Query 018085
Match_columns 361
No_of_seqs 327 out of 1071
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 1.9E-53 6.5E-58 413.2 17.2 242 44-288 5-255 (306)
2 2o95_A 26S proteasome non-ATPa 100.0 8.9E-33 3.1E-37 249.6 18.7 170 58-252 5-179 (187)
3 4e0q_A COP9 signalosome comple 100.0 9.3E-30 3.2E-34 221.4 9.8 130 59-196 4-138 (141)
4 2znr_A AMSH-like protease; met 100.0 5.1E-29 1.8E-33 224.5 8.9 133 57-202 5-139 (178)
5 3rzv_A STAM-binding protein; u 99.9 8.3E-27 2.8E-31 215.1 11.2 131 59-202 40-172 (211)
6 4b4t_U RPN8, 26S proteasome re 99.9 3.8E-25 1.3E-29 217.1 21.8 198 60-283 5-206 (338)
7 2kks_A Uncharacterized protein 99.9 7.4E-23 2.5E-27 178.0 16.2 123 63-197 2-124 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 99.9 2.5E-23 8.4E-28 182.4 12.0 122 63-198 1-127 (153)
9 1oi0_A AF2198, hypothetical pr 99.8 1.2E-18 4.1E-23 147.5 9.5 108 63-196 4-111 (124)
10 2og4_A PRE-mRNA-splicing facto 99.2 1.8E-11 6.1E-16 114.9 9.2 127 61-202 38-170 (254)
11 2p8r_A PRP8, PRE-mRNA-splicing 99.2 5.4E-11 1.8E-15 112.8 9.5 125 61-202 39-173 (273)
12 3sbg_A PRE-mRNA-splicing facto 98.5 1.9E-07 6.4E-12 94.8 8.7 128 62-202 350-481 (565)
13 2qlc_A DNA repair protein RADC 62.6 59 0.002 26.8 9.8 84 66-162 7-91 (126)
14 2rh2_A Dihydrofolate reductase 30.1 18 0.0006 25.7 1.1 11 139-149 24-34 (62)
15 2q6k_A Chlorinase; complex wit 21.0 2.5E+02 0.0087 26.2 7.6 74 124-199 18-96 (283)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-53 Score=413.17 Aligned_cols=242 Identities=34% Similarity=0.516 Sum_probs=179.5
Q ss_pred hhHHHhcCCCCCCC---CCeeEEEECHHHHHHHHHHHhcCCCceeEEEeceee-cCCeEEEEEEEeCCCccCCccccccc
Q 018085 44 QTKFQQEKPWVNDP---HYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQA 119 (361)
Q Consensus 44 ~~~~~~~~pw~~~~---~~~~~V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~-~~~tl~Vtd~F~lP~~~te~rv~~~~ 119 (361)
|+.+...++|..++ +++++|+|+++||+||++||+++.|.||||+|+|.+ ++++++|+||||+|++++++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d 84 (306)
T 4b4t_V 5 QRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVD 84 (306)
T ss_dssp ------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCC
T ss_pred HHhhhccCCCCCCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCC
Confidence 34456677777755 479999999999999999999999999999999986 55689999999999999999987654
Q ss_pred ChHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccC
Q 018085 120 DAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE 199 (361)
Q Consensus 120 e~~eY~~~ml~~~r~v~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~ 199 (361)
.+|+.+|+++++++|+++++||||||||+++||||++||++|+.||.+.+++|+|||||.++. +|++.|+|||++|.
