999998
No 99
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.97 E-value=44 Score=33.95 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred eEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 31 RVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 31 kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
|||+.-++ |.-.++-+|.+.. .|.+.+| .|+++++||+++|
T Consensus 8 ~~~i~t~G--------------C~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADiiii 49 (448)
T PRK14333 8 SYWITTFG--------------CQMNKADSERMAG-ILEDMGYQWAEDELQADLVLY 49 (448)
T ss_pred EEEEEEcC--------------CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 78887665 5667777776544 4556666 7899999999998
No 100
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=34.92 E-value=1.4e+02 Score=30.97 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=57.9
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecc----eecCCCCCCCC----CcEEEEEcCCChhhHHHHHh
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH----YDLPFADILNW----KSFSIVVATLDIPLLKKILK 302 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~----~~lPF~~~idw----~~fsv~v~e~~v~~l~~~L~ 302 (361)
-+.+..+.|.+=|.|.=..|..---+.||+.|||||+-.-+ -+.++. .| ..-.+.+.+.+...+...|+
T Consensus 361 la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~---~~~~~~~gtGf~f~~~~~~~l~~al~ 437 (487)
T COG0297 361 LAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRN---EWLIQGVGTGFLFLQTNPDHLANALR 437 (487)
T ss_pred HHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCcc---chhccCceeEEEEecCCHHHHHHHHH
Confidence 45567788888888887778777788899999999988753 344443 24 23334444446555444443
Q ss_pred ------CCCHHHHHHHHHHHHhhhccceeccCCCCc
Q 018084 303 ------GISSEEYLLLQNNVLKVRKHFQWHVFPSDY 332 (361)
Q Consensus 303 ------~i~~~~i~~mr~~l~~~~~~f~~~~~~~~~ 332 (361)
..++.....+|++... ..|.|+.....+
T Consensus 438 rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y 471 (487)
T COG0297 438 RALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEY 471 (487)
T ss_pred HHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHH
Confidence 2233334444444322 466666554433
No 101
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.85 E-value=55 Score=33.27 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|...++-+|.+.. .|.+.+| .|+++++||+.+|
T Consensus 15 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~ADviii 49 (445)
T PRK14340 15 GCQMNQADSEIITA-LLQDEGYVPAASEEDADIVLL 49 (445)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36677777776554 4555666 6888999999998
No 102
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.33 E-value=58 Score=33.24 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=24.9
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|.-.++-+|.+.- .|...+| .|+++++||+.+|
T Consensus 29 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~AD~~ii 63 (459)
T PRK14338 29 GCQMNVSDSERLEA-ALQGVGYSPAERPEDADFIVL 63 (459)
T ss_pred CCCCCHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36667777776554 4555555 6899999999998
No 103
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=33.07 E-value=1.3e+02 Score=29.15 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=28.0
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEe
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIA 269 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~ 269 (361)
..|...|+.|...++ .+|+ ..-+.||+.+| -||.+-
T Consensus 220 nPy~~~La~ad~i~V-T~DS--vSMvsEA~~tG-~pV~v~ 255 (311)
T PF06258_consen 220 NPYLGFLAAADAIVV-TEDS--VSMVSEAAATG-KPVYVL 255 (311)
T ss_pred CcHHHHHHhCCEEEE-cCcc--HHHHHHHHHcC-CCEEEe
Confidence 368999988888777 4665 45799999999 588773
No 104
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.28 E-value=62 Score=32.75 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 53 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 53 ~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
|...++-+|.+.- .|.+.+| .|+++++||+.+|
T Consensus 11 C~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADv~ii 44 (439)
T PRK14328 11 CQMNEEDSEKLAG-MLKSMGYERTENREEADIIIF 44 (439)
T ss_pred CCCCHHHHHHHHH-HHHHCcCEECCCcCcCCEEEE
Confidence 6667777776544 4555565 6888999999998
No 105
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.98 E-value=66 Score=32.37 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=24.5
