Query 018089
Match_columns 361
No_of_seqs 324 out of 3451
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 5.1E-85 1.1E-89 578.5 25.9 358 3-361 8-372 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 3.8E-57 8.3E-62 367.0 16.3 169 4-180 40-209 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 1.3E-54 2.7E-59 329.9 12.6 167 3-172 10-176 (177)
4 KOG0111 Cyclophilin-type pepti 100.0 9.9E-50 2.1E-54 328.4 9.8 164 1-173 134-297 (298)
5 PTZ00221 cyclophilin; Provisio 100.0 4.1E-47 8.9E-52 330.9 20.3 175 2-180 51-226 (249)
6 KOG0881 Cyclophilin type pepti 100.0 9.3E-49 2E-53 294.3 8.4 153 3-172 9-162 (164)
7 cd01926 cyclophilin_ABH_like c 100.0 2.8E-46 6.1E-51 312.5 19.3 164 4-171 1-164 (164)
8 PLN03149 peptidyl-prolyl isome 100.0 2E-46 4.4E-51 317.7 18.1 170 1-173 16-186 (186)
9 PTZ00060 cyclophilin; Provisio 100.0 7.7E-46 1.7E-50 314.1 19.2 170 1-173 13-182 (183)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 7.3E-46 1.6E-50 300.7 14.7 145 13-171 4-155 (158)
11 cd01923 cyclophilin_RING cyclo 100.0 8.3E-43 1.8E-47 289.6 17.4 152 15-178 6-158 (159)
12 cd01927 cyclophilin_WD40 cyclo 100.0 8.2E-43 1.8E-47 286.2 16.5 143 15-169 4-147 (148)
13 cd01928 Cyclophilin_PPIL3_like 100.0 1.7E-42 3.8E-47 285.6 16.7 144 15-170 7-151 (153)
14 cd01922 cyclophilin_SpCYP2_lik 100.0 3.1E-42 6.6E-47 281.9 16.1 141 15-168 4-145 (146)
15 cd01921 cyclophilin_RRM cyclop 100.0 6.8E-42 1.5E-46 286.4 16.9 153 15-179 4-165 (166)
16 KOG0883 Cyclophilin type, U bo 100.0 1.4E-42 3E-47 307.7 10.8 155 7-176 279-434 (518)
17 KOG0865 Cyclophilin type pepti 100.0 3.8E-42 8.2E-47 281.1 10.4 164 1-173 1-167 (167)
18 KOG0882 Cyclophilin-related pe 100.0 1.3E-41 2.7E-46 307.5 10.5 152 9-172 405-557 (558)
19 KOG0884 Similar to cyclophilin 100.0 2.9E-41 6.3E-46 252.4 10.0 150 15-176 7-158 (161)
20 cd01925 cyclophilin_CeCYP16-li 100.0 3.3E-40 7.2E-45 277.1 17.0 160 5-181 7-168 (171)
21 PRK10903 peptidyl-prolyl cis-t 100.0 2.3E-39 4.9E-44 275.3 16.9 152 3-173 28-189 (190)
22 PRK10791 peptidyl-prolyl cis-t 100.0 1.3E-38 2.9E-43 264.8 16.4 144 15-172 6-162 (164)
23 cd01920 cyclophilin_EcCYP_like 100.0 3.4E-38 7.4E-43 260.8 15.7 141 15-169 4-154 (155)
24 cd01924 cyclophilin_TLP40_like 100.0 2.9E-36 6.4E-41 253.4 13.6 127 15-153 4-165 (176)
25 cd00317 cyclophilin cyclophili 100.0 1.1E-35 2.5E-40 245.1 16.2 141 15-168 4-145 (146)
26 KOG0885 Peptidyl-prolyl cis-tr 100.0 6.7E-36 1.5E-40 264.4 10.6 161 5-182 14-176 (439)
27 PF00160 Pro_isomerase: Cyclop 100.0 4.6E-35 1E-39 244.0 15.1 151 7-172 1-155 (155)
28 KOG0415 Predicted peptidyl pro 100.0 3.9E-33 8.5E-38 245.0 12.6 154 15-180 7-169 (479)
29 KOG0543 FKBP-type peptidyl-pro 99.9 1.1E-24 2.4E-29 198.4 18.5 158 201-361 197-354 (397)
30 KOG0553 TPR repeat-containing 99.9 1.5E-22 3.3E-27 177.6 11.6 125 207-349 76-200 (304)
31 KOG0545 Aryl-hydrocarbon recep 99.8 6E-20 1.3E-24 156.1 16.3 161 201-361 167-328 (329)
32 KOG4234 TPR repeat-containing 99.8 2.3E-19 4.9E-24 148.4 14.2 137 205-354 88-224 (271)
33 KOG0548 Molecular co-chaperone 99.7 1.4E-16 3E-21 149.4 11.5 117 211-345 357-473 (539)
34 KOG4648 Uncharacterized conser 99.7 1.8E-16 4E-21 141.1 8.0 121 205-343 90-210 (536)
35 KOG0547 Translocase of outer m 99.7 7.9E-16 1.7E-20 142.6 12.4 132 202-351 105-237 (606)
36 PRK15359 type III secretion sy 99.6 3.1E-15 6.8E-20 122.7 13.6 116 214-347 26-141 (144)
37 PLN03088 SGT1, suppressor of 99.6 2.8E-15 6E-20 141.2 13.8 118 213-348 3-120 (356)
38 KOG0550 Molecular chaperone (D 99.6 5.4E-15 1.2E-19 134.7 10.2 132 205-351 242-373 (486)
39 KOG0548 Molecular co-chaperone 99.6 1.2E-14 2.6E-19 136.4 9.7 113 212-342 2-114 (539)
40 KOG0551 Hsp90 co-chaperone CNS 99.5 5.1E-14 1.1E-18 125.2 11.8 108 211-332 80-187 (390)
41 PRK15363 pathogenicity island 99.5 2.6E-13 5.7E-18 110.2 14.2 115 211-343 34-148 (157)
42 TIGR02552 LcrH_SycD type III s 99.5 3.2E-13 6.9E-18 109.4 13.1 118 211-346 16-133 (135)
43 KOG4626 O-linked N-acetylgluco 99.5 1.1E-13 2.4E-18 131.7 8.5 124 210-351 250-373 (966)
44 TIGR00990 3a0801s09 mitochondr 99.5 1.6E-12 3.4E-17 131.8 16.6 113 201-332 116-228 (615)
45 KOG4626 O-linked N-acetylgluco 99.5 4.3E-13 9.3E-18 127.7 11.0 118 211-346 387-504 (966)
46 PRK11189 lipoprotein NlpI; Pro 99.4 1.6E-12 3.4E-17 119.8 14.0 105 211-333 63-167 (296)
47 PRK10370 formate-dependent nit 99.4 3.5E-12 7.6E-17 110.3 12.6 117 205-339 66-185 (198)
48 KOG0376 Serine-threonine phosp 99.4 3.4E-13 7.3E-18 125.9 6.2 122 211-350 3-124 (476)
49 KOG4642 Chaperone-dependent E3 99.4 1.4E-12 3E-17 111.2 8.4 116 211-344 9-129 (284)
50 TIGR00990 3a0801s09 mitochondr 99.4 8.9E-12 1.9E-16 126.4 14.0 121 211-349 330-450 (615)
51 PF13414 TPR_11: TPR repeat; P 99.3 6.9E-12 1.5E-16 89.2 7.5 66 264-329 3-69 (69)
52 KOG1126 DNA-binding cell divis 99.3 2.6E-12 5.7E-17 123.6 6.7 142 211-352 420-577 (638)
53 TIGR02795 tol_pal_ybgF tol-pal 99.3 5.7E-11 1.2E-15 93.5 11.6 111 212-337 2-115 (119)
54 KOG1155 Anaphase-promoting com 99.3 4.3E-11 9.4E-16 110.9 12.2 120 216-353 334-453 (559)
55 KOG1155 Anaphase-promoting com 99.3 9.1E-11 2E-15 108.8 14.2 125 209-351 361-485 (559)
56 PRK15359 type III secretion sy 99.3 6.2E-11 1.3E-15 97.2 11.7 101 232-353 13-113 (144)
57 KOG0624 dsRNA-activated protei 99.2 1E-10 2.2E-15 104.9 12.3 115 211-343 37-154 (504)
58 PRK09782 bacteriophage N4 rece 99.2 1.2E-10 2.6E-15 122.1 14.9 121 213-351 610-730 (987)
59 PRK10370 formate-dependent nit 99.2 1.3E-10 2.8E-15 100.5 12.4 110 225-352 52-164 (198)
60 KOG1126 DNA-binding cell divis 99.2 7.2E-11 1.6E-15 113.8 11.3 128 211-356 488-615 (638)
61 PF13414 TPR_11: TPR repeat; P 99.2 3.3E-11 7.1E-16 85.7 6.5 67 211-295 2-69 (69)
62 PRK02603 photosystem I assembl 99.2 2.1E-10 4.5E-15 97.1 12.5 110 207-331 30-153 (172)
63 COG3063 PilF Tfp pilus assembl 99.2 2.3E-10 4.9E-15 97.6 12.5 122 211-350 34-191 (250)
64 PRK15179 Vi polysaccharide bio 99.2 1.5E-10 3.3E-15 117.0 13.5 124 211-352 85-208 (694)
65 PRK12370 invasion protein regu 99.2 1.6E-10 3.4E-15 115.6 13.5 115 215-347 341-456 (553)
66 cd00189 TPR Tetratricopeptide 99.2 1.7E-10 3.8E-15 85.4 9.4 99 214-330 2-100 (100)
67 KOG1308 Hsp70-interacting prot 99.2 1.6E-11 3.4E-16 110.1 4.1 157 159-348 75-231 (377)
68 PRK12370 invasion protein regu 99.2 2.6E-10 5.6E-15 114.1 13.4 105 225-347 317-421 (553)
69 KOG0547 Translocase of outer m 99.2 2.5E-10 5.4E-15 106.6 11.8 124 211-352 325-448 (606)
70 PRK15331 chaperone protein Sic 99.2 3.1E-10 6.8E-15 92.7 10.9 117 211-346 36-152 (165)
71 PF12895 Apc3: Anaphase-promot 99.2 1.3E-10 2.9E-15 86.0 7.8 81 225-324 2-84 (84)
72 PF13432 TPR_16: Tetratricopep 99.2 1.8E-10 3.9E-15 80.8 8.0 65 268-332 1-65 (65)
73 TIGR02521 type_IV_pilW type IV 99.2 6.8E-10 1.5E-14 97.1 13.4 90 262-351 133-222 (234)
74 TIGR02521 type_IV_pilW type IV 99.2 9.4E-10 2E-14 96.2 14.3 121 212-350 31-187 (234)
75 PRK09782 bacteriophage N4 rece 99.1 4.4E-10 9.6E-15 117.9 14.0 111 224-353 588-698 (987)
76 KOG1125 TPR repeat-containing 99.1 1.1E-10 2.3E-15 111.1 8.2 118 212-347 430-557 (579)
77 TIGR03302 OM_YfiO outer membra 99.1 1.3E-09 2.8E-14 96.9 14.5 115 211-340 32-157 (235)
78 COG5010 TadD Flp pilus assembl 99.1 7.8E-10 1.7E-14 96.1 11.3 122 213-352 101-222 (257)
79 CHL00033 ycf3 photosystem I as 99.1 1.1E-09 2.4E-14 92.3 12.1 108 210-332 33-154 (168)
80 TIGR02552 LcrH_SycD type III s 99.1 7.5E-10 1.6E-14 89.5 10.5 94 259-352 12-105 (135)
81 KOG0624 dsRNA-activated protei 99.1 3.9E-10 8.5E-15 101.1 9.2 124 212-349 269-392 (504)
82 PF13429 TPR_15: Tetratricopep 99.1 6.7E-10 1.4E-14 101.6 10.4 125 211-353 145-269 (280)
83 PRK11189 lipoprotein NlpI; Pro 99.1 2.2E-09 4.8E-14 98.9 13.8 113 226-352 40-152 (296)
84 PLN02789 farnesyltranstransfer 99.1 2.7E-09 5.9E-14 98.7 14.0 119 209-345 68-189 (320)
85 PRK15174 Vi polysaccharide exp 99.1 1.4E-09 3.1E-14 110.7 12.9 116 215-348 249-368 (656)
86 PRK15174 Vi polysaccharide exp 99.1 1.5E-09 3.3E-14 110.6 13.0 117 218-352 218-338 (656)
87 KOG1173 Anaphase-promoting com 99.1 1.4E-09 3E-14 103.3 11.6 122 212-344 414-535 (611)
88 KOG4555 TPR repeat-containing 99.0 4.4E-09 9.6E-14 81.8 12.0 105 207-329 38-146 (175)
89 PRK15363 pathogenicity island 99.0 6.1E-09 1.3E-13 84.8 11.4 96 259-354 29-125 (157)
90 TIGR02917 PEP_TPR_lipo putativ 99.0 4.5E-09 9.7E-14 110.1 13.5 129 212-360 770-898 (899)
91 PRK10049 pgaA outer membrane p 99.0 6.7E-09 1.4E-13 107.8 13.6 115 212-345 49-163 (765)
92 TIGR03302 OM_YfiO outer membra 98.9 6.4E-09 1.4E-13 92.4 11.0 126 213-353 71-224 (235)
93 PLN02789 farnesyltranstransfer 98.9 3.2E-08 6.9E-13 91.6 15.9 113 221-351 46-161 (320)
94 PRK10803 tol-pal system protei 98.9 1.6E-08 3.4E-13 91.0 13.3 112 213-339 143-258 (263)
95 KOG2076 RNA polymerase III tra 98.9 1.7E-08 3.7E-13 100.5 14.6 124 211-352 138-261 (895)
96 KOG0553 TPR repeat-containing 98.9 6.3E-09 1.4E-13 92.2 10.4 93 265-358 82-174 (304)
97 PF13371 TPR_9: Tetratricopept 98.9 5.6E-09 1.2E-13 74.9 8.3 70 271-340 2-71 (73)
98 KOG2003 TPR repeat-containing 98.9 4.3E-09 9.2E-14 97.6 9.4 123 211-351 489-611 (840)
99 PRK15179 Vi polysaccharide bio 98.9 1.3E-08 2.8E-13 103.2 13.7 124 205-346 113-237 (694)
100 PRK11447 cellulose synthase su 98.9 1E-08 2.2E-13 111.1 13.6 119 216-352 355-515 (1157)
101 TIGR02917 PEP_TPR_lipo putativ 98.9 1.3E-08 2.8E-13 106.6 13.8 123 211-351 124-246 (899)
102 PRK11788 tetratricopeptide rep 98.9 2.5E-08 5.5E-13 95.2 14.4 116 215-349 183-299 (389)
103 COG3063 PilF Tfp pilus assembl 98.9 1.1E-08 2.3E-13 87.5 10.3 128 209-352 100-227 (250)
104 KOG0550 Molecular chaperone (D 98.9 1.5E-08 3.3E-13 93.1 11.9 137 211-353 202-342 (486)
105 COG4783 Putative Zn-dependent 98.9 2.2E-08 4.7E-13 94.1 13.2 130 211-358 305-434 (484)
106 PRK11788 tetratricopeptide rep 98.9 2E-08 4.4E-13 95.9 13.4 87 265-351 181-268 (389)
107 PRK11447 cellulose synthase su 98.9 1.4E-08 3E-13 110.1 13.2 116 217-350 274-403 (1157)
108 PF14559 TPR_19: Tetratricopep 98.9 4.2E-09 9.1E-14 74.4 6.2 67 275-341 2-68 (68)
109 PF13432 TPR_16: Tetratricopep 98.9 3.5E-09 7.6E-14 74.2 5.6 64 217-298 2-65 (65)
110 PRK10866 outer membrane biogen 98.9 1.1E-07 2.4E-12 84.8 16.0 130 212-356 32-185 (243)
111 COG4235 Cytochrome c biogenesi 98.9 2.3E-08 5.1E-13 89.1 11.1 123 204-344 148-273 (287)
112 PF13512 TPR_18: Tetratricopep 98.8 4.2E-08 9E-13 78.6 11.1 110 212-336 10-137 (142)
113 COG4785 NlpI Lipoprotein NlpI, 98.8 2.8E-08 6.1E-13 84.1 9.6 129 211-357 64-194 (297)
114 cd00189 TPR Tetratricopeptide 98.8 1.1E-07 2.3E-12 70.0 11.5 87 266-352 2-88 (100)
115 PF13525 YfiO: Outer membrane 98.8 1.4E-07 3E-12 82.0 13.8 130 211-355 4-150 (203)
116 PRK10049 pgaA outer membrane p 98.8 6.1E-08 1.3E-12 100.7 13.3 108 213-338 360-467 (765)
117 PF06552 TOM20_plant: Plant sp 98.8 7.8E-08 1.7E-12 79.5 11.1 104 227-348 6-130 (186)
118 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.6E-08 3.4E-13 95.3 8.0 70 258-327 69-141 (453)
119 KOG1125 TPR repeat-containing 98.8 3.6E-08 7.8E-13 94.1 10.2 154 204-357 311-523 (579)
120 CHL00033 ycf3 photosystem I as 98.8 1.4E-07 3E-12 79.5 12.3 113 218-346 5-120 (168)
121 KOG1128 Uncharacterized conser 98.7 3.4E-08 7.4E-13 96.5 8.8 123 211-351 484-606 (777)
122 PLN03088 SGT1, suppressor of 98.7 1.1E-07 2.4E-12 89.8 11.7 87 267-353 5-91 (356)
123 PF13424 TPR_12: Tetratricopep 98.7 3.4E-08 7.3E-13 71.8 6.4 67 261-327 2-75 (78)
124 PRK14574 hmsH outer membrane p 98.7 1.5E-07 3.3E-12 97.2 13.4 109 212-338 34-142 (822)
125 PF14559 TPR_19: Tetratricopep 98.7 3.6E-08 7.8E-13 69.6 6.2 67 222-306 1-67 (68)
126 KOG4162 Predicted calmodulin-b 98.7 6.9E-08 1.5E-12 94.9 10.1 103 212-332 684-788 (799)
127 KOG1129 TPR repeat-containing 98.7 1.8E-08 4E-13 90.0 5.6 141 211-351 289-448 (478)
128 COG5010 TadD Flp pilus assembl 98.7 1.9E-07 4.2E-12 81.4 11.6 123 216-356 70-192 (257)
129 COG4783 Putative Zn-dependent 98.7 3.1E-07 6.8E-12 86.4 13.6 112 216-345 344-455 (484)
130 PRK02603 photosystem I assembl 98.7 2.3E-07 4.9E-12 78.5 11.2 89 259-347 30-121 (172)
131 KOG1310 WD40 repeat protein [G 98.7 1E-07 2.2E-12 90.1 9.4 124 205-346 367-493 (758)
132 PF13371 TPR_9: Tetratricopept 98.7 7.5E-08 1.6E-12 68.9 6.7 70 219-306 2-71 (73)
133 PF09976 TPR_21: Tetratricopep 98.7 2.6E-07 5.6E-12 75.8 10.7 96 213-324 49-144 (145)
134 PF13424 TPR_12: Tetratricopep 98.7 1.7E-07 3.6E-12 68.1 8.4 73 210-293 3-75 (78)
135 KOG2002 TPR-containing nuclear 98.6 1E-07 2.2E-12 95.9 9.3 115 218-350 652-768 (1018)
136 TIGR02795 tol_pal_ybgF tol-pal 98.6 4.2E-07 9E-12 71.2 11.1 88 265-352 3-96 (119)
137 PF13429 TPR_15: Tetratricopep 98.6 1.4E-07 3.1E-12 86.1 9.6 124 213-352 111-234 (280)
138 PF12688 TPR_5: Tetratrico pep 98.6 6.7E-07 1.5E-11 70.4 11.6 99 213-326 2-103 (120)
139 KOG2002 TPR-containing nuclear 98.6 5.6E-07 1.2E-11 90.7 13.7 122 210-346 268-390 (1018)
140 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 3.6E-07 7.8E-12 86.3 10.1 68 209-294 72-142 (453)
141 KOG1840 Kinesin light chain [C 98.6 9.2E-07 2E-11 86.0 12.9 132 211-352 240-387 (508)
142 COG1729 Uncharacterized protei 98.5 1.1E-06 2.4E-11 77.5 11.7 112 213-339 142-256 (262)
143 KOG3060 Uncharacterized conser 98.5 2.3E-06 4.9E-11 74.4 13.1 138 214-351 88-244 (289)
144 PRK14720 transcript cleavage f 98.5 1.4E-06 3E-11 89.6 12.6 119 212-351 31-168 (906)
145 COG2956 Predicted N-acetylgluc 98.5 4.1E-06 8.8E-11 75.2 13.7 129 214-355 143-272 (389)
146 TIGR00540 hemY_coli hemY prote 98.5 4.9E-06 1.1E-10 80.3 15.4 126 209-352 81-207 (409)
147 PF09976 TPR_21: Tetratricopep 98.5 4.6E-06 1E-10 68.3 13.1 132 209-357 8-142 (145)
148 KOG1840 Kinesin light chain [C 98.5 2.8E-06 6E-11 82.7 13.5 131 211-351 198-344 (508)
149 PRK14574 hmsH outer membrane p 98.4 2E-06 4.4E-11 88.9 12.4 118 212-348 102-219 (822)
150 PF12895 Apc3: Anaphase-promot 98.4 4.3E-07 9.3E-12 67.0 5.5 78 277-355 2-81 (84)
151 PRK10747 putative protoheme IX 98.4 8.9E-06 1.9E-10 78.2 16.0 126 208-352 80-207 (398)
152 KOG2076 RNA polymerase III tra 98.4 4.3E-06 9.4E-11 83.8 13.4 101 211-329 172-272 (895)
153 KOG3060 Uncharacterized conser 98.4 1.2E-05 2.6E-10 70.0 14.4 88 209-314 151-241 (289)
154 KOG4162 Predicted calmodulin-b 98.4 3.1E-06 6.7E-11 83.6 12.1 121 213-351 651-773 (799)
155 KOG1156 N-terminal acetyltrans 98.4 3.9E-06 8.5E-11 81.4 12.1 120 214-351 9-128 (700)
156 cd05804 StaR_like StaR_like; a 98.4 2.1E-06 4.5E-11 81.0 9.9 100 212-329 114-217 (355)
157 PRK11906 transcriptional regul 98.3 4.7E-06 1E-10 79.0 11.5 108 227-352 273-392 (458)
158 COG4235 Cytochrome c biogenesi 98.3 9.4E-06 2E-10 72.6 11.9 93 259-351 151-246 (287)
159 PF12688 TPR_5: Tetratrico pep 98.3 1.3E-05 2.8E-10 63.1 11.0 89 265-353 2-96 (120)
160 PRK10153 DNA-binding transcrip 98.3 1.2E-05 2.7E-10 79.3 13.2 121 212-333 339-488 (517)
161 cd05804 StaR_like StaR_like; a 98.3 9.5E-06 2.1E-10 76.5 12.1 141 212-352 43-206 (355)
162 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.6E-06 9.9E-11 79.0 9.7 91 218-326 206-296 (395)
163 PRK15331 chaperone protein Sic 98.3 1.4E-05 3.1E-10 65.6 11.1 95 259-353 32-126 (165)
164 COG4700 Uncharacterized protei 98.3 2.2E-05 4.8E-10 65.3 12.2 116 211-344 88-205 (251)
165 TIGR00540 hemY_coli hemY prote 98.3 9.1E-06 2E-10 78.5 11.8 127 211-357 262-394 (409)
166 COG2956 Predicted N-acetylgluc 98.3 2.2E-05 4.7E-10 70.6 12.9 108 208-333 176-284 (389)
167 KOG4648 Uncharacterized conser 98.2 2.5E-06 5.3E-11 77.1 6.9 86 267-352 100-185 (536)
168 KOG0543 FKBP-type peptidyl-pro 98.2 4.9E-06 1.1E-10 77.1 8.6 100 213-330 258-358 (397)
169 KOG1173 Anaphase-promoting com 98.2 6.1E-06 1.3E-10 79.0 9.3 126 209-352 309-434 (611)
170 KOG1129 TPR repeat-containing 98.2 1.6E-06 3.5E-11 77.9 5.1 84 259-342 285-368 (478)
171 PF00515 TPR_1: Tetratricopept 98.2 2.2E-06 4.8E-11 51.4 4.1 32 299-330 2-33 (34)
172 PRK10153 DNA-binding transcrip 98.2 1.1E-05 2.5E-10 79.5 11.3 54 227-299 435-488 (517)
173 PF14938 SNAP: Soluble NSF att 98.2 2.1E-05 4.6E-10 72.0 12.1 109 211-331 113-229 (282)
174 PRK10803 tol-pal system protei 98.2 2E-05 4.4E-10 71.0 11.5 88 264-351 142-236 (263)
175 PF12968 DUF3856: Domain of Un 98.2 0.00012 2.7E-09 56.2 13.7 106 216-327 13-129 (144)
176 PF13431 TPR_17: Tetratricopep 98.2 1.9E-06 4.1E-11 51.7 3.0 33 287-319 2-34 (34)
177 KOG1128 Uncharacterized conser 98.2 1.4E-05 3.1E-10 78.6 10.6 90 263-352 484-573 (777)
178 PF13428 TPR_14: Tetratricopep 98.1 6E-06 1.3E-10 52.8 5.4 42 299-340 2-43 (44)
179 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.9E-05 6.3E-10 73.6 11.9 109 223-352 180-288 (395)
180 KOG1156 N-terminal acetyltrans 98.1 2.1E-05 4.5E-10 76.6 10.4 122 212-351 41-162 (700)
181 PF03704 BTAD: Bacterial trans 98.1 0.00012 2.7E-09 59.8 13.8 114 214-327 8-125 (146)
182 KOG2003 TPR repeat-containing 98.1 4.7E-05 1E-09 71.3 12.0 77 268-344 630-706 (840)
183 PF07719 TPR_2: Tetratricopept 98.1 8E-06 1.7E-10 48.8 4.8 34 298-331 1-34 (34)
184 PF00515 TPR_1: Tetratricopept 98.1 6E-06 1.3E-10 49.5 4.1 33 265-297 2-34 (34)
185 KOG1127 TPR repeat-containing 98.1 2.2E-05 4.8E-10 79.7 10.3 141 211-351 491-649 (1238)
186 KOG1174 Anaphase-promoting com 98.0 2.3E-05 5E-10 72.6 8.8 110 212-339 300-409 (564)
187 COG4105 ComL DNA uptake lipopr 98.0 0.00023 5E-09 62.5 14.7 130 212-356 34-177 (254)
188 PF13525 YfiO: Outer membrane 98.0 0.00017 3.6E-09 62.7 13.9 123 212-349 42-195 (203)
189 PRK11906 transcriptional regul 98.0 2.5E-05 5.4E-10 74.1 9.3 90 225-332 317-406 (458)
190 PRK10747 putative protoheme IX 98.0 5.9E-05 1.3E-09 72.5 12.1 120 210-351 261-380 (398)
191 PF13428 TPR_14: Tetratricopep 98.0 1.1E-05 2.3E-10 51.6 4.5 42 265-306 2-43 (44)
192 PF12569 NARP1: NMDA receptor- 98.0 5.3E-05 1.2E-09 74.5 11.3 91 263-353 193-283 (517)
193 PF04733 Coatomer_E: Coatomer 98.0 3.1E-05 6.8E-10 70.9 9.0 113 218-348 137-251 (290)
194 PF14938 SNAP: Soluble NSF att 98.0 6.6E-05 1.4E-09 68.7 10.7 130 209-351 32-174 (282)
195 KOG1130 Predicted G-alpha GTPa 97.9 2.7E-05 5.9E-10 72.1 7.6 134 207-352 190-335 (639)
196 PRK14720 transcript cleavage f 97.9 7.1E-05 1.5E-09 77.4 11.4 114 211-343 115-268 (906)
197 KOG1174 Anaphase-promoting com 97.9 0.00022 4.9E-09 66.2 13.3 63 211-291 333-395 (564)
198 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 8.5E-05 1.8E-09 49.2 7.3 49 299-347 2-50 (53)
199 KOG4234 TPR repeat-containing 97.9 0.00011 2.5E-09 61.8 9.7 80 271-350 102-186 (271)
200 KOG0495 HAT repeat protein [RN 97.9 0.00022 4.7E-09 69.8 12.4 120 215-352 654-773 (913)
201 KOG4555 TPR repeat-containing 97.9 0.00039 8.4E-09 54.6 11.5 65 267-331 46-110 (175)
202 PF04733 Coatomer_E: Coatomer 97.9 9E-05 1.9E-09 67.9 9.5 93 227-337 182-275 (290)
203 KOG4151 Myosin assembly protei 97.8 6.9E-05 1.5E-09 74.7 9.0 129 203-345 44-174 (748)
204 COG1729 Uncharacterized protei 97.8 0.0002 4.4E-09 63.4 10.9 85 267-351 144-234 (262)
205 PF07719 TPR_2: Tetratricopept 97.8 4E-05 8.6E-10 45.7 4.4 33 265-297 2-34 (34)
206 KOG1130 Predicted G-alpha GTPa 97.8 7.3E-05 1.6E-09 69.3 8.0 107 210-328 233-345 (639)
207 PF15015 NYD-SP12_N: Spermatog 97.8 0.00031 6.7E-09 65.4 11.3 111 216-326 180-290 (569)
208 PF13512 TPR_18: Tetratricopep 97.8 0.00021 4.5E-09 57.5 8.9 70 264-333 10-82 (142)
209 KOG1127 TPR repeat-containing 97.8 0.00013 2.8E-09 74.3 9.3 114 212-343 562-675 (1238)
210 KOG3785 Uncharacterized conser 97.7 0.00019 4.1E-09 65.5 9.5 23 218-240 63-85 (557)
211 PRK10866 outer membrane biogen 97.7 0.0002 4.2E-09 64.0 9.6 79 263-341 31-115 (243)
212 KOG4642 Chaperone-dependent E3 97.7 7.4E-05 1.6E-09 64.6 6.0 81 271-351 17-97 (284)
213 KOG0495 HAT repeat protein [RN 97.7 0.00021 4.6E-09 69.8 9.8 86 264-349 651-736 (913)
214 PF13181 TPR_8: Tetratricopept 97.6 9E-05 2E-09 44.2 4.0 32 299-330 2-33 (34)
215 PRK10941 hypothetical protein; 97.6 0.00064 1.4E-08 61.3 11.1 81 262-342 179-259 (269)
216 KOG2796 Uncharacterized conser 97.5 0.0016 3.4E-08 57.4 11.6 121 213-345 213-336 (366)
217 KOG3785 Uncharacterized conser 97.5 0.00076 1.7E-08 61.6 10.0 87 221-324 31-117 (557)
218 PF13431 TPR_17: Tetratricopep 97.5 5.6E-05 1.2E-09 45.3 1.6 34 234-285 1-34 (34)
219 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00039 8.6E-09 59.4 7.0 81 260-340 61-141 (297)
220 PF12569 NARP1: NMDA receptor- 97.4 0.0015 3.3E-08 64.4 12.0 98 213-328 195-292 (517)
221 COG3071 HemY Uncharacterized e 97.4 0.0046 1E-07 57.4 13.7 126 208-351 80-206 (400)
222 KOG3364 Membrane protein invol 97.4 0.0048 1E-07 48.8 11.7 85 262-346 30-119 (149)
223 KOG2053 Mitochondrial inherita 97.4 0.0033 7.1E-08 63.8 13.5 116 221-355 18-133 (932)
224 KOG1586 Protein required for f 97.4 0.0099 2.1E-07 51.6 14.4 127 212-350 113-249 (288)
225 KOG4814 Uncharacterized conser 97.4 0.0019 4E-08 63.3 10.9 103 213-327 355-457 (872)
226 KOG1941 Acetylcholine receptor 97.3 0.00076 1.7E-08 61.8 7.7 103 214-328 124-236 (518)
227 COG2976 Uncharacterized protei 97.3 0.0071 1.5E-07 51.0 12.4 104 212-331 89-192 (207)
228 PF13181 TPR_8: Tetratricopept 97.3 0.00035 7.6E-09 41.5 3.6 33 265-297 2-34 (34)
229 KOG2376 Signal recognition par 97.3 0.0026 5.7E-08 61.7 11.1 91 216-327 83-204 (652)
230 PF09986 DUF2225: Uncharacteri 97.2 0.0066 1.4E-07 53.0 12.2 101 218-329 83-196 (214)
231 KOG0882 Cyclophilin-related pe 97.2 0.00046 1E-08 64.5 5.1 146 18-175 112-264 (558)
232 COG3118 Thioredoxin domain-con 97.2 0.01 2.2E-07 53.4 13.1 115 214-346 136-286 (304)
233 COG0457 NrfG FOG: TPR repeat [ 97.2 0.0096 2.1E-07 50.4 13.0 115 213-345 96-215 (291)
234 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0014 3.1E-08 43.3 5.7 42 265-306 2-43 (53)
235 PF10300 DUF3808: Protein of u 97.1 0.0041 9E-08 61.0 11.2 105 210-329 265-378 (468)
236 KOG3824 Huntingtin interacting 97.1 0.0026 5.7E-08 57.1 8.6 76 265-340 117-192 (472)
237 PF13174 TPR_6: Tetratricopept 97.1 0.00093 2E-08 39.2 4.0 31 300-330 2-32 (33)
238 COG0457 NrfG FOG: TPR repeat [ 97.1 0.014 3E-07 49.4 12.7 108 221-343 139-247 (291)
239 KOG4507 Uncharacterized conser 97.0 0.002 4.3E-08 62.5 7.3 108 219-343 614-721 (886)
240 KOG0376 Serine-threonine phosp 97.0 0.00099 2.1E-08 63.3 5.0 82 269-350 9-90 (476)
241 PLN03081 pentatricopeptide (PP 97.0 0.0055 1.2E-07 63.4 10.7 64 264-327 494-557 (697)
242 KOG1308 Hsp70-interacting prot 97.0 0.00031 6.7E-09 63.8 1.3 78 275-352 125-202 (377)
243 KOG1941 Acetylcholine receptor 96.9 0.0037 8E-08 57.4 8.1 122 218-351 49-181 (518)
244 KOG4340 Uncharacterized conser 96.9 0.016 3.4E-07 52.1 11.7 121 214-352 46-198 (459)
245 COG4105 ComL DNA uptake lipopr 96.9 0.0072 1.6E-07 53.3 9.5 71 263-333 33-106 (254)
246 PF13176 TPR_7: Tetratricopept 96.9 0.00067 1.4E-08 41.1 2.3 24 301-324 2-25 (36)
247 smart00028 TPR Tetratricopepti 96.9 0.0017 3.6E-08 37.0 3.9 31 300-330 3-33 (34)