T Consensus 85 --~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~ 161 (306)
T 4b4t_V 85 --DVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDT 161 (306)
T ss_dssp --HHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHH
T ss_pred --HHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCc
Confidence 368999999999999999999999999999999999999999999999999999999999986 79999999999987
Q ss_pred CCCCCC----CCCCcccccChhhhhhhCC-ccceeEEeeEEEecChhHHHHHHHHhccccccccCCCcCccChHHHHHHH
Q 018085 200 GYKPPD----EPISEYQTIPLNKIEDFGV-HCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQI 274 (361)
Q Consensus 200 ~~~~~~----~~~~e~~~ip~~ki~d~g~-~~~~fyeLpV~i~~s~l~~~~L~~L~~~~w~~~Ls~s~~l~n~~~l~~~i 274 (361)
++.... ...+.+..+|..++++++. +++.||+|||+++++++++.+|..||+++|..+|+.+++..+.++..+++
T Consensus 162 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i 241 (306)
T 4b4t_V 162 GALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAAT 241 (306)
T ss_dssp HHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHH
T ss_pred cccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 653221 2234456678888888885 35779999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHhc
Q 018085 275 SDLAEKLEQAENQL 288 (361)
Q Consensus 275 ~dl~~~~~~~~~~~ 288 (361)
.++.+...++...+
T Consensus 242 ~~m~~~~~~y~k~v 255 (306)
T 4b4t_V 242 KSMVKIAEQYSKRI 255 (306)
T ss_dssp HHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777666554
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=8.9e-33 Score=249.60 Aligned_cols=170 Identities=19% Similarity=0.274 Sum_probs=142.5
Q ss_pred CCeeEEEECHHHHHHHHHHHhc----CCCceeEEEeceeecCCeEEEEEEEeCCCccCCccccc-ccChHHHHHHHHHHH
Q 018085 58 HYFKRVKISALALLKMVVHARS----GGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNA-QADAYEYMVDYSQTN 132 (361)
Q Consensus 58 ~~~~~V~Is~~vLlkIl~Ha~~----~~p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~-~~e~~eY~~~ml~~~ 132 (361)
.++++|+|+++|+++|++||.+ +.+.+|||+|||...+++++|+||||+|+.+++++.+. ..+ .+|+.+|++++
T Consensus 5 ~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d-~ey~~~m~~~~ 83 (187)
T 2o95_A 5 LAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLD-HDYLENMYGMF 83 (187)
T ss_dssp CSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEEC-HHHHHHHHHHH
T ss_pred CCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcC-HHHHHHHHHHH
Confidence 5678999999999999999865 48999999999999999999999999999876654221 122 36999999999
Q ss_pred HHhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCCCCCCCCCccc
Q 018085 133 KQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQ 212 (361)
Q Consensus 133 r~v~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~~~~~~~~e~~ 212 (361)
+++++++++||||||||++ |..|+.+|..||.+.+++|+||+||.++ .+.+.++|||+.+....++.
T Consensus 84 ~~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~--~~~l~i~ay~~~~~~~~~~~------- 150 (187)
T 2o95_A 84 KKVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPK--DLGLPTEAYISVEEVHDDGT------- 150 (187)
T ss_dssp HTTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTT--C-CCSEEEEEEEEECC-----------
T ss_pred HHhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCC--CCCcCeEEEEEechhcCCCC-------
Confidence 9999999999999999975 6788888888999999999999999875 24499999999986543211
Q ss_pred ccChhhhhhhCCccceeEEeeEEEecChhHHHHHHHHhcc
Q 018085 213 TIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNK 252 (361)
Q Consensus 213 ~ip~~ki~d~g~~~~~fyeLpV~i~~s~l~~~~L~~L~~~ 252 (361)
...++|.++|++|.++..|+..++.|...
T Consensus 151 -----------~~~~~F~~ip~~I~~~eaE~i~v~~l~~~ 179 (187)
T 2o95_A 151 -----------PTSKTFEHVTSEIGAEEAEEVGVEHLLRD 179 (187)
T ss_dssp -----------CCEEEEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred -----------cccCEEEEeeEEEecCcHHHHHHHHHHhc
Confidence 13579999999999999999999998644
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.96 E-value=9.3e-30 Score=221.41 Aligned_cols=130 Identities=18% Similarity=0.297 Sum_probs=108.1
Q ss_pred CeeEEEECHHHHHHHHHHHhc-----CCCceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHH
Q 018085 59 YFKRVKISALALLKMVVHARS-----GGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNK 133 (361)
Q Consensus 59 ~~~~V~Is~~vLlkIl~Ha~~-----~~p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r 133 (361)
...+|+|+|+||++|++||.+ +.+.+|+|+|||..++++++|+|||++|++++++++..+ .+|+.+|+++++
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d---~~y~~~m~~~~k 80 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVIN---KDYYNKKEQQYK 80 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEEC---HHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeec---HHHHHHHHHHHH
Confidence 346899999999999999965 357899999999999999999999999998877766443 489999999999
Q ss_pred HhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEE
Q 018085 134 QAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 196 (361)
Q Consensus 134 ~v~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl 196 (361)
++++++++||||||||+ ++..|+..|..|++..+.+|+|++||.++. .|++.++||+.
