BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018088
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 121 GLIFSWD-VVADTRALKLNAWKQLAFEEGKEI-PQEGDVLRQILNAGADHVLHKVLLWGK 178
G+IF D V+ DT L AW+Q+A E G I Q + L+ I D L ++L G
Sbjct: 7 GVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGI---SRDESLRRILQHGG 63
Query: 179 EESELD-----RLNSRLTQLYYDNL--LSVTEPMEGLQEWLDAVSSARIPCAVVS-GLDR 230
+E + + +L R LY +L L+V + G++ L + + +I + S L+
Sbjct: 64 KEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNA 123
Query: 231 RKMVEALERMGLLKYFQAIVSEEDGMESMAHRFLSAAVKLDRKPSKCVVFEDDPRAITAA 290
++ ALE F A S+ + FL+A L P C+ ED I A
Sbjct: 124 PTILAALELREFFT-FCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAI 182
Query: 291 HNCTMMAVGLIGA 303
+ M +VG IGA
Sbjct: 183 NASGMRSVG-IGA 194
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 21/216 (9%)
Query: 121 GLIFSWD-VVADTRALKLNAWKQLAFEEGKEIPQEGDVLRQILNAGADHVLHKVLLWGKE 179
+IF D V+ DT AWK +A E +IP + D ++ + L +L++G
Sbjct: 4 AVIFDLDGVITDTAEYHFLAWKHIA--EQIDIPFDRDXNERLKGISREESLESILIFGGA 61
Query: 180 ESELDRLNSRLTQLY------YDNLLSVTEP---MEGLQEWLDAVSSARIPCAVVSGLDR 230
E++ N+ +L Y L+S P + G+ L + + I + S
Sbjct: 62 ETKY--TNAEKQELXHRKNRDYQXLISKLTPEDLLPGIGRLLCQLKNENIKIGLASS--S 117
Query: 231 RKMVEALERMGLLKYFQAIVSEEDGMESMAHR--FLSAAVKLDRKPSKCVVFEDDPRAIT 288
R + L R+ ++ F AIV + FL+AA LD P+ C ED I+
Sbjct: 118 RNAPKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAXLDVSPADCAAIEDAEAGIS 177
Query: 289 AAHNCTMMAVGLIGAHRAYDLVQADLAVANFNELSV 324
A + AVG+ + + ADL V ++L++
Sbjct: 178 AIKSAGXFAVGV---GQGQPXLGADLVVRQTSDLTL 210
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 13/195 (6%)
Query: 121 GLIFSWD-VVADTRALKLNAWKQLAFEEGKEIPQEGDVLRQILNAGADHVLHKVLLWGKE 179
+IF D V+ DT L A++++A GK P D+ R+I L + +
Sbjct: 3 AVIFDXDGVLXDTEPLYFEAYRRVAESYGK--PYTEDLHRRIXGVPEREGLPILXEALEI 60
Query: 180 ESELDRLNSRLTQLYYDNLLSVTEPMEGLQEWLDAVSSARIPCAVVSGLDRRKMVEALER 239
+ L+ R+ + + + G++E L+ V S RI A+ + +R+ +E L R
Sbjct: 61 KDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLRR 120
Query: 240 MGLLKYFQAIV--SEEDGMESMAHRFLSAAVKLDRKPSKCVVFEDDPRAITAAHNCTMMA 297
+ L KYF V + + +L +L+ P K VVFED + AA +
Sbjct: 121 LDLEKYFDVXVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSA---- 176
Query: 298 VGLIGAHRAYDLVQA 312
G R Y +V +
Sbjct: 177 ----GIERIYGVVHS 187
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 19/213 (8%)
Query: 121 GLIFSWD-VVADTRALKLNAWKQLAFEEGKEIPQE-GDVLRQILNAGADHVLHKVLLWGK 178
IF D V+ DT AW++LA + G +I + + L+ I + L ++L +G
Sbjct: 28 AFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLKGISRMES---LDRILEFGN 84
Query: 179 E-----ESELDRLNSRLTQLYYDNLLSVT--EPMEGLQEWLDAVSSARIPCAVVSGLDRR 231
+ E E R+ Y + +T + + G++ L V S I + S +
Sbjct: 85 KKYSFSEEEKVRMAEEKNNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSA--SK 142
Query: 232 KMVEALERMGLLKYFQAIVSEEDGMESMAHR--FLSAAVKLDRKPSKCVVFEDDPRAITA 289
+ L +G+ F I + H FL +A L+ P C+ ED I A
Sbjct: 143 NAINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDA 202
Query: 290 AHNCTMMAVGLIGAHRAYDLVQADLAVANFNEL 322
++ M +VG +G + +L +A+L V + N+L
Sbjct: 203 INSANMFSVG-VGNYE--NLKKANLVVDSTNQL 232
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 33/199 (16%)
Query: 121 GLIFSWD-VVADTRALKLNAWKQLAFEEG------------KEIPQEGDVLRQILNAGAD 167
++F D V+ DT AWK LA E G K + +E D L++IL+
Sbjct: 4 AVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSRE-DSLQKILDLADK 62
Query: 168 HVLHKVLLWGKEESEL-DRLNSRLTQLYYDNLLSVTEPMEGLQEWLDAVSSARIPCAVVS 226
V +E EL R N ++ D +S + G+ + L + S +I A+ S
Sbjct: 63 KV------SAEEFKELAKRKNDNYVKMIQD--VSPADVYPGILQLLKDLRSNKIKIALAS 114
Query: 227 GLDRRKMVEALERMGLLKYFQAIVSEEDGMESMAHR-----FLSAAVKLDRKPSKCVVFE 281
+ LERM L YF AI D E A + F++AA + PS+ + E