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|...++-+|.+.. .|...+| .|.++++||+.+|
T Consensus 10 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~AD~vii 44 (418)
T PRK14336 10 GCQMNQAESERLGR-LFELWGYSLADKAEDAELVLV 44 (418)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36667777776554 4444555 7889999999998
No 106
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.52 E-value=73 Score=32.26 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=24.3
Q ss_pred CCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 53 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 53 ~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
|.-.++-+|.+.- .|.+.+| .|+++++||+.+|
T Consensus 10 C~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADi~ii 43 (440)
T PRK14334 10 CQMNEYDTHLVES-ELVSLGAEIVDSVDEADFVLV 43 (440)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 6667777776544 5555666 6888999999998
No 107
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.01 E-value=73 Score=32.48 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=24.6
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|.-.++-+|.+.. .|.+.+| .|.+|++||+.+|
T Consensus 9 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~ADv~ii 43 (455)
T PRK14335 9 GCQMNVAESASMEQ-LLLARGWTKAVDAETCDVLII 43 (455)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36667777776544 4455555 6899999999998
No 108
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=28.53 E-value=42 Score=22.97 Aligned_cols=39 Identities=23% Similarity=0.513 Sum_probs=27.5
Q ss_pred cCccEEEeecCC-CCCchhHHHHHhcCceEEEEecceecCCCC
Q 018084 237 LGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFAD 278 (361)
Q Consensus 237 ~~S~FCL~p~G~-~~~s~Rl~eai~~GCIPVii~d~~~lPF~~ 278 (361)
-+|.||+.|--. +..++|-|-.-..||--.-+. .||.++
T Consensus 7 fqsrfcifpltfkssasprkfltnvtgccsatvt---rlplsn 46 (59)
T PF07038_consen 7 FQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVT---RLPLSN 46 (59)
T ss_pred EeeeeEEEEeeeccCCChHHHhhcccceeeeeEE---eccchh
Confidence 479999999765 345788888888899654442 466543
No 109
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=28.46 E-value=1.2e+02 Score=28.53 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=28.7
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEe
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIA 269 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~ 269 (361)
.++.+.|+.|..+++-.|++ -+.||+.+|+ |+|+-
T Consensus 242 ~~~~~~m~~ad~vIs~~G~~----t~~Ea~~~g~-P~l~i 276 (318)
T PF13528_consen 242 PDFAELMAAADLVISKGGYT----TISEALALGK-PALVI 276 (318)
T ss_pred HHHHHHHHhCCEEEECCCHH----HHHHHHHcCC-CEEEE
Confidence 37889999999999998885 3889999886 66653
No 110
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=28.37 E-value=6.8e+02 Score=26.61 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=73.8
Q ss_pred CceEEEeeccCChh------HHHHHHHHHhc--CCC-ceEecCCCcchHHhhhcCccEEEe-ecC-CCCCchhHHHHHhc
Q 018084 193 RNKLAFFAGAVNSP------VREKLLQVWRN--DSE-IYAHSGRLKTPYADGLLGSKFCLH-VKG-FEVNTARIADSLYY 261 (361)
Q Consensus 193 R~~l~~F~G~~~~~------~R~~L~~~~~~--~~~-~~~~~g~~~~~y~~~l~~S~FCL~-p~G-~~~~s~Rl~eai~~ 261 (361)
++.-+.|+|+.+.. +-+.+.+.-++ .++ +++..+-...-.....+-|.+-|. |.- ..++...-.-|+..
T Consensus 423 ~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~n 502 (601)
T TIGR02094 423 RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMN 502 (601)
T ss_pred CCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHc
Confidence 67778899985432 33333333322 122 223333222234456678889998 764 78887888889999
Q ss_pred CceEEEEecceecCCCCCCCCCcEEEE----------EcCCChhhHHHHHh-CC------------CHHHHHHHHHHHHh
Q 018084 262 GCVPVIIANHYDLPFADILNWKSFSIV----------VATLDIPLLKKILK-GI------------SSEEYLLLQNNVLK 318 (361)
Q Consensus 262 GCIPVii~d~~~lPF~~~idw~~fsv~----------v~e~~v~~l~~~L~-~i------------~~~~i~~mr~~l~~ 318 (361)
|++=.=+-|++.-.+.+- -+-|++- .++.+...|.+.|+ +| |++-+..|++.++.
T Consensus 503 GgL~~sv~DG~~~E~~~~--~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~ 580 (601)
T TIGR02094 503 GVLNLSILDGWWGEGYDG--DNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIAT 580 (601)
T ss_pred CCceeecccCcccccCCC--CcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhc
Confidence 998888878664443221 2333333 11344445555552 23 22234455555555
Q ss_pred hhccceeccC
Q 018084 319 VRKHFQWHVF 328 (361)
Q Consensus 319 ~~~~f~~~~~ 328 (361)
..+.|.|++.