248 PF13176 TPR_7: Tetratricopept 96.9 0.0019 4E-08 39.1 4.0 29 266-294 1-29 (36)
249 KOG3081 Vesicle coat complex C 96.9 0.024 5.1E-07 50.2 12.3 77 270-346 175-255 (299)
250 KOG2471 TPR repeat-containing 96.9 0.0023 5E-08 60.9 6.4 82 263-344 282-381 (696)
251 KOG4340 Uncharacterized conser 96.9 0.011 2.4E-07 53.1 10.1 85 222-324 20-104 (459)
252 PF06552 TOM20_plant: Plant sp 96.8 0.0088 1.9E-07 49.9 8.6 69 280-348 7-85 (186)
253 PF10602 RPN7: 26S proteasome 96.8 0.022 4.8E-07 48.2 11.2 101 211-326 35-141 (177)
254 PF13174 TPR_6: Tetratricopept 96.8 0.002 4.4E-08 37.7 3.5 32 266-297 2-33 (33)
255 PF05843 Suf: Suppressor of fo 96.7 0.016 3.4E-07 53.0 10.5 117 215-349 4-124 (280)
256 KOG1915 Cell cycle control pro 96.7 0.05 1.1E-06 52.0 13.6 124 215-358 76-199 (677)
257 PF04184 ST7: ST7 protein; In 96.7 0.018 4E-07 55.2 10.9 57 268-324 263-321 (539)
258 KOG0551 Hsp90 co-chaperone CNS 96.7 0.017 3.7E-07 52.6 10.1 100 212-349 119-218 (390)
259 KOG2610 Uncharacterized conser 96.6 0.033 7.1E-07 51.0 11.6 127 213-357 104-234 (491)
260 PRK04841 transcriptional regul 96.6 0.035 7.6E-07 59.2 14.1 102 215-328 494-603 (903)
261 PF03704 BTAD: Bacterial trans 96.6 0.072 1.5E-06 43.3 13.0 84 268-351 10-115 (146)
262 smart00028 TPR Tetratricopepti 96.6 0.0029 6.3E-08 35.9 3.5 33 265-297 2-34 (34)
263 PF04184 ST7: ST7 protein; In 96.6 0.026 5.7E-07 54.2 11.3 57 298-354 259-317 (539)
264 PLN03218 maturation of RBCL 1; 96.6 0.034 7.3E-07 59.8 13.6 96 215-328 510-609 (1060)
265 KOG1915 Cell cycle control pro 96.6 0.037 8.1E-07 52.8 12.1 113 224-351 378-490 (677)
266 KOG2376 Signal recognition par 96.6 0.02 4.4E-07 55.8 10.5 131 213-346 13-160 (652)
267 KOG2796 Uncharacterized conser 96.6 0.044 9.6E-07 48.5 11.6 122 214-352 179-306 (366)
268 PF14561 TPR_20: Tetratricopep 96.6 0.014 3.1E-07 43.3 7.5 67 283-349 7-75 (90)
269 PRK04841 transcriptional regul 96.6 0.044 9.6E-07 58.4 14.3 100 216-328 456-561 (903)
270 KOG2396 HAT (Half-A-TPR) repea 96.6 0.049 1.1E-06 52.3 12.7 101 228-346 87-188 (568)
271 PLN03218 maturation of RBCL 1; 96.5 0.039 8.4E-07 59.4 13.5 29 212-240 542-570 (1060)
272 COG4976 Predicted methyltransf 96.5 0.0043 9.4E-08 53.5 5.0 61 273-333 4-64 (287)
273 PLN03081 pentatricopeptide (PP 96.5 0.014 3.1E-07 60.4 9.4 112 212-326 290-419 (697)
274 COG2912 Uncharacterized conser 96.4 0.049 1.1E-06 48.6 11.4 82 259-340 176-257 (269)
275 COG3071 HemY Uncharacterized e 96.4 0.059 1.3E-06 50.2 12.1 113 216-350 267-379 (400)
276 KOG0545 Aryl-hydrocarbon recep 96.3 0.025 5.4E-07 49.5 8.7 82 263-344 177-276 (329)
277 KOG1585 Protein required for f 96.3 0.046 9.9E-07 47.9 10.2 130 216-359 114-249 (308)
278 PF08631 SPO22: Meiosis protei 96.3 0.45 9.8E-06 43.3 17.1 122 203-329 26-152 (278)
279 COG4700 Uncharacterized protei 96.2 0.13 2.7E-06 43.4 11.8 112 219-349 63-177 (251)
280 PF04781 DUF627: Protein of un 96.2 0.026 5.7E-07 43.2 7.2 103 218-328 2-108 (111)
281 TIGR03268 methan_mark_3 putati 96.0 0.03 6.5E-07 53.7 8.4 103 18-152 201-303 (503)
282 PLN03077 Protein ECB2; Provisi 96.0 0.064 1.4E-06 57.0 11.6 138 212-351 554-710 (857)
283 KOG3081 Vesicle coat complex C 96.0 0.067 1.5E-06 47.4 9.6 74 261-334 204-278 (299)
284 PRK00969 hypothetical protein; 95.9 0.034 7.3E-07 53.5 8.1 103 18-152 204-306 (508)
285 KOG1070 rRNA processing protei 95.9 0.12 2.5E-06 55.5 12.3 83 262-344 1562-1646(1710)
286 PLN03077 Protein ECB2; Provisi 95.8 0.096 2.1E-06 55.7 12.0 112 215-346 628-765 (857)
287 KOG4507 Uncharacterized conser 95.7 0.061 1.3E-06 52.6 8.9 124 216-355 216-343 (886)
288 PF10300 DUF3808: Protein of u 95.6 0.13 2.9E-06 50.5 11.3 92 226-335 247-342 (468)
289 KOG2471 TPR repeat-containing 95.6 0.02 4.4E-07 54.7 5.2 100 211-311 282-382 (696)
290 TIGR03268 methan_mark_3 putati 95.6 0.077 1.7E-06 51.0 9.0 115 18-152 375-495 (503)
291 KOG3824 Huntingtin interacting 95.5 0.029 6.2E-07 50.7 5.4 79 211-307 115-193 (472)
292 PRK10941 hypothetical protein; 95.4 0.081 1.7E-06 47.8 8.3 79 212-308 181-259 (269)
293 PF13374 TPR_10: Tetratricopep 95.4 0.03 6.4E-07 34.5 4.0 29 265-293 3-31 (42)
294 COG4070 Predicted peptidyl-pro 95.3 0.054 1.2E-06 50.2 6.9 104 17-152 202-305 (512)
295 PF12862 Apc5: Anaphase-promot 95.2 0.12 2.7E-06 38.6 7.5 65 222-295 8-72 (94)
296 PF05843 Suf: Suppressor of fo 95.1 0.52 1.1E-05 43.0 12.9 104 215-336 38-145 (280)
297 KOG1586 Protein required for f 95.1 1.2 2.6E-05 39.0 13.9 106 213-331 35-147 (288)
298 PF08631 SPO22: Meiosis protei 95.1 1.1 2.5E-05 40.7 15.0 106 222-337 3-126 (278)
299 PF10579 Rapsyn_N: Rapsyn N-te 95.1 0.12 2.7E-06 36.9 6.6 68 211-293 5-72 (80)
300 PF10516 SHNi-TPR: SHNi-TPR; 94.9 0.056 1.2E-06 33.0 3.9 29 299-327 2-30 (38)
301 KOG1585 Protein required for f 94.8 0.95 2.1E-05 39.9 12.7 54 270-323 116-175 (308)
302 COG4976 Predicted methyltransf 94.8 0.043 9.3E-07 47.6 4.5 60 220-297 3-62 (287)
303 PF13374 TPR_10: Tetratricopep 94.8 0.069 1.5E-06 32.8 4.3 30 298-327 2-31 (42)
304 PRK13184 pknD serine/threonine 94.6 0.33 7E-06 51.4 11.2 117 218-350 481-604 (932)
305 COG3629 DnrI DNA-binding trans 94.6 0.28 6E-06 44.4 9.3 70 258-327 147-216 (280)
306 PRK00969 hypothetical protein; 94.6 0.2 4.3E-06 48.4 8.7 114 18-152 378-497 (508)
307 PF10952 DUF2753: Protein of u 94.6 0.28 6.1E-06 38.2 7.9 117 213-339 2-123 (140)
308 KOG1070 rRNA processing protei 94.5 0.47 1E-05 51.1 11.8 86 265-350 1531-1618(1710)
309 PF09613 HrpB1_HrpK: Bacterial 94.4 0.64 1.4E-05 38.3 10.3 87 261-347 7-93 (160)
310 PF14561 TPR_20: Tetratricopep 94.4 0.41 8.9E-06 35.5 8.5 55 259-313 17-73 (90)
311 PF09613 HrpB1_HrpK: Bacterial 94.3 2 4.2E-05 35.5 12.9 112 212-343 10-121 (160)
312 KOG2300 Uncharacterized conser 94.3 1.9 4E-05 41.8 14.3 100 210-328 365-475 (629)
313 KOG4814 Uncharacterized conser 94.3 0.75 1.6E-05 45.8 12.0 76 265-340 355-436 (872)
314 PF09986 DUF2225: Uncharacteri 94.3 0.32 6.9E-06 42.5 8.8 88 207-306 120-208 (214)
315 KOG0686 COP9 signalosome, subu 94.3 0.29 6.3E-06 46.0 8.8 114 213-341 151-280 (466)
316 PF04910 Tcf25: Transcriptiona 94.2 0.31 6.7E-06 46.1 9.2 102 225-333 7-139 (360)
317 PF07720 TPR_3: Tetratricopept 93.8 0.21 4.5E-06 30.1 4.7 33 299-331 2-36 (36)
318 KOG2610 Uncharacterized conser 93.8 0.16 3.5E-06 46.6 6.0 95 215-323 140-234 (491)
319 PF02259 FAT: FAT domain; Int 93.5 1.1 2.3E-05 42.0 11.6 117 214-330 186-341 (352)
320 COG3947 Response regulator con 93.2 0.6 1.3E-05 42.1 8.5 69 258-326 273-341 (361)
321 PF12862 Apc5: Anaphase-promot 93.1 0.43 9.4E-06 35.6 6.7 57 274-330 8-73 (94)
322 KOG1550 Extracellular protein 93.1 0.98 2.1E-05 45.4 11.1 103 215-341 291-405 (552)
323 KOG2053 Mitochondrial inherita 93.1 0.48 1E-05 48.7 8.7 110 217-345 48-158 (932)
324 PF02259 FAT: FAT domain; Int 93.0 1.7 3.7E-05 40.5 12.2 126 211-350 145-310 (352)
325 COG5191 Uncharacterized conser 93.0 0.22 4.7E-06 45.3 5.5 83 260-342 103-186 (435)
326 PF10602 RPN7: 26S proteasome 92.8 5.3 0.00011 33.7 14.2 69 260-328 32-103 (177)
327 COG0790 FOG: TPR repeat, SEL1 92.7 2.6 5.7E-05 38.3 12.7 106 212-339 109-230 (292)
328 COG2976 Uncharacterized protei 92.7 2.3 4.9E-05 36.3 10.8 103 219-324 38-152 (207)
329 COG4070 Predicted peptidyl-pro 92.6 0.34 7.3E-06 45.1 6.4 111 19-152 377-498 (512)
330 PF08424 NRDE-2: NRDE-2, neces 92.6 4.2 9.1E-05 37.9 13.9 86 259-344 14-111 (321)
331 PF12968 DUF3856: Domain of Un 92.3 1.5 3.3E-05 34.2 8.6 74 212-292 55-128 (144)
332 PF06957 COPI_C: Coatomer (COP 92.2 1.4 2.9E-05 42.4 10.2 121 210-333 202-335 (422)
333 PF13281 DUF4071: Domain of un 92.1 2.5 5.4E-05 40.0 11.6 111 216-343 183-350 (374)
334 KOG0530 Protein farnesyltransf 92.0 5 0.00011 35.9 12.5 110 224-351 55-166 (318)
335 PF10516 SHNi-TPR: SHNi-TPR; 91.8 0.23 4.9E-06 30.3 3.0 30 265-294 2-31 (38)
336 PF07079 DUF1347: Protein of u 91.7 5.7 0.00012 38.3 13.3 71 271-345 469-543 (549)
337 KOG3364 Membrane protein invol 91.1 0.83 1.8E-05 36.4 6.1 43 263-305 70-112 (149)
338 KOG2047 mRNA splicing factor [ 91.0 3.9 8.5E-05 41.0 12.0 118 211-328 424-541 (835)
339 COG3914 Spy Predicted O-linked 91.0 1.7 3.8E-05 42.9 9.5 103 224-344 79-188 (620)
340 KOG3617 WD40 and TPR repeat-co 90.9 5.5 0.00012 41.2 13.0 90 264-353 858-988 (1416)
341 COG3898 Uncharacterized membra 90.8 3.7 7.9E-05 38.8 11.0 96 213-326 121-216 (531)
342 KOG1839 Uncharacterized protei 90.8 1.5 3.2E-05 47.3 9.5 126 210-346 930-1071(1236)
343 PF10373 EST1_DNA_bind: Est1 D 90.8 0.98 2.1E-05 40.7 7.5 62 283-344 1-62 (278)
344 PHA02537 M terminase endonucle 90.8 4 8.7E-05 35.9 10.8 118 223-347 94-226 (230)
345 PF04781 DUF627: Protein of un 90.7 4.5 9.7E-05 31.1 9.7 85 270-354 2-100 (111)
346 PF07721 TPR_4: Tetratricopept 90.7 0.39 8.4E-06 26.4 3.0 23 300-322 3-25 (26)
347 TIGR02561 HrpB1_HrpK type III 90.3 4.1 8.8E-05 33.2 9.6 87 262-348 8-94 (153)
348 KOG1310 WD40 repeat protein [G 90.1 1.2 2.7E-05 43.4 7.5 76 277-352 387-465 (758)
349 cd02681 MIT_calpain7_1 MIT: do 90.0 1.8 3.9E-05 30.9 6.6 35 210-244 4-38 (76)
350 PF04212 MIT: MIT (microtubule 89.7 1.9 4.1E-05 30.0 6.6 36 210-245 3-38 (69)
351 COG2909 MalT ATP-dependent tra 89.7 18 0.0004 37.7 15.8 108 212-328 415-527 (894)
352 TIGR03504 FimV_Cterm FimV C-te 89.6 1.2 2.7E-05 28.1 4.9 26 301-326 2-27 (44)
353 KOG0529 Protein geranylgeranyl 89.0 7.5 0.00016 36.9 11.7 106 221-344 84-195 (421)
354 PF10255 Paf67: RNA polymerase 88.7 0.91 2E-05 43.4 5.6 60 267-326 125-192 (404)
355 COG2912 Uncharacterized conser 88.6 1.1 2.3E-05 40.2 5.6 75 215-307 184-258 (269)
356 COG4455 ImpE Protein of avirul 88.5 4.4 9.6E-05 35.2 9.0 68 273-340 10-77 (273)
357 PF10345 Cohesin_load: Cohesin 88.5 13 0.00027 38.0 14.2 121 212-332 301-446 (608)
358 KOG1550 Extracellular protein 88.5 3.9 8.5E-05 41.2 10.4 116 212-344 244-372 (552)
359 PF10345 Cohesin_load: Cohesin 88.4 14 0.0003 37.8 14.5 121 211-344 58-187 (608)
360 PF07720 TPR_3: Tetratricopept 88.2 1.4 3.1E-05 26.4 4.4 33 265-297 2-36 (36)
361 PF07079 DUF1347: Protein of u 87.7 2.4 5.2E-05 40.7 7.6 60 212-290 462-521 (549)
362 PF11817 Foie-gras_1: Foie gra 87.5 2.7 5.9E-05 37.5 7.8 62 261-322 175-242 (247)
363 COG3118 Thioredoxin domain-con 87.4 4.7 0.0001 36.7 8.9 53 271-323 141-193 (304)
364 PF10373 EST1_DNA_bind: Est1 D 87.2 1.7 3.6E-05 39.2 6.4 62 231-310 1-62 (278)
365 PF10255 Paf67: RNA polymerase 87.1 2.1 4.4E-05 41.0 7.0 133 218-360 128-264 (404)
366 cd02683 MIT_1 MIT: domain cont 87.0 3.8 8.2E-05 29.4 6.7 35 211-245 5-39 (77)
367 KOG0530 Protein farnesyltransf 87.0 6.8 0.00015 35.1 9.5 89 272-360 51-140 (318)
368 PF15015 NYD-SP12_N: Spermatog 86.9 6.7 0.00015 37.4 9.9 79 277-355 196-285 (569)
369 PF12903 DUF3830: Protein of u 86.9 2.7 5.8E-05 34.1 6.5 106 18-151 8-129 (147)
370 PF04910 Tcf25: Transcriptiona 86.9 22 0.00047 33.8 13.7 115 212-326 40-167 (360)
371 KOG2422 Uncharacterized conser 86.8 12 0.00025 37.2 11.8 119 216-340 239-385 (665)
372 COG3914 Spy Predicted O-linked 86.7 5.6 0.00012 39.5 9.7 69 270-338 73-142 (620)
373 PF11817 Foie-gras_1: Foie gra 86.5 7.5 0.00016 34.7 10.0 52 298-349 178-235 (247)
374 PF14863 Alkyl_sulf_dimr: Alky 86.1 4.5 9.8E-05 32.7 7.5 48 299-346 71-118 (141)
375 cd02678 MIT_VPS4 MIT: domain c 86.1 4.2 9E-05 28.9 6.6 37 209-245 3-39 (75)
376 COG0790 FOG: TPR repeat, SEL1 85.7 16 0.00034 33.2 12.0 81 228-331 171-270 (292)
377 PF07721 TPR_4: Tetratricopept 85.6 1.1 2.4E-05 24.5 2.7 24 265-288 2-25 (26)
378 TIGR02561 HrpB1_HrpK type III 85.6 6.1 0.00013 32.2 7.9 81 217-315 15-95 (153)
379 cd02677 MIT_SNX15 MIT: domain 85.5 4.8 0.0001 28.7 6.6 36 210-245 4-39 (75)
380 PF13281 DUF4071: Domain of un 85.4 30 0.00065 32.9 13.7 86 262-347 139-232 (374)
381 KOG2047 mRNA splicing factor [ 85.2 26 0.00057 35.5 13.4 114 215-346 480-600 (835)
382 smart00745 MIT Microtubule Int 84.8 6.4 0.00014 27.9 7.1 38 209-246 5-42 (77)
383 KOG1497 COP9 signalosome, subu 84.7 29 0.00064 32.0 12.6 99 259-358 98-206 (399)
384 cd02684 MIT_2 MIT: domain cont 84.6 3.1 6.8E-05 29.6 5.3 37 209-245 3-39 (75)
385 cd02682 MIT_AAA_Arch MIT: doma 84.6 8.7 0.00019 27.4 7.4 32 211-242 5-36 (75)
386 cd02680 MIT_calpain7_2 MIT: do 84.4 1.8 3.8E-05 30.9 3.9 35 210-244 4-38 (75)
387 PF10579 Rapsyn_N: Rapsyn N-te 84.1 8 0.00017 27.8 7.1 58 270-327 12-72 (80)
388 KOG0529 Protein geranylgeranyl 84.1 16 0.00034 34.8 11.0 90 259-348 58-161 (421)
389 KOG3617 WD40 and TPR repeat-co 83.7 4 8.6E-05 42.2 7.3 63 265-327 913-996 (1416)
390 cd02679 MIT_spastin MIT: domai 83.4 8.6 0.00019 27.7 7.1 41 209-249 5-45 (79)
391 KOG1839 Uncharacterized protei 83.3 8 0.00017 42.0 9.7 108 211-328 972-1087(1236)
392 cd02682 MIT_AAA_Arch MIT: doma 82.9 6.2 0.00014 28.1 6.2 26 266-291 8-33 (75)
393 KOG2114 Vacuolar assembly/sort 82.8 3.1 6.7E-05 42.9 6.2 33 211-243 367-399 (933)
394 KOG0292 Vesicle coat complex C 82.2 17 0.00036 38.1 11.0 123 209-334 988-1120(1202)
395 COG5191 Uncharacterized conser 82.0 1.2 2.6E-05 40.7 2.8 74 212-303 107-181 (435)
396 smart00386 HAT HAT (Half-A-TPR 82.0 3.7 8E-05 23.0 4.2 30 312-341 1-30 (33)
397 TIGR03504 FimV_Cterm FimV C-te 81.8 2.7 5.8E-05 26.5 3.6 27 268-294 3-29 (44)
398 cd02656 MIT MIT: domain contai 81.7 5.7 0.00012 28.1 5.8 36 210-245 4-39 (75)
399 PF14863 Alkyl_sulf_dimr: Alky 79.8 5 0.00011 32.5 5.4 50 266-315 72-121 (141)
400 KOG1463 26S proteasome regulat 79.4 40 0.00087 31.5 11.5 123 212-347 209-333 (411)
401 KOG0985 Vesicle coat protein c 79.4 15 0.00033 39.1 9.8 106 215-346 1197-1327(1666)
402 KOG2041 WD40 repeat protein [G 78.4 10 0.00022 38.6 8.0 26 213-238 797-822 (1189)
403 PF09670 Cas_Cas02710: CRISPR- 78.4 31 0.00066 33.0 11.2 65 212-292 131-197 (379)
404 KOG2581 26S proteasome regulat 78.0 38 0.00083 32.3 11.2 70 264-333 209-282 (493)
405 PF11207 DUF2989: Protein of u 78.0 8.5 0.00018 33.0 6.5 70 280-350 122-196 (203)
406 PRK15180 Vi polysaccharide bio 77.8 10 0.00022 36.9 7.6 84 219-320 296-379 (831)
407 KOG2396 HAT (Half-A-TPR) repea 77.5 6.4 0.00014 38.3 6.2 66 219-302 112-178 (568)
408 PF11846 DUF3366: Domain of un 77.4 12 0.00026 31.8 7.5 52 279-331 126-177 (193)
409 COG3898 Uncharacterized membra 76.8 72 0.0016 30.5 13.0 118 212-345 84-201 (531)
410 KOG0546 HSP90 co-chaperone CPR 76.6 1.2 2.6E-05 41.2 1.1 81 216-314 279-359 (372)
411 KOG2300 Uncharacterized conser 76.5 82 0.0018 31.0 13.5 102 224-329 287-398 (629)
412 PF08424 NRDE-2: NRDE-2, neces 75.8 61 0.0013 30.1 12.3 85 225-327 44-131 (321)
413 COG4455 ImpE Protein of avirul 75.8 45 0.00097 29.3 10.2 93 220-330 9-118 (273)
414 PF00244 14-3-3: 14-3-3 protei 73.5 10 0.00022 33.6 6.2 54 228-291 142-196 (236)
415 TIGR02710 CRISPR-associated pr 73.1 59 0.0013 31.0 11.4 62 214-288 132-195 (380)
416 COG3629 DnrI DNA-binding trans 72.7 9.8 0.00021 34.6 5.9 64 212-293 153-216 (280)
417 PF04053 Coatomer_WDAD: Coatom 72.1 23 0.00051 34.5 8.8 28 264-291 347-374 (443)
418 PF10952 DUF2753: Protein of u 71.9 18 0.00038 28.5 6.2 80 267-346 4-107 (140)
419 KOG3783 Uncharacterized conser 71.6 24 0.00053 34.8 8.5 97 211-324 266-372 (546)
420 KOG4014 Uncharacterized conser 71.2 43 0.00094 28.5 8.8 104 214-341 70-209 (248)
421 COG3947 Response regulator con 71.0 18 0.00039 33.0 7.0 50 298-347 279-328 (361)
422 KOG4459 Membrane-associated pr 68.6 26 0.00056 33.8 7.9 120 214-343 33-178 (471)
423 COG4941 Predicted RNA polymera 68.5 26 0.00057 32.6 7.6 77 265-341 330-408 (415)
424 KOG3783 Uncharacterized conser 68.3 56 0.0012 32.4 10.2 69 264-332 449-525 (546)
425 PF09205 DUF1955: Domain of un 68.2 46 0.00099 26.8 7.9 61 267-327 88-149 (161)
426 PRK13184 pknD serine/threonine 68.1 44 0.00095 35.9 10.3 68 264-333 552-626 (932)
427 COG4649 Uncharacterized protei 67.6 76 0.0016 26.9 11.8 111 213-338 95-206 (221)
428 COG5091 SGT1 Suppressor of G2 66.9 9.3 0.0002 34.2 4.3 55 277-331 52-112 (368)
429 cd09240 BRO1_Alix Protein-inte 66.6 1.2E+02 0.0025 28.6 12.3 120 207-326 114-283 (346)
430 smart00386 HAT HAT (Half-A-TPR 65.7 13 0.00028 20.6 3.6 29 278-306 1-29 (33)
431 KOG3807 Predicted membrane pro 65.7 1.1E+02 0.0025 28.5 11.1 28 302-329 279-306 (556)
432 PF15469 Sec5: Exocyst complex 65.5 13 0.00029 31.3 5.0 21 222-242 96-116 (182)
433 KOG1464 COP9 signalosome, subu 64.7 32 0.00069 31.1 7.2 107 212-327 65-174 (440)
434 KOG2561 Adaptor protein NUB1, 63.3 50 0.0011 31.9 8.6 109 211-326 162-295 (568)
435 PF08238 Sel1: Sel1 repeat; I 63.0 17 0.00036 21.4 3.9 29 299-327 2-37 (39)
436 KOG1914 mRNA cleavage and poly 62.8 46 0.00099 33.1 8.4 83 254-338 10-92 (656)
437 smart00671 SEL1 Sel1-like repe 62.5 21 0.00045 20.5 4.2 29 299-327 2-34 (36)
438 KOG0985 Vesicle coat protein c 62.2 1.3E+02 0.0029 32.5 12.0 103 218-327 1054-1162(1666)
439 smart00745 MIT Microtubule Int 62.2 37 0.0008 23.9 6.2 14 317-330 34-47 (77)
440 KOG1914 mRNA cleavage and poly 62.1 62 0.0013 32.2 9.1 67 288-355 10-76 (656)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 61.8 77 0.0017 24.9 8.5 61 259-325 64-126 (126)
442 PF12854 PPR_1: PPR repeat 61.8 22 0.00047 20.7 4.0 27 297-323 6-32 (34)
443 KOG2041 WD40 repeat protein [G 61.4 62 0.0013 33.3 9.2 63 259-321 791-875 (1189)
444 KOG3616 Selective LIM binding 61.2 30 0.00066 35.6 7.1 46 277-323 745-790 (1636)
445 cd02680 MIT_calpain7_2 MIT: do 59.2 19 0.00042 25.6 4.0 18 310-327 18-35 (75)
446 PRK15180 Vi polysaccharide bio 58.7 84 0.0018 30.9 9.3 65 282-346 760-824 (831)
447 PF04190 DUF410: Protein of un 58.1 1.4E+02 0.003 26.8 10.5 96 212-321 10-113 (260)
448 PF12652 CotJB: CotJB protein; 58.1 48 0.001 23.8 5.9 50 307-356 4-53 (78)
449 PF07219 HemY_N: HemY protein 57.9 28 0.0006 26.6 5.1 33 208-240 55-87 (108)
450 COG4649 Uncharacterized protei 57.3 38 0.00083 28.6 6.0 77 217-311 137-213 (221)
451 KOG0739 AAA+-type ATPase [Post 56.6 46 0.001 30.7 6.9 37 209-245 7-43 (439)
452 PF01239 PPTA: Protein prenylt 56.1 27 0.00058 19.7 3.7 26 284-309 3-28 (31)
453 cd09239 BRO1_HD-PTP_like Prote 54.6 2E+02 0.0042 27.3 13.0 119 207-326 109-280 (361)
454 cd02683 MIT_1 MIT: domain cont 54.5 76 0.0017 22.6 7.2 16 316-331 31-46 (77)
455 COG2909 MalT ATP-dependent tra 53.6 81 0.0018 33.3 8.9 84 218-314 464-553 (894)
456 PF08969 USP8_dimer: USP8 dime 53.6 38 0.00082 26.1 5.3 49 202-251 28-76 (115)
457 KOG1464 COP9 signalosome, subu 53.5 43 0.00093 30.3 6.1 50 276-325 39-92 (440)
458 PF04053 Coatomer_WDAD: Coatom 53.4 55 0.0012 32.0 7.5 49 273-326 327-375 (443)
459 smart00101 14_3_3 14-3-3 homol 52.7 45 0.00097 29.7 6.2 54 228-291 144-198 (244)
460 cd02656 MIT MIT: domain contai 52.6 46 0.00099 23.3 5.2 13 312-324 20-32 (75)
461 PF01535 PPR: PPR repeat; Int 52.4 26 0.00057 19.0 3.3 23 268-290 4-26 (31)
462 KOG0276 Vesicle coat complex C 52.0 79 0.0017 32.0 8.1 29 212-240 666-694 (794)
463 PF03097 BRO1: BRO1-like domai 51.5 1.2E+02 0.0026 28.8 9.5 118 207-326 102-267 (377)
464 cd02681 MIT_calpain7_1 MIT: do 50.2 31 0.00067 24.6 3.9 24 304-327 12-35 (76)
465 cd09241 BRO1_ScRim20-like Prot 50.1 1.9E+02 0.0041 27.3 10.5 120 207-326 101-265 (355)
466 KOG1258 mRNA processing protei 50.0 2.9E+02 0.0062 27.9 14.1 101 213-331 298-399 (577)
467 PF11207 DUF2989: Protein of u 50.0 1.7E+02 0.0037 25.3 13.7 55 263-318 140-198 (203)
468 PF12739 TRAPPC-Trs85: ER-Golg 49.3 2.3E+02 0.0049 27.4 11.1 102 214-327 210-329 (414)
469 PF10938 YfdX: YfdX protein; 49.1 1.5E+02 0.0032 24.3 8.7 111 216-326 6-145 (155)
470 PRK11619 lytic murein transgly 48.7 86 0.0019 32.4 8.4 54 273-326 321-374 (644)
471 cd09034 BRO1_Alix_like Protein 48.6 2.3E+02 0.005 26.4 11.8 122 206-327 105-280 (345)
472 COG5159 RPN6 26S proteasome re 46.9 2.3E+02 0.0051 26.0 12.2 58 216-283 7-64 (421)
473 KOG4563 Cell cycle-regulated h 46.3 71 0.0015 30.1 6.5 67 208-284 37-103 (400)
474 TIGR00756 PPR pentatricopeptid 46.0 49 0.0011 18.3 3.9 26 301-326 3-28 (35)
475 PF08626 TRAPPC9-Trs120: Trans 46.0 3.5E+02 0.0076 30.3 13.1 35 209-243 239-273 (1185)
476 PF04010 DUF357: Protein of un 45.9 36 0.00078 24.2 3.7 39 202-240 25-63 (75)
477 cd09243 BRO1_Brox_like Protein 45.8 2.7E+02 0.0058 26.4 11.3 121 206-326 103-276 (353)
478 cd07603 BAR_ACAPs The Bin/Amph 45.0 1.9E+02 0.0042 24.8 8.8 110 207-327 13-123 (200)
479 PF07163 Pex26: Pex26 protein; 44.6 2.5E+02 0.0054 25.7 11.2 111 218-333 41-152 (309)
480 cd00280 TRFH Telomeric Repeat 44.4 1.9E+02 0.0041 24.7 8.2 48 268-316 115-162 (200)
481 PF07219 HemY_N: HemY protein 44.2 1.2E+02 0.0026 23.0 6.7 46 267-312 62-107 (108)
482 PF05053 Menin: Menin; InterP 43.6 31 0.00068 34.3 4.1 29 262-290 316-344 (618)
483 PF02184 HAT: HAT (Half-A-TPR) 42.4 53 0.0012 19.1 3.3 16 314-329 3-18 (32)
484 PF04212 MIT: MIT (microtubule 42.1 1.1E+02 0.0024 20.9 8.5 24 303-326 10-33 (69)
485 PF13041 PPR_2: PPR repeat fam 42.1 86 0.0019 19.6 5.6 26 267-292 6-31 (50)
486 KOG0890 Protein kinase of the 42.1 1.6E+02 0.0035 34.8 9.5 109 211-339 1669-1796(2382)
487 PF12753 Nro1: Nuclear pore co 41.9 28 0.00061 33.1 3.4 32 296-327 348-391 (404)
488 KOG0687 26S proteasome regulat 41.1 2.8E+02 0.006 26.0 9.4 102 211-326 103-209 (393)
489 cd02677 MIT_SNX15 MIT: domain 40.7 1.3E+02 0.0028 21.3 7.0 15 312-326 20-34 (75)
490 KOG2114 Vacuolar assembly/sort 40.5 1.7E+02 0.0037 30.8 8.8 61 219-297 341-402 (933)
491 KOG4014 Uncharacterized conser 40.2 1.7E+02 0.0037 25.1 7.3 49 277-327 181-233 (248)
492 PF09205 DUF1955: Domain of un 40.2 1.4E+02 0.003 24.1 6.4 35 260-294 116-150 (161)
493 PF13812 PPR_3: Pentatricopept 39.6 68 0.0015 17.7 4.0 25 267-291 4-28 (34)
494 COG5187 RPN7 26S proteasome re 39.1 2.8E+02 0.006 25.6 8.9 102 211-326 114-220 (412)
495 PRK15326 type III secretion sy 38.6 1.5E+02 0.0032 21.4 6.0 28 317-344 26-53 (80)
496 KOG0687 26S proteasome regulat 38.6 1.7E+02 0.0036 27.4 7.6 29 298-326 104-132 (393)
497 KOG0890 Protein kinase of the 38.3 6.1E+02 0.013 30.4 13.2 68 259-328 1665-1732(2382)
498 cd02679 MIT_spastin MIT: domai 37.9 1.5E+02 0.0033 21.3 8.2 45 310-354 20-74 (79)
499 PF05053 Menin: Menin; InterP 37.6 2.4E+02 0.0051 28.5 8.9 64 283-346 298-372 (618)
500 PF09797 NatB_MDM20: N-acetylt 37.1 1.9E+02 0.0041 27.3 8.3 46 278-323 197-242 (365)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-85 Score=578.50 Aligned_cols=358 Identities=54% Similarity=0.822 Sum_probs=333.2
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
||+|||||+|+|++.|||+||||.|+||+||+||+.||+|.+|.+..+|++|+|+|+.|||||++|||||||++.++|+|
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG 87 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG 87 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence 79999999999999999999999999999999999999999997778999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
|.||||.+|+||||.++|+++++|||||.||||||||||||+.+.|||||+|+|||+||.|++||+.|+++.++....|.