T Consensus 81 ~v~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~-~g~Lp~~ay~s 138 (141)
T 4e0q_A 81 QVFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLSRS-VDHLPLKLFES 138 (141)
T ss_dssp HHSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCC-CTTHHHHHHCC
T ss_pred HhCCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCccC-CCeEEEEEEEE
Confidence 99999999999999995 677888888889999999999999999864 67888998864
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.95 E-value=5.1e-29 Score=224.50 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=113.7
Q ss_pred CCCeeEEEECHHHHHHHHHHHhcCC--CceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHH
Q 018085 57 PHYFKRVKISALALLKMVVHARSGG--TIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQ 134 (361)
Q Consensus 57 ~~~~~~V~Is~~vLlkIl~Ha~~~~--p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~ 134 (361)
-.+++.|.|+..++.+|+.||+++. +.||||+|+|+..++.++|+++|++|+.++++++++..+. + + ++.++
T Consensus 5 ~~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~-e-~---~~~~~- 78 (178)
T 2znr_A 5 MEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVE-E-L---FNVQD- 78 (178)
T ss_dssp CCSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHH-H-H---HHHHH-
T ss_pred cCCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHH-H-H---HHHHH-
Confidence 3568899999999999999999864 4799999999998889999999999999888888764422 2 1 22232
Q ss_pred hCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018085 135 AGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (361)
Q Consensus 135 v~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~ 202 (361)
++++.+||||||||+++||||.+|+++|+.||.+.+++|+||+||.++ .++|||++|.++.
T Consensus 79 -~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~------~~~afrl~~~g~~ 139 (178)
T 2znr_A 79 -QHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK------DTGIFRLTNAGML 139 (178)
T ss_dssp -HHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT------EEEEEEECHHHHH
T ss_pred -hCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC------cceEEEEECCcEe
Confidence 467999999999999999999999999999999999999999999753 3899999997754
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.94 E-value=8.3e-27 Score=215.05 Aligned_cols=131 Identities=18% Similarity=0.286 Sum_probs=113.1
Q ss_pred CeeEEEECHHHHHHHHHHHhcC--CCceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhC
Q 018085 59 YFKRVKISALALLKMVVHARSG--GTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAG 136 (361)
Q Consensus 59 ~~~~V~Is~~vLlkIl~Ha~~~--~p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~ 136 (361)
-+++|.|+..++.+|+.||+.+ .+.||||+|+|+..+++++|+++|..|+.++++++++..+.. +.+++ +.
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e--~~~~~---~~-- 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEE--LFLIQ---DQ-- 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHH--HHHHH---HH--
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHH--HHHHH---hh--
Confidence 4789999999999999999986 458999999999998999999999999999888887654322 22222 11
Q ss_pred CCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018085 137 RLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (361)
Q Consensus 137 ~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~ 202 (361)
+++.+||||||||+++||||.+|+.+|..||.+.+++|+||+||.++ +++|||++|+|+.
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~------~lgaFrLtp~G~~ 172 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ------ETGFFKLTDHGLE 172 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT------EEEEEEECHHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC------eeeEEEeccchhh
Confidence 57999999999999999999999999999999999999999999752 6999999998864
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.8e-25 Score=217.14 Aligned_cols=198 Identities=20% Similarity=0.271 Sum_probs=148.4
Q ss_pred eeEEEECHHHHHHHHHHHhc---CCCceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhC
Q 018085 60 FKRVKISALALLKMVVHARS---GGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAG 136 (361)
Q Consensus 60 ~~~V~Is~~vLlkIl~Ha~~---~~p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~ 136 (361)
.++|.|+|+||++|++|+.+ +.+.+|+|.|||..++++++|+|||++|++.+++......-..+|+.+|++++++++
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 47899999999999999854 567799999999999999999999999997766544332223489999999999999
Q ss_pred CCCceEEEEecCCCCCCccCHHhHHHHHhhhhcC-CCeEEEEEcCCCCccCCeeeEEEEEEccCCCCCCCCCCCcccccC
Q 018085 137 RLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQ-EPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIP 215 (361)
Q Consensus 137 ~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~-~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~~~~~~~~e~~~ip 215 (361)
+++.+||||||+|. ++..|+..|..|++.. +..++|++|+... .|++.++||+..+.....+.