T Consensus 581 ~~~~fsw~r~ 590 (601)
T TIGR02094 581 IAPRFSTNRM 590 (601)
T ss_pred cCCCCCHHHH
Confidence 5566766653
No 111
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.22 E-value=79 Score=31.96 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=24.3
Q ss_pred CCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 53 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 53 ~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
|.-+++-+|.+.- .|.+.+| .|+++++||+.+|
T Consensus 10 C~~N~~ds~~~~~-~l~~~G~~~~~~~~~aDviii 43 (437)
T PRK14331 10 CQMNFNDSEKIKG-ILQTLGYEPADDWEEADLILV 43 (437)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 6667777776544 4555665 6888999999998
No 112
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=27.36 E-value=1.2e+02 Score=32.83 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=44.0
Q ss_pred chHHhhhcCccEEEeecCCCCCchhHHHHHhcCc---eEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHh
Q 018084 230 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGC---VPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK 302 (361)
Q Consensus 230 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GC---IPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~ 302 (361)
.+....++.+.-|+.|.=......-..|||++|| =++|++...--. .++.. ++.|+..|..++-+.+.
T Consensus 353 ~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~-~~l~~----~llv~P~d~~~la~ai~ 423 (726)
T PRK14501 353 EELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA-AELAE----ALLVNPNDIEGIAAAIK 423 (726)
T ss_pred HHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchh-HHhCc----CeEECCCCHHHHHHHHH
Confidence 3788899999999987644444567899999987 235665532100 01121 67888888876665553
No 113
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.86 E-value=83 Score=31.82 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 53 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 53 ~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
|...++-+|.+.. .|...+| .|+++++||+.+|
T Consensus 13 C~~N~~ds~~~~~-~l~~~g~~~~~~~~~aDvvii 46 (444)
T PRK14325 13 CQMNEYDSSKMAD-LLGAEGYELTDDPEEADLILL 46 (444)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcCCCCEEEE
Confidence 6667777776554 4455555 7888999999998
No 114
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.72 E-value=97 Score=31.57 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=30.6
Q ss_pred CCCeEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 28 RSFRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 28 ~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+..|||+.-++ |..+++-+|.+. ..|.+.+| .|.++++||+.+|
T Consensus 9 ~~~~~~i~t~G--------------C~~N~~dse~~~-~~l~~~G~~~~~~~~~ADvvii 53 (449)
T PRK14332 9 KLGKVYIETYG--------------CQMNEYDSGIVS-SLMRDAEYSTSNDPENSDIIFL 53 (449)
T ss_pred CCCEEEEEecC--------------CCCCHHHHHHHH-HHHHHCcCEECCCcccCCEEEE
Confidence 44566766554 566677777655 45555666 6789999999998
No 115
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=26.40 E-value=67 Score=31.22 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=32.2
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEeccee
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYD 273 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~ 273 (361)
+|...+.+.|-|+|= |+.... -+.|+|.-|.|||++++...
T Consensus 125 ~yp~af~n~kvvvv~-GwDy~~-~~~e~~k~~~~p~~~~n~~~ 165 (337)
T COG2247 125 DYPNAFKNVKVVVVY-GWDYAD-ALMELMKEGIVPVILKNTSI 165 (337)
T ss_pred hchhhhcCeEEEEEe-ccccHH-HHHHHHhcCcceeEeccccc
Confidence 677778888888874 554332 89999999999999998753
No 116
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=25.50 E-value=1.3e+02 Score=25.15 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=31.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecce
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 272 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~ 272 (361)
+|...-.+-+.+||.+|.-........|..+|..-|||.++-
T Consensus 40 d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~ 81 (143)
T cd02133 40 DFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNV 81 (143)
T ss_pred ccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecC
Confidence 454444578899998886433456778899999999997654
No 117
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=24.19 E-value=1e+02 Score=31.23 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=23.9
Q ss_pred CCCCCCchhHHHHHHHHhcC-Cc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKS-HF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S-~~-~T~dP~eAdlF~v 86 (361)