T Consensus 88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cceEeccccccCCC----CCCCCCCCCCCCCCCCCCCCCcCCC-CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHH
Q 018089 163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQT-PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK 237 (361)
Q Consensus 163 ~~v~I~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~ 237 (361)
.+|.|.+||++... ..+.+...+..++.++++|+++..+ ..+.....+.++..++.|+..+++++|..|...|.+
T Consensus 168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k 247 (372)
T KOG0546|consen 168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK 247 (372)
T ss_pred cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence 99999999999877 5677777888999999999776553 455667778889999999999999999999999999
Q ss_pred HHHhhhhccccCCCCccc--hhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHH
Q 018089 238 ALRYLDICWEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315 (361)
Q Consensus 238 al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~ 315 (361)
++++... .+.....+.. ...+......++.|++.|-++++.+..|+..+..+++.++...+++|++++++..+.+++
T Consensus 248 ~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~ 326 (372)
T KOG0546|consen 248 ALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD 326 (372)
T ss_pred Hhhhhcc-cccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh
Confidence 9999876 3332222222 244667778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089 316 AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361 (361)
Q Consensus 316 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 361 (361)
+|+++++.+....|++..+...+...++...++++.+++.+.+||+
T Consensus 327 ~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 327 EALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred hhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999995
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-57 Score=367.02 Aligned_cols=169 Identities=63% Similarity=1.074 Sum_probs=161.0
Q ss_pred CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhc-CCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~-~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
.+|||||.+++++.|||+|.||+..+|+||+||++||. +.++.| |.|++||||||+|||||||++.++|+|
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence 38999999999999999999999999999999999999 665554 999999999999999999999999999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
+.||||++|+|||+.|+|++||+|||||.|||||||||||++...|||||+|+|||||++||+++.+|++..++..+.|.
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeccccccCCCCCCC
Q 018089 163 ADVTITDCGEIPEGADDG 180 (361)
Q Consensus 163 ~~v~I~~~~~~~~~~~~~ 180 (361)
.++.|.+|+.+.......
T Consensus 192 e~v~I~~~g~l~~~~~~~ 209 (217)
T KOG0880|consen 192 EDVVIANCGELPVEYLES 209 (217)
T ss_pred ccEEEeecCcccccchhh
Confidence 999999999986654333
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-54 Score=329.91 Aligned_cols=167 Identities=58% Similarity=0.995 Sum_probs=161.6
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
||.|||||+|+|.++|||.||||.+++|+|++||++.|+++- +.+|++.-|+++.|||||++|||||||+..++|+|
T Consensus 10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~---r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY---RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc---ccCCccccccccchHHHhhhheeccCceecCCCce
Confidence 899999999999999999999999999999999999999862 13688899999999999999999999999999999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
..||||.+|+|||+.++|.+||+|||||+|++|+|+|||||..+..+||++|+|||+|++|+.++++|+++++..+..|.
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeccccc
Q 018089 163 ADVTITDCGE 172 (361)
Q Consensus 163 ~~v~I~~~~~ 172 (361)
.+|.|..|+.
T Consensus 167 l~v~i~qCGe 176 (177)
T KOG0879|consen 167 LPVVIVQCGE 176 (177)
T ss_pred CcEEEeeccc
Confidence 9999999985
No 4
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-50 Score=328.37 Aligned_cols=164 Identities=59% Similarity=1.015 Sum_probs=159.8
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.+|.||+++.|++...|||+++|..+..|+|++||+.||.+.+|+| |+|+.||||||.||+||||++.++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 67999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
+||.||||.+|.|||+.|+|..+|+|||||+|+|++||||||++....|||++|+|||.|++|+++++++++..+.+ +.
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk 284 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK 284 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877 89
Q ss_pred cccceEecccccc
Q 018089 161 PIADVTITDCGEI 173 (361)
Q Consensus 161 P~~~v~I~~~~~~ 173 (361)
|...|.|.+|+.+
T Consensus 285 p~qkv~i~~cge~ 297 (298)
T KOG0111|consen 285 PQQKVKIVECGEI 297 (298)
T ss_pred cceEEEEEecccc
Confidence 9999999999875
No 5
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=4.1e-47 Score=330.86 Aligned_cols=175 Identities=38% Similarity=0.625 Sum_probs=159.6
Q ss_pred CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecC-ceEEeCcCCCCCC
Q 018089 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG-FMIQGGDISAGDG 80 (361)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~-~~iq~G~~~~~~~ 80 (361)
++|+|||||+|++.+.|+|+||||.+.||+||+||++||++.++.+...|..++|+|+.||||+++ |+|||||+..
T Consensus 51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~--- 127 (249)
T PTZ00221 51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS--- 127 (249)
T ss_pred CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence 478999999999999999999999999999999999999988776554566667999999999986 8999999763
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
++.+++|.+|+||++.++|+++|+|+|++.+||++||||||++.+.|+||++|+|||+|++||++|++|++++++..+.
T Consensus 128 -~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~gr 206 (249)
T PTZ00221 128 -FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGR 206 (249)
T ss_pred -CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence 2457889999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred cccceEeccccccCCCCCCC
Q 018089 161 PIADVTITDCGEIPEGADDG 180 (361)
Q Consensus 161 P~~~v~I~~~~~~~~~~~~~ 180 (361)
|..+|+|.+|+++..+.+..
T Consensus 207 P~~~V~I~~Cgvl~~~~p~~ 226 (249)
T PTZ00221 207 PLLPVTVSFCGALTGEKPPG 226 (249)
T ss_pred CCCCeEEEECeEecCCCCCc
Confidence 99999999999997664443
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-49 Score=294.32 Aligned_cols=153 Identities=54% Similarity=0.853 Sum_probs=145.2
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
.|.|+|+++ +|.|++|||-..||+||.||..|++.+ ||+|+.|||||++|||||||++ ++|.|
T Consensus 9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG 71 (164)
T KOG0881|consen 9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG 71 (164)
T ss_pred CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence 578888877 899999999999999999999999987 9999999999999999999988 78999
Q ss_pred CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
|.||||.+|+||- .+|+|...|+|||||.|||+|||||||++.+.++|||+|++||+|..||+++..+-.+.+++.++|
T Consensus 72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP 151 (164)
T KOG0881|consen 72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP 151 (164)
T ss_pred ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence 9999999999995 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEeccccc
Q 018089 162 IADVTITDCGE 172 (361)
Q Consensus 162 ~~~v~I~~~~~ 172 (361)
..++.|.....
T Consensus 152 i~~~kIika~~ 162 (164)
T KOG0881|consen 152 IDEVKIIKAYP 162 (164)
T ss_pred ccceeeEeeec
Confidence 99999977643
No 7
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=2.8e-46 Score=312.51 Aligned_cols=164 Identities=67% Similarity=1.132 Sum_probs=152.9
Q ss_pred CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG 83 (361)
Q Consensus 4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (361)
|+||||+.|+|++.|+|+||||.+.||+||+||++||++.++.+. +..+|+|+.||||+|+|+|||||+..++|+++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 789999999999999999999999999999999999987544221 33489999999999999999999887788999
Q ss_pred CccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCccc
Q 018089 84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA 163 (361)
Q Consensus 84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~ 163 (361)
.++||.+|++|+..++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||++++|++++++ ++.|..
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~ 156 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK 156 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence 9999999999998999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred ceEecccc
Q 018089 164 DVTITDCG 171 (361)
Q Consensus 164 ~v~I~~~~ 171 (361)
+|+|.+|+
T Consensus 157 ~i~I~~cG 164 (164)
T cd01926 157 KVVIADCG 164 (164)
T ss_pred CeEEEECC
Confidence 99999986
No 8
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2e-46 Score=317.73 Aligned_cols=170 Identities=59% Similarity=0.970 Sum_probs=156.6
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.+|.|||||++++++.|+|+||||.+.+|+||+||++||+++... .|.+..|++|.||||+|+|+|||||+..++|
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4579999999999999999999999999999999999999875321 1323359999999999999999999877889
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEe-cChHHHHHHhccCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND 159 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~-~g~~vl~~i~~~~~~~~~ 159 (361)
+|+.++||..|++|++.++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|+ +||+++++|++++++..+
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 9999999999999998999999999999999999999999999999999999999999999 799999999999998889
Q ss_pred CcccceEecccccc
Q 018089 160 CPIADVTITDCGEI 173 (361)
Q Consensus 160 ~P~~~v~I~~~~~~ 173 (361)
.|..+|+|.+|+++
T Consensus 173 ~P~~~i~I~~cG~~ 186 (186)
T PLN03149 173 RPKLACVISECGEM 186 (186)
T ss_pred CCcCCeEEEeCEeC
Confidence 99999999999864
No 9
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=7.7e-46 Score=314.06 Aligned_cols=170 Identities=62% Similarity=1.018 Sum_probs=157.0
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.+|+||||++|++++.|+|+||||.+.||.||+||++||++.+... .|+..+|+||.||||+|+|+|||||+..+.|
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 35899999999999999999999999999999999999998764321 3455699999999999999999999987789
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
+++.++||..+++|+..++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||+++++|+..++. .+.
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~ 169 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY 169 (183)
T ss_pred CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence 9999999999999998999999999999999999999999999999999999999999999999999999998875 478
Q ss_pred cccceEecccccc
Q 018089 161 PIADVTITDCGEI 173 (361)
Q Consensus 161 P~~~v~I~~~~~~ 173 (361)
|..+|.|.+|+++
T Consensus 170 P~~~v~I~~cg~~ 182 (183)
T PTZ00060 170 PKKPVVVTDCGEL 182 (183)
T ss_pred CcCCeEEEEeEEc
Confidence 9999999999986
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-46 Score=300.66 Aligned_cols=145 Identities=52% Similarity=0.833 Sum_probs=130.7
Q ss_pred CCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCC
Q 018089 13 GVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFE 92 (361)
Q Consensus 13 ~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~ 92 (361)
..++.|+|+|+||++.||+||+||++||+.+ ||+|+.||||||+|||||||++.+.|+|++ +.+|+
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~ 69 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFK 69 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCc
Confidence 3477999999999999999999999999975 999999999999999999999987788888 58899
Q ss_pred CCCcCCCCCC--ceEEEeeeCC-CCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC----CCcccce
Q 018089 93 DENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADV 165 (361)
Q Consensus 93 ~e~~~~~~~~--~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~----~~P~~~v 165 (361)
+|++...|++ +|+|||||++ |||+||||||++.+.|+||++|+|||+|++||++|++|++..+... +.|..++
T Consensus 70 ~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~ 149 (158)
T COG0652 70 DENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPV 149 (158)
T ss_pred ccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCe
Confidence 9999888887 9999999999 9999999999999999999999999999999999999999877653 3455666
Q ss_pred Eecccc
Q 018089 166 TITDCG 171 (361)
Q Consensus 166 ~I~~~~ 171 (361)
.|.+..
T Consensus 150 ~i~~~~ 155 (158)
T COG0652 150 KILSVK 155 (158)
T ss_pred EEeeee
Confidence 666544
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.3e-43 Score=289.59 Aligned_cols=152 Identities=47% Similarity=0.798 Sum_probs=142.3
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+. ++|+++.+++|..+++|
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E 73 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE 73 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcc
Confidence 45999999999999999999999999976 8999999999999999999986 67889999999999999
Q ss_pred Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEecccccc
Q 018089 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173 (361)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~~ 173 (361)
.. .++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|..+++|.++.++
T Consensus 74 ~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 74 FKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 54 67899999999999999999999999999999999999999999999999999999998888999999999999998
Q ss_pred CCCCC
Q 018089 174 PEGAD 178 (361)
Q Consensus 174 ~~~~~ 178 (361)
..+++
T Consensus 154 ~dpf~ 158 (159)
T cd01923 154 VDPFE 158 (159)
T ss_pred eCCCC
Confidence 76643
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=8.2e-43 Score=286.17 Aligned_cols=143 Identities=58% Similarity=0.889 Sum_probs=135.3
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+++ ||+|+.||||+|||+|||||+. ++|+++.++||.+|++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 71 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE 71 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence 56899999999999999999999999986 9999999999999999999976 67888999999999999
Q ss_pred Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEecc
Q 018089 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (361)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~ 169 (361)
.. .++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|..+|+|.+
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 76 7889999999999999999999999999999999999999999999999999999999988899999999975
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.7e-42 Score=285.57 Aligned_cols=144 Identities=51% Similarity=0.860 Sum_probs=136.0
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+++ ||+|+.||||+++|+|||||+. ++|+++.++||.+|++|
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 74 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDE 74 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccc
Confidence 45999999999999999999999999986 9999999999999999999986 67888889999999999
Q ss_pred Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEeccc
Q 018089 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170 (361)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~ 170 (361)
.. .++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||++++|++++++.++.|..+|+|.++
T Consensus 75 ~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 151 (153)
T cd01928 75 FRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDV 151 (153)
T ss_pred cccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence 76 57888999999999999999999999999999999999999999999999999999999888999999999876
No 14
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=3.1e-42 Score=281.88 Aligned_cols=141 Identities=57% Similarity=0.885 Sum_probs=132.8
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+++ ||+|+.||||+|+|+|||||+. ++|.++.++||.+|++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e 71 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE 71 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence 56999999999999999999999999986 9999999999999999999976 56888889999999999
Q ss_pred C-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEec
Q 018089 95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168 (361)
Q Consensus 95 ~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~ 168 (361)
. ..++|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||+++++|++++++ ++.|..+|+|.
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 4 5789999999999999999999999999999999999999999999999999999999998 68999999885
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=6.8e-42 Score=286.38 Aligned_cols=153 Identities=40% Similarity=0.663 Sum_probs=139.5
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCC------
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG------ 88 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------ 88 (361)
|+.|+|+||||.+.||+||+||++||+++ ||+|+.||||+++|+|||||+. ++|+++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~ 71 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ 71 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence 46899999999999999999999999986 9999999999999999999986 56778877765
Q ss_pred -CCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCC-CCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccce
Q 018089 89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (361)
Q Consensus 89 -~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~-~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v 165 (361)
..|++|.. .++|+++|+|+||+.++++++|||||++.+ .|+||++|+|||+|++||+++++|+.++++.++.|..+|
T Consensus 72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i 151 (166)
T cd01921 72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI 151 (166)
T ss_pred CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence 35777764 688999999999999999999999999975 799999999999999999999999999998889999999
Q ss_pred EeccccccCCCCCC
Q 018089 166 TITDCGEIPEGADD 179 (361)
Q Consensus 166 ~I~~~~~~~~~~~~ 179 (361)
+|..+.++..++++
T Consensus 152 ~I~~~~i~~~pf~~ 165 (166)
T cd01921 152 RIKHTHILDDPFPD 165 (166)
T ss_pred EEEEEEEECCCCCC
Confidence 99999999877654
No 16
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=307.74 Aligned_cols=155 Identities=45% Similarity=0.790 Sum_probs=146.5
Q ss_pred EEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCcc
Q 018089 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESI 86 (361)
Q Consensus 7 ~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~ 86 (361)
|+.+. ++.|.+-|||+.|.+|++|+||+.||+.+ ||+|+.|||.|++|||||||++ ++|.||.||
T Consensus 279 yvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSi 343 (518)
T KOG0883|consen 279 YVRLV---TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESI 343 (518)
T ss_pred eEEEe---ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccc
Confidence 44444 56899999999999999999999999987 9999999999999999999987 789999999
Q ss_pred CCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccce
Q 018089 87 YGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (361)
Q Consensus 87 ~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v 165 (361)
+|.+|.||+. .|+|+.+|+|||||+|||||||||||+..++.|||++|++||+|+.|+++|.+|+++++++.++|..+|
T Consensus 344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I 423 (518)
T KOG0883|consen 344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEI 423 (518)
T ss_pred cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccce
Confidence 9999999975 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCCC
Q 018089 166 TITDCGEIPEG 176 (361)
Q Consensus 166 ~I~~~~~~~~~ 176 (361)
.|..+.+...+
T Consensus 424 ~i~~~~VFVdP 434 (518)
T KOG0883|consen 424 KIEDAIVFVDP 434 (518)
T ss_pred EEeeeEEeeCc
Confidence 99999888554
No 17
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-42 Score=281.09 Aligned_cols=164 Identities=61% Similarity=1.034 Sum_probs=155.6
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEE---eecCceEEeCcCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHR---VIKGFMIQGGDISA 77 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~r---v~~~~~iq~G~~~~ 77 (361)
|.+|.||||++++++++|+++++||.+..|+|++||..||++.++++ |++..||| .+++||+||||++.
T Consensus 1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~ 72 (167)
T KOG0865|consen 1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC 72 (167)
T ss_pred CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence 78999999999999999999999999999999999999999887775 99999999 34579999999999
Q ss_pred CCCCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCC
Q 018089 78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157 (361)
Q Consensus 78 ~~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~ 157 (361)
++|+|+.||||++|+|||+.++|..||+|+|||.||+++||||||++....|||++|+|||+|.+||+++++++...+.+
T Consensus 73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~ 152 (167)
T KOG0865|consen 73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN 152 (167)
T ss_pred cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977655
Q ss_pred CCCcccceEecccccc
Q 018089 158 NDCPIADVTITDCGEI 173 (361)
Q Consensus 158 ~~~P~~~v~I~~~~~~ 173 (361)
+.+...+.|.+|+.+
T Consensus 153 -gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 153 -GKTSKKITIADCGQL 167 (167)
T ss_pred -CcccccEEEecCCcC
Confidence 889999999999864
No 18
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=307.50 Aligned_cols=152 Identities=54% Similarity=0.809 Sum_probs=143.6
Q ss_pred EEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCC
Q 018089 9 DISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYG 88 (361)
Q Consensus 9 ~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~ 88 (361)
+-+|-.+++|+|.|.||++.||+||+||-..|+.+ ||+|..|||||+|||||+||+. ++|+||.||+|
T Consensus 405 ~~aiihtt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg 472 (558)
T KOG0882|consen 405 KAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWG 472 (558)
T ss_pred cceEEEecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCccccc
Confidence 34555678999999999999999999999999987 9999999999999999999987 89999999999
Q ss_pred CCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEe
Q 018089 89 LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167 (361)
Q Consensus 89 ~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I 167 (361)
..|+||.. .|.|++|.+|||||.||||||||||||+.+.|||||+|+|||+|..||+|++.|+++.++..++|..++.|
T Consensus 473 ~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~i 552 (558)
T KOG0882|consen 473 KDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKI 552 (558)
T ss_pred ccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeE
Confidence 99999975 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 018089 168 TDCGE 172 (361)
Q Consensus 168 ~~~~~ 172 (361)
.+..+
T Consensus 553 inisv 557 (558)
T KOG0882|consen 553 INISV 557 (558)
T ss_pred EEEec
Confidence 87653
No 19
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-41 Score=252.38 Aligned_cols=150 Identities=48% Similarity=0.770 Sum_probs=140.6
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
+..|+|.||||-+-+|+||+||+.||... ||+|++|||-++|||+|+||++ .+|.||.||+|.+|+||
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede 74 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDE 74 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHH
Confidence 44899999999999999999999999886 9999999999999999999987 67999999999999999
Q ss_pred Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC-CCcccceEeccccc
Q 018089 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE 172 (361)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~ 172 (361)
.. -|+|+.+|+|||||.||++++|||||+.+..||||-+|+|||+|++|+|.+++|+.+++++. .+|..++.|.+...
T Consensus 75 ~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred HHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 76 59999999999999999999999999999999999999999999999999999999999886 89999999988876
Q ss_pred cCCC
Q 018089 173 IPEG 176 (361)
Q Consensus 173 ~~~~ 176 (361)
-..+
T Consensus 155 hanp 158 (161)
T KOG0884|consen 155 HANP 158 (161)
T ss_pred ecCc
Confidence 5433
No 20
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.3e-40 Score=277.07 Aligned_cols=160 Identities=39% Similarity=0.692 Sum_probs=144.6
Q ss_pred EEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCC
Q 018089 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE 84 (361)
Q Consensus 5 ~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (361)
.|.|++ +.|+|+||||.+.+|+||+||++||+.+ ||+|+.||||+|+|+|||||+. ++|+++.
T Consensus 7 ~v~i~T-----s~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~ 69 (171)
T cd01925 7 KVILKT-----TAGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69 (171)
T ss_pred EEEEEE-----ccccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence 555555 4899999999999999999999999986 8999999999999999999976 6788999
Q ss_pred ccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec-ChHHHHHHhccCCCCCCCcc
Q 018089 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~-g~~vl~~i~~~~~~~~~~P~ 162 (361)
++||.+|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|+. ++.++++|+.+.++.++.|.
T Consensus 70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~ 149 (171)
T cd01925 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV 149 (171)
T ss_pred ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence 999999999965 5789999999999999999999999999999999999999999983 56778999999998888999
Q ss_pred cceEeccccccCCCCCCCC
Q 018089 163 ADVTITDCGEIPEGADDGI 181 (361)
Q Consensus 163 ~~v~I~~~~~~~~~~~~~~ 181 (361)
.+++|.+|.++..++++-+
T Consensus 150 ~~i~I~~~~i~~~pf~~~~ 168 (171)
T cd01925 150 YPPKITSVEVLENPFDDIV 168 (171)
T ss_pred CCeEEEEEEEEcCCchhhc
Confidence 9999999999877655543
No 21
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=2.3e-39 Score=275.32 Aligned_cols=152 Identities=31% Similarity=0.498 Sum_probs=132.0
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
++.|.|++ +.|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+....+
T Consensus 28 ~~~v~l~T-----~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~-- 89 (190)
T PRK10903 28 DPHVLLTT-----SAGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ-- 89 (190)
T ss_pred CcEEEEEe-----ccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence 45666654 4899999999999999999999999976 99999999999999999999764322
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCC-CCCCCcceEeecCCCCCCCC-----CceEEeEEecChHHHHHHhccCCC
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG 156 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld~-----~~~vfG~v~~g~~vl~~i~~~~~~ 156 (361)
...++.+|.+|.....|+.+|+|+||+.+ |+++||||||++++.|+||+ +|+|||+|++|||++++|++++++
T Consensus 90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~ 168 (190)
T PRK10903 90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH 168 (190)
T ss_pred -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence 23346778888766667889999999976 99999999999999999984 899999999999999999999987
Q ss_pred C----CCCcccceEecccccc
Q 018089 157 D----NDCPIADVTITDCGEI 173 (361)
Q Consensus 157 ~----~~~P~~~v~I~~~~~~ 173 (361)
. .+.|..++.|.+|.++
T Consensus 169 ~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 169 DVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCcccCCeEEEEEEEe
Confidence 5 4689999999998765
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.3e-38 Score=264.76 Aligned_cols=144 Identities=35% Similarity=0.592 Sum_probs=124.2
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+|+||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+..+.+. ..++.+|++|
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e 71 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE 71 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence 56999999999999999999999999986 999999999999999999997644332 2246678888
Q ss_pred CcCCCCCCceEEEeeeCC-CCCCCcceEeecCCCCCCC-------C-CceEEeEEecChHHHHHHhccCCCCC----CCc
Q 018089 95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCP 161 (361)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld-------~-~~~vfG~v~~g~~vl~~i~~~~~~~~----~~P 161 (361)
.....++.+|+||||+.+ |++++|||||++.+.++|| + +|+|||+|++||+++++|+.++++.+ +.|
T Consensus 72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P 151 (164)
T PRK10791 72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP 151 (164)
T ss_pred ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence 544445688999999986 9999999999999988776 3 79999999999999999999998763 689
Q ss_pred ccceEeccccc
Q 018089 162 IADVTITDCGE 172 (361)
Q Consensus 162 ~~~v~I~~~~~ 172 (361)
..+|.|.++.+
T Consensus 152 ~~~v~I~~~~i 162 (164)
T PRK10791 152 KEDVIIESVTV 162 (164)
T ss_pred CCCeEEEEEEE
Confidence 99999998754
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.4e-38 Score=260.84 Aligned_cols=141 Identities=37% Similarity=0.530 Sum_probs=123.2
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+....+. ..++.++.+|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e 69 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE 69 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence 56899999999999999999999999976 999999999999999999998744322 2346678888
Q ss_pred CcCCCCCCceEEEeeeCC-CCCCCcceEeecCCCCCCCC-----CceEEeEEecChHHHHHHhccCCCCC----CCcccc
Q 018089 95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD 164 (361)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~-~~~~~sqF~i~~~~~~~ld~-----~~~vfG~v~~g~~vl~~i~~~~~~~~----~~P~~~ 164 (361)
.....|+++|+||||+.+ |++++|||||++.+.|+||+ +|+|||+|++||+++++|++++++.. +.|..+
T Consensus 70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~ 149 (155)
T cd01920 70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD 149 (155)
T ss_pred ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence 766667899999999976 99999999999999999995 79999999999999999999999764 578878
Q ss_pred eEecc
Q 018089 165 VTITD 169 (361)
Q Consensus 165 v~I~~ 169 (361)
|.|.+
T Consensus 150 v~i~~ 154 (155)
T cd01920 150 VIIES 154 (155)
T ss_pred eEEEE
Confidence 77754
No 24
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2.9e-36 Score=253.39 Aligned_cols=127 Identities=35% Similarity=0.562 Sum_probs=111.2
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC-------------
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT------------- 81 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~------------- 81 (361)
|+.|+|+|+||++.||+||+||++||+.+ ||+|+.||||+++|||||||+... ++
T Consensus 4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~ 71 (176)
T cd01924 4 TDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTI 71 (176)
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccc
Confidence 57899999999999999999999999976 999999999999999999998643 21
Q ss_pred --------CCCccCCCCCC-----CCCcCCCCCCceEEEeeeCC--CCCCCcceEeecC-------CCCCCCCCceEEeE
Q 018089 82 --------GGESIYGLKFE-----DENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR 139 (361)
Q Consensus 82 --------~~~~~~~~~~~-----~e~~~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~-------~~~~ld~~~~vfG~ 139 (361)
++.++|+.++. +++..++|+.+|+|+||+.+ |+|++|||||++. +.|+||++|+|||+
T Consensus 72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~ 151 (176)
T cd01924 72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151 (176)
T ss_pred cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence 12346665543 55677889999999999988 6999999999998 78999999999999
Q ss_pred EecChHHHHHHhcc
Q 018089 140 VIKGMGVVRSIEHV 153 (361)
Q Consensus 140 v~~g~~vl~~i~~~ 153 (361)
|++|||++++|...
T Consensus 152 VveG~dvl~~I~~g 165 (176)
T cd01924 152 VTDGLDILRELKVG 165 (176)
T ss_pred EecCHHHHHhhcCC
Confidence 99999999999753
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.1e-35 Score=245.11 Aligned_cols=141 Identities=62% Similarity=0.969 Sum_probs=128.7
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+|+||.+.+|++|+||++||+++ +|+|+.||||+|+++|||||+....+.+ +.++.++++|
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E 70 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDE 70 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCc
Confidence 44799999999999999999999999987 8999999999999999999987543322 4568889999
Q ss_pred CcCCC-CCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEec
Q 018089 95 NFELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168 (361)
Q Consensus 95 ~~~~~-~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~ 168 (361)
..... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|++++++|...+++.++.|..+|+|.