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~--~~~lpi~aY~s~~~~~~~~~---------- 148 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQ--GVGLPTDAYVAIEQVKDDGT---------- 148 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCC--SSSCSEEEEEEEEECSSCST----------
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCC--CCCcceEEEEeehhccCCCc----------
Confidence 99999999999985 5566777788888876 4678899998653 67899999998764322110
Q ss_pred hhhhhhhCCccceeEEeeEEEecChhHHHHHHHHhccccccccCCCcCccChHHHHHHHHHHHHHHHH
Q 018085 216 LNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQ 283 (361)
Q Consensus 216 ~~ki~d~g~~~~~fyeLpV~i~~s~l~~~~L~~L~~~~w~~~Ls~s~~l~n~~~l~~~i~dl~~~~~~ 283 (361)
.....|.+||+++.....++..++.|.......+ ...+..++......|..|..+++.
T Consensus 149 --------~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~~~~--~~~l~~~l~~~~~al~~L~~~l~~ 206 (338)
T 4b4t_U 149 --------STEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQA--AGGLSIRLTNQLKSLKGLQSKLKD 206 (338)
T ss_dssp --------TCEEEEEEECEEECSCHHHHHHHHHHHHHHSSCC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccEEEEeeeEeecCcHHHHHHHHHHhccccCc--ccccchhHHHHHHHHHHHHHHHHH
Confidence 1246899999999999999999999865432222 222334444444455555544443
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.90 E-value=7.4e-23 Score=178.02 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=100.0
Q ss_pred EEECHHHHHHHHHHHhcCCCceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhCCCCceE
Q 018085 63 VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAV 142 (361)
Q Consensus 63 V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~~~e~vV 142 (361)
|+|+..++.+|+.||+++.|.|+||+|+|+.++++..|+++|++|+..+... .+..++.+ +.++.+.++. +++.+|
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~-~f~~dp~~-~~~~~~~~~~--~g~~iv 77 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPE-HFSMDPRE-QLTAVKDMRK--NGWVML 77 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSS-SCCCCHHH-HHHHHHHHHH--HTCEEE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCc-eEEECHHH-HHHHHHHHHH--CCCEEE
Confidence 6899999999999999999999999999999888899999999997644322 24455555 4555666664 468999
Q ss_pred EEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEEc
Q 018085 143 GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY 197 (361)
Q Consensus 143 GWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~ 197 (361)
|||||||+.+|+||.+|+.++ ..++++++|+++.. .+..+++|||+.
T Consensus 78 G~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~---~~~~~~~af~~~ 124 (146)
T 2kks_A 78 GNFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAE---PQKPVCKSFLIK 124 (146)
T ss_dssp EEEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSC---SSSCEEEEEEEC
T ss_pred EEEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccC---CCceEEEEEEEe
Confidence 999999999999999999753 24788999999753 245789999984
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.89 E-value=2.5e-23 Score=182.37 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=98.0
Q ss_pred EEECHHHHHHHHHHHhcCCCceeEEEeceeec-CCeEEEEEEEeCCCc--c-CCcccccccChHHHHHHHHHHHHHhCCC
Q 018085 63 VKISALALLKMVVHARSGGTIEVMGLMQGKTD-GDAIIVMDAFALPVE--G-TETRVNAQADAYEYMVDYSQTNKQAGRL 138 (361)
Q Consensus 63 V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~~-~~tl~Vtd~F~lP~~--~-te~rv~~~~e~~eY~~~ml~~~r~v~~~ 138 (361)
++|++.++.+|+.||+++.|.|+||+|+|+.+ ++++.|+++||+|+. . +.+++.+ ++.+ +.++.+.+++ ++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~--dp~~-~~~~~~~~~~--~g 75 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYEL--TADD-YRAADAAAQE--QG 75 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSC--CCCS-HHHHHHHHHH--HT
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEE--CHHH-HHHHHHHHHH--CC
Confidence 36889999999999999999999999999997 788999999999986 2 2344444 3334 3445566655 46
Q ss_pred CceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCe-eeEEEEEEcc
Q 018085 139 ENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGK-VEIGAFRTYP 198 (361)
Q Consensus 139 e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk-~~ikAFRl~p 198 (361)
+.+||||||||+++||||.+|+..+ ..+++++||+++. .|+ ..++|||+..