+|.-.++-+|.+.- .|... +| .|.++++||+.+|
T Consensus 8 GC~~N~~dse~~~~-~l~~~~G~~~~~~~~~aDv~ii 43 (438)
T TIGR01574 8 GCQMNVRDSEHMAA-LLTAKEGYALTEDAKEADVLLI 43 (438)
T ss_pred CCCCcHHHHHHHHH-HHHhcCCcEECCCcccCCEEEE
Confidence 36667777776544 44444 55 6888999999998
No 118
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=23.63 E-value=1e+02 Score=30.92 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|...++-+|.+. ..|.+.+| .|+++++||+.+|
T Consensus 8 GC~~N~~ds~~~~-~~l~~~g~~~~~~~~~aD~v~i 42 (429)
T TIGR00089 8 GCQMNEADSEIMA-GLLKEAGYEVTDDPEEADVIII 42 (429)
T ss_pred CCCCcHHHHHHHH-HHHHHCcCEECCCcccCCEEEE
Confidence 3667777776544 44555666 6888999999998
No 119
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=87 Score=31.89 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=31.6
Q ss_pred hCCCHHHHHHHHHHHHhhhccceeccCC-----C-CccHHHHHHHHHHHH
Q 018084 302 KGISSEEYLLLQNNVLKVRKHFQWHVFP-----S-DYDAFYMVMYDLWLR 345 (361)
Q Consensus 302 ~~i~~~~i~~mr~~l~~~~~~f~~~~~~-----~-~~Daf~~~~~~l~~r 345 (361)
+..+.+++.++-+.++...+.+...+.. + +-..|+.|+ ++..+
T Consensus 275 R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl-~lv~e 323 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETL-DLVEE 323 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHH-HHHHH
Confidence 4557888888888898888888877753 3 345799998 55554
No 120
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=23.35 E-value=1.1e+02 Score=30.90 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=24.5
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|.-.++-+|.+. ..|...+| .|.++++||+.+|
T Consensus 8 GC~~N~~ds~~~~-~~l~~~G~~~~~~~~~ADviii 42 (420)
T TIGR01578 8 GCTLNNGDSEIMK-NSLAAYGHELVNNAEEADLAIL 42 (420)
T ss_pred CCCCcHHHHHHHH-HHHHHCCCEECCCcccCCEEEE
Confidence 3666777776544 45555666 6888999999998
No 121
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.10 E-value=1.1e+02 Score=31.23 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.7
Q ss_pred CeEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 30 FRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 30 ~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
-|||+.-++ |.-.++-+|.+ ...|...+| .|.++++||+.+|
T Consensus 24 ~~~~i~t~G--------------C~~N~~dse~~-~~~l~~~G~~~~~~~~~ADivii 66 (467)
T PRK14329 24 KKLFIESYG--------------CQMNFADSEIV-ASILQMAGYNTTENLEEADLVLV 66 (467)
T ss_pred CEEEEEecC--------------CCCcHHHHHHH-HHHHHHCcCEECCCcccCCEEEE
Confidence 357777665 66677777654 345555666 6788999999998
No 122
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=22.40 E-value=2e+02 Score=27.29 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=41.5
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCC-----CCCCCcEEEEEcCCChhhHHHHHh
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-----ILNWKSFSIVVATLDIPLLKKILK 302 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~-----~idw~~fsv~v~e~~v~~l~~~L~ 302 (361)
+..+.|..+..+++-.|.+ -+.||+.+|. |+|+-..... ++. .+.-...++.+.+.++..+..+|.
T Consensus 240 ~~~~~l~~ad~vI~~~G~~----t~~Ea~~~g~-P~l~ip~~~~-~eQ~~na~~l~~~g~~~~l~~~~~~~~~~~~~ 310 (321)
T TIGR00661 240 NFKELIKNAELVITHGGFS----LISEALSLGK-PLIVIPDLGQ-FEQGNNAVKLEDLGCGIALEYKELRLLEAILD 310 (321)
T ss_pred HHHHHHHhCCEEEECCChH----HHHHHHHcCC-CEEEEcCCCc-ccHHHHHHHHHHCCCEEEcChhhHHHHHHHHh
Confidence 5788899999999988874 3889999985 7777432100 011 133445667777776633333333
No 123
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.16 E-value=1.3e+02 Score=31.22 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=30.8
Q ss_pred hhCCCeEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 26 MNRSFRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 26 ~~~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+.+.-||||--++ |.-+++-+|.+.- .|.+.+| .|+++++||+++|
T Consensus 10 ~~~~~~~~i~T~G--------------C~~N~~dse~~~~-~L~~~G~~~~~~~e~ADvvvi 56 (502)
T PRK14326 10 ARGARTYQVRTYG--------------CQMNVHDSERLAG-LLEAAGYVRAAEGQDADVVVF 56 (502)
T ss_pred CCCCCEEEEEecC--------------CCCcHHHHHHHHH-HHHHCCCEECCCcCCCCEEEE
Confidence 3344467777654 5566776665444 5555566 6788999999998
No 124
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.66 E-value=44 Score=32.41 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=61.2
Q ss_pred cCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHHhCCCHHHHHHHHHHH
Q 018084 246 KGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGISSEEYLLLQNNV 316 (361)
Q Consensus 246 ~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L~~i~~~~i~~mr~~l 316 (361)
.|-+...+.+++.+.---|+|=+|---.--|.|+++++++-|....+....|.+.=|+++++++.++....