T Consensus 71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 87655 899999999999999999999999999999999999999999999999999999999889999999985
No 26
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-36 Score=264.37 Aligned_cols=161 Identities=39% Similarity=0.670 Sum_probs=145.1
Q ss_pred EEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCC
Q 018089 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE 84 (361)
Q Consensus 5 ~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (361)
.|.|.++ .|+|.||||...||++|.||++||..+ ||+||.|||++|||.+||||++ ++|+||.
T Consensus 14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge 76 (439)
T KOG0885|consen 14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE 76 (439)
T ss_pred eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence 5666665 899999999999999999999999987 9999999999999999999987 7899999
Q ss_pred ccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec-ChHHHHHHhccCCCCCCCcc
Q 018089 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~-g~~vl~~i~~~~~~~~~~P~ 162 (361)
||||.+|.+|.. .+..+++|+|+||+.+.+.||||||+|+++.|+|++++++||+|+. ..=.+..|..+.++.+++|.
T Consensus 77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~ 156 (439)
T KOG0885|consen 77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV 156 (439)
T ss_pred ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence 999999999965 6888999999999999999999999999999999999999999983 22336778888888889999
Q ss_pred cceEeccccccCCCCCCCCC
Q 018089 163 ADVTITDCGEIPEGADDGIS 182 (361)
Q Consensus 163 ~~v~I~~~~~~~~~~~~~~~ 182 (361)
.+..|.++.++..++.+..+
T Consensus 157 ~p~kI~s~EV~~npFdDI~p 176 (439)
T KOG0885|consen 157 DPPKIKSVEVLINPFDDIKP 176 (439)
T ss_pred CccceeeeEeecCchhhcch
Confidence 99999999999777666544
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=4.6e-35 Score=244.01 Aligned_cols=151 Identities=50% Similarity=0.839 Sum_probs=131.2
Q ss_pred EEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC-Cc
Q 018089 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG-ES 85 (361)
Q Consensus 7 ~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~-~~ 85 (361)
||+|+.++ +|+|+||||++.||++|+||++||+.+ +|+|+.||||+|+++||||++....+.+. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78898765 899999999999999999999999976 89999999999999999999875433111 12
Q ss_pred cCCCCCCCCCc-CCCCCCceEEEeeeCC--CCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~~~~~~~~--~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
..+.++++|.. ...++++|+|+|++.+ +++++|||||++.+.|+||++|+|||+|++|++++++|+..+++. .|.
T Consensus 68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~ 145 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK 145 (155)
T ss_dssp TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence 33556888874 4445599999999986 899999999999999999999999999999999999999988876 899
Q ss_pred cceEeccccc
Q 018089 163 ADVTITDCGE 172 (361)
Q Consensus 163 ~~v~I~~~~~ 172 (361)
.+|+|.+|++
T Consensus 146 ~~v~I~~cgv 155 (155)
T PF00160_consen 146 QDVTISSCGV 155 (155)
T ss_dssp STEEEEEEEE
T ss_pred CCeEEEEeEC
Confidence 9999999974
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-33 Score=245.01 Aligned_cols=154 Identities=39% Similarity=0.635 Sum_probs=142.3
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCC-----
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGL----- 89 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~----- 89 (361)
|++|+|+|+||-+.+|.||.||++||+-. ||+.|.||.|..+|.+|+||++ ++|.||.||||.
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q 74 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ 74 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence 34999999999999999999999999987 9999999999999999999998 699999999863
Q ss_pred --CCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCC-CCCCCceEEeEEecChHHHHHHhccCCCCCCCcccce
Q 018089 90 --KFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTS-HLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (361)
Q Consensus 90 --~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v 165 (361)
.|+.|. +.++|.+.|+|||++.|.+-+|||||||++.+- .|||+|+|||+|.+|++++.+|...-++....|..+|
T Consensus 75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI 154 (479)
T KOG0415|consen 75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI 154 (479)
T ss_pred chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence 367775 479999999999999999999999999999874 8999999999999999999999999999999999999
Q ss_pred EeccccccCCCCCCC
Q 018089 166 TITDCGEIPEGADDG 180 (361)
Q Consensus 166 ~I~~~~~~~~~~~~~ 180 (361)
+|...-++..+++++
T Consensus 155 RI~HTiiLdDPFddp 169 (479)
T KOG0415|consen 155 RIKHTIILDDPFDDP 169 (479)
T ss_pred eeeeeEEecCCCCCc
Confidence 999999998887665
No 29
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-24 Score=198.36 Aligned_cols=158 Identities=34% Similarity=0.467 Sum_probs=145.8
Q ss_pred CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+....+++++.|...++.||.+|+.|+|..|...|++|+.++++....+. ++..........+++|+|.||+++++|
T Consensus 197 ~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~---ee~~~~~~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 197 WKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE---EEQKKAEALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred cccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH---HHHHHHHHHHHHHhhHHHHHHHhhhhH
Confidence 45556679999999999999999999999999999999998876544332 445556777889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 360 (361)
.+|+..|+++|+++|.|+||+||+|.|+..+|+|+.|+.+|+++++++|+|+.+...|..|+++.++++.++|++|++||
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 018089 361 Q 361 (361)
Q Consensus 361 ~ 361 (361)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 5
No 30
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.5e-22 Score=177.55 Aligned_cols=125 Identities=34% Similarity=0.485 Sum_probs=120.6
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
+....|+.++..||.+.+.++|.+|+..|.+||. ++|.++..|.|||.+|.+||+|+.|+++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence 5677899999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
|+.||.+||.++|+|.|+|.+|+.+|++++|++.|+++++++|+|+..+..|..++.++.+.+
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999887654
No 31
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6e-20 Score=156.12 Aligned_cols=161 Identities=29% Similarity=0.333 Sum_probs=153.2
Q ss_pred CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+..+-++++..+..+...||.+|+.|+|.+|..+|..|+..+....-.+.+.+.++..++.....++.|.++|++..++|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 56778888999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
-++++.|..+|..+|.|.||||++|.++...-+.++|.++|.++++++|.- +.+...|..+..++.+.+++++-.+++|
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~km 326 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKM 326 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999985 4688899999999999999999999999
Q ss_pred cC
Q 018089 360 FQ 361 (361)
Q Consensus 360 f~ 361 (361)
|+
T Consensus 327 fs 328 (329)
T KOG0545|consen 327 FS 328 (329)
T ss_pred cC
Confidence 96
No 32
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.3e-19 Score=148.38 Aligned_cols=137 Identities=29% Similarity=0.392 Sum_probs=126.3
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
....+..+..++..||.+|++|+|.+|...|..||.+++.+ .......+|.|+|.|.++++.|+.||
T Consensus 88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~aI 154 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESAI 154 (271)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 34457789999999999999999999999999999988876 55678899999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
.+|.+||+++|.+.+|+.|+|.+|..+..|++|+.+|++.++++|....++..+.++...+.+..++.|.
T Consensus 155 ~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 155 EDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888877776554
No 33
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-16 Score=149.39 Aligned_cols=117 Identities=28% Similarity=0.499 Sum_probs=112.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+...+..||.+|+.|+|..|+.+|.+||. .+|.+..+|.|||.||.+++.+..|+.+|+++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 477888999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
|+++|++.++|+|.|.++..+.+|+.|.+.|.++++++|++.++...+..|...+
T Consensus 419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988764
No 34
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.66 E-value=1.8e-16 Score=141.08 Aligned_cols=121 Identities=27% Similarity=0.254 Sum_probs=114.3
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
.+++++.+..+++.||.||++|.|++|+.||.+++. ..|.++..+.|+|.+|++++.|..|.
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
.+|..|+.+|..+.+||.|++.+...+|...+|.++++.+++|.|++.+..+.++.+..
T Consensus 152 ~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 152 EDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999888888877765
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.9e-16 Score=142.61 Aligned_cols=132 Identities=23% Similarity=0.314 Sum_probs=112.7
Q ss_pred CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHH
Q 018089 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (361)
Q Consensus 202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (361)
....+++.+.|..++..||.+|++|.|++||.+|++||+ +.|..+..|.|||.||..+|+|+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~------------------l~p~epiFYsNraAcY~~lgd~~ 166 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE------------------LCPDEPIFYSNRAACYESLGDWE 166 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh------------------cCCCCchhhhhHHHHHHHHhhHH
Confidence 345677788999999999999999999999999999999 66666889999999999999999
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHH
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP-NDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+.+++|.+||+++|+++||++||+.++..+|++++|+.+..-..-+.. +|..+.-.+.++..+....+.+
T Consensus 167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~ 237 (606)
T KOG0547|consen 167 KVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAK 237 (606)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875444433 4666666666666555544443
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=3.1e-15 Score=122.73 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=110.3
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.+...|..++..|+|++|+..|++++. .+|.+..+|.++|.++..+|++++|+..|++++.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 466789999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
+|.++.+++++|.++..+|++++|+..|+++++++|+++..+..++.++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877654
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=2.8e-15 Score=141.25 Aligned_cols=118 Identities=25% Similarity=0.438 Sum_probs=112.6
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..++..|+.+|..|+|..|+++|++||+ ++|.+..+|+++|.|++++|++++|+.++++|+.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999 8888899999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
++|++..+|+++|.+++.+|+|++|+..|+++++++|+++.+...+..+...+...
T Consensus 65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998888653
No 38
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.4e-15 Score=134.69 Aligned_cols=132 Identities=27% Similarity=0.439 Sum_probs=117.2
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
.--..+..+.++..||.+|++|+|..|.++|..||.+-|. -....+.+|.|+|.+..++|+..+||
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------------n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------------NKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------------ccchhHHHHHHhHhhhcccCCchhhh
Confidence 3344556788899999999999999999999999993332 12346788999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.+|+.|+.+||...+++.++|.|+..+++|++|+++|++|+++... .+++..+.+++..+++.+++
T Consensus 308 sdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRk 373 (486)
T KOG0550|consen 308 SDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRK 373 (486)
T ss_pred hhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999876 88999999999998877764
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-14 Score=136.44 Aligned_cols=113 Identities=28% Similarity=0.420 Sum_probs=109.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+...+.+||.+|..|+|+.|+.+|..||. ++|.+..+|.|++.||.++++|++|+.+..+.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~ 63 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR 63 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence 45678899999999999999999999999 888999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
+++|+++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|..+.
T Consensus 64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999999999999998
No 40
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.1e-14 Score=125.16 Aligned_cols=108 Identities=27% Similarity=0.433 Sum_probs=95.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.|+.+++.||.+|+.++|..|+..|.++|..- + .....++.+|.|||.|.+.+|+|..||.+|.+|
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c------------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--C------------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--C------------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999811 0 123367889999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
+.++|++.|+++|-|.|++.++++++|..+++..+.++-..+
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999999999999999999999999999888887777654433
No 41
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.53 E-value=2.6e-13 Score=110.22 Aligned_cols=115 Identities=11% Similarity=0.106 Sum_probs=103.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.-+.++..|..++..|+|++|...|+-+.. ++|.+...|+|||.|+..+|+|++||..|.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356788999999999999999999999998 99999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
+.++|+++.++++.|.|++.+|+.+.|.+.|+.++.+...++.......+++.
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998555444333333433
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=3.2e-13 Score=109.42 Aligned_cols=118 Identities=15% Similarity=0.258 Sum_probs=108.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.....+|..++..|++++|++.+++++. .+|....++.++|.++..++++++|+..++++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999998 77888999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
+.++|++...++.+|.++..+|++++|+..|+++++++|++.........+...++
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887777776665543
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-13 Score=131.75 Aligned_cols=124 Identities=23% Similarity=0.210 Sum_probs=108.2
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+.++.++||.+-..+.|+.|+.+|.+|+. +.|..+.++.|+|.+|..+|..+-||..|++
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALN------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHh------------------cCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 3567889999999999999999999999998 8888888888888888888888888888888
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
||+++|....||.++|.++...|+..+|.++|.+|+.+.|+++.+..+|+.++.+....+.+
T Consensus 312 al~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred HHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 88888888888888888888888888888888888888888888888888888877766555
No 44
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=1.6e-12 Score=131.81 Aligned_cols=113 Identities=24% Similarity=0.329 Sum_probs=102.8
Q ss_pred CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+..+.++....+..++.+|+.+++.|+|++|+.+|+++|+ +.|. ...|.|+|.||+++|+|
T Consensus 116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~------------------~~p~-~~~~~n~a~~~~~l~~~ 176 (615)
T TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE------------------CKPD-PVYYSNRAACHNALGDW 176 (615)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCc-hHHHHHHHHHHHHhCCH
Confidence 4556677778899999999999999999999999999998 4453 56799999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
++|+.+|++||.++|++.++|+++|.+|..+|++++|+.+|..++.+++.+.
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999888877544
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.45 E-value=4.3e-13 Score=127.75 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=70.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+.++|..+..+|++++|+.+|++||+ +.|..+.++.|+|.+|..+|+.+.|+++|.+|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr------------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALR------------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHh------------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 344445555555555555555555555555 55566666666666666666666666666666
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
|.++|..++|+.++|.+|...|+.++|++.|+.|+++.|+.+.+..++.-+.+-.-
T Consensus 449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666665555544433
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=1.6e-12 Score=119.83 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=100.9
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..+...|++++|+..|+++++ ++|....+|+++|.++..+|++++|+..++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467799999999999999999999999999 88889999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
++++|++..+++++|.++...|++++|+++|+++++++|+++.
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999973
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=3.5e-12 Score=110.25 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=104.6
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH-HhcCC--HH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LK 281 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~ 281 (361)
+...++.++.|..+|..+...|++++|+..|+++++ +.|.+..++.++|.++ ...|+ ++
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 333445678899999999999999999999999999 8899999999999985 67787 59
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
+|+..++++++++|++..+++.+|.+++.+|+|++|+..++++++++|.+..-...+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765554443
No 48
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.40 E-value=3.4e-13 Score=125.86 Aligned_cols=122 Identities=30% Similarity=0.408 Sum_probs=116.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.|..+++.++.+++.+.|+.|+..|.+||+ ++|..+..+-|+|.++++.++|..|+.++.+|
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~ka 64 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALKA 64 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHhh
Confidence 467789999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
|+++|...++|+|+|.+++.++++.+|..+|++...+.|+++.+...+.++.....+++-
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF 124 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999998887544
No 49
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-12 Score=111.16 Aligned_cols=116 Identities=28% Similarity=0.380 Sum_probs=105.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.++++++.||.+|..++|..|+.+|.+||. ++|..+..|.|+|.||+++++|+.+..+|.+|
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 578899999999999999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---C--CCHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE---P--NDGGIKKELAVAKKK 344 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~---p--~~~~~~~~l~~~~~~ 344 (361)
+.++|+.++++|-+|.+.+....|++|+..+.+|..+. | .-.++...|..++..
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 99999999999999999999999999999999996653 2 234677777777654
No 50
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.35 E-value=8.9e-12 Score=126.36 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=78.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|++++|+..|++++. ++|....+|.++|.++..+|++++|+..++++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIE------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456678889999999999999999999998 44455555556666666666666666666666
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
+.++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+...+++..
T Consensus 392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 66666555666666666666666666666666666666655555555555554444333
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.31 E-value=6.9e-12 Score=89.16 Aligned_cols=66 Identities=36% Similarity=0.531 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP 329 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p 329 (361)
+..|.++|.+++.+++|++|+.+|+++|.++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5689999999999999999999999999999999999999999999999 79999999999999998
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=2.6e-12 Score=123.62 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=98.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh-hc--cc----cCCCCccc---------hhhHHHHHHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD-IC--WE----KEGIDEGK---------SSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~-~~--~~----~~~~~~~~---------~~~~~~~~~~~~~nla~~~ 274 (361)
..+.|...||.|.-+++++.|++++++|+.+-+ .. +. +.-..++. ....+|..-.+|+.+|.+|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 578899999999999999999999999998544 11 00 00011110 1123556666777777777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+++++++.|.-++++|+.++|.+.......|.++.++|+.++|+..|++|+.++|.|+..+...+.+.-.+.++.++.
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777666666665543
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.27 E-value=5.7e-11 Score=93.50 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=96.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+...|..+++.|+|++|++.|.+++...+ .++....+++.+|.++.+.+++++|+..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP---------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 35678899999999999999999999998221 112335788999999999999999999999999
Q ss_pred hcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 018089 292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 292 ~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 337 (361)
..+|++ ..+++.+|.++..++++++|+..++++++..|++..+...
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 67 KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 998875 6789999999999999999999999999999998776544
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.3e-11 Score=110.88 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=104.0
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
.-+||-+.-+++-+.|+.+|++||+ ++|....+|..+|.-|+.+++-..|++.|.+|+.++|
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 4469999999999999999999999 8888888899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
.+-+|||.+|++|..++=..=|+-+|++|+++-|+|+.+|..|++|..++.+.+++.|
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 8888888888888888888888888888888888888888888888887777666643
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.1e-11 Score=108.79 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=118.8
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
++....|--+|..+...++-..|++.|++|++ ++|.+-.+|+.+|++|--++...=|+-+++
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 34566778899999999999999999999999 899999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+|+.+-|+++..|..+|.||..+++.++|+.+|++|+.+..-+..++..|+++.+++++.+++
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999988899999999999999988876
No 56
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.27 E-value=6.2e-11 Score=97.22 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 018089 232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311 (361)
Q Consensus 232 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~ 311 (361)
...|+++++ ++|.. +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+
T Consensus 13 ~~~~~~al~------------------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLS------------------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML 71 (144)
T ss_pred HHHHHHHHH------------------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 356888888 66664 668999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 312 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
|++++|+..|+++++++|+++.++..++.+...+++..++.+
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999998888777643
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=1e-10 Score=104.86 Aligned_cols=115 Identities=22% Similarity=0.311 Sum_probs=105.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.++.+.++|+.++.+|+|..|+.+|..|++ .+|.+-.+++.+|.+|+.+|+-.-|+.+++++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 578899999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKKELAVAKK 343 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~ 343 (361)
|++.|+..-|...+|.+++.+|++++|.++|+.++.-+|++.. +...|..+.+
T Consensus 99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999997654 4444444433
No 58
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.24 E-value=1.2e-10 Score=122.07 Aligned_cols=121 Identities=14% Similarity=0.051 Sum_probs=80.2
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+...|..+.+.|++++|+..|+++++ ++|.+..++.++|.++..+|++++|+..+++|++
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455556666666666666666666666 6666666677777777777777777777777777
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
++|+++.+++++|.++..+|++++|+..|+++++++|++..+....+++.......++.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777776666666666655555444443
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=1.3e-10 Score=100.46 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
.++.++++..++++++ .+|.+...|.++|.+|+.+|++++|+..|++|++++|++..+++.+
T Consensus 52 ~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5677888899999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHH-HhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 305 GQAY-MALND--VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 305 g~~~-~~~~~--~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|.++ ...|+ +++|.+.++++++++|++..++..++.+....++.+++.
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 9985 67787 599999999999999999999999999999888887764
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=7.2e-11 Score=113.84 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=120.9
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
--.+|+-+|.++.++++|+.|.-+|++|+. ++|.+..+...++..+.++|+.++|+..+++|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 456788899999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
+.++|.++-..|.+|.++..+++|++|+..|++..++.|++..+..+++++.++++....+.+..-
T Consensus 550 ~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 550 IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999999998777765543
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=3.3e-11 Score=85.66 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=64.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~ 289 (361)
.|..+..+|..++..|+|++|+.+|+++++ ++|.+..+++++|.|+.++| ++.+|+.++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 477899999999999999999999999999 89999999999999999999 79999999999
Q ss_pred HhhcCC
Q 018089 290 AMRDGD 295 (361)
Q Consensus 290 al~~~p 295 (361)
+|+++|
T Consensus 64 al~l~P 69 (69)
T PF13414_consen 64 ALKLDP 69 (69)
T ss_dssp HHHHST
T ss_pred HHHcCc
Confidence 999998
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=2.1e-10 Score=97.12 Aligned_cols=110 Identities=22% Similarity=0.193 Sum_probs=95.9
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
.....+..+...|..+...|+|++|+.+|++++++.+ ..+....++.++|.++.++|++++|+..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---------------DPNDRSYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------ccchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455688899999999999999999999999998321 0112356899999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCC
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMALND--------------VDAAVESFEKALKLEPND 331 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~~~--------------~~~A~~~~~~a~~l~p~~ 331 (361)
+++++.++|.+..++..+|.++..+++ +++|++.++++++++|++
T Consensus 95 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 95 YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999999888 688899999999999987
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=2.3e-10 Score=97.61 Aligned_cols=122 Identities=21% Similarity=0.132 Sum_probs=82.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.....+|..++..|++..|..-.++||+ .+|....+|.-||..|.++|+.+.|-+.|++|
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 456667788888888888888888888888 55566666666666666666666666666666
Q ss_pred hhcCCCc------------------------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089 291 MRDGDDN------------------------------------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 291 l~~~p~~------------------------------------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 334 (361)
+.++|++ +..|-++|.|.+..|+++.|..+|+++++++|+++..
T Consensus 96 lsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred HhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence 6666655 4566666666666777777777777777777777666
Q ss_pred HHHHHHHHHHHHHHHH
Q 018089 335 KKELAVAKKKIHERRE 350 (361)
Q Consensus 335 ~~~l~~~~~~~~~~~~ 350 (361)
...+...+-+..++-.
T Consensus 176 ~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 176 LLELARLHYKAGDYAP 191 (250)
T ss_pred HHHHHHHHHhcccchH
Confidence 6666666555544443
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.21 E-value=1.5e-10 Score=116.95 Aligned_cols=124 Identities=9% Similarity=0.049 Sum_probs=118.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|......|++++|...++.+++ +.|....++.++|.++.+++++++|+..++++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467889999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+..+|++..+++.+|.++..+|+|++|++.|++++..+|+++.++..++.+.....+.+++.
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777663
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=1.6e-10 Score=115.64 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=55.9
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+..+|..+...|++++|+..|++|++ ++|.+..+++++|.++..+|++++|+..++++++++
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANL------------------LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555554 444444455555555555555555555555555555
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~~~~ 347 (361)
|.+..+++.++.+++.+|++++|+..++++++.+ |+++.++..++.+...+++
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 5544444444444444555555555555554443 3444444444444433333
No 66
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.18 E-value=1.7e-10 Score=85.37 Aligned_cols=99 Identities=40% Similarity=0.569 Sum_probs=90.6
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.+..+|..++..|++++|+..++++++ ..|....++.++|.++..++++++|+..+++++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357789999999999999999999998 45555578999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
.|.+..+++.+|.++..+|++++|...+.++++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999998873
No 67
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.18 E-value=1.6e-11 Score=110.08 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=126.5
Q ss_pred CCcccceEeccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHH
Q 018089 159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238 (361)
Q Consensus 159 ~~P~~~v~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~a 238 (361)
..|..+..|...+++....+.+.. .+|.+ ....++.++.+...+-.+..++..|.+++|++.|..+
T Consensus 75 s~~~~~~~~d~egviepd~d~pq~----MGds~----------~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a 140 (377)
T KOG1308|consen 75 SSPESDLEIDGEGVIEPDTDAPQE----MGDSN----------AEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA 140 (377)
T ss_pred CCCCcchhccCCCccccCCCcchh----hchhh----------hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence 445566667777777433222222 23222 2345677888999999999999999999999999999
Q ss_pred HHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 018089 239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV 318 (361)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~ 318 (361)
|. ++|....+|.+++.++++++++..|+.+|..||.++|+..+.|-.+|.+...+|++++|.
T Consensus 141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 99 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 319 ESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 319 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
.+|..+++++- ++.+-..|.++....+..
T Consensus 203 ~dl~~a~kld~-dE~~~a~lKeV~p~a~ki 231 (377)
T KOG1308|consen 203 HDLALACKLDY-DEANSATLKEVFPNAGKI 231 (377)
T ss_pred HHHHHHHhccc-cHHHHHHHHHhccchhhh
Confidence 99999999974 455555555555444433
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=2.6e-10 Score=114.10 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
.+++++|+..+++|++ ++|.+..++..+|.++..+|++++|+..+++|++++|+++.+++.+
T Consensus 317 ~~~~~~A~~~~~~Al~------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 378 (553)
T PRK12370 317 QNAMIKAKEHAIKATE------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYY 378 (553)
T ss_pred chHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3568999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
|.++..+|++++|+..++++++++|.+......+..+.....+
T Consensus 379 g~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 379 GWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 9999999999999999999999999987665444433333333
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.5e-10 Score=106.55 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=109.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.|+.+.-.|..+|-.|++..|.+.+.++|. ++|....+|..||..|+...+-++-..++++|
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~------------------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIK------------------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHh------------------cCcccchHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 488888999999999999999999999999 77777777999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
..+||.++..||.||+.++-+++|++|+.+|++++.|+|++......++-+.-+..+..+.+
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m 448 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM 448 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777777766666544443
No 70
>PRK15331 chaperone protein SicA; Provisional
Probab=99.17 E-value=3.1e-10 Score=92.74 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=102.9
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.-+.++..|-.+|..|+|++|...|+-... +++.+...|..||.|+..+++|++|+..|..|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999998887 78888899999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
..++++++...|+.|.||+.+|+.+.|...|+.+++ .|.+..++..-......+.
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 5777665554444444443
No 71
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.16 E-value=1.3e-10 Score=85.98 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~ 302 (361)
+|+|+.|+..|+++++ ..|. ....++++|.|++++|+|++|+..+++ +..+|.+...++
T Consensus 2 ~~~y~~Ai~~~~k~~~------------------~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE------------------LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHH------------------HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHH------------------HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 6899999999999999 5542 567888899999999999999999999 889999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 018089 303 RQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~a 324 (361)
-+|.|+..+|+|++|+..|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
No 72
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.16 E-value=1.8e-10 Score=80.82 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
+.+|..+++.|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999885
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=6.8e-10 Score=97.08 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
.....+.++|.++..+|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++++.|.+...+..+..+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556778888888888888888888888888888888888888888888888888888888888877777777777776
Q ss_pred HHHHHHHHHH
Q 018089 342 KKKIHERREQ 351 (361)
Q Consensus 342 ~~~~~~~~~~ 351 (361)
....++.++.
T Consensus 213 ~~~~~~~~~a 222 (234)
T TIGR02521 213 ARALGDVAAA 222 (234)
T ss_pred HHHHhhHHHH
Confidence 6665555444
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=9.4e-10 Score=96.18 Aligned_cols=121 Identities=18% Similarity=0.138 Sum_probs=68.0
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|+|++|++.++++++ ..|....++..+|.++..+|++++|+..+++++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE------------------HDPDDYLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55566677777777777777777777776 333334444455555555555555555555555
Q ss_pred hcCCCchh------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 292 RDGDDNVK------------------------------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 292 ~~~p~~~k------------------------------------a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
..+|.+.. .++.+|.++...|++++|...++++++.+|++..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 93 TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred hhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence 54444444 455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 018089 336 KELAVAKKKIHERRE 350 (361)
Q Consensus 336 ~~l~~~~~~~~~~~~ 350 (361)
..++.+....++.++
T Consensus 173 ~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 173 LELAELYYLRGQYKD 187 (234)
T ss_pred HHHHHHHHHcCCHHH
Confidence 555555544444433
No 75
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.15 E-value=4.4e-10 Score=117.86 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=100.8
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHH
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~ 303 (361)
..|++++|+..|+++++ .+|. ..++.++|.++.++|++++|+..+++++.++|++..++.+
T Consensus 588 ~~Gr~~eAl~~~~~AL~------------------l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 588 IPGQPELALNDLTRSLN------------------IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred hCCCHHHHHHHHHHHHH------------------hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34777777777777777 6775 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+|.++..+|++++|++.|+++++++|+++.++..++.+...+++.+++..
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999998888776643
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=111.06 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=105.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
++...-+|..|+-.|+|+.|+.+|+.||. .+|.+..+|+.||.++..-.+..+||..|++||
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 34455679999999999999999999999 999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----D------GGIKKELAVAKKKIHE 347 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~----~------~~~~~~l~~~~~~~~~ 347 (361)
.+.|..++++|++|.+++.+|.|++|+..|-.||.+.+. + ..+|..|+.+...+.+
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999765 1 2488888866555443
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=1.3e-09 Score=96.86 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=99.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+...|..++..|+|+.|+..|++++...+ .++....+++++|.++..++++++|+..++++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP---------------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 466789999999999999999999999998322 12334568899999999999999999999999
Q ss_pred hhcCCCchh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089 291 MRDGDDNVK---ALFRQGQAYMAL--------NDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 291 l~~~p~~~k---a~~~~g~~~~~~--------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 340 (361)
++.+|++.. +++.+|.++..+ +++++|+..|+++++.+|.+..+...+..
T Consensus 97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 999998876 799999999987 88999999999999999999766554443
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=7.8e-10 Score=96.12 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=113.6
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+|...+..|+|..|+..++++.+ +.|.+..+|+.+|.+|.++|++++|...|.++++
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 3455599999999999999999999999 8999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.|.++.+..++|..|.-.|+++.|...+.++....+.+..+..+|..+.....+..+++
T Consensus 163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 999999999999999999999999999999999988889999999999888777666654
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=1.1e-09 Score=92.29 Aligned_cols=108 Identities=20% Similarity=0.127 Sum_probs=91.1
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+...|..++..|+|++|+..|++++.+.+ ..+....++.|+|.++..+|++++|+..|++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678889999999999999999999999998321 1112456899999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCCH
Q 018089 290 AMRDGDDNVKALFRQGQAYM-------ALNDVD-------AAVESFEKALKLEPNDG 332 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~-------~~~~~~-------~A~~~~~~a~~l~p~~~ 332 (361)
++.++|.+..++..+|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999 777776 66666667888888653
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.10 E-value=7.5e-10 Score=89.50 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.+|........+|.+++..|++++|+..+++++..+|.+..+++++|.++..+|++++|+..|+++++++|.+...+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+....++.+++.
T Consensus 92 a~~~~~~g~~~~A~ 105 (135)
T TIGR02552 92 AECLLALGEPESAL 105 (135)
T ss_pred HHHHHHcCCHHHHH
Confidence 99988888766653
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.10 E-value=3.9e-10 Score=101.10 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=104.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+......+......++|.++++.+++.++.-++ ..+.....+..++.|+.+-+++.+||+.|.++|
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~--------------~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE--------------ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc--------------ccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 444455677778889999999999999982211 122234455667889999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
.++|+++.++..+|.+|+.-..|+.|+.+|++|.+++|+|..++..+..+++..++..
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988776543
No 82
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.08 E-value=6.7e-10 Score=101.56 Aligned_cols=125 Identities=24% Similarity=0.228 Sum_probs=103.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+...|..+.+.|++++|++.|+++++ .+|.+..+...++.++..+|+++++.+.+...
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALE------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 345677889999999999999999999999 99999999999999999999999999999888
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
....|+++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...++.+....++.+++..
T Consensus 207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 207 LKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888899999999999999999999999999999999999999999999999998888777643
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=2.2e-09 Score=98.91 Aligned_cols=113 Identities=19% Similarity=0.088 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHH
Q 018089 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (361)
Q Consensus 226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g 305 (361)
++.+.++..+.++|...+ ...+.....|+++|.+|..+|++++|+.+++++++++|+++.+|+.+|
T Consensus 40 ~~~e~~i~~~~~~l~~~~--------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 105 (296)
T PRK11189 40 LQQEVILARLNQILASRD--------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG 105 (296)
T ss_pred hHHHHHHHHHHHHHcccc--------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 467888999999986221 022345788999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 306 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.++..+|++++|+..|+++++++|++..++..++.+....++.+++.
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999877666665553
No 84
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=2.7e-09 Score=98.71 Aligned_cols=119 Identities=12% Similarity=-0.032 Sum_probs=106.2
Q ss_pred HHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH--HHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL--KGALL 285 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~Ai~ 285 (361)
++..+.+..+|..+.+.+ ++++|+..+.+++. .+|.+..+|.+++.+..++++. .+++.