T Consensus 76 ~~ivG~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~----~~~~~~~~af~~~~ 127 (153)
T 2kcq_A 76 LDVVGVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVR----DGAPEALTAWALAP 127 (153)
T ss_dssp CEEEEEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEE----TTEEEEEEEEEECT
T ss_pred CeEEEEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECC----CCCccEEEEEEEeC
Confidence 8999999999999999999998643 3578999999964 355 5799999953
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.76 E-value=1.2e-18 Score=147.46 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=80.0
Q ss_pred EEECHHHHHHHHHHHhcCCCceeEEEeceeecCCeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhCCCCceE
Q 018085 63 VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAV 142 (361)
Q Consensus 63 V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~~~~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~~~e~vV 142 (361)
|+|+..++.+|+.||+++.|.|+||+|+|+.. .|++.|++|+..++.. ..|...|. .+++.+|
T Consensus 4 v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~----~v~~~~~~p~~~~~~~-------~~f~~~~~------~~~~~iv 66 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVS-------AVIHLDML------PIGMKVF 66 (124)
T ss_dssp CEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC--------------------------CCCEEE
T ss_pred EEEcHHHHHHHHHHHHhcCCCeeEEEEecccC----EEEEEEECCCCCCCcC-------ceeeeeec------cCCCEEE
Confidence 78999999999999999999999999999863 7899999994433211 12322222 2679999
Q ss_pred EEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEEEEcCCCCccCCeeeEEEEEE
Q 018085 143 GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 196 (361)
Q Consensus 143 GWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl 196 (361)
|||||||+.+++||..|+.++. .++.++||+++.. +..++++|+.
T Consensus 67 G~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~----~~~~~~~f~~ 111 (124)
T 1oi0_A 67 GTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY----DENSWKCYNR 111 (124)
T ss_dssp EEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC----CTTCEEEEET
T ss_pred EEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccC----CCceEEEEec
Confidence 9999999999999999998643 3678999999643 2235677754
No 10
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.8e-11 Score=114.95 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=103.4
Q ss_pred eEEEECHHHHHHHHHHHhcCCCceeEEEeceeec---CCeEEEEEEEeCCCccCCcccccccCh--HHHHHHHHHHHHHh
Q 018085 61 KRVKISALALLKMVVHARSGGTIEVMGLMQGKTD---GDAIIVMDAFALPVEGTETRVNAQADA--YEYMVDYSQTNKQA 135 (361)
Q Consensus 61 ~~V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~~---~~tl~Vtd~F~lP~~~te~rv~~~~e~--~eY~~~ml~~~r~v 135 (361)
.++.|+...+-|.+..|.. ..++||+|.|... .+..+|+...-.|+.++.+.|+...+. .+|+.
T Consensus 38 ~t~vlPknLlkkFi~IAD~--~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~--------- 106 (254)
T 2og4_A 38 NVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD--------- 106 (254)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------
T ss_pred cEEEcCHHHHHHHHHHhhc--cceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------
Confidence 4789999999999988865 3689999999984 347889988878888887777654321 22211
Q ss_pred CCCCceEEEEecCCCCCCccCHHhHHHHHhhhh-cCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018085 136 GRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQ-FQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (361)
Q Consensus 136 ~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~-~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~ 202 (361)
-.++..+||-|+||.-.|++|..||.+|..||. +.+..|+|++.|. .|..+++||||++.||.