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcC
Confidence 45666779999999988888888876678899999999999999999998888888999999998888754
No 125
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=21.43 E-value=2.2e+02 Score=22.49 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=27.9
Q ss_pred hhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecce
Q 018084 235 GLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 272 (361)
Q Consensus 235 ~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~ 272 (361)
.-.+-|.+||-+|..........|..+|..=|||.++-
T Consensus 43 ~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~ 80 (126)
T cd00538 43 ADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNG 80 (126)
T ss_pred CCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECC
Confidence 33467888888876433456788999999999997544
No 126
>PF15582 Imm40: Immunity protein 40
Probab=20.70 E-value=1.6e+02 Score=27.82 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=35.0
Q ss_pred hHHhhhcCccEEEeecCCCCCchhHHHHHhcCceEEEEecceecCCCCCCCCCcEEEEEcCCChhhHHHHH-hCCCHHHH
Q 018084 231 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKIL-KGISSEEY 309 (361)
Q Consensus 231 ~y~~~l~~S~FCL~p~G~~~~s~Rl~eai~~GCIPVii~d~~~lPF~~~idw~~fsv~v~e~~v~~l~~~L-~~i~~~~i 309 (361)
...+++++||||+|---.+... ..-||+|+ ..++..|..+.-.-+..++ ++|-+.+-
T Consensus 261 ~~Y~LF~DSTF~F~NiNG~~~~-------------------~~Im~~D~---~~Ysf~vs~~~s~~v~~Iyn~GIYDK~~ 318 (327)
T PF15582_consen 261 KMYDLFCDSTFCFCNINGTHTR-------------------FSIMHSDI---DNYSFDVSDNSSKIVRWIYNRGIYDKED 318 (327)
T ss_pred HHHHHhhhceEEEEEecCceee-------------------eeeeeccc---cceeeEEEecChHHHHHHHhcccccchh
Confidence 6678999999999954443332 23467754 3344444433323444555 34655555
Q ss_pred HHHHH
Q 018084 310 LLLQN 314 (361)
Q Consensus 310 ~~mr~ 314 (361)
.+|++
T Consensus 319 ~~~~~ 323 (327)
T PF15582_consen 319 RIRRF 323 (327)
T ss_pred hhhhh
Confidence 55543
No 127
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.42 E-value=1.5e+02 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|.-.++-+|.+. ..|.+.+| .|+++++||+.+|
T Consensus 75 GC~~N~~Dse~~~-~~L~~~Gy~~~~~~~~ADviii 109 (509)
T PRK14327 75 GCQMNEHDTEVMA-GIFEALGYEPTDDTEDADVILL 109 (509)
T ss_pred CCCccHHHHHHHH-HHHHHCcCEECCCcCCCCEEEE
Confidence 4666777666543 45555666 6888999999998
No 128
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.28 E-value=1.3e+02 Score=30.29 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-ccCCCCcccEEEE
Q 018084 52 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 86 (361)
Q Consensus 52 ~~~~~~y~~E~~~~~~L~~S~~-~T~dP~eAdlF~v 86 (361)
+|.-.++-+|.+ ...|.+.++ .|.++++||+.+|
T Consensus 8 GC~~N~~ds~~~-~~~l~~~g~~~~~~~~~aD~vii 42 (430)
T TIGR01125 8 GCPKNLVDSEVM-LGILREAGYEVTPNYEDADYVIV 42 (430)
T ss_pred CCCCcHHHHHHH-HHHHHHCcCEECCCcccCCEEEE
Confidence 355667766654 344555555 7889999999998
Done!