T Consensus 68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~------------------~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAE------------------DNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH------------------HCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 345667788888888887 68999999999998 8888899999999999999874 78899
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
.++++|+++|.|..||..++.++..+|+|++|++++.++++++|.|..++.....+...+
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988876544
No 85
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.06 E-value=1.4e-09 Score=110.70 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=70.3
Q ss_pred HHHhccHHHHhhhHHH----HHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 215 IKVFGNEHYKKQDYKM----ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
+..+|..++..|++++ |+..|+++++ .+|.+..++.++|.++.++|++++|+..++++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ------------------FNSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555553 4555555555 55556666666666666666666666666666
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
+.++|++..+++.+|.++..+|++++|++.|+++++.+|++......++.+...+++.
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence 6666666666666666666666666666666666666666654444444444444433
No 86
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.06 E-value=1.5e-09 Score=110.56 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=106.2
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG----ALLDTEFAMRD 293 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----Ai~~~~~al~~ 293 (361)
.|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++ |+..|++++++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 46677788888889888888888 677788899999999999999996 89999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+|++..++..+|.++..+|++++|+..++++++++|+++.++..++.+....++..++.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999888877766653
No 87
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-09 Score=103.29 Aligned_cols=122 Identities=22% Similarity=0.255 Sum_probs=106.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.-.+.++|-..|..+.|.+|+.++++++..++.... ..+.....+.|+|.++.+++.+++||..+++||
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-----------e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-----------EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-----------cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 455788999999999999999999999965543311 111466789999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.+.|.++.++..+|.+|.-+|+++.|++.|.+++-+.|+|..+...|..+-+.
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888888876554
No 88
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.05 E-value=4.4e-09 Score=81.79 Aligned_cols=105 Identities=25% Similarity=0.267 Sum_probs=94.6
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
..++....+-..|..+...|+.+.|++.|.++|. +-|..+.+|+|+|+++.-+|+.++|+.+
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDD 99 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHH
Confidence 3455677778889999999999999999999999 7778899999999999999999999999
Q ss_pred HHHHhhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 287 TEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 287 ~~~al~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
.++|+++.-.. ..++..+|.+|..+|+.+.|..+|+.|.++-.
T Consensus 100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 99999987544 56899999999999999999999999998854
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=6.1e-09 Score=84.84 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=88.7
Q ss_pred HH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 018089 259 LR-KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 259 ~~-~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 337 (361)
+. +......+.+|..++..|++++|...|+.++.+||.+...|+++|.++..+|+|++|+..|.+|+.++|+|+.....
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44 66777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018089 338 LAVAKKKIHERREQEKK 354 (361)
Q Consensus 338 l~~~~~~~~~~~~~~k~ 354 (361)
++.+.-.+++...+.+.
T Consensus 109 ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 109 AAECYLACDNVCYAIKA 125 (157)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 99999988877776443
No 90
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.99 E-value=4.5e-09 Score=110.10 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=108.2
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+..+|..+...|++++|++.|++++. ..|.+..++.+++.++.++|+ .+|+..+++++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVK------------------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 44566677788888888888888888887 667778888999999999999 88999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 360 (361)
.+.|++...+..+|.++..+|++++|+..|+++++++|.++.++..++.+....++..++ .+.+++|.
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 898 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL 898 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988887776655 44555554
No 91
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=6.7e-09 Score=107.84 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=107.1
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+...|..+...|++.+|++.|+++++ .+|.+..++.+++.++...|++++|+..+++++
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44578899999999999999999999999 788888899999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
..+|++.. ++.+|.++...|++++|+..|+++++++|++..++..++.+....
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999 999999999999999999999999999999999988888776543
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.95 E-value=6.4e-09 Score=92.44 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=104.8
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--------CCHHHHH
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--------GDLKGAL 284 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--------~~~~~Ai 284 (361)
..+..+|..++..|+|++|+..|+++++..+ .++....+++++|.++.++ +++++|+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~ 135 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---------------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAF 135 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---------------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 4678899999999999999999999998322 1112234788999999876 8899999
Q ss_pred HHHHHHhhcCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH
Q 018089 285 LDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKKK 344 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~-----------------~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~ 344 (361)
..+++++..+|++..++ +.+|.+|...|++++|+..|+++++..|++ +.++..++.+...
T Consensus 136 ~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 136 EAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 99999999999985442 467888999999999999999999997764 5788999999999
Q ss_pred HHHHHHHHH
Q 018089 345 IHERREQEK 353 (361)
Q Consensus 345 ~~~~~~~~k 353 (361)
+++..++.+
T Consensus 216 lg~~~~A~~ 224 (235)
T TIGR03302 216 LGLKDLAQD 224 (235)
T ss_pred cCCHHHHHH
Confidence 888777654
No 93
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=3.2e-08 Score=91.64 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=104.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCchh
Q 018089 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~~p~~~k 299 (361)
.+...+++++|+..+.++|. ++|.+..+|.+++.++..++ ++++++..+++++..+|.+..
T Consensus 46 ~l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 46 VYASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence 45667899999999999999 99999999999999999998 689999999999999999999
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 300 ALFRQGQAYMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 300 a~~~~g~~~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+|+.++.++..+++. ++++..++++++++|.|-.+|...+.+...++..+++
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999874 7889999999999999999999999999988876654
No 94
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=1.6e-08 Score=91.02 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=94.1
Q ss_pred HHHHHhccHH-HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 213 ~~~~~~G~~~-~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+..+..+ ++.|+|++|+..|++.++..| ..+....+++.+|.+|+.+|++++|+..|++++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP---------------~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYP---------------DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456667666 567999999999999998332 122336789999999999999999999999999
Q ss_pred hcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 292 ~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
...|++ ..+++.+|.++..+|++++|+..|+++++..|+...+.....
T Consensus 208 ~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 208 KNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 988874 789999999999999999999999999999999876544433
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.94 E-value=1.7e-08 Score=100.55 Aligned_cols=124 Identities=12% Similarity=0.102 Sum_probs=111.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+||.+|.+|++++|.+...++|+ .+|....+|..||.||-++|+.++|+...-.|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 477889999999999999999999999999 88888999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
-.++|.+..-|.+++.....+|.+++|.-+|.+|++++|.+.........+.++.++.+++.
T Consensus 200 AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am 261 (895)
T KOG2076|consen 200 AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM 261 (895)
T ss_pred HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH
Confidence 99999999999999999999999999999999999999999888888888888777776663
No 96
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=6.3e-09 Score=92.24 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.-+-+-|.-.++-++|++|+..|.+||.++|.++-.|.+||.+|.++|+|+.|++++++|+.+||+...++..|+.+...
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 33455667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 018089 345 IHERREQEKKQYRK 358 (361)
Q Consensus 345 ~~~~~~~~k~~~~~ 358 (361)
+.+.+++... |+|
T Consensus 162 ~gk~~~A~~a-ykK 174 (304)
T KOG0553|consen 162 LGKYEEAIEA-YKK 174 (304)
T ss_pred cCcHHHHHHH-HHh
Confidence 9888887666 665
No 97
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.94 E-value=5.6e-09 Score=74.89 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 340 (361)
..+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|.++|+++++++|++..+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999998887666544
No 98
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.3e-09 Score=97.59 Aligned_cols=123 Identities=23% Similarity=0.197 Sum_probs=112.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.++-+.||..|..|+|++|.+.|++||+ -+.....+++|+|..+-.+|+.++|+.++-+.
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 356678899999999999999999999998 67778899999999999999999999999988
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
-.+--+++.+++.++.+|..+.+..+|+++|-++..+-|+++.++..|+.+...-.+.-++
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence 8877789999999999999999999999999999999999999999999998776654443
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=1.3e-08 Score=103.19 Aligned_cols=124 Identities=7% Similarity=-0.005 Sum_probs=107.3
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
.+..++.+.++...+..+.+.+++++|+..++++++ ..|.+...++++|.++.++|++++|+
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHH
Confidence 333445677888999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHH
Q 018089 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIH 346 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~ 346 (361)
..|++++..+|++.+++..+|.++..+|+.++|...|++|+.+...-. .....+.++.....
T Consensus 175 ~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (694)
T PRK15179 175 ACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA 237 (694)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875433 33444455444433
No 100
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.92 E-value=1e-08 Score=111.12 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=100.4
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
...|..+.+.|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+..|+++++++|
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQ------------------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4568888999999999999999999 7777788899999999999999999999999999999
Q ss_pred CchhHHHHHHHH------------------------------------------HHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 296 DNVKALFRQGQA------------------------------------------YMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 296 ~~~ka~~~~g~~------------------------------------------~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
++..++..++.+ +...|++++|++.|+++++++|+++.
T Consensus 417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~ 496 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW 496 (1157)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 887776555443 44678999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018089 334 IKKELAVAKKKIHERREQE 352 (361)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~ 352 (361)
++..++.+....++.+++.
T Consensus 497 ~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHH
Confidence 8888888887777666653
No 101
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.92 E-value=1.3e-08 Score=106.61 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=107.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+...|..++..|+|++|+..|+++++ .+|....++..+|.+++..|++++|+..++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALA------------------IDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 466788899999999999999999999998 56666778899999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+..+|.+..+++.+|.++...|++++|+..|+++++++|.+..++..+..+....++..++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999988888887777665555444
No 102
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.91 E-value=2.5e-08 Score=95.24 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=73.6
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+..+|..+++.|++++|+..|+++++ ..|....+++.+|.++.++|++++|+..+++++..+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALA------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44566666677777777777777766 444455566667777777777777777777777666
Q ss_pred CCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 295 DDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 295 p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
|.+ ..++..++.+|..+|++++|+..++++++.+|+.... ..++.+....++.+
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~ 299 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE 299 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence 655 3455666667777777777777777777776655433 44555444444333
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=1.1e-08 Score=87.48 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=110.0
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.+...-+.+.|..++.+|+|++|...|++|+... .-+.-...|.|++.|.+++|+++.|..+++
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP----------------AYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----------------CCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 3456677888999999999999999999998722 234456789999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++|+++|++..+...++..++..|+|..|..++++...--+..++.+.+.-++.+.+++...+.
T Consensus 164 raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 164 RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999888888888888888888777655543
No 104
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.5e-08 Score=93.07 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=117.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.+++-.|..++-..+-+.|+.+|+++|++-+.. .........+.....+.+.|.-.++.|+|.+|-+.|.+|
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh------~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH------QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhh------hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 46778889999999999999999999999955432 122223456677788999999999999999999999999
Q ss_pred hhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 291 l~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
|.++|++ ++.|+++|.++..+|+.++|+.+++.|++|+|..-.++...+.|...+++++++-.
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 78899999999999999999999999999999888888888888888888777643
No 105
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=2.2e-08 Score=94.10 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=115.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.....+-.+...+..|+++.|...++..+. ..|.++..+..++.++++.++..+|++.++++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~------------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA------------------AQPDNPYYLELAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344566677788888889999988888887 77888899999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~ 358 (361)
+.++|+..-..+++|++|...|++.+|+..+++.+.-+|+|+..|..|+++...+++..++.......
T Consensus 367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777765544433
No 106
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.90 E-value=2e-08 Score=95.91 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKK 343 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~ 343 (361)
..+.++|.++.+++++++|+..++++++.+|++..+++.+|.++...|++++|++.|+++++.+|.+ ..++..+..+..
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 3566777788888888888888888888888888888888888888888888888888888877765 345566666666
Q ss_pred HHHHHHHH
Q 018089 344 KIHERREQ 351 (361)
Q Consensus 344 ~~~~~~~~ 351 (361)
..++.+++
T Consensus 261 ~~g~~~~A 268 (389)
T PRK11788 261 ALGDEAEG 268 (389)
T ss_pred HcCCHHHH
Confidence 55555544
No 107
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.89 E-value=1.4e-08 Score=110.11 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=72.4
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~ 296 (361)
..|..++..|++++|+..|+++++ .+|.+..++..+|.+++++|++++|+..++++++++|+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVR------------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 458888888999999999999988 55666666777777777777777777777777766665
Q ss_pred chhH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 297 NVKA--------------LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 297 ~~ka--------------~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+... ...+|.++...|++++|+..|+++++++|++..++..++.+....++.++
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4321 12234445555555555555555555555555555555555444444333
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.89 E-value=4.2e-09 Score=74.41 Aligned_cols=67 Identities=31% Similarity=0.370 Sum_probs=62.2
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
++.|+|++|+..+++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++..++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998888877654
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.89 E-value=3.5e-09 Score=74.15 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=59.1
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~ 296 (361)
.+|..++..|+|++|++.|+++++ ..|.+..++..+|.|+..+|++++|+..+++++.++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 578999999999999999999999 77889999999999999999999999999999999998
Q ss_pred ch
Q 018089 297 NV 298 (361)
Q Consensus 297 ~~ 298 (361)
++
T Consensus 64 ~p 65 (65)
T PF13432_consen 64 NP 65 (65)
T ss_dssp -H
T ss_pred CC
Confidence 74
No 110
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.87 E-value=1.1e-07 Score=84.84 Aligned_cols=130 Identities=19% Similarity=0.196 Sum_probs=105.1
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+...|..++.+|+|++|++.|++.+...| ..+....+.+++|.+|+++++|++|+..+++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---------------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55678899999999999999999999998443 234555667999999999999999999999999
Q ss_pred hcCCCc---hhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHH
Q 018089 292 RDGDDN---VKALFRQGQAYMALN---------------D---VDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHE 347 (361)
Q Consensus 292 ~~~p~~---~ka~~~~g~~~~~~~---------------~---~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~ 347 (361)
+++|++ ..++|.+|.++..++ + -.+|+..|++.++.-|+.+ ++...+..++.++.+
T Consensus 97 ~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 97 RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 999987 568999999876554 1 2478899999999999864 567777777777776
Q ss_pred HHHHHHHHH
Q 018089 348 RREQEKKQY 356 (361)
Q Consensus 348 ~~~~~k~~~ 356 (361)
.+-.-.+.|
T Consensus 177 ~e~~ia~~Y 185 (243)
T PRK10866 177 YELSVAEYY 185 (243)
T ss_pred HHHHHHHHH
Confidence 665544443
No 111
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.3e-08 Score=89.09 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=108.0
Q ss_pred chhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CH
Q 018089 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DL 280 (361)
Q Consensus 204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~ 280 (361)
.+...++.++.|.-+|..+...+++..|...|.+|++ +.|.++..+..+|.+++.+. .-
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCccc
Confidence 3445566788999999999999999999999999999 88888999999999887763 57
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.++...+++++.+||+++.+.+.+|..+++.|+|.+|+..++..+.+.|.+..-...+......
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999887666655554433
No 112
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.85 E-value=4.2e-08 Score=78.62 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=96.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+...|...++.|+|.+|++.++....-.+ ..+....+.+.++-+|++.++|++|+..+++-|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 46688899999999999999999999877443 455667789999999999999999999999999
Q ss_pred hcCCCch---hHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 018089 292 RDGDDNV---KALFRQGQAYMALND---------------VDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 292 ~~~p~~~---ka~~~~g~~~~~~~~---------------~~~A~~~~~~a~~l~p~~~~~~~ 336 (361)
+++|.+. -|+|.+|.+++.+.. ..+|..+|++.++.-|+...+..
T Consensus 75 rLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 75 RLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999885 589999999999887 88999999999999998876543
No 113
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=2.8e-08 Score=84.10 Aligned_cols=129 Identities=14% Similarity=0.077 Sum_probs=113.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.|.-+.+.|+.+-.-|-+..|.--+.+++. +.|..+.+++.+|.-+...|+|+.|.+.++..
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~ 125 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 125 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence 688899999999999999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG--GIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~--~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
+++||.+--++.++|.+++.-|+|+-|.+++.+..+-||+|+ ..|..+.+.+..-++....-.++|.
T Consensus 126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 5666666655554444444444443
No 114
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.80 E-value=1.1e-07 Score=70.00 Aligned_cols=87 Identities=31% Similarity=0.382 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
+++++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|+..|++++.+.|.+..++..++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999998999999888888
Q ss_pred HHHHHHH
Q 018089 346 HERREQE 352 (361)
Q Consensus 346 ~~~~~~~ 352 (361)
++.....
T Consensus 82 ~~~~~a~ 88 (100)
T cd00189 82 GKYEEAL 88 (100)
T ss_pred HhHHHHH
Confidence 7766654
No 115
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.80 E-value=1.4e-07 Score=82.00 Aligned_cols=130 Identities=21% Similarity=0.219 Sum_probs=101.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..++..|..++..|+|.+|+..|++.+...+ ..+....+.+.+|.++++.++|..|+..+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467789999999999999999999999998554 34566778999999999999999999999999
Q ss_pred hhcCCCch---hHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNV---KALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 291 l~~~p~~~---ka~~~~g~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~~~~k 353 (361)
+...|++. .++|.+|.+++.+. ...+|+..|+..++.-|+.+ .+...+..+...+.+.+-.--
T Consensus 69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999874 69999999987653 24589999999999999875 556666777777666555433
Q ss_pred HH
Q 018089 354 KQ 355 (361)
Q Consensus 354 ~~ 355 (361)
+.
T Consensus 149 ~~ 150 (203)
T PF13525_consen 149 RF 150 (203)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 116
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.79 E-value=6.1e-08 Score=100.74 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=100.4
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+|..+...|++++|++.+++++. ..|.+..++.++|.++..+|++++|+..+++++.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4456788899999999999999999999 7788889999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
++|++..+++.+|.++..++++++|...++++++..|+++.+...-
T Consensus 422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999765443
No 117
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.79 E-value=7.8e-08 Score=79.52 Aligned_cols=104 Identities=26% Similarity=0.290 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHhhcCCC
Q 018089 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG----------DLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~----------~~~~Ai~~~~~al~~~p~ 296 (361)
-|+.|.+.|+.... .+|.+...++|=|.+++.+. .+++|+.-+++||.++|+
T Consensus 6 ~FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~ 67 (186)
T PF06552_consen 6 FFEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN 67 (186)
T ss_dssp HHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc
Confidence 36788888988887 89999999999998888763 367899999999999999
Q ss_pred chhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 297 NVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 297 ~~ka~~~~g~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
...|++.+|.+|..++. |++|..+|++|..++|+|...+..|....+.-+-.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh 130 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELH 130 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHH
Confidence 99999999999998764 78999999999999999999999998876554433
No 118
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.79 E-value=1.6e-08 Score=95.26 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 258 ~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka---~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
..+|.+...|+|+|.+|+++|+|++|+..|++||+++|++..+ ||++|.+|..+|++++|+++|++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999999865 999999999999999999999999998
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=3.6e-08 Score=94.13 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=125.2
Q ss_pred chhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc--------------------------c--------ccC
Q 018089 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC--------------------------W--------EKE 249 (361)
Q Consensus 204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~--------------------------~--------~~~ 249 (361)
...+.++.+++|..+|......++=..|+..+++|+++=+.- | ...
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 344556679999999999999999999999999998865400 0 000
Q ss_pred ----CCCcc---------ch----------hhHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 250 ----GIDEG---------KS----------SSLRK--TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 250 ----~~~~~---------~~----------~~~~~--~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
....+ .. ....+ .++.+..-||.+|.-.++|++|+.+++.||..+|++...|.|+
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 00000 00 11233 5677889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089 305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
|-.+..-.+.++|+..|.+|++|-|+...++.+|+...-.++.++++.+....
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766543
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=1.4e-07 Score=79.46 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=91.9
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
..+.+|-.++|..+...+.+.++. ........+++++|.++..++++++|+..+++++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 68 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPT----------------TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP 68 (168)
T ss_pred cccccccccccccchhhhhHhccC----------------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence 345566666677777777555431 1344567889999999999999999999999999987653
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 298 ---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 298 ---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
+.+++++|.++..+|++++|+..|+++++++|.+...+..++.+...+.
T Consensus 69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999999988888888877433
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=3.4e-08 Score=96.53 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=111.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.+.+..|+..+++++|.+|.++++.+++ ++|.....|+++|.|++++++++.|..+|..+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 355667788888899999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+.++|++..+|.+++.+|..+++-.+|-..+.+|++.+-++..+|.+...+.-...+.+.+
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 9999999999999999999999999999999999999988888888877777766665554
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=1.1e-07 Score=89.81 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
+...|..++..++|++|+..|++||+++|++..+|+.+|.+|..+|++++|+.+++++++++|.+..++..++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45668888999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHH
Q 018089 347 ERREQEK 353 (361)
Q Consensus 347 ~~~~~~k 353 (361)
++.++..
T Consensus 85 ~~~eA~~ 91 (356)
T PLN03088 85 EYQTAKA 91 (356)
T ss_pred CHHHHHH
Confidence 8777644
No 123
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.72 E-value=3.4e-08 Score=71.80 Aligned_cols=67 Identities=30% Similarity=0.419 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GD---DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p---~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
|....++.|+|.+|..+|+|++|+.++++++.+ .+ .-+.+++++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567789999999999999999999999999965 22 23789999999999999999999999999986
No 124
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.72 E-value=1.5e-07 Score=97.19 Aligned_cols=109 Identities=13% Similarity=0.017 Sum_probs=57.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+...+..+...+++|+|+.|+..|+++++. +|........++.++..+|++++|+.+|++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~------------------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA------------------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 456788899999999999999999999983 33332111144444444444444444444444
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.-.|.+..++..+|.++..+|+|++|++.|+++++++|+++.++..+
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 11112222222223344444444444444444444444444444433
No 125
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.71 E-value=3.6e-08 Score=69.56 Aligned_cols=67 Identities=24% Similarity=0.192 Sum_probs=60.8
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHH
Q 018089 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~ 301 (361)
+++.|+|++|++.|++++. .+|.+..++..+|.||+++|++++|...+++++..+|+++..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 4678999999999999999 8899999999999999999999999999999999999987777
Q ss_pred HHHHH
Q 018089 302 FRQGQ 306 (361)
Q Consensus 302 ~~~g~ 306 (361)
.-++.
T Consensus 63 ~l~a~ 67 (68)
T PF14559_consen 63 QLLAQ 67 (68)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66664
No 126
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.71 E-value=6.9e-08 Score=94.93 Aligned_cols=103 Identities=24% Similarity=0.191 Sum_probs=68.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTEF 289 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~--~~~~ 289 (361)
+..++..|..+..+|++.+|.+.|..|+. ++|..+.+...+|.|+++.|+-.-|.. ....
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 44555666666666666777777766666 666666666666777766666555555 6666
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
|+++||.+.++||.+|.++..+|+.++|.++|.-|++|++.+|
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 6677777777777777777777777777777776666666654
No 127
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.8e-08 Score=90.01 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=104.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC---------CCCccch-------hhHHHHHHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---------GIDEGKS-------SSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~~~nla~~~ 274 (361)
.+.-+..++.++-..+++++|+++|+.++++-+....-. ....|.. ..+.-.++.+++|+|.|+
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 455555566666666666666666666665332110000 0000000 114556778999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 275 LKLGDLKGALLDTEFAMRDGD--D-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~~~p--~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+..++++-++..+++|+.... + -+..||++|.+....|++..|.++|+-|+.-||++.+++.+|+.++.+..+...+
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 999999999999999997643 2 3789999999999999999999999999999999999999999998887765554
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=1.9e-07 Score=81.39 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=101.2
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
....+.++-.|+=+.++....+++. ..+.+..+..-.+...+..|+|.+|+..+.+|.+++|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~------------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI------------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc------------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 3455555556666666666565544 4555666666688999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
+++++|.-+|.+|.++|++++|...|.+++++.|+++.+..+++-..-...+.+.+++..-
T Consensus 132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 132 TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877777776665443
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=3.1e-07 Score=86.42 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=97.8
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
-..|..+++.++.++|++.+++++. +.|....+..|+|.++++.|++.+|+...+..+.-+|
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 3457778899999999999999999 8888899999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
+++..|..+|++|..+|+-.+|...+...+.+...-..+...+..+++..
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999998888888888888887776666666666555554
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.68 E-value=2.3e-07 Score=78.47 Aligned_cols=89 Identities=22% Similarity=0.310 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
.++....+++++|.++...|++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..|+++++++|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 456777889999999999999999999999999887653 57999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 018089 336 KELAVAKKKIHE 347 (361)
Q Consensus 336 ~~l~~~~~~~~~ 347 (361)
..++.+...+.+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 888887766544
No 131
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1e-07 Score=90.10 Aligned_cols=124 Identities=21% Similarity=0.169 Sum_probs=107.7
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc---CCHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---GDLK 281 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~ 281 (361)
.-+.++.++.++..||..|..+.+..|+..|.+++. ..|....+|.|+|.++++. ++--
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~~ 428 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDSY 428 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccHH
Confidence 456777899999999999999999999999999998 7778889999999999986 5788
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
.|+.+|..|++++|...||+|+++.++..++++.+|+.+...+....|.+.........+.+.+.
T Consensus 429 ~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~ 493 (758)
T KOG1310|consen 429 LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS 493 (758)
T ss_pred HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence 89999999999999999999999999999999999999998888888866655444444444443
No 132
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=7.5e-08 Score=68.94 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=64.4
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ 298 (361)
...+++.++|++|++++++++. ++|.++.++..+|.|+.++|++.+|+.+++++++..|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 4578899999999999999999 8999999999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 018089 299 KALFRQGQ 306 (361)
Q Consensus 299 ka~~~~g~ 306 (361)
.+..-++.
T Consensus 64 ~~~~~~a~ 71 (73)
T PF13371_consen 64 DARALRAM 71 (73)
T ss_pred HHHHHHHh
Confidence 87766553
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=2.6e-07 Score=75.80 Aligned_cols=96 Identities=23% Similarity=0.197 Sum_probs=52.9
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
.....+|..++..|+|++|+..|++++...+ .......+.+++|.+++.+|+|++|+..++. +.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---------------d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~ 112 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAP---------------DPELKPLARLRLARILLQQGQYDEALATLQQ-IP 112 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-cc
Confidence 3445556666666666666666666655110 1223344555666666666666666666644 22
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
-.+..+.++..+|.+|...|++++|+..|++|
T Consensus 113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 33334455556666666666666666666655
No 134
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.65 E-value=1.7e-07 Score=68.12 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=62.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..++..|+|++|+.+|++++++.... ....+..+.++.|+|.|+..+|++++|++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788999999999999999999999999964322 113556789999999999999999999999999
Q ss_pred Hhhc
Q 018089 290 AMRD 293 (361)
Q Consensus 290 al~~ 293 (361)
++++
T Consensus 72 al~i 75 (78)
T PF13424_consen 72 ALDI 75 (78)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9975
No 135
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1e-07 Score=95.86 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=98.5
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--C
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG--D 295 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~--p 295 (361)
+|-++-.+|+|..|+..|.+..+ ........|.|+|.||+.+|+|..|++.|+.+++.. .
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrE------------------a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~ 713 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVRE------------------ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK 713 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHH------------------HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46667777778888877777766 344566889999999999999999999999999743 4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+++..+..+|.+++..|.+.+|.+++.+|+.+.|.|..+..+++.+..++.+.-.
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l 768 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL 768 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999998887765444
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.64 E-value=4.2e-07 Score=71.20 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL 338 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l 338 (361)
..++.+|..++++|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467999999999999999999999999999876 5799999999999999999999999999999986 5678888
Q ss_pred HHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+...+++..+..
T Consensus 83 ~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 83 GMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHhCChHHHH
Confidence 88877766655543
No 137
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.64 E-value=1.4e-07 Score=86.10 Aligned_cols=124 Identities=21% Similarity=0.170 Sum_probs=97.1
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+......+...++++++.+.++++.... ..+.+..+|..+|.++.+.|++++|+.++++|++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELP----------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T-------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhcc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334455667788899999999999976511 2346778899999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++|++..++..++.++...|+++++.+.++...+..|.++..+..++.+...+++.+++.
T Consensus 175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999998999999999999999888877663
No 138
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.63 E-value=6.7e-07 Score=70.39 Aligned_cols=99 Identities=20% Similarity=0.110 Sum_probs=85.9
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+++.|..+-..|+.++|+..|++++..-. ..+....++.++|.++..+|++++|+..+++++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---------------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL---------------SGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999998210 2345567899999999999999999999999999
Q ss_pred cCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 293 DGDD---NVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 293 ~~p~---~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..|+ +.....-++.++..+|++++|+..+-.++.
T Consensus 67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8887 778888899999999999999999987764
No 139
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.62 E-value=5.6e-07 Score=90.67 Aligned_cols=122 Identities=23% Similarity=0.279 Sum_probs=110.4
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+++.+|-+|+|..+...+.-++.... ..+..+..++.+|.+|..+|+|++|-.+|.+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3466677889999999999999999999988331 4556777899999999999999999999999
Q ss_pred HhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 290 al~~~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
++..+|++ .-+++.+|+.|...|+++.|+.+|++.++..|++.+....|+.+.....
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 99999998 8999999999999999999999999999999999999999999888774
No 140
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.57 E-value=3.6e-07 Score=86.25 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=62.1
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHH---HHHHHHHHHHhcCCHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ---IFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~Ai~ 285 (361)
+..+..+.++|..+++.|+|++|+..|++||+ ++|.+.. +|+|+|.||.++|++++|+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34578899999999999999999999999999 7777764 59999999999999999999
Q ss_pred HHHHHhhcC
Q 018089 286 DTEFAMRDG 294 (361)
Q Consensus 286 ~~~~al~~~ 294 (361)
++++||++.
T Consensus 134 ~LrrALels 142 (453)
T PLN03098 134 CLRTALRDY 142 (453)
T ss_pred HHHHHHHhc
Confidence 999999983
No 141
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.56 E-value=9.2e-07 Score=86.04 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=108.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..++..|..|...++|.+|+..|++|+.+..... -..+|..+..+.|||..|.+.|+|++|..+|++|
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~----------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF----------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 345556789999999999999999999999664321 1257788899999999999999999999999999
Q ss_pred hhcC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PND---GGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~--------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+++- |.-...+..++.++..++++++|+.+|++++++- +.| +.+..+|+.+....++.++++
T Consensus 310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 9653 3346788889999999999999999999998873 223 567888888888888877764
No 142
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.53 E-value=1.1e-06 Score=77.55 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=98.6
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
+..++.+..+++.|+|..|...|..-+.--| -.+....+++-||.+++.+|+|++|...|..+++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---------------~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYP---------------NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4488999999999999999999999998433 3456678899999999999999999999999999
Q ss_pred cCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 293 DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 293 ~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
-.|++ +++++.+|.+...+|+-++|...|+++++--|....+...-.
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 98877 567999999999999999999999999999999876654433
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.3e-06 Score=74.36 Aligned_cols=138 Identities=14% Similarity=0.045 Sum_probs=92.7
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc--------------cccCCCCccc--hhhHHHHHHHHHHHHHHHHHhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDIC--------------WEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~--------------~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l 277 (361)
-.+-.|+.+-..|+|++|+++|+..|+--|+- .......++. ....-+.+..+|.-+|..|+.+
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 34556888899999999999999888711100 0000000000 0122345667788888888888
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
++|++|.=++++.+-+.|.++-.+.|+|.+++.+| +++-|..+|.++++++|.+...+..+-.+-..+.+.-+.
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 88888888888888888888888888888877766 566777888888888887766666666666666544443
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=1.4e-06 Score=89.61 Aligned_cols=119 Identities=17% Similarity=0.129 Sum_probs=101.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
..++..+...+...+++++|+...+.+++ ..|....+|+.+|.++++.+++.++... .++
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--NLI 90 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence 45667788888899999999999999998 8888899999999999998887777665 555
Q ss_pred hcCCCch-------------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNV-------------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 292 ~~~p~~~-------------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.+-+.+. .|++.+|.||..+|++++|.+.|+++++++|+|+.+..+++-..... +.+++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 5555444 89999999999999999999999999999999999999999887777 44444
No 145
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=4.1e-06 Score=75.21 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=102.6
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
++..+-++|...++|++|++.-++...+-+. ...-..+..|+-+|..++...+.+.|+....+|+..
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-------------~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQ-------------TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-------------cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 3444566677777777777776666552211 144456678899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
+|.++.|-.-+|.+....|+|+.|++.++++++-||+. +++...|.++...+.+..+.....
T Consensus 210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999975 578888888888877766654433
No 146
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.47 E-value=4.9e-06 Score=80.31 Aligned_cols=126 Identities=14% Similarity=0.067 Sum_probs=105.8
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.+.+......|...+..|+|+.|.+...++.+ ..|.....+...|.++.++|+++.|..++.