Sbjct: 115 ASKNGPFL--LERMNLTGYFDAIA---DPAEVAASKPAPDIFIAAAHAVGVAPSESIGLE 169
Query: 282 DDPRAITAAHNCTMMAVGL 300
D I A + + +G+
Sbjct: 170 DSQAGIQAIKDSGALPIGV 188
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 33/199 (16%)
Query: 121 GLIFSWD-VVADTRALKLNAWKQLAFEEG------------KEIPQEGDVLRQILNAGAD 167
++F D V+ DT AWK LA E G K + +E D L++IL+
Sbjct: 4 AVLFXLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSRE-DSLQKILDLADK 62
Query: 168 HVLHKVLLWGKEESEL-DRLNSRLTQLYYDNLLSVTEPMEGLQEWLDAVSSARIPCAVVS 226
V +E EL R N ++ D +S + G+ + L + S +I A+ S
Sbjct: 63 KV------SAEEFKELAKRKNDNYVKMIQD--VSPADVYPGILQLLKDLRSNKIKIALAS 114
Query: 227 GLDRRKMVEALERMGLLKYFQAIVSEEDGMESMAHR-----FLSAAVKLDRKPSKCVVFE 281
+ LERM L YF AI D E A + F++AA + PS+ + E
Sbjct: 115 ASKNGPFL--LERMNLTGYFDAIA---DPAEVAASKPAPDIFIAAAHAVGVAPSESIGLE 169
Query: 282 DDPRAITAAHNCTMMAVGL 300
D I A + + +G+
Sbjct: 170 DSQAGIQAIKDSGALPIGV 188
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 33/199 (16%)
Query: 121 GLIFSWD-VVADTRALKLNAWKQLAFEEG------------KEIPQEGDVLRQILNAGAD 167
++F D V+ D AWK LA E G K + +E D L++IL+
Sbjct: 4 AVLFDLDGVITDPAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSRE-DSLQKILDLADK 62
Query: 168 HVLHKVLLWGKEESEL-DRLNSRLTQLYYDNLLSVTEPMEGLQEWLDAVSSARIPCAVVS 226
V +E EL R N ++ D +S + G+ + L + S +I A+ S
Sbjct: 63 KV------SAEEFKELAKRKNDNYVKMIQD--VSPADVYPGILQLLKDLRSNKIKIALAS 114
Query: 227 GLDRRKMVEALERMGLLKYFQAIVSEEDGMESMAHR-----FLSAAVKLDRKPSKCVVFE 281
+ LERM L YF AI D E A + F++AA + PS+ + E
Sbjct: 115 ASKNGPFL--LERMNLTGYFDAIA---DPAEVAASKPAPDIFIAAAHAVGVAPSESIGLE 169
Query: 282 DDPRAITAAHNCTMMAVGL 300
D I A + + +G+
Sbjct: 170 DSQAGIQAIKDSGALPIGV 188
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 206 EGLQEWLDAVSSARIPCAVVSGLDRRKMVEALERMGLLKYFQAIVSEED--GMESMAHRF 263
+G E LD + I A+VS + ++ + L YF +I+ D ++
Sbjct: 106 DGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPV 165
Query: 264 LSAAVKLDRKPSKCVVFEDD 283
L+A ++ +PSK V F D
Sbjct: 166 LAALTNINIEPSKEVFFIGD 185
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 10/160 (6%)
Query: 151 IPQEG-DVLRQILNAGADHVLHKVLLWG-----KE--ESELDRLNSRLTQLYYDNLLSVT 202
+PQ +++ + GAD + + + W KE E E + Y +NL +++
Sbjct: 54 LPQASENLVXTWIGNGADVLSQRAVDWACKQAEKELTEDEFKYFKRQFGFYYGENLCNIS 113
Query: 203 EPMEGLQEWLDAVSSARIPCAVVSGLDRRKMVEALERMGLLKYFQAIVSEEDGMESMAH- 261
++E L+A+ + AVV+ + + L G+ F + + E H
Sbjct: 114 RLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDHLFSEXLGGQSLPEIKPHP 173
Query: 262 -RFLSAAVKLDRKPSKCVVFEDDPRAITAAHNCTMMAVGL 300
F K P + + D I AAH+ VGL
Sbjct: 174 APFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGL 213
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 145 FEEGKEIPQEGDVLRQILNAGADHVLHKVLLWGKEESELDRLNSRLTQLYYDNL 198
F +G E+P E V R + +H L K LWG+ L + RL LY DNL
Sbjct: 19 FGQGGEMPGEAAVRRSV-----EH-LQKHGLWGQPAVPLPDVELRLPPLYGDNL 66
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 263 FLSAAVKLDRKPS--KCVVFEDDPRAITAAHNCTMMAVGLIGAHRAYDLVQADLAVAN 318
FL+ A + P+ KC+VFED P + AA M V + + + DL V N
Sbjct: 177 FLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 234
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 183 LDRLNSRLTQLYYDNLLSVTEPMEGLQEWLDAVSSARIPCAVVSGLDRRKMVEALERMGL 242
LD L +R ++ ++ +EG E L A+ +A +P A+ S +R ++ L GL
Sbjct: 95 LDVLETR-----FNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGL 149
Query: 243 LKYFQAIVSEED--GMESMAHR--FLSAAVKLDRKPSKCVVFED 282
+ + + G H + AA +L P +CVV ED
Sbjct: 150 TELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPERCVVIED 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,367,648
Number of Sequences: 62578
Number of extensions: 417436
Number of successful extensions: 926
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 17
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)