T Consensus 107 l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft----pgs~sl~af~LT~~G~~ 170 (254)
T 2og4_A 107 TEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST----PGSVSLSAYNLTDEGYQ 170 (254)
T ss_dssp CTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred hcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC----CCCceeEEEEcChhhhh
Confidence 257899999999999999999999999999998 4589999999974 68889999999998864
No 11
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.18 E-value=5.4e-11 Score=112.77 Aligned_cols=125 Identities=22% Similarity=0.296 Sum_probs=101.6
Q ss_pred eEEEECHHHHHHHHHHHhcCCCceeEEEeceeec---CCeEEEEEEEeCCCccCCcccccccCh--HHHHHHHHHHHHHh
Q 018085 61 KRVKISALALLKMVVHARSGGTIEVMGLMQGKTD---GDAIIVMDAFALPVEGTETRVNAQADA--YEYMVDYSQTNKQA 135 (361)
Q Consensus 61 ~~V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~~---~~tl~Vtd~F~lP~~~te~rv~~~~e~--~eY~~~ml~~~r~v 135 (361)
.++.|+...+-|.+.-|-. ..++||+|.|+.- .+..+|+...-.|+.++.+.|+...+. .+|+
T Consensus 39 ~t~vlPknllkkFi~IADl--rTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l---------- 106 (273)
T 2p8r_A 39 YTYILPKNILKKFITISDL--RTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL---------- 106 (273)
T ss_dssp CEEEEEHHHHHHHHHTSCS--SSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT----------
T ss_pred cEEEecHHHHHHHHHHhhc--cceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh----------
Confidence 4789999999999877754 4689999999974 356889988888888888777664321 2331
Q ss_pred CCCCceEEEEecCCCCCCccCHHhHHHHHhhhhc---C--CCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018085 136 GRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQF---Q--EPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (361)
Q Consensus 136 ~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~---~--~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~ 202 (361)
.++..+||-|+||.-.|++|..||.||..||.. . +..|+|++.+. .|..+++||||++.||.
T Consensus 107 -~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft----pgs~sl~af~LT~~G~~ 173 (273)
T 2p8r_A 107 -RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT----PGSVSLTAYKLTPSGYE 173 (273)
T ss_dssp -TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred -ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC----CCCceeEEEEcChHHhh
Confidence 578999999999999999999999999999974 3 48899999974 68889999999998863
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.9e-07 Score=94.81 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=95.4
Q ss_pred EEEECHHHHHHHHHHHhcCCCceeEEEeceeecC---CeEEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhCCC
Q 018085 62 RVKISALALLKMVVHARSGGTIEVMGLMQGKTDG---DAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRL 138 (361)
Q Consensus 62 ~V~Is~~vLlkIl~Ha~~~~p~EV~GlLlG~~~~---~tl~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~~~ 138 (361)
.+.|+...|-|.+.-|-. ..++||+|.|..-. +..+|+...-.|+.|+.+.|++. ...+ .+... .-.+
T Consensus 350 tyVlPkNLLkKFI~IADl--rTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~lp~--he~~~----~l~d 420 (565)
T 3sbg_A 350 VYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQIS-NIPD--IGDLP----DTEG 420 (565)
T ss_dssp EEEEEHHHHHHHHHHSCS--SSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEEC-CCCC--CTTST----TCTT
T ss_pred EEEccHHHHHHHHHHhhc--cceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECC-CCCc--ccccc----cccc
Confidence 688999999998876653 46899999999863 46889877777888887777654 1100 00000 0257
Q ss_pred CceEEEEecCCCCCCccCHHhHHHHHhh-hhcCCCeEEEEEcCCCCccCCeeeEEEEEEccCCCC
Q 018085 139 ENAVGWYHSHPGYGCWLSGIDVSTQMLN-QQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK 202 (361)
Q Consensus 139 e~vVGWYHSHP~~~~~pS~~DV~tQ~~y-Q~~~~p~V~LIvDP~~t~~~Gk~~ikAFRl~p~~~~ 202 (361)
+..+||-|+||.-.|++|..|+.+|+.. +.....+|.++++ ...|.+++.||.++|+||.
T Consensus 421 Le~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvs----ftPGS~SLsAy~LT~eGye 481 (565)
T 3sbg_A 421 LELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIF----STPGSVSLSAYNLTDEGYQ 481 (565)
T ss_dssp CEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEE----EETTEEEEEEEEECHHHHH
T ss_pred CEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEE----ecCCceEEEEEecCHhHHH
Confidence 8999999999999999999999999754 2222367888877 3479999999999999863
No 13
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=62.63 E-value=59 Score=26.76 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHhcCCCceeEEEeceeecCCe-EEEEEEEeCCCccCCcccccccChHHHHHHHHHHHHHhCCCCceEEE
Q 018085 66 SALALLKMVVHARSGGTIEVMGLMQGKTDGDA-IIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGW 144 (361)
Q Consensus 66 s~~vLlkIl~Ha~~~~p~EV~GlLlG~~~~~t-l~Vtd~F~lP~~~te~rv~~~~e~~eY~~~ml~~~r~v~~~e~vVGW 144 (361)
++..+...++......+.|+..+|+ ....+. +.....| .|+-+... ..+.+-...+++ .+..-|..