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~ 142 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD------------------HAAEPVLNLIKAAEAAQQRGDEARANQHLE 142 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34577778889999999999999999999887 445555667778888999999999999999
Q ss_pred HHhhcCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~~-ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++.+..|++. .+....+.++...|++++|.+.+++..+..|+++.+...+..+....++..+..
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 9999888775 455556899999999999999999999999999999999999888888776543
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=4.6e-06 Score=68.31 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=103.4
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.+.+...+......+..+++..+...+++.+.-.+ ..+....+.+.+|.+++..|++++|+..++
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~ 72 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALE 72 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34566667777777788999998888888877211 233456788999999999999999999999
Q ss_pred HHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089 289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 289 ~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
.++...|+. ..+.+++|.++...|++++|+..++. ..-.+-.+.+...++.+....++..++ ++.|+
T Consensus 73 ~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A-~~~y~ 142 (145)
T PF09976_consen 73 KALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA-RAAYQ 142 (145)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH-HHHHH
Confidence 999987665 56899999999999999999999966 333445667888888888887777666 34443
No 148
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.46 E-value=2.8e-06 Score=82.75 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=99.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.......+|..++.+|+|+.|+..+++|++.+...+- -..+.......++|.+|+.+++|.+|+..|++|
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G----------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG----------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC----------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455566999999999999999999999996432211 024555666678999999999999999999999
Q ss_pred hhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHH---HHHHHHHHHHHH
Q 018089 291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELA---VAKKKIHERREQ 351 (361)
Q Consensus 291 l~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~-----p~~~~~~~~l~---~~~~~~~~~~~~ 351 (361)
+.+ +|.-+-++.++|.+|...|+|++|..++++|+++- ...+.+...+. .+...+.+.+++
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 954 55568899999999999999999999999999874 23444444444 344444444444
No 149
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.43 E-value=2e-06 Score=88.93 Aligned_cols=118 Identities=10% Similarity=0.061 Sum_probs=98.0
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+...|..+...|+|++|++.|+++++ .+|.+..++..++.++..+++.++|++.+++++
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 34455568888899999999999999999 888888888899999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
..+|.+... ..++.++..++++.+|++.|+++++++|++..+...+..+...+.-.
T Consensus 164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 999985544 44455565677887799999999999999999888877766665533
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.43 E-value=4.3e-07 Score=67.02 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 277 LGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 277 l~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
+++|+.|+..+++++..+|. +...++.+|.||+.+|+|++|+..+++ .+.+|.+......++.+.-.+++.+++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 577888899999999999999999999 889999989999999999999998887654
Q ss_pred H
Q 018089 355 Q 355 (361)
Q Consensus 355 ~ 355 (361)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 151
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=8.9e-06 Score=78.19 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=99.6
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHH-HHHHHHHHHhcCCHHHHHHH
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI-FTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nla~~~~~l~~~~~Ai~~ 286 (361)
+.+.+......|...+..|+|+.|.+...++-+ ..+ .+.+ +...+....++|+++.|..+
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~------------------~~~-~p~l~~llaA~aA~~~g~~~~A~~~ 140 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNAD------------------HAE-QPVVNYLLAAEAAQQRGDEARANQH 140 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------ccc-chHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344677778899999999999999977776544 111 1233 44445556899999999999
Q ss_pred HHHHhhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 287 ~~~al~~~p~~~k-a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.++.+.+|++.- .....+..+...|++++|++.++++.+.+|+++.+...+..+....++..+..
T Consensus 141 l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 141 LERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999998754 34455899999999999999999999999999999999999888887776654
No 152
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.40 E-value=4.3e-06 Score=83.84 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=96.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
....++.+|.++-.+|+..+|+.....|.. ++|.+...|..++....++|++.+|+-+|.+|
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 466788899999999999999999999988 88888899999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
|..+|.+.+.+++++..|..+|++..|.+.|.+++.++|
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1.2e-05 Score=69.97 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=77.6
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALL 285 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Ai~ 285 (361)
+...++|.+++..|+..++|++|.-+|++.+= .+|..+.++..+|.+++-+| ++.-|..
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll------------------~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL------------------IQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44688999999999999999999999999998 88999999999999988876 6788999
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCH
Q 018089 286 DTEFAMRDGDDNVKALFRQGQAYMALNDV 314 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~ 314 (361)
+|.+++.++|.+..+++.+-.|-..+-+.
T Consensus 213 yy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887776654433
No 154
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.40 E-value=3.1e-06 Score=83.59 Aligned_cols=121 Identities=14% Similarity=0.078 Sum_probs=109.3
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..|...+..+.+.+.-++|..+..+|-. +.+.....|+.+|.++...|++.+|.+.|..|+.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 3445556666677778888889999987 7889999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVE--SFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+||+++.+..-+|.++...|+..-|.. .+..+++++|.|.++|..|+.+.+..++.+++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 999999999999999999998888888 99999999999999999999999999887754
No 155
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.38 E-value=3.9e-06 Score=81.44 Aligned_cols=120 Identities=15% Similarity=0.190 Sum_probs=104.2
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.++...-..|..++|..-+..-++.|. ..|.......-.|.....+|+-++|...+..+++.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~------------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK------------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH------------------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 456667778888999999988888888 66667777788888888999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
|+.+.-.|..+|.++..-++|++|+.+|+.|++++|+|..++.-|+.++..+++.+--
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999999999999999999999999998888876543
No 156
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=2.1e-06 Score=81.03 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=88.7
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+...|..+...|++++|+..++++++ ..|.+..++..+|.++..+|++++|+..+++++
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 34556778899999999999999999999 777778899999999999999999999999999
Q ss_pred hcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 292 RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 292 ~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
...|.. ...+..+|.++..+|++++|+..|++++...|
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 988743 24567899999999999999999999987776
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=98.34 E-value=4.7e-06 Score=78.97 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHH---HhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhcC
Q 018089 227 DYKMALRKYRKAL---RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---------GDLKGALLDTEFAMRDG 294 (361)
Q Consensus 227 ~y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~~Ai~~~~~al~~~ 294 (361)
..+.|+..+.+|+ . ++|....+|.-+|.|++.. .+-.+|++..++|++++
T Consensus 273 ~~~~Al~lf~ra~~~~~------------------ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSD------------------IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHHHHHHhhccc------------------CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 5678999999999 5 8888899999999998875 23567889999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|.++.|++.+|.++...++++.|...|++|+.++|+.+.++...+.+.-..++.+++.
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999998888666555555443
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=9.4e-06 Score=72.65 Aligned_cols=93 Identities=22% Similarity=0.158 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
.+|.++.-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++... .-.+|.+.|++++++||.|..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 899999999999999999999999999999999999999999999999877665 34689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018089 336 KELAVAKKKIHERREQ 351 (361)
Q Consensus 336 ~~l~~~~~~~~~~~~~ 351 (361)
..|+...-..++++++
T Consensus 231 ~lLA~~afe~g~~~~A 246 (287)
T COG4235 231 SLLAFAAFEQGDYAEA 246 (287)
T ss_pred HHHHHHHHHcccHHHH
Confidence 9999988877777665
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.28 E-value=1.3e-05 Score=63.12 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKEL 338 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l 338 (361)
.+.+++|.++-.+|+.++|+..|+++++...+. ..++..+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999975443 689999999999999999999999999999888 77777777
Q ss_pred HHHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQEK 353 (361)
Q Consensus 339 ~~~~~~~~~~~~~~k 353 (361)
+.+.....+.+++-.
T Consensus 82 Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 82 ALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHCCCHHHHHH
Confidence 776666666655543
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.27 E-value=1.2e-05 Score=79.30 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=89.2
Q ss_pred hHHHHHhccHHHHh---hhHHHHHHHHHHHHHhhhhcc--------------ccCCCCccchh----------h--HHHH
Q 018089 212 VDSIKVFGNEHYKK---QDYKMALRKYRKALRYLDICW--------------EKEGIDEGKSS----------S--LRKT 262 (361)
Q Consensus 212 a~~~~~~G~~~~~~---g~y~~A~~~y~~al~~~~~~~--------------~~~~~~~~~~~----------~--~~~~ 262 (361)
|-.+.-.|..++.. +++..|+.++++|+++-|... ........... . ..+.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 44556667777654 458899999999999765210 00111111100 0 1333
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
.+.+|.-+|..+...|++++|...+++|++++| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 446778888888889999999999999999999 5789999999999999999999999999999998874
No 161
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.27 E-value=9.5e-06 Score=76.51 Aligned_cols=141 Identities=10% Similarity=-0.081 Sum_probs=107.2
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc-------------cCCCCccc------hhhHHHHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------------KEGIDEGK------SSSLRKTKSQIFTNSSA 272 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~nla~ 272 (361)
.+.....|..++..|++++|++.++++++..|.... .......- .....|.....+.++|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 344566788999999999999999999986542210 00000000 01233455567778999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHHHHH
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG----IKKELAVAKKKIHER 348 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~----~~~~l~~~~~~~~~~ 348 (361)
++..+|++++|+..++++++++|++..++..+|.+++..|++++|+..+++++.+.|.+.. .+..++.+....++.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999999885433 344677777777666
Q ss_pred HHHH
Q 018089 349 REQE 352 (361)
Q Consensus 349 ~~~~ 352 (361)
.++.
T Consensus 203 ~~A~ 206 (355)
T cd05804 203 EAAL 206 (355)
T ss_pred HHHH
Confidence 6554
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=4.6e-06 Score=79.05 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=55.5
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
++..+...++-.+|++...++|. ..|.+..++...|..+++.++++.|+..+++|+.+.|++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~------------------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALK------------------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44444455555566666666665 444555666666666666666666666666666666666
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
.+.|+.++.+|..+|++++|+..+..+--
T Consensus 268 f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 268 FETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 66666666666666666666655554433
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=98.26 E-value=1.4e-05 Score=65.62 Aligned_cols=95 Identities=11% Similarity=-0.054 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
+.+......+..|--++..|++++|...++-....+|.+.+-|+.+|.|+..+++|++|+..|..|..++++|+......
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 56666777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQEK 353 (361)
Q Consensus 339 ~~~~~~~~~~~~~~k 353 (361)
+.|.-.+++...+.+
T Consensus 112 gqC~l~l~~~~~A~~ 126 (165)
T PRK15331 112 GQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHHHHhCCHHHHHH
Confidence 998888887766643
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.26 E-value=2.2e-05 Score=65.27 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=96.9
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.......+|+.+.+.|++.+|..+|++++. .+-..+..++..+|...+.++++..|...+++.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qals-----------------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALS-----------------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----------------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455677899999999999999999999987 233456778899999999999999999999999
Q ss_pred hhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 291 MRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 291 l~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.+.+|. ++....-.|.++..+|.+++|...|+.++...|+ +.......+...+
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~ 205 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK 205 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 999985 4788888999999999999999999999999885 3344444443333
No 165
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.26 E-value=9.1e-06 Score=78.46 Aligned_cols=127 Identities=16% Similarity=0.022 Sum_probs=99.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI--FTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
........|..+...|++++|++.++++++ ..|.+... ..-+....+..++...++..++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------------------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK------------------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh------------------hCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 456677789999999999999999999998 33333321 1223334455688899999999
Q ss_pred HHhhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089 289 FAMRDGDDNV--KALFRQGQAYMALNDVDAAVESFE--KALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 289 ~al~~~p~~~--ka~~~~g~~~~~~~~~~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
++++.+|+++ ..+..+|.+++.+|++++|.++|+ ++++.+|++.. ...++.+...+++.+++ .+.|+
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A-~~~~~ 394 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA-AAMRQ 394 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHH
Confidence 9999999999 888899999999999999999999 58888887665 44888888888776555 44444
No 166
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=2.2e-05 Score=70.64 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=98.6
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~ 287 (361)
.++.|.-+.+++..+....+.+.|.....+|+. .+|.++.+-.-+|.+++..|+|+.|++.+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ------------------ADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------------------hCccceehhhhhhHHHHhccchHHHHHHH
Confidence 345677788889999999999999999999999 88899999999999999999999999999
Q ss_pred HHHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 288 EFAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 288 ~~al~~~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
+.+++.||+. +.+.-.+..||..+|+.++.+..+.++.+..++...
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 9999999988 678889999999999999999999999999876543
No 167
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.25 E-value=2.5e-06 Score=77.10 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
.--.|..|+++|.|++||.+|.+++.++|.|+-.+.++|.+|+.++.|..|..++..|+.|+-....++...+.++..++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999998777777777777777776
Q ss_pred HHHHHH
Q 018089 347 ERREQE 352 (361)
Q Consensus 347 ~~~~~~ 352 (361)
..+++.
T Consensus 180 ~~~EAK 185 (536)
T KOG4648|consen 180 NNMEAK 185 (536)
T ss_pred hHHHHH
Confidence 655553
No 168
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.9e-06 Score=77.06 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=89.5
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+.+++..+.+.++|..|+..-.++|+ ++|.++.+++.+|.+++.+++|+.|+.++++|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3467789999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHH-HHHHHHHHhhCCC
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAA-VESFEKALKLEPN 330 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A-~~~~~~a~~l~p~ 330 (361)
++|.|-.+...+..+.....++.+. .+.|.+.+..-+.
T Consensus 320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999988888899888888877665 6778888776553
No 169
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.1e-06 Score=79.02 Aligned_cols=126 Identities=22% Similarity=0.131 Sum_probs=115.3
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
++.+..|...|..|+--+++.+|.++|.||-. +++....+|...|..+...++.++|+..|.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATT------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh------------------cCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence 34567789999999999999999999999988 899999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.|-++-|..-.-.+.+|.=|..++.++.|...|..|+.+.|+++.+...++-+.-..++..++.
T Consensus 371 tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 371 TAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred HHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999998888776666665553
No 170
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=1.6e-06 Score=77.86 Aligned_cols=84 Identities=11% Similarity=0.091 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.-|.++..+...|.++..++++++|++.|..++.++|.++++.--.|.-|+.-++.|-|+.+|++.+.+--.+++...++
T Consensus 285 ~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 285 SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 45666677777777777777777777777777777777777777777777777777777777777777766677666666
Q ss_pred HHHH
Q 018089 339 AVAK 342 (361)
Q Consensus 339 ~~~~ 342 (361)
+.|-
T Consensus 365 gLCC 368 (478)
T KOG1129|consen 365 GLCC 368 (478)
T ss_pred HHHH
Confidence 6553
No 171
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.21 E-value=2.2e-06 Score=51.38 Aligned_cols=32 Identities=38% Similarity=0.797 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
++|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.21 E-value=1.1e-05 Score=79.53 Aligned_cols=54 Identities=15% Similarity=-0.049 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh
Q 018089 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k 299 (361)
++++|...+++|++ ++| +..+|..+|.++...|++++|++.|++|++++|....
T Consensus 435 ~~~~A~~~l~rAl~------------------L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAID------------------LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHH------------------cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 45666666666665 677 4678999999999999999999999999999998875
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.19 E-value=2.1e-05 Score=71.96 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=86.1
Q ss_pred hhHHHHHhccHHHHh-hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
.+..+..+|..+... ++++.|+++|++|+++...- ........++.++|.++.++++|++|+..|++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 577788889999998 99999999999999976422 12334567889999999999999999999999
Q ss_pred HhhcCCC------chh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 290 AMRDGDD------NVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 290 al~~~p~------~~k-a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
++...-+ +++ .+++.+.|++.+||+..|...+++....+|.-
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9875322 233 45678889999999999999999999999853
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.18 E-value=2e-05 Score=70.96 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=74.2
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 018089 264 SQIFTNSSACK-LKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKK 336 (361)
Q Consensus 264 ~~~~~nla~~~-~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~ 336 (361)
...+++.|..+ ++.++|++|+..|+..+...|++ +.++|++|.+|+..|++++|+..|+++++..|++ +.++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45667888876 66799999999999999999988 5899999999999999999999999999999885 56777
Q ss_pred HHHHHHHHHHHHHHH
Q 018089 337 ELAVAKKKIHERREQ 351 (361)
Q Consensus 337 ~l~~~~~~~~~~~~~ 351 (361)
.++.+...+++..++
T Consensus 222 klg~~~~~~g~~~~A 236 (263)
T PRK10803 222 KVGVIMQDKGDTAKA 236 (263)
T ss_pred HHHHHHHHcCCHHHH
Confidence 777777666555444
No 175
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.17 E-value=0.00012 Score=56.21 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=81.6
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh----
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---- 291 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al---- 291 (361)
...|..-+..|-|++|...|++|++...+. ..++.=..+..+.-|+..|+.++..+|+|++++...+++|
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srti------P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTI------PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-------TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccC------ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 445666778899999999999999965543 2222223567788899999999999999999999999999
Q ss_pred ---hcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 292 ---RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 292 ---~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
+++.+. +.+.+++|.++..+|+.++|+..|+.+-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455553 677889999999999999999999988654
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.16 E-value=1.9e-06 Score=51.72 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=31.3
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~ 319 (361)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=1.4e-05 Score=78.63 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
+..+...+|......++|+++..+++..++++|-....||++|.|..++++++.|..+|.++..++|++.++|.++..+.
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34444555555566799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 018089 343 KKIHERREQE 352 (361)
Q Consensus 343 ~~~~~~~~~~ 352 (361)
-++++.+++-
T Consensus 564 i~~~~k~ra~ 573 (777)
T KOG1128|consen 564 IRLKKKKRAF 573 (777)
T ss_pred HHHhhhHHHH
Confidence 8888776653
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.15 E-value=6e-06 Score=52.78 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 340 (361)
.+++.+|.+|..+|++++|++.|+++++.+|+|..++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666777777777777777777777777777666666554
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=2.9e-05 Score=73.65 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=98.2
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHH
Q 018089 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~ 302 (361)
...++|+.|++.+++..+ .+| .+..-+|.+++..++..+|++...++|..+|.++..+.
T Consensus 180 ~~t~~~~~ai~lle~L~~------------------~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~ 238 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRE------------------RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN 238 (395)
T ss_pred hhcccHHHHHHHHHHHHh------------------cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345789999999999776 333 34566899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
-.+..+...++++.|+...+++.++.|++-..|..|+++...+++.+++-
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999988874
No 180
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.11 E-value=2.1e-05 Score=76.57 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=110.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.+.+--.|-.+...|+-++|..+-..+++ .++....||.-+|.++..-++|++||.+|..|+
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34455679999999999999999999999 778888999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.++|+|...|.-++....++++|+.....-.+.+++.|.+...|..++...-.+.++..+
T Consensus 103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888888888777766654
No 181
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.10 E-value=0.00012 Score=59.77 Aligned_cols=114 Identities=17% Similarity=0.067 Sum_probs=85.6
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCC-c---cchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID-E---GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
.+...|......++...++..+.+++.+..--.-..... . .....+......+...++..+...|++++|+..|++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344556667778899999999999999774221111111 1 112356677778888999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
++.++|.+..+|..+-.+|..+|+..+|++.|+++.+.
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987543
No 182
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=4.7e-05 Score=71.27 Aligned_cols=77 Identities=13% Similarity=-0.030 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
--+|..|+...-+++||.++++|--+.|+.+|--.-.+.|+...|+|..|.+.|+...+.-|+|.+.++.|-.+.-.
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 33455555566688999999999999999999999999999999999999999999999999998888777665443
No 183
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.09 E-value=8e-06 Score=48.79 Aligned_cols=34 Identities=47% Similarity=0.793 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
+++|+.+|.+++.+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777765
No 184
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.08 E-value=6e-06 Score=49.47 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
.+|+++|.+|..++++++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 579999999999999999999999999999974
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.07 E-value=2.2e-05 Score=79.66 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=112.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc----------cccCCCCccch--------hhHHHHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC----------WEKEGIDEGKS--------SSLRKTKSQIFTNSSA 272 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~nla~ 272 (361)
.+..+-.+|..|..--+...|..+|.+|.++=..- +.+....++-. ..........|..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 67888889999988888889999999988754211 11111111110 0112233345667899
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.|++.++..+|+.+++.|++.+|.+..+|..+|.+|...|+|..|+..|.+|..++|.+.......+.+++.+.++++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988875
No 186
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.3e-05 Score=72.60 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=73.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..|.-.|-.+|..++|..|+.+-+|+|+ .++....++...|.....+++.++|+-.|..|+
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 44455566666777777777777777776 666666666666666667777777777777777
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
.+.|..-..|-.+-.+|...|.+.+|...-..+++.-|+++..+.+++
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 777666666666666666666666666666666666666666655554
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.03 E-value=0.00023 Score=62.54 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=104.2
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+++.|...+..|+|.+|++.|++....-+ ..|....+.+.++-++++.++|++|+...++-+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p---------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP---------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 56789999999999999999999999887332 455667788999999999999999999999999
Q ss_pred hcCCCch---hHHHHHHHHHHhcC-----C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNV---KALFRQGQAYMALN-----D---VDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 292 ~~~p~~~---ka~~~~g~~~~~~~-----~---~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
++.|.+. -++|-+|.+++..= | -.+|...|+..+.--|+.+ .+...+..+...+...+-.--..|
T Consensus 99 ~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 99 RLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred HhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999774 57888898876542 2 3578888999999999864 566677777777776665544444
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.03 E-value=0.00017 Score=62.68 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=92.0
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-----------CH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------DL 280 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~~ 280 (361)
..+...+|..+++.|+|..|+..|++.++.-| .++....+++.+|.+++++. ..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~ 106 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTST 106 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CCcchhhHHHHHHHHHHHhCccchhcccChHHH
Confidence 45677899999999999999999999999554 34456678888999877653 34
Q ss_pred HHHHHHHHHHhhcCCCch-----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHH
Q 018089 281 KGALLDTEFAMRDGDDNV-----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKKELAV 340 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~-----------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~---~~~~l~~ 340 (361)
.+|+..++..+...|++. .--+..|.-|+..|.|..|+.-++.+++--|+.+. ++..+.+
T Consensus 107 ~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 107 RKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 589999999999999872 22344678889999999999999999999998764 4555555
Q ss_pred HHHHHHHHH
Q 018089 341 AKKKIHERR 349 (361)
Q Consensus 341 ~~~~~~~~~ 349 (361)
+...++...
T Consensus 187 ~y~~l~~~~ 195 (203)
T PF13525_consen 187 AYYKLGLKQ 195 (203)
T ss_dssp HHHHTT-HH
T ss_pred HHHHhCChH
Confidence 555555544
No 189
>PRK11906 transcriptional regulator; Provisional
Probab=98.03 E-value=2.5e-05 Score=74.10 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
...-.+|.+.-++|++ +++.++.++..+|.+....++++.|+..+++|+.++|+++.+||..
T Consensus 317 ~~~~~~a~~~A~rAve------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~ 378 (458)
T PRK11906 317 ELAAQKALELLDYVSD------------------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR 378 (458)
T ss_pred hHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence 3455677777788887 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 305 GQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
|.+....|+.++|.+.++++++++|.-.
T Consensus 379 ~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 379 ALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 9999999999999999999999999654
No 190
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.03 E-value=5.9e-05 Score=72.54 Aligned_cols=120 Identities=18% Similarity=0.115 Sum_probs=95.3
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
+.+......+..+...|+.++|.+..+++++ ..+ +..+..-.+. +..++.++++..+++
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------------------~~~-~~~l~~l~~~--l~~~~~~~al~~~e~ 319 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK------------------RQY-DERLVLLIPR--LKTNNPEQLEKVLRQ 319 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCC-CHHHHHHHhh--ccCCChHHHHHHHHH
Confidence 3455667789999999999999999999987 222 1222222222 245899999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.++.+|+++..++.+|.++...+++++|.+.|++++++.|++.. ...++.+.....+.+++
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999998654 44788888877776655
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.01 E-value=1.1e-05 Score=51.61 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~ 306 (361)
.++..+|.+|..+|++++|+..++++++.+|++..++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468999999999999999999999999999999999999886
No 192
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.00 E-value=5.3e-05 Score=74.52 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
...+++.+|+.|-.+|++++|+.+.++||...|+.++.|+.+|.++...|++++|.++++.|-.+|+.|.-+........
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 35677999999999999999999999999999999999999999999999999999999999999999988777777766
Q ss_pred HHHHHHHHHHH
Q 018089 343 KKIHERREQEK 353 (361)
Q Consensus 343 ~~~~~~~~~~k 353 (361)
-+..+.+++++
T Consensus 273 LRa~~~e~A~~ 283 (517)
T PF12569_consen 273 LRAGRIEEAEK 283 (517)
T ss_pred HHCCCHHHHHH
Confidence 66666665544
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.99 E-value=3.1e-05 Score=70.87 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=71.4
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCC
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGD 295 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~Ai~~~~~al~~~p 295 (361)
.-..+.+.++++.|.+.++.+-+ .++.......-.|.+.+..| .+++|...|++.....+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~------------------~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~ 198 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ------------------IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG 198 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC------------------CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh------------------cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence 44567788999999888877654 11111122222222222333 57888888888777767
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
.++..+..+|.|++.+|+|++|...++++++.+|+++....++..+...+++.
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 77788888888888888888888888888888888887777777666555443
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.97 E-value=6.6e-05 Score=68.69 Aligned_cols=130 Identities=19% Similarity=0.164 Sum_probs=88.8
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
-+.+..+..-|+.|-..++|++|.++|.++....... ........+|.+.+.||.+. ++++|+..++
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~------------~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~ 98 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL------------GDKFEAAKAYEEAANCYKKG-DPDEAIECYE 98 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 3456677777888888999999999999998744321 12334566777777777666 9999999999
Q ss_pred HHhhcCC-----C-chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGD-----D-NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 289 ~al~~~p-----~-~~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~ 351 (361)
+|+.+.- . -.+++.++|.+|... +++++|++.|++|+++-..+ ..+...++.+...++++.++
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 9997531 1 267888899999888 89999999999998873321 13444555555555555554
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.95 E-value=2.7e-05 Score=72.10 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=101.1
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
++...-..+-++||.+|-.|+|+.|+..-+.-|++..+.. .....-.++.|+|.|+.-+|+++.|+++
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 3344455667789999999999999999998888665431 1223456899999999999999999999
Q ss_pred HHHHhhcC----C--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHHH
Q 018089 287 TEFAMRDG----D--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 287 ~~~al~~~----p--~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|..++.+. . -.+...|.+|..|.-+.+++.|+.+..+-+.+..+ ...+...|+.+...+.+.+++.
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 99887553 2 23678899999999999999999999887766532 2345556666666666555543
No 196
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=7.1e-05 Score=77.36 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=97.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.-.+++.+|.+|-+.|++++|...|+++|+ .+|.++.+.+|+|-.|... +.++|++++.+|
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVK------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 335788899999999999999999999999 8899999999999999999 999999999999
Q ss_pred h--------------------hcCCCchhH--------HHHHH------------HHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 291 M--------------------RDGDDNVKA--------LFRQG------------QAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 291 l--------------------~~~p~~~ka--------~~~~g------------~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
+ ..+|++..- .-.++ .+|...++|++++..|+.+++++|.
T Consensus 176 V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 176 IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 8 334544322 22234 7788899999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 018089 331 DGGIKKELAVAKK 343 (361)
Q Consensus 331 ~~~~~~~l~~~~~ 343 (361)
|..++..+..+..
T Consensus 256 n~~a~~~l~~~y~ 268 (906)
T PRK14720 256 NNKAREELIRFYK 268 (906)
T ss_pred chhhHHHHHHHHH
Confidence 9999988888876
No 197
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00022 Score=66.21 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=51.0
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
..+.+.-+|+.+...++.++|+-.|+.|.. +.|....+|..+-.||+..|.+.+|......+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQM------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHh------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 456778899999999999999999999999 77788888888888888877766655544444
Q ss_pred h
Q 018089 291 M 291 (361)
Q Consensus 291 l 291 (361)
+
T Consensus 395 ~ 395 (564)
T KOG1174|consen 395 I 395 (564)
T ss_pred H
Confidence 4
No 198
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.90 E-value=8.5e-05 Score=49.20 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
..+|.+|.+++.+|+|++|..+.+.+++++|+|..+..+...++.++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999998888888777653
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00011 Score=61.82 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 271 SACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 271 a~~~~~l~~~~~Ai~~~~~al~~~p~~-----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
|.-+++.|+|.+|...|+.||.+.|.. +-.|.++|.|+..++.++.|+.++.+|++|+|.+..++...+.+...+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 445678999999999999999999865 457889999999999999999999999999999887777777777776
Q ss_pred HHHHH
Q 018089 346 HERRE 350 (361)
Q Consensus 346 ~~~~~ 350 (361)
...+.
T Consensus 182 ek~ee 186 (271)
T KOG4234|consen 182 EKYEE 186 (271)
T ss_pred hhHHH
Confidence 54444
No 200
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.86 E-value=0.00022 Score=69.81 Aligned_cols=120 Identities=10% Similarity=0.010 Sum_probs=75.6
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+...++...-.++.++|+...+++|+ .-|....+|.-+|+++-++++.+.|...|...++.-
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALK------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHH------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 33344444455556666666666666 455566666777777777777777777777777777
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|.++..|..++.+-...|+.-.|...|+++..-+|.|...|...-.++.+......++
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 7777777767666666666667777777776667766666655555555554444443
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.86 E-value=0.00039 Score=54.62 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
+-.-|.....-|+.+.|++.+.++|.+-|.++.+|.++++++.-+|+.++|++++++|+++....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 34456677789999999999999999999999999999999999999999999999999997543
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.86 E-value=9e-05 Score=67.89 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 018089 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~ 306 (361)
.+++|...|++... ..+..+.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.+++.
T Consensus 182 ~~~~A~y~f~El~~------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 182 KYQDAFYIFEELSD------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp CCCHHHHHHHHHHC------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 58899999998654 223456778999999999999999999999999999999999999999
Q ss_pred HHHhcCCH-HHHHHHHHHHHhhCCCCHHHHHH
Q 018089 307 AYMALNDV-DAAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 307 ~~~~~~~~-~~A~~~~~~a~~l~p~~~~~~~~ 337 (361)
+...+|+. +.+.+++.+....+|+++.+...
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 99999988 66778899888899998866443
No 203
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.85 E-value=6.9e-05 Score=74.73 Aligned_cols=129 Identities=23% Similarity=0.406 Sum_probs=112.7
Q ss_pred CchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CCH
Q 018089 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL 280 (361)
Q Consensus 203 ~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~ 280 (361)
.+....+..+...+..||.+|.+++|..|.-.|..++.+.+. .+.....+..|.+.|++.+ ++|
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~ 109 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY 109 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence 466777888999999999999999999999999999986652 4556778899999998875 699
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
..++..|.-|+...|...+++.+++.+|..++.++-|++++.-....+|.+..+..-+.+++..+
T Consensus 110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 110 PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999977666555555544
No 204
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0002 Score=63.41 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAV 340 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~ 340 (361)
.++.|.-+++.|+|..|...|..-+...|++ +.|+|++|.+++.+|+|++|...|..+.+-.|..+ +....|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6888888999999999999999999999987 68999999999999999999999999999998764 67777777
Q ss_pred HHHHHHHHHHH
Q 018089 341 AKKKIHERREQ 351 (361)
Q Consensus 341 ~~~~~~~~~~~ 351 (361)
+..++++..++
T Consensus 224 ~~~~l~~~d~A 234 (262)
T COG1729 224 SLGRLGNTDEA 234 (262)
T ss_pred HHHHhcCHHHH
Confidence 77777766655
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.81 E-value=4e-05 Score=45.67 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
.+|.++|.+++++|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999975
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.81 E-value=7.3e-05 Score=69.34 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=88.6
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..-.++.++||.+.-.|+|+.|+++|++++.++.+.. -....+..++.+|.+|.-+.++++||.+.++
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999998775441 2234456678999999999999999999999
Q ss_pred HhhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 290 AMRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 290 al~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
-|.+.. -...+++.+|.++..+|..++|+.+.++.+++.
T Consensus 301 HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 301 HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 887643 236899999999999999999999988887763
No 207
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.77 E-value=0.00031 Score=65.39 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=90.5
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
...|...|+++.|..|.-.|..||+++..-.....+-......+.....-+...+..||+++++.+.|+...-+.|.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 45678888999999999999999998864433333333333345666667788999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
.+..-+.+.|.|+..+.+|-+|.+..--|.-
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887665543
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.76 E-value=0.00021 Score=57.47 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
...+++.|...++.|+|.+|++.++.+....|.. ..+.+.++.+|+..++|++|+..+++.++|+|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3457888999999999999999999999988754 689999999999999999999999999999998863
No 209
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.76 E-value=0.00013 Score=74.35 Aligned_cols=114 Identities=11% Similarity=0.003 Sum_probs=100.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...|...|-.+.+.+++..|+..++.|++ .+|.+..+|..+|.+|...|.|..|+..+++|.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 44555689999999999999999999999 899999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
.++|.+.-+.|..+.....+|+|++|+..+...+..-.........++++.-
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~i 675 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVI 675 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999999888765554455555554433
No 210
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00019 Score=65.46 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred hccHHHHhhhHHHHHHHHHHHHH
Q 018089 218 FGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
+|-.+|..|+|++|++.|+-+..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc
Confidence 68889999999999999988766
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.0002 Score=63.98 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKK 336 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~---~~~ 336 (361)
....++..|.-++..|+|++|+..+++++...|... .+.+.+|.+|+.+++|++|+..+++.++++|+++. +..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 445578889999999999999999999999999875 45699999999999999999999999999998763 444
Q ss_pred HHHHH
Q 018089 337 ELAVA 341 (361)
Q Consensus 337 ~l~~~ 341 (361)
.++.+
T Consensus 111 ~~g~~ 115 (243)
T PRK10866 111 MRGLT 115 (243)
T ss_pred HHHHh
Confidence 44444
No 212
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=7.4e-05 Score=64.56 Aligned_cols=81 Identities=14% Similarity=-0.015 Sum_probs=71.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+.+|+.-+.|..|+..|.+||.++|..+..|-+++.||+++++++.+..+.++|++++|+..-....|+......+.+.+
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 45667778899999999999999999999999999999999999999999999999999988888888887766665544
Q ss_pred H
Q 018089 351 Q 351 (361)
Q Consensus 351 ~ 351 (361)
.
T Consensus 97 a 97 (284)
T KOG4642|consen 97 A 97 (284)
T ss_pred H
Confidence 4
No 213
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.71 E-value=0.00021 Score=69.84 Aligned_cols=86 Identities=21% Similarity=0.152 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
..+|+.-+.....+++.++|+..|+++|+..|+..|.|.-+|+++..+++.+.|.+.|..-++..|+....|..|..+.+
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 35677777788889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHH
Q 018089 344 KIHERR 349 (361)
Q Consensus 344 ~~~~~~ 349 (361)
+.....
T Consensus 731 k~~~~~ 736 (913)
T KOG0495|consen 731 KDGQLV 736 (913)
T ss_pred Hhcchh
Confidence 775433
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.64 E-value=9e-05 Score=44.16 Aligned_cols=32 Identities=44% Similarity=0.760 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
++|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56777777777777777777777777777774
No 215
>PRK10941 hypothetical protein; Provisional
Probab=97.63 E-value=0.00064 Score=61.31 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
.......|+=.+|++.++++.|+.+++..+.++|+++.-+--+|.+|.+++.+..|..+|+..++..|+++.+......+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999998765544444
Q ss_pred H
Q 018089 342 K 342 (361)
Q Consensus 342 ~ 342 (361)
.
T Consensus 259 ~ 259 (269)
T PRK10941 259 H 259 (269)
T ss_pred H
Confidence 3
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0016 Score=57.37 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=95.7
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
.-...+|......|+-+.|..++++.-+..... .--........|.+.+|+-.++|..|...++++++
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------hccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 335567888888999999998888554311000 01123456678999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAKKKI 345 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~~~~~~ 345 (361)
.||.++.+..+.|.|++.+|+..+|++.++.++...|. +..+..+|..+.+..
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~ 336 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELE 336 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 445666666655443
No 217
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00076 Score=61.64 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=68.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka 300 (361)
.+..+++|..|+...+-.+. .+++++ ..+-.-+|.|++++|+|++|+..|..+...+..+.+.
T Consensus 31 dfls~rDytGAislLefk~~----------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el 93 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLN----------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL 93 (557)
T ss_pred HHHhcccchhHHHHHHHhhc----------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence 35567889888888776654 111111 2233456899999999999999999999988888999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 301 LFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
+.++|.|++.+|.|.+|.....+|
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999876554
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.49 E-value=5.6e-05 Score=45.27 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 018089 234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 234 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~ 285 (361)
+|++||+ ++|.++.+|+|+|.+|..+|++++|++
T Consensus 1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999 999999999999999999999999963
No 219
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.46 E-value=0.00039 Score=59.38 Aligned_cols=81 Identities=20% Similarity=0.154 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
+...+.+++-+|..|-.+|-+.-|..++.++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999877665554
Q ss_pred H
Q 018089 340 V 340 (361)
Q Consensus 340 ~ 340 (361)
.
T Consensus 141 i 141 (297)
T COG4785 141 I 141 (297)
T ss_pred e
Confidence 3
No 220
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.45 E-value=0.0015 Score=64.40 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=89.8
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+.-++..+-..|+|++|+++.++||. ..|..+.+|...|.++-++|++.+|.+..+.|-.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIE------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4567778888899999999999999999 7888899999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
+|+.+--.....+..++..|+.++|...+....+-+
T Consensus 257 LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 257 LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999988888888999999999999999998776655
No 221
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.41 E-value=0.0046 Score=57.40 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=107.6
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~ 287 (361)
+...+......|..-+-.|+|..|.....++-+ -.+.-..+|..-|.+.-++|+++.|-.+.
T Consensus 80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae------------------~~e~p~l~~l~aA~AA~qrgd~~~an~yL 141 (400)
T COG3071 80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE------------------HGEQPVLAYLLAAEAAQQRGDEDRANRYL 141 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh------------------cCcchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344677778888888899999999999998766 44555667788888889999999999999
Q ss_pred HHHhhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 288 EFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 288 ~~al~~~p-~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.+|-+..+ +...+...++......|+++.|...+.++++..|.++.+......+...++++.+-
T Consensus 142 ~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 142 AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence 99999954 45678888999999999999999999999999999999999999888888776653
No 222
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.40 E-value=0.0048 Score=48.81 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhh-cCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089 262 TKSQIFTNSSACKLKLG---DLKGALLDTEFAMR-DGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~---~~~~Ai~~~~~al~-~~p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 336 (361)
......+|+|.+..+.. +.++.|..++..++ -+|+ .-..+|.+|..++.+++|+.|+.+++..++.+|+|..+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34566789999988865 56778889999996 5554 3678899999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 018089 337 ELAVAKKKIH 346 (361)
Q Consensus 337 ~l~~~~~~~~ 346 (361)
+-..++.++.
T Consensus 110 Lk~~ied~it 119 (149)
T KOG3364|consen 110 LKETIEDKIT 119 (149)
T ss_pred HHHHHHHHHh
Confidence 8777777665
No 223
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.0033 Score=63.78 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=96.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka 300 (361)
.....++|..|+....+.++ ..|....+...-|....++|++++|....+..-...+++...
T Consensus 18 d~ld~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t 79 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT 79 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH
Confidence 34578999999999999999 888888888999999999999999996555555667788888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
+--+-.+|..++++++|...|+++...+|+ .+....+=.+.-+.+.+++.++..
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 666666666666666666655443
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0099 Score=51.56 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=91.1
Q ss_pred hHHHHHhccHHHHh-hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
|..+.++|..|-.. .+++.|+.+|++|-++...- ......-.|++..|.....+++|.+||..|+++
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e------------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE------------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666555 78999999999998865310 123344467788888888999999999999999
Q ss_pred hhcCCCc------hhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDN------VKAL-FRQGQAYMALNDVDAAVESFEKALKLEPNDG--GIKKELAVAKKKIHERRE 350 (361)
Q Consensus 291 l~~~p~~------~ka~-~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~--~~~~~l~~~~~~~~~~~~ 350 (361)
.+..-++ .|-| +.-|.|++...+.-.|...+++..+++|.-. .-.+.|..+...+.+...
T Consensus 181 a~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~ 249 (288)
T KOG1586|consen 181 ARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDI 249 (288)
T ss_pred HHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhH
Confidence 9765544 4444 4567888888999999999999999999743 334455555555554433
No 225
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0019 Score=63.25 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=87.9
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+++.+..+|+.++|..+++.|...+++++.- ..+........+++.||+++.+.++|++++++|=+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D------------~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD------------NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999976532 24556688899999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
.+|.++-.-+..-++...-+.-++|+....+....
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999888777888888888889998887766543
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.34 E-value=0.00076 Score=61.80 Aligned_cols=103 Identities=24% Similarity=0.245 Sum_probs=82.5
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.+..+|+.+...+.|+.+++.|++|++++....+ .-....++..++..+..++++++|+-+..+|+++
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D------------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD------------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC------------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 3455899999999999999999999997754311 1123456888999999999999999999999876
Q ss_pred CCC------c----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 294 GDD------N----VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 294 ~p~------~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
-.. + .-++|+++.++..+|+.-+|.++.+++.++.
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 432 1 3578889999999999999999999998774
No 227
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.0071 Score=51.05 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=82.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+......+..++..+++++|+...+.++.... .......+-.++|.+.+.+|.+++|+..++..-
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK---------------DENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch---------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 44557788999999999999999999996321 344666778999999999999999988776544
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
.-+ -.+..--.+|.++...|+-++|...|+++++.+++.
T Consensus 154 ~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 154 EES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 322 123345678999999999999999999999998544
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.30 E-value=0.00035 Score=41.53 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
.+|..+|.+|.++|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999854
No 229
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0026 Score=61.74 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=74.7
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG- 294 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~- 294 (361)
++.+-++|+.+..++|+..++- +++.+..+...+|++++++++|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~---------------------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG---------------------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc---------------------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 5788888999999999999882 334455677889999999999999999999986222
Q ss_pred -----------------------------CC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 295 -----------------------------DD-NVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 295 -----------------------------p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
|+ +...+|+.|.++...|+|.+|++.+++|+++
T Consensus 142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22 4578999999999999999999999999443
No 230
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.23 E-value=0.0066 Score=52.96 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=75.8
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHH
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-------KGALLDTEFA 290 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~Ai~~~~~a 290 (361)
.+..+-....+++|++.|.-||-...... ......+.+++.+|.+|..+++. ..|+..|.+|
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~-----------~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a 151 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIKK-----------EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA 151 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 34466678899999999999987432210 02225678899999999999984 4566666666
Q ss_pred hhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 291 MRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 291 l~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
+.... +.....|-+|.++..+|++++|+.+|.+++..--
T Consensus 152 ~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 152 YENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 65432 2368999999999999999999999999987543
No 231
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00046 Score=64.49 Aligned_cols=146 Identities=24% Similarity=0.298 Sum_probs=111.1
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCC----ccCC-CCCC
Q 018089 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGE----SIYG-LKFE 92 (361)
Q Consensus 18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~----~~~~-~~~~ 92 (361)
-.|.|+++.+-.|.-++-|...|.-. |+++..|.||+..+++|.||..-....+|. +..+ .+|+
T Consensus 112 s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 112 SLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 39999999999999999999998765 899999999999999999986543333332 1111 1233
Q ss_pred CC--CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcccceEeccc
Q 018089 93 DE--NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170 (361)
Q Consensus 93 ~e--~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~ 170 (361)
.. ++.++|.. -+......-..-.+-+|+++....+.+..+-.|+|.+..+.++++.|....++....|..++.+...
T Consensus 181 r~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 181 RTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred cccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 32 45666644 4444444333344677888888888888899999999999999999999999998899998888887
Q ss_pred cccCC
Q 018089 171 GEIPE 175 (361)
Q Consensus 171 ~~~~~ 175 (361)
...+.
T Consensus 260 elgRR 264 (558)
T KOG0882|consen 260 ELGRR 264 (558)
T ss_pred ehhhh
Confidence 66544
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.01 Score=53.36 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=93.8
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF---- 289 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~---- 289 (361)
.-...+..+...+++.+|...+..++. ..+....+...+|.||+..|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~------------------~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQ------------------AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHH------------------hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 345678888999999999999999998 6667778889999999999998665543332
Q ss_pred ------------------------------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHHHHH
Q 018089 290 ------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGIKKE 337 (361)
Q Consensus 290 ------------------------------al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~~ 337 (361)
.+..+|++..+-+.+|..+...|++++|.+.+-..++.+- +|..+++.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 2256899999999999999999999999999988888765 36678888
Q ss_pred HHHHHHHHH
Q 018089 338 LAVAKKKIH 346 (361)
Q Consensus 338 l~~~~~~~~ 346 (361)
|-++-..+.
T Consensus 278 lle~f~~~g 286 (304)
T COG3118 278 LLELFEAFG 286 (304)
T ss_pred HHHHHHhcC
Confidence 888777766
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.20 E-value=0.0096 Score=50.36 Aligned_cols=115 Identities=27% Similarity=0.239 Sum_probs=63.6
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA-CKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~~l~~~~~Ai~~~~~al 291 (361)
..+...|......+++..|++.+.+++... +.........+. ++..+++++.|+..+.+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALD------------------PDPDLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------------------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555666666666665411 111112222222 6666677777777777766
Q ss_pred hcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 018089 292 RDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVAKKKI 345 (361)
Q Consensus 292 ~~~p---~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~~~~~~ 345 (361)
..+| .....++.++..+...++++.|+..+.++++..+. .......+.......
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 6555 34555555555566666777777777777766666 345555554444433
No 234
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.17 E-value=0.0014 Score=43.33 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~ 306 (361)
.+++.+|..+.++|+|.+|..+++.+|+++|+|..|..-...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 467899999999999999999999999999999887655443
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.0041 Score=60.98 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=85.2
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
+.+--+...|..+..+|+.++|++.|++++..- ....+....++..++.|++-+.+|++|..++.+
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQ--------------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 345567778999999999999999999998611 124556678899999999999999999999999
Q ss_pred HhhcCCCchhHHHH--HHHHHHhcCCH-------HHHHHHHHHHHhhCC
Q 018089 290 AMRDGDDNVKALFR--QGQAYMALNDV-------DAAVESFEKALKLEP 329 (361)
Q Consensus 290 al~~~p~~~ka~~~--~g~~~~~~~~~-------~~A~~~~~~a~~l~p 329 (361)
.+..+. +++++|. .|.|+.++++. ++|.+.|+++..+-.
T Consensus 331 L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 331 LLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999774 4555544 68889999999 888888888876643
No 236
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.12 E-value=0.0026 Score=57.13 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 340 (361)
.+-.+.|.-..+.|+.++|...+..|+.++|+++.++.++|+.....++.-+|-.+|-+|+.++|.|.+++.+...
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3345556666789999999999999999999999999999999999999999999999999999999988777655
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.10 E-value=0.00093 Score=39.21 Aligned_cols=31 Identities=39% Similarity=0.702 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
|++++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5677777777777777777777777777665
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.06 E-value=0.014 Score=49.37 Aligned_cols=108 Identities=30% Similarity=0.357 Sum_probs=85.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-chh
Q 018089 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVK 299 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~-~~k 299 (361)
.++..++++.|+..|.+++...+. .......+..++..+...++++.|+..+.+++...+. ...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 203 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH
Confidence 788999999999999999771110 0134455566666688889999999999999999998 799
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
++..++.++...+++++|+..+.+++...|........+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 99999999999999999999999999999874444444444333
No 239
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.02 E-value=0.002 Score=62.49 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=92.6
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ 298 (361)
|...-..|+-..|+.+...|+...+ . .......|+|.+.++-+-...|-..+.++|.+.-..+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p---------------~--~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep 676 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAP---------------L--QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP 676 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccCh---------------h--hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence 4444457888889999999998332 1 2234578999999999999999999999999997788
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
-.+|.+|.+|..+.+.+.|++.|+.|++++|+++.+...|..+..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 899999999999999999999999999999999999988888776
No 240
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.99 E-value=0.00099 Score=63.29 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 269 nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
+-|.-.++-+.|+.|+..|.+||+++|+++..+-+++.++...++|..|+.++.+|++++|...-++...+.+.-.+.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44556678899999999999999999999999999999999999999999999999999998665544444444444444
Q ss_pred HH
Q 018089 349 RE 350 (361)
Q Consensus 349 ~~ 350 (361)
++
T Consensus 89 ~~ 90 (476)
T KOG0376|consen 89 KK 90 (476)
T ss_pred HH
Confidence 43
No 241
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.95 E-value=0.0055 Score=63.41 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
...|..+...+...|+++.|...+++++.+.|++...|..+..+|...|++++|.+.+++..+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3457888888888999999999999999999998889999999999999999999998887654
No 242
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.95 E-value=0.00031 Score=63.85 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+..|.++.||+.|..||.++|.....|-.++.++..++....|+++|..|++++|+...-+...+.++..+..+.++.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 457889999999999999999999999999999999999999999999999999998777777777777777665543
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.94 E-value=0.0037 Score=57.44 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=89.3
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
......+.|.|++++.+--..|..+... ........++.|++..+.++.++.+++.++...+.+....
T Consensus 49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~------------~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~ 116 (518)
T KOG1941|consen 49 LVTAHSEMGRYKEMLKFAVSQIDTAREL------------EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTR 116 (518)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Confidence 3444455566665555443333322211 1334566889999999999999999999999999876444
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHH
Q 018089 298 -----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 298 -----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~~~~~ 351 (361)
..++..+|.++..++.++++++.|++|++..-++. .+...|+++...+++.+++
T Consensus 117 ~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Ka 181 (518)
T KOG1941|consen 117 AGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKA 181 (518)
T ss_pred cccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHH
Confidence 36778899999999999999999999999865433 4677788888888877665
No 244
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.016 Score=52.13 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=79.4
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF---- 289 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~---- 289 (361)
.+..+|-.++...+|..|..+|++.-. +.|........-|+..++.+.+..|+.....
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~q------------------l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQ------------------LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN 107 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 456689999999999999999999876 3444444444445544555554444432221
Q ss_pred ------------Hh--------------hcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 290 ------------AM--------------RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 290 ------------al--------------~~~p--~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
|| +.-| ..+....+.|.+.++.|+|++|++-|+.|++...-++.+..+++.+
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa 187 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA 187 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence 22 1112 3456667777777777888888888888888777777777777777
Q ss_pred HHHHHHHHHHH
Q 018089 342 KKKIHERREQE 352 (361)
Q Consensus 342 ~~~~~~~~~~~ 352 (361)
.-..+++..+-
T Consensus 188 Hy~~~qyasAL 198 (459)
T KOG4340|consen 188 HYSSRQYASAL 198 (459)
T ss_pred HHhhhhHHHHH
Confidence 76666655543
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.93 E-value=0.0072 Score=53.31 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
-+.-+++-|...++-|+|.+|+..++.+....|.+ .++..-++.+++..++|++|+...++.+++.|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 34568889999999999999999999999988754 689999999999999999999999999999998764
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.93 E-value=0.00067 Score=41.10 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 301 LFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
|.++|.+|..+|+|++|+..|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.92 E-value=0.0017 Score=37.02 Aligned_cols=31 Identities=55% Similarity=0.927 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
+++++|.++..++++++|+..|+++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666655553
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.89 E-value=0.0019 Score=39.11 Aligned_cols=29 Identities=21% Similarity=0.105 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+|.++|.+|.++|+|++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999977554
No 249
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.024 Score=50.21 Aligned_cols=77 Identities=18% Similarity=0.112 Sum_probs=59.6
Q ss_pred HHHHHHhc----CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 270 SSACKLKL----GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 270 la~~~~~l----~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
||..+.++ +++..|.-.|++.-..-|..+..+...+.|++.+++|++|...++.++.-++++++.+.++--+...+
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHL 254 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 44444443 45788888888888867778888888888888888888888888888888888888888777665554
Q ss_pred H
Q 018089 346 H 346 (361)
Q Consensus 346 ~ 346 (361)
+
T Consensus 255 G 255 (299)
T KOG3081|consen 255 G 255 (299)
T ss_pred C
Confidence 4
No 250
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.0023 Score=60.86 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------cCC---------CchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR---------DGD---------DNVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~---------~~p---------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
....|+|+|.++++++.|.-++.++.+||+ +.| .+...+|+.|..|...|+.-.|-++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 455679999999999999999999999995 112 23678999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH
Q 018089 325 LKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 325 ~~l~p~~~~~~~~l~~~~~~ 344 (361)
.+.--.|+.+|..|+++--.
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99998999999999987543
No 251
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.011 Score=53.12 Aligned_cols=85 Identities=12% Similarity=-0.043 Sum_probs=75.9
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHH
Q 018089 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~ 301 (361)
+.+..+|..|+++...-.+ .+|.....+..+|.||+...+|..|..+|++...+.|...+..
T Consensus 20 lI~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred HHHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 4678899999999888777 6777778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 018089 302 FRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
+..|+.++..+.+.+|++.....
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLL 104 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHh
Confidence 99999999999999999876543
No 252
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.81 E-value=0.0088 Score=49.90 Aligned_cols=69 Identities=25% Similarity=0.261 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALND----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~----------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
|+.|.+.++.....+|.++.++++=|.++..+.+ +++|+.-|++|+.++|+...+...++.+.-.+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999988754 46889999999999999999999999887776653
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.78 E-value=0.022 Score=48.20 Aligned_cols=101 Identities=21% Similarity=0.176 Sum_probs=79.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.-..+..+|+.+.+.|+++.|++.|.++..+.. .......++.++-.+.+..++|..+..+..+|
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---------------~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCT---------------SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346678899999999999999999999988553 34467788899999999999999999999888
Q ss_pred hhcCCC--c----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 291 MRDGDD--N----VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 291 l~~~p~--~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
-.+-.. + .+.....|..++..++|..|...|-.+..
T Consensus 100 ~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 100 ESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 865322 2 22334457778888999999988866543
No 254
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.77 E-value=0.002 Score=37.70 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
+++++|.|+.++|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999999999974
No 255
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.72 E-value=0.016 Score=53.00 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=90.5
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhc
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMRD 293 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al~~ 293 (361)
|....+.+-+.+..+.|-..|.+|+. .......+|...|...++ .++.+.|...++.+++.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~ 65 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARK------------------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHc------------------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34455666777789999999999976 333455678888888666 56777799999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERR 349 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~~ 349 (361)
-|.+...|.....-+..+++.+.|...|++++..-|.+. .+|....+-+...++..
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999877655 57777777666665443
No 256
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.05 Score=51.98 Aligned_cols=124 Identities=11% Similarity=0.093 Sum_probs=102.3
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+...|.---.++++..|-+.|++||. .+..+..+|...+.+-++.+....|....++|+.+=
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 33445555578889999999999998 777889999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~ 358 (361)
|.--+.||..-..-..+|+...|.+.|++=++..|+ ..+|...-.-+.+.++.+.+ +.-|.+
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeiera-R~IYer 199 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERA-RSIYER 199 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence 999999999999999999999999999999999995 44666666665555555443 333443
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.69 E-value=0.018 Score=55.23 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
..+|.|..++|+.++|++.+...++..|. +...++++..++..++.|.++.+.+.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 44555555555555555555555544432 3345555555555555555555555554
No 258
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.017 Score=52.62 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=75.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+--+.+.+-..+--|+|..|++--.+|+. ++|....+++.-|.|++.++.+.+|+.+|+..+
T Consensus 119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~------------------~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 119 AVLYTNRAAAQLYLGNYRSALNDCSAALK------------------LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHh------------------cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 44566777777888999999999999999 999999999999999999999999999999997
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
.++.. |....+-+-.++|+++..+...+.++++..+.+
T Consensus 181 ~~d~e--------------------~K~~~~l~~l~~k~~~~~L~~er~~rK~~~e~k 218 (390)
T KOG0551|consen 181 QIDDE--------------------AKKAIELRNLIHKNDKLKLIEERDVRKKNAEEK 218 (390)
T ss_pred hhhHH--------------------HHHHHHHHhhcCcchHHHHHHHHHHHHHhHHHH
Confidence 66632 222222222356777766666666655544433
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.033 Score=50.95 Aligned_cols=127 Identities=13% Similarity=0.002 Sum_probs=91.9
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
+.....+..++.+|++.+|...+.+.|. ..|.+..++...-.+++.+|+...-....++++-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~------------------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLD------------------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHH------------------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 4455567778889999999999999998 6666666666666677778888888888888886
Q ss_pred c-CCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089 293 D-GDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 293 ~-~p~~~k---a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
. +|+-+- ..--.+-++.+.|-|++|.+.-++++++||.|.-+.-.++-+.+...+.++..+.+|+
T Consensus 166 ~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 166 KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6 554432 2223455677788888888888888888888876666666666666666666666554
No 260
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.64 E-value=0.035 Score=59.21 Aligned_cols=102 Identities=18% Similarity=0.076 Sum_probs=70.3
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
....|..+...|++++|...+.+++....... .......++.++|.+++.+|++++|...+++++.+.
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHD------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34456666667777777777777776432110 011223466888999999999999999999988752
Q ss_pred CC--------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 295 DD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 295 p~--------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
.. ..-.+..+|.++...|++++|...+.+++.+.
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 21 12345567888888999999999999888764
No 261
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.63 E-value=0.072 Score=43.26 Aligned_cols=84 Identities=24% Similarity=0.241 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----------------------hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~----------------------~ka~~~~g~~~~~~~~~~~A~~~~~~a~ 325 (361)
...|......++...++..+.+++.+.... ..++.+++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334555566788889999999999664211 4577778888999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 326 KLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 326 ~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.++|.+..++..+-.+....++...+
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A 115 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEA 115 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999988888876665
No 262
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.63 E-value=0.0029 Score=35.93 Aligned_cols=33 Identities=33% Similarity=0.301 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
.++.++|.++..++++++|+.++++++.++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998853
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.61 E-value=0.026 Score=54.22 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
.-+..|+|.|..++|+.++|++.++..++..|. +..++.+|-++...++.+.+.++-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 566788999999999999999999999998886 567888888888887777666543
No 264
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.61 E-value=0.034 Score=59.83 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=45.9
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-- 292 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~-- 292 (361)
+..+...|.+.|++++|++.|.+..+.- ..| +...|+.+-.+|.+.|++++|.+.+++...
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~G----------------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKN----------------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcC----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 3344455666666666666666554300 111 123344444455555555555555554443
Q ss_pred --cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 293 --DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 293 --~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
+.| +...|..+..+|...|++++|.+.|+++.+.+
T Consensus 573 ~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 573 HPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred CCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 122 23344444444555555555555555554443
No 265
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.037 Score=52.78 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=89.0
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHH
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~ 303 (361)
...+.+.+.+.|+.+|.++|+. .=..+.+|+..|...+++.+...|...+..||-..|.+ |.+-.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHk--------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~ 442 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHK--------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKG 442 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcc--------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHH
Confidence 4678889999999999988754 33566788888888888888899988888888888743 33333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.-..-..+++++.....|++.++..|+|-.+|...++++..+.+..++
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 334455778888888889999998898888888888888888877664
No 266
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.02 Score=55.79 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=82.7
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc---------cCCCCccchhh---HHH---HHHHHHHHHHHHHHhc
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDEGKSSS---LRK---TKSQIFTNSSACKLKL 277 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~---------~~~~~~~~~~~---~~~---~~~~~~~nla~~~~~l 277 (361)
+.++..-|.+-+.++|++|+..-.+.+...+.-.. .+..-.++... .++ ......+-.|-|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 44555566666777777777777776664321000 00000000000 111 1111225788899999
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHH
Q 018089 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKIH 346 (361)
Q Consensus 278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~ 346 (361)
+..++|+..++ -+++...+.+.-+|++++.+++|++|.+.|+...+-+..+ .....++..+...+.
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 99999999988 6777778899999999999999999999999988766543 344555544444333
No 267
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.044 Score=48.51 Aligned_cols=122 Identities=13% Similarity=0.244 Sum_probs=95.0
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh--
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-- 291 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al-- 291 (361)
-.+...+.+.-.|.|.-.+..|.+.++. ..+..+.+...++.+.++.|+.+.|..+++.+-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----------------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~ 241 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-----------------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV 241 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3456788888899999999999999881 236677888999999999999999999999443
Q ss_pred --hcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 292 --RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 292 --~~~p--~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.++. .+.-...+.+.+|...++|.+|...|.++++.||.++.+..+-+.|.-=+++...+-
T Consensus 242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 3332 345677788888999999999999999999999998876666555555444444443
No 268
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.56 E-value=0.014 Score=43.35 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKIHERR 349 (361)
Q Consensus 283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~~ 349 (361)
.+..++++++.+|++..+.+.+|.++...|++++|++.+-.+++.++.. ..+++.+-.+-..+....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4667889999999999999999999999999999999999999998864 678888888877777543
No 269
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.55 E-value=0.044 Score=58.43 Aligned_cols=100 Identities=20% Similarity=0.112 Sum_probs=79.0
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
...|..++..|+++.|...++++++..+.. .......+..++|.++..+|++++|...+.+++....
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~ 522 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLT-------------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR 522 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 345777888999999999999998732210 1222345678899999999999999999999997643
Q ss_pred Cc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 296 DN------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 296 ~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
.. ..++..+|.++...|++++|...+++++.+.
T Consensus 523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 21 3567788999999999999999999998863
No 270
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.049 Score=52.30 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~ 307 (361)
-..-...|+.|+. .-+.++.+|.+-..-+.+.+.+.+--..|.++|..+|+++..|..-|.=
T Consensus 87 ~~rIv~lyr~at~------------------rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w 148 (568)
T KOG2396|consen 87 PNRIVFLYRRATN------------------RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW 148 (568)
T ss_pred HHHHHHHHHHHHH------------------hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence 3445677888877 4455788888888887788889999999999999999999999999888
Q ss_pred HHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 308 YMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 308 ~~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
.+..+. .+.|.+.|.++++.+|+.+.+|...-.++..-.
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 777775 999999999999999999998887666554433
No 271
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.55 E-value=0.039 Score=59.40 Aligned_cols=29 Identities=3% Similarity=-0.150 Sum_probs=17.2
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
...+..+-+.+.+.|++++|.+.|.+...
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566666666666666666665543
No 272
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.51 E-value=0.0043 Score=53.54 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=56.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
...+.++.+.|.+.|.+|+++.|.+...|+|+|......|+++.|.+.|++.++++|.+-.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456789999999999999999999999999999999999999999999999999998643
No 273
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.45 E-value=0.014 Score=60.42 Aligned_cols=112 Identities=15% Similarity=-0.054 Sum_probs=59.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhh--hh----------ccccCCCCccch--hhH----HHHHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYL--DI----------CWEKEGIDEGKS--SSL----RKTKSQIFTNSSAC 273 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~--~~----------~~~~~~~~~~~~--~~~----~~~~~~~~~nla~~ 273 (361)
...+..+...+.+.|++++|++.|++..+.- +. +........... ... -+.+..+++.+...
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 3456677788888888888888888765410 00 000000000000 000 01122344555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 274 ~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
|.+.|++++|...+++..+ .+...|..+..+|...|+.++|++.|++..+
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665543 2445666666667777777777777766654
No 274
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.049 Score=48.60 Aligned_cols=82 Identities=20% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.......+..|+=..++..++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..++..|+++.+...-
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 34455667788888899999999999999999999999999999999999999999999999999999999987654443
Q ss_pred HH
Q 018089 339 AV 340 (361)
Q Consensus 339 ~~ 340 (361)
..
T Consensus 256 ~~ 257 (269)
T COG2912 256 AQ 257 (269)
T ss_pred HH
Confidence 33
No 275
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.42 E-value=0.059 Score=50.24 Aligned_cols=113 Identities=21% Similarity=0.182 Sum_probs=78.0
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
...+..+...|++++|.+....+++-- .++. ++.- .-..+.+++..=++..++.+...|
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~----------------~D~~---L~~~--~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQ----------------WDPR---LCRL--IPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhc----------------cChh---HHHH--HhhcCCCCchHHHHHHHHHHHhCC
Confidence 345666778899999999999998711 1121 1111 223466788888888888888888
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+++..++.+|..++..+.|.+|..+|+.|++.-|+ ...+..++.+...+.+-.+
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEE 379 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHH
Confidence 88888888888888888888888888888887764 3455556666555554433
No 276
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.025 Score=49.47 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHh------------------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAM------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al------------------~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
...++...|.-++++|+|.+|...|..|| +++......+.+.++|+...++|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 34567778888899999999999999998 223334668999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH
Q 018089 325 LKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 325 ~~l~p~~~~~~~~l~~~~~~ 344 (361)
++.+|.|..++...+++...