T Consensus 7 s~~~v~~~l~~~l~~~~~E~f~vl~-Ld~~n~li~~~~l~----~Gt~~~~~--v~pRei~~~Al~------~~A~~vIl 73 (126)
T 2qlc_A 7 GARDVFEYMKGRIPDETKEHLFVLF-LSTKNQILRHETIT----IGTLTASL--IHPREIFKAAIR------ESAHSIIL 73 (126)
T ss_dssp SHHHHHHHHTTCCSCTTSCEEEEEE-ECTTCBEEEEEEEE----ESSCCGGG--CCHHHHHHHHHH------TTCSEEEE
T ss_pred CHHHHHHHHHHHhCcCCCeEEEEEE-EcCCCCEEEEEEec----CCCCCcEe--ecHHHHHHHHHH------cCCcEEEE
Confidence 4455555555544456777765554 122232 2222222 23333222 234443333322 33578888
Q ss_pred EecCCCCCCccCHHhHHH
Q 018085 145 YHSHPGYGCWLSGIDVST 162 (361)
Q Consensus 145 YHSHP~~~~~pS~~DV~t 162 (361)
-|.||...+.||.-|+..
T Consensus 74 ~HNHPSG~~~PS~~D~~~ 91 (126)
T 2qlc_A 74 VHNHPSGDVQPSNADKQV 91 (126)
T ss_dssp EEECSSSCCSCCHHHHHH
T ss_pred EecCCCCCCCCCHHHHHH
Confidence 999999999999999984
No 14
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=30.05 E-value=18 Score=25.73 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=8.6
Q ss_pred CceEEEEecCC
Q 018085 139 ENAVGWYHSHP 149 (361)
Q Consensus 139 e~vVGWYHSHP 149 (361)
-.|||||.+.-
T Consensus 24 g~ivgwyct~l 34 (62)
T 2rh2_A 24 GQIVGWYCTNL 34 (62)
T ss_dssp EEEEEEECCSS
T ss_pred ceEeEEEEccc
Confidence 47999998754
No 15
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=21.04 E-value=2.5e+02 Score=26.18 Aligned_cols=74 Identities=7% Similarity=0.042 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCceEEEEecCCCCCCccCHHhHHHHHhhhhcCCCeEEE-EEcCCCCccCCeeeEEE----EEEcc
Q 018085 124 YMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAV-VIDPTRTVSAGKVEIGA----FRTYP 198 (361)
Q Consensus 124 Y~~~ml~~~r~v~~~e~vVGWYHSHP~~~~~pS~~DV~tQ~~yQ~~~~p~V~L-IvDP~~t~~~Gk~~ikA----FRl~p 198 (361)
|.-.|.--+...+++..||-.=|.=|-+..+-...-+. ..|.-+.+..|+| ||||--...+.-+.+++ |-+.|
T Consensus 18 yVg~mKGVi~~i~p~~~IvDitH~I~pfdi~~aA~~L~--~~~~yfP~gTVhv~VVDPGVGt~Rr~i~v~~~~~~~fVgP 95 (283)
T 2q6k_A 18 AHALCKGVMYGVAPAATIVDITHDVAPFDVREGALFLA--DVPHSFPAHTVICAYVYPETGTATHTIAVRNEKGQLLVGP 95 (283)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCSCTTCHHHHHHHHT--THHHHSCTTEEEEEECCTTTTSSCCEEEEEETTSCEEEEE
T ss_pred cHHHHHHHHHhhCcCCeEEEecCCCCCcCHHHHHHHHH--HhhccCCCCCEEEEEECCCCCCCCceEEEEEcCCcEEEEc
Confidence 55566666667789999999988888666554443322 2333355567888 77996543344466665 55555
Q ss_pred C
Q 018085 199 E 199 (361)
Q Consensus 199 ~ 199 (361)
.
T Consensus 96 D 96 (283)
T 2q6k_A 96 N 96 (283)
T ss_dssp S
T ss_pred C
Confidence 3
Done!