T Consensus 257 L~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred HhcCCchHHHHHHHHHHHHh
Confidence 99999998777766665543
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.046 Score=47.88 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=86.7
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD-- 293 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~-- 293 (361)
...+-.+.+..+.+.|+..|++++.++..- .....-...+...+.++.+++.|.+|-..+.+-...
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~------------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEED------------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhcc------------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 344555566778888899999988876422 134455677888888999999999998777665432
Q ss_pred ----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018089 294 ----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 294 ----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
-++..+++...-.+|+..++|..|...++....+..-+. ...-+.++..+.-+.+.+-..++++
T Consensus 182 ~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 182 KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAYDEGDIEEIKKV 249 (308)
T ss_pred HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHhccCCHHHHHHH
Confidence 244567777777788888899999999999877654321 1222334444555555544444444
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.26 E-value=0.45 Score=43.34 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=88.3
Q ss_pred CchhHHHHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHH
Q 018089 203 NELSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (361)
Q Consensus 203 ~~~~~~~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (361)
.++......+..+++.|..+++++ +|+.|+...++|++++... ................++..++.+|+..+.++
T Consensus 26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~----~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP----GKMDKLSPDGSELRLSILRLLANAYLEWDTYE 101 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh----hhccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 355666778999999999999999 9999999999999987542 11122223366778889999999999988765
Q ss_pred HHHHHHHHHh----hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 282 GALLDTEFAM----RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 282 ~Ai~~~~~al----~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
.... |.+++ .-.|+.+..++-.=.+....++.+++.+.+.+++.--+
T Consensus 102 ~~~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 102 SVEK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 4333 44444 34566666664444445557889999998888887654
No 279
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.23 E-value=0.13 Score=43.41 Aligned_cols=112 Identities=18% Similarity=0.092 Sum_probs=82.2
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCc
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-DGDDN 297 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~-~~p~~ 297 (361)
+..+..+=+.+.++..-.+.++.. |. ..-.+.+|....++|++.+|...|++++. +-.++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~A------------------pT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d 123 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIA------------------PT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD 123 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhc------------------hh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC
Confidence 344444445555555555555522 22 23367889999999999999999999997 56788
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~~ 349 (361)
...+..++++.+..+++..|...+++..+.+|. .+.-...++......+...
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 999999999999999999999999999999985 3444555555544444333
No 280
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.20 E-value=0.026 Score=43.23 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=68.8
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHhhc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l~~~~~Ai~~~~~al~~ 293 (361)
.+..++.+|++-+|++..+..+..-. .....+ -+......++..+|..- .+.--.-.+++.+.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~-------~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG-------EDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc-------CCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence 46678999999999999999987211 000000 12333333444443321 1111245688999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
.|..+..+|.+|.=+-....|+++..-.++++.+.
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999998887777778888888888887653
No 281
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.05 E-value=0.03 Score=53.68 Aligned_cols=103 Identities=24% Similarity=0.397 Sum_probs=68.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE 97 (361)
Q Consensus 18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~ 97 (361)
-.+.+||.+. +|.++++|+.+.+.+ .+ +|-. ...+-.+..+.-|...+.||..
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~~G-----------~~------~Vd~---------~tsTfi~d~~L~g~~~p~En~~ 253 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALMEDG-----------TF------RVDY---------RTSTFISDDSLRGLDKPEENIE 253 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHhCC-----------eE------EEee---------eecceEecccccCccCCccccC
Confidence 4677888777 899999999998865 11 1110 0011111223346666677664
Q ss_pred CCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089 98 LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~ 152 (361)
..++|+|.+.+.|.. ....||...+.|. .-.|+|+|+|+.|+|+++-...
T Consensus 254 --~R~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 254 --KRRRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred --cccceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence 346899999998854 5568887766552 2359999999999999986544
No 282
>PLN03077 Protein ECB2; Provisional
Probab=95.98 E-value=0.064 Score=56.99 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=81.2
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHh--hh----------hccccCCCCccc--hhhHH-----HHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRY--LD----------ICWEKEGIDEGK--SSSLR-----KTKSQIFTNSSA 272 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~--~~----------~~~~~~~~~~~~--~~~~~-----~~~~~~~~nla~ 272 (361)
...|..+...+.+.|+.++|++.|++..+. .| .+.......+.. ...+. .-+...|..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 455788888888999999999999887651 00 000000000000 00000 012245666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
++.+.|++++|.+.+++. .+.|+ ...|..+-.++...++.+.|....+++++++|++...+..|..+....++.++.
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 677777777777666654 24443 445555555666667777777777777788888877777777776665555443
No 283
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.067 Score=47.45 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH-HHHHHHHhhCCCCHHH
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV-ESFEKALKLEPNDGGI 334 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~-~~~~~a~~l~p~~~~~ 334 (361)
+..+.+.+..|.|++.+++|++|....+.||..++.++..+.++-.+-..+|.-.++. +.+.+....+|.++-+
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 3455678899999999999999999999999999999999999999999999877666 4666667778877654
No 284
>PRK00969 hypothetical protein; Provisional
Probab=95.92 E-value=0.034 Score=53.49 Aligned_cols=103 Identities=26% Similarity=0.412 Sum_probs=69.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE 97 (361)
Q Consensus 18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~ 97 (361)
-.+.+||..+ +|.++++|+.+.+.+ .| +|-. ...+-.+..+.-|...+.||+.
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~G-----------~f------~Vd~---------~tstfI~d~~L~g~~~p~En~~ 256 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLEDG-----------TF------EVDF---------ETSTFIADDRLQGLKIPEENFE 256 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhCC-----------eE------EEee---------eecceEeeccccCccCCccccC
Confidence 4677888777 899999999999865 11 1110 0011111223346666777764
Q ss_pred CCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089 98 LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~ 152 (361)
..++|+|.+.+.|.+ ....||...+.|. .-.|+|+|+|..|+|+++-...
T Consensus 257 --~R~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 257 --PRRRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred --ccccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence 346899999998854 5568888776552 2359999999999999885544
No 285
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.86 E-value=0.12 Score=55.47 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
.....|...|...+++++-+.|.....+||..-|. ..+.....|+.-+..|+-+.+...|+-.+.-.|.-.+.|..+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 45667777777777777777788888888877776 5677777777777888888888888877777777777777666
Q ss_pred HHHHH
Q 018089 340 VAKKK 344 (361)
Q Consensus 340 ~~~~~ 344 (361)
....+
T Consensus 1642 d~eik 1646 (1710)
T KOG1070|consen 1642 DMEIK 1646 (1710)
T ss_pred HHHHc
Confidence 55544
No 286
>PLN03077 Protein ECB2; Provisional
Probab=95.81 E-value=0.096 Score=55.66 Aligned_cols=112 Identities=9% Similarity=-0.022 Sum_probs=81.0
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+..+...+.+.|++++|.+.+++. . ..|. ...|..+-..|..-++.+.+....+++++++
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~------------------~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-P------------------ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-C------------------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 334455555666666666655542 1 2222 3455555556677889999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------------------------EPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------------------------~p~~~~~~~~l~~~~~~~~ 346 (361)
|+++..|..++.+|...|++++|.+..+...+. .|...++...|..+..+++
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 765 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988777543 2445567777777766665
No 287
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.70 E-value=0.061 Score=52.62 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=93.0
Q ss_pred HHhccHHH-HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 216 KVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 216 ~~~G~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
..++-.|+ -+|+..+|+.+|..|+-+.+.. ..-.+++.+|.++.++|...+|--.+..|+.-.
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h----------------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSRH----------------NKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCcc----------------cccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 33444444 4789999999999999855421 233567889999999999999988888888888
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK---KELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~---~~l~~~~~~~~~~~~~~k~~ 355 (361)
|.-..-+|-+++++.++++|......|..+.+..|.-.... ...-.|.+++.+.-+++++.
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~ 343 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRS 343 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777799999999999999999999999999999744332 23333445554444444333
No 288
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.62 E-value=0.13 Score=50.48 Aligned_cols=92 Identities=16% Similarity=0.080 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----hhHH
Q 018089 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKAL 301 (361)
Q Consensus 226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~----~ka~ 301 (361)
...+.|.+....... .-|.........|.++...|+.++|++.+++++...... .-.+
T Consensus 247 ~~~~~a~~lL~~~~~------------------~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK------------------RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred CCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 344555666666655 667888889999999999999999999999999644332 3578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
+.+|.++..+.+|++|..++.+..+.+.-.+..+
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 8999999999999999999999999765444333
No 289
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.02 Score=54.66 Aligned_cols=100 Identities=16% Similarity=0.051 Sum_probs=76.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHH-hhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
....+.++|-++|..+.|..+..+|.+||+ ...-....-.+.. ...-.......+.+|.|..|+..|+.-.|-+++.+
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~-~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK-TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc-ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 345568899999999999999999999996 2211111000000 11113445668899999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhc
Q 018089 290 AMRDGDDNVKALFRQGQAYMAL 311 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~ 311 (361)
+...--.++..|.|+|.|..+.
T Consensus 361 av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 9999889999999999998763
No 290
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.56 E-value=0.077 Score=50.96 Aligned_cols=115 Identities=19% Similarity=0.297 Sum_probs=68.9
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE 97 (361)
Q Consensus 18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~ 97 (361)
.=|.|+||.+.||+|+..|+++..-.... ---..+|=+.++.++-=|+. .++..+-+||.+
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~~---------VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P 435 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTGLKTKP---------VGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTP 435 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeeEeccCc----------hhccccCCCCCC
Confidence 46889999999999999999986432110 01134555556644443332 234446677776
Q ss_pred CCCCCceEEEeeeCCCC---CCCcceEee--cCCCC-CCCCCceEEeEEecChHHHHHHhc
Q 018089 98 LKHERKGMLSMANAGPN---TNGSQFFIT--TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 98 ~~~~~~g~~~~~~~~~~---~~~sqF~i~--~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~ 152 (361)
-.....|.|+|.|.... ..|=.|-=+ .+|.. .+++++ ++|+|+++++.++++..
T Consensus 436 ~~~V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 436 EDKVEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE 495 (503)
T ss_pred CCccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence 66677899998875421 112111110 12222 355544 56999999999877765
No 291
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.45 E-value=0.029 Score=50.68 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=70.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.|......+-.+.+.|+.++|...++-|+. +.|..+.++...|...-.-++.-+|=++|-+|
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 455556677788899999999999999999 88889999999999988889999999999999
Q ss_pred hhcCCCchhHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQA 307 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~ 307 (361)
|.++|.+++|+-+++..
T Consensus 177 LtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 177 LTISPGNSEALVNRART 193 (472)
T ss_pred eeeCCCchHHHhhhhcc
Confidence 99999999999998753
No 292
>PRK10941 hypothetical protein; Provisional
Probab=95.41 E-value=0.081 Score=47.82 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=68.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.+-+.++=..+.+.++|+.|+.+.+..+. +.|.++.-+.-+|.+|.+++.+..|+.+++..+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34456667788999999999999999999 888888889999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAY 308 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~ 308 (361)
+..|+.+.+-.-+.++.
T Consensus 243 ~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 243 EQCPEDPISEMIRAQIH 259 (269)
T ss_pred HhCCCchhHHHHHHHHH
Confidence 99999987766655543
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.39 E-value=0.03 Score=34.49 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.++.|+|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777654
No 294
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.054 Score=50.17 Aligned_cols=104 Identities=26% Similarity=0.405 Sum_probs=69.3
Q ss_pred eeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCc
Q 018089 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF 96 (361)
Q Consensus 17 ~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (361)
.-.+.++|.++ +|+++++|++|.+.++ - ||-- +.++-.+..+..+.+.+.||+
T Consensus 202 fTy~eve~s~n-sP~saEH~lalmedG~---------------l--ri~~---------~tntfis~~~lq~~~~~~en~ 254 (512)
T COG4070 202 FTYFEVELSRN-SPKSAEHFLALMEDGT---------------L--RIDV---------TTNTFISDDTLQEEKVPEENF 254 (512)
T ss_pred EEEEEEEeCCC-CchhHHHHHHHhhcce---------------E--EEEE---------eccceeeccccccccCChhhh
Confidence 45788899887 8999999999987541 1 2211 111111223344677788888
Q ss_pred CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089 97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 97 ~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~ 152 (361)
.+. .+|.++..|.|-+ ...-+|.-.+-|. .-.|.|+|+|++|+++++-...
T Consensus 255 d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 255 DLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 754 4799999988743 4566776654432 1248999999999999875554
No 295
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.21 E-value=0.12 Score=38.64 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=48.1
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
..+.++|.+|++.+.+...+........ .......+..++|.++...|++++|+..+++|+++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSS---------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccch---------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4578999999999999998654221000 1223455678899999999999999999999997754
No 296
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.14 E-value=0.52 Score=42.99 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHhccHHHH-hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 215 IKVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 215 ~~~~G~~~~~-~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
+...|..-+. .++.+.|...|+.+++ .-+.+...|......++++++.+.|...+++++..
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLK------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHH------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 3444555445 6777889999999999 66677788888888999999999999999999987
Q ss_pred CCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089 294 GDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 294 ~p~~~---ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 336 (361)
-|... ..|-+...-=...|+.+......+++.++.|++..+..
T Consensus 100 l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 100 LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 65543 45666666667789999999999999999988655443
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=1.2 Score=38.98 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=75.0
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
+-+..-||.+--.++|..|=..|.+|..+-.... ........|.-.+.||.+ .+.++|+.+++++|+
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~------------skhDaat~YveA~~cykk-~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG------------SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIE 101 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC------------CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHH
Confidence 3334445666667889999999988877332110 112345667777777755 499999999999998
Q ss_pred cCCCc------hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC
Q 018089 293 DGDDN------VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 293 ~~p~~------~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~ 331 (361)
+--+- ++-+..+|.+|..- .++++|+..|+.+-+.-..+
T Consensus 102 Iyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 102 IYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred HHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 86443 45566778888764 89999999999998876543
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.07 E-value=1.1 Score=40.69 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=76.8
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhc----CCC
Q 018089 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD----GDD 296 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~----~p~ 296 (361)
..++|+++.|..+|.|+-....... ..........++|.|...++.+ +++.|+.+.++|+++ .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~----------~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLD----------PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCC----------cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 4678999999999999976442110 1134566788999999999999 999999999999977 321
Q ss_pred ---c-------hhHHHHHHHHHHhcCCHH---HHHHHHHHHHhhCCCCHHHHHH
Q 018089 297 ---N-------VKALFRQGQAYMALNDVD---AAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 297 ---~-------~ka~~~~g~~~~~~~~~~---~A~~~~~~a~~l~p~~~~~~~~ 337 (361)
. ...+..++.+|...+.++ +|...++.+-.-.|+.+.+...
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L 126 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL 126 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1 457777899999988765 4455555555556776666633
No 299
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.05 E-value=0.12 Score=36.90 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=53.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+....+.|..+|.+.+.++|+..++++|+-.. ..+....++-.+..+|...|+|.+++.+...=
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999999998332 23456667777888888999999988877655
Q ss_pred hhc
Q 018089 291 MRD 293 (361)
Q Consensus 291 l~~ 293 (361)
+.+
T Consensus 70 ~~~ 72 (80)
T PF10579_consen 70 LEI 72 (80)
T ss_pred HHH
Confidence 443
No 300
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.87 E-value=0.056 Score=33.01 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
.+|.++|.+....++|++|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56788888889999999999999988876
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=0.95 Score=39.90 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 270 SSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 270 la~~~~~l~~~~~Ai~~~~~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
.|.=.++..+.++|++.|++++.+-... ...+-..+.++..++.|++|...+.+
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 3333344445555555555555432111 22233334445555555555544443
No 302
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.84 E-value=0.043 Score=47.57 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=55.1
Q ss_pred cHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
..+.+.++.+.|.+.|.+++. +.|....-|..++....+.|+++.|...|.+.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456678999999999999999 777888999999999999999999999999999999976
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.76 E-value=0.069 Score=32.77 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 304
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.62 E-value=0.33 Score=51.39 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=84.9
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc----C---CHHHHHHHHHHH
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----G---DLKGALLDTEFA 290 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~---~~~~Ai~~~~~a 290 (361)
..+++...+.|+.|+..|++.-..+|.. ..--.+....|.+.+.+ + .+.+|+.-+++.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGR---------------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCc---------------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 3567888999999999999987754421 12234556666665543 2 466666666554
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
-. .|.-+--|...|.+|..+|+|++-++.|..|++.-|+++.+-.....+--++.+.-.
T Consensus 546 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (932)
T PRK13184 546 HG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLY 604 (932)
T ss_pred cC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH
Confidence 32 344566788889999999999999999999999999999888777776666665443
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.58 E-value=0.28 Score=44.40 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 258 ~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
.+......++..++..+...++++.+++..++.+..+|-+.++|.++-.+|+..|+...|+..|++..++
T Consensus 147 ~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 147 ALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999999999999999999999998774
No 306
>PRK00969 hypothetical protein; Provisional
Probab=94.57 E-value=0.2 Score=48.40 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=68.3
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCCCcC
Q 018089 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFE 97 (361)
Q Consensus 18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~ 97 (361)
.=|.|+||.+.||+|+..|+++..-.... ---..+|=+.++.++-=|+. .++..+-+||.+
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~~---------VG~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P 438 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTGLKTKP---------VGKLPVYFKYEDTYLFKGNI----------EYAKGLLPENTP 438 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcCCcccc---------cceeEEEEEeCCeEEEccCh----------hhccccCCCCCC
Confidence 35889999999999999999986542110 01134555566655553432 234446677776
Q ss_pred CCCCCceEEEeeeCCCCCC---CcceEee--cCCCC-CCCCCceEEeEEecChHHHHHHhc
Q 018089 98 LKHERKGMLSMANAGPNTN---GSQFFIT--TTRTS-HLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 98 ~~~~~~g~~~~~~~~~~~~---~sqF~i~--~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~ 152 (361)
-.....|.|+|.|...... |=.|-=. .+|.. .+++ .-++|+|+ +++-++++..
T Consensus 439 ~~~V~ag~IgvTN~a~k~~G~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 439 EDKVKAGEIGVTNMAAKYKGMIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CCccccceEeeechhhhcCceEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence 6667788888876542111 1111100 12222 3555 45679999 8888877665
No 307
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.56 E-value=0.28 Score=38.21 Aligned_cols=117 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA-- 290 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a-- 290 (361)
+.+..+|+..++.+++-.|+-+|++|+.+....+.....+ ...+--..+....|+|..+..+|+-+-.+.+++-|
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~e---l~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIE---LEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccccccc---HHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567789999999999999999999999876653222211 12244456677899999999999999999888654
Q ss_pred --hhcCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 291 --MRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 291 --l~~~p~~~ka~~~~g~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
+.+-|..+..- ..+ ...+|.=..|+-+| ++..| |+.+...+.
T Consensus 79 ~VltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq 123 (140)
T PF10952_consen 79 KVLTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQ 123 (140)
T ss_pred HHHHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHH
Confidence 45666543211 011 12344444555444 55677 455554443
No 308
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.47 E-value=0.47 Score=51.14 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAK 342 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~ 342 (361)
..|..|+..|.+-+.+++|.+.++..++.-....+.|...|..++..++-+.|...+.+|++.-|. +..+....+.++
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 467888899999999999999999999877788999999999999999999999999999999997 667777777776
Q ss_pred HHHHHHHH
Q 018089 343 KKIHERRE 350 (361)
Q Consensus 343 ~~~~~~~~ 350 (361)
=+..+.++
T Consensus 1611 Fk~GDaeR 1618 (1710)
T KOG1070|consen 1611 FKYGDAER 1618 (1710)
T ss_pred hhcCCchh
Confidence 66555544
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.44 E-value=0.64 Score=38.32 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 340 (361)
..-...+..+..+-+..++.+++...++..-.+.|.....-.--|..+...|+|.+|+..|+.+.+-.|..+.+...++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445566666677777777777777776667777777777777777777778888887777777777777777777777
Q ss_pred HHHHHHH
Q 018089 341 AKKKIHE 347 (361)
Q Consensus 341 ~~~~~~~ 347 (361)
|...+++
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 7665553
No 310
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.44 E-value=0.41 Score=35.51 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHhcCC
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALND 313 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~--~ka~~~~g~~~~~~~~ 313 (361)
.+|.+..+.+.+|.+++..|++++|++.+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999999877 3333333333444443
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.34 E-value=2 Score=35.49 Aligned_cols=112 Identities=13% Similarity=-0.062 Sum_probs=82.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+.+........++.+.+...+.-.-- +.|....+-.--|..++..|+|.+|+..++.+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45566667777777888888777765433 788888889999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
+-.|..+-+---++.|++.+++.+= ..+-..+++.. .++.+...+..+..
T Consensus 72 ~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~-~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 72 ERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESG-ADPDARALVRALLA 121 (160)
T ss_pred ccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcC-CChHHHHHHHHHHH
Confidence 9999888777788899999998641 11222344443 36666666655544
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=1.9 Score=41.76 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=77.8
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+.-+|-....-+.|+.|..++..|++... ......-+..|+|..|+..++-+. +-+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---------------~~dl~a~~nlnlAi~YL~~~~~ed----~y~ 425 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---------------SIDLQAFCNLNLAISYLRIGDAED----LYK 425 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---------------HHHHHHHHHHhHHHHHHHhccHHH----HHH
Confidence 3567777888888899999999999999998543 334567788999999999776544 333
Q ss_pred Hh-hcCCCc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 290 AM-RDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 290 al-~~~p~~----------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
++ .+.|.+ ..++|-.|.-.+..+++.+|...+.+.++..
T Consensus 426 ~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 426 ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 33 244442 4577888888999999999999999999886
No 313
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.75 Score=45.76 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.++.|-|.-.++..+|..++++|..-+..-|.+ +|..-.++.||..+.+.+.|.++++.|-+.+|.+.-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456778888999999999999999999776543 78888899999999999999999999999999987655544
Q ss_pred HH
Q 018089 339 AV 340 (361)
Q Consensus 339 ~~ 340 (361)
-.
T Consensus 435 ~~ 436 (872)
T KOG4814|consen 435 LQ 436 (872)
T ss_pred HH
Confidence 43
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.27 E-value=0.32 Score=42.45 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=58.5
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
-.+..|.-++.+|+......-+..|++.|.+|+..- ..+. ..-....+.+.+|.++.++|++++|+.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e------~~~~------~~~~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE------DFPI------EGMDEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC------cCCC------CCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 334556666666776666667777888888887611 1101 1112345788999999999999999999
Q ss_pred HHHHhhcCCCch-hHHHHHHH
Q 018089 287 TEFAMRDGDDNV-KALFRQGQ 306 (361)
Q Consensus 287 ~~~al~~~p~~~-ka~~~~g~ 306 (361)
+.+++.....+. ..+..+|.
T Consensus 188 fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 188 FSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHcCCCCCCcHHHHHHHH
Confidence 999998764333 34444443
No 315
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.27 E-value=0.29 Score=46.01 Aligned_cols=114 Identities=21% Similarity=0.177 Sum_probs=88.4
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+|..|...|+++.|++.|.++-.|+. .....+..|.|+=.+-..+++|.....+..+|..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT---------------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCT---------------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhc---------------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456778999999999999999999877764 3456678899999999999999999999999987
Q ss_pred cCC--------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHH
Q 018089 293 DGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALK--------LEPNDGGIKKELAVA 341 (361)
Q Consensus 293 ~~p--------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~--------l~p~~~~~~~~l~~~ 341 (361)
... -.+++...-|.+.+.+++|+.|...+-.+.. +.|.|..++-.|..+
T Consensus 216 t~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 216 TPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred CchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 621 1256777778888999999999988866532 235666666666554
No 316
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.16 E-value=0.31 Score=46.13 Aligned_cols=102 Identities=22% Similarity=0.090 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh---------hc-
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDE-GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---------RD- 293 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al---------~~- 293 (361)
...|.++...|..++.... +.. -......|..+..+..++.++..+|+.+.|.+.+++|| ..
T Consensus 7 s~~Y~~~q~~F~~~v~~~D-------p~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~ 79 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHD-------PNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFS 79 (360)
T ss_pred CHHHHHHHHHHHHHHHccC-------HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666665110 000 00113678899999999999999999999999999998 22
Q ss_pred ----CCC------------c---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHH
Q 018089 294 ----GDD------------N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGG 333 (361)
Q Consensus 294 ----~p~------------~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-~~~ 333 (361)
++. | ..++++....+.+.|.+..|.++.+-.+.+||. |+.
T Consensus 80 ~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 80 PFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred hhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 221 1 568999999999999999999999999999998 653
No 317
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.79 E-value=0.21 Score=30.09 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q 018089 299 KALFRQGQAYMALNDVDAAVES--FEKALKLEPND 331 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~--~~~a~~l~p~~ 331 (361)
+.++.+|..+...|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777777788888888887 44677776654
No 318
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.16 Score=46.59 Aligned_cols=95 Identities=11% Similarity=-0.049 Sum_probs=68.1
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
++-.-..+|-.|+-..-...+++.+..++. -.|...-+.--.|.+....|-|++|.+..++|++++
T Consensus 140 ~kfsh~a~fy~G~~~~~k~ai~kIip~wn~--------------dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN 205 (491)
T KOG2610|consen 140 VKFSHDAHFYNGNQIGKKNAIEKIIPKWNA--------------DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN 205 (491)
T ss_pred hhhhhhHHHhccchhhhhhHHHHhccccCC--------------CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC
Confidence 333445556666666666677776653221 234455566677889999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
|.+.-+...++-++...+++.++.+.+.+
T Consensus 206 ~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 206 RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 99888888788777777777777766544
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.50 E-value=1.1 Score=41.97 Aligned_cols=117 Identities=16% Similarity=0.096 Sum_probs=79.4
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHH-hhhhccccC-------------C--CCccchhhHHHHHHHHHHHHHHHHHhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKE-------------G--IDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
...+.++.+...|+-.+|+...+..+. .+....... . ...............++..+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 345556667777777788877777766 222110000 0 000001223455667888888888788
Q ss_pred ------CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCC
Q 018089 278 ------GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV-----------------DAAVESFEKALKLEPN 330 (361)
Q Consensus 278 ------~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~-----------------~~A~~~~~~a~~l~p~ 330 (361)
+..++++..|.+|+.++|.+.++|+..|..+..+-+. ..|+..|-+++.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8999999999999999999999999999887765322 3478888888888776
No 320
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.19 E-value=0.6 Score=42.11 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 258 ~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
.+......++...|..|.+.|.+.+|++.+++++.++|-+...+.-+-.++..+|+-=.|+..|++..+
T Consensus 273 rle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 273 RLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 355566677777888899999999999999999999999999999999999999998788877776543
No 321
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.13 E-value=0.43 Score=35.63 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC---------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 274 KLKLGDLKGALLDTEFAMRDGDD---------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 274 ~~~l~~~~~Ai~~~~~al~~~p~---------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
.++.++|.+|++.+.+....... ..-++.++|.++...|++++|+..+++|+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45789999998888887754321 2467889999999999999999999999998653
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.09 E-value=0.98 Score=45.45 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=78.9
Q ss_pred HHHhccHHHHh----h-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CHHHHHHH
Q 018089 215 IKVFGNEHYKK----Q-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLD 286 (361)
Q Consensus 215 ~~~~G~~~~~~----g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Ai~~ 286 (361)
...+|..+.+. . ++..|+.+|.++.+ -..+.+.+++|.|+..-. ++..|..+
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~--------------------~g~~~a~~~lg~~~~~g~~~~d~~~A~~y 350 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE--------------------LGNPDAQYLLGVLYETGTKERDYRRAFEY 350 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHh--------------------cCCchHHHHHHHHHHcCCccccHHHHHHH
Confidence 44577777763 3 78899999999966 234567788999988765 67899999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMAL----NDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~----~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
|..|.... ++.|.+++|.||..= .+.+.|..+++++.+.. ++.+...+...
T Consensus 351 y~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 351 YSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred HHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 99998765 789999999998753 48899999999999987 34444444433
No 323
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.07 E-value=0.48 Score=48.74 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=79.8
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~ 296 (361)
-.|-.+++.|++++|..+.+. +.. ..+.+-..+--+-.||..++++++|...|++++..+|.
T Consensus 48 LkaLsl~r~gk~~ea~~~Le~-~~~-----------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKLLEA-LYG-----------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHhcCchhHHHHHhh-hcc-----------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 357788999999999955543 331 22224445667778999999999999999999999998
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHH
Q 018089 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-IKKELAVAKKKI 345 (361)
Q Consensus 297 ~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~~l~~~~~~~ 345 (361)
.+.++.+-.+|.+-+.|.+=.+.--+..+..|.++- .|..+..+.+.+
T Consensus 110 -eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 110 -EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 899999999999988886555444445557787774 444444444433
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.96 E-value=1.7 Score=40.51 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=96.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+...+..+.+.|+++.|.....++..+... .....+.+..-.|......|+-.+|+...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~--------------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPS--------------SESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc--------------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667888899999999999999999998763211 11114556677778888889999999888877
Q ss_pred hhc--C-C-------------------------------CchhHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCC
Q 018089 291 MRD--G-D-------------------------------DNVKALFRQGQAYMAL------NDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 291 l~~--~-p-------------------------------~~~ka~~~~g~~~~~~------~~~~~A~~~~~~a~~l~p~ 330 (361)
+.. . + ..+++++.+|.-...+ +..++++..|+++.+++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 761 1 0 1157788888877777 8999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 018089 331 DGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~ 350 (361)
...++..++.....+-+...
T Consensus 291 ~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 291 WEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 98888888887777665554
No 325
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.95 E-value=0.22 Score=45.28 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR-QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~-~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
-+.++.+|...+.-..+.+-|.+.-..|.+++..+|.++..|.. -+--+...++++.+.+.|.++++++|.++.+|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 45677788888887788889999999999999999999999877 45567888999999999999999999999888776
Q ss_pred HHHH
Q 018089 339 AVAK 342 (361)
Q Consensus 339 ~~~~ 342 (361)
-.++
T Consensus 183 fr~E 186 (435)
T COG5191 183 FRME 186 (435)
T ss_pred HHHH
Confidence 5544
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.79 E-value=5.3 Score=33.68 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD---NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~---~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
......++..+|.-|.+.|++++|++.|.++....-. -...++++-.+....+++.....++.++-.+-
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445578999999999999999999999998875432 26788888889999999999999999997764
No 327
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.69 E-value=2.6 Score=38.32 Aligned_cols=106 Identities=24% Similarity=0.195 Sum_probs=78.1
Q ss_pred hHHHHHhccHHHH----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHH-HHHHHHHHHHHHhc----C---C
Q 018089 212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKL----G---D 279 (361)
Q Consensus 212 a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l----~---~ 279 (361)
+.....+|..+.. ..++.+|..+|.+|.+ ..... ..+.++++.+|..- + +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~------------------~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAK------------------LGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH------------------cCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 4456667777776 5599999999999987 21111 34467777777653 1 2
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
...|+..+.+|-... +..+.+++|.+|.. ..++++|..+|+++.+... ......++
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 337889998888877 88999999988855 3489999999999999875 55555555
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=2.3 Score=36.27 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=69.8
Q ss_pred ccHHHHhhhH---HHHHHHHHHHHHhhhhccccCCCCccchhhHHH------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 219 GNEHYKKQDY---KMALRKYRKALRYLDICWEKEGIDEGKSSSLRK------TKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 219 G~~~~~~g~y---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
|..++...+- .+|-..|++++..+....+ ........+.. .-.-.-+-+|..+...+++++|+..++.
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~---~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP---KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5555655544 4788889999886643222 11111111111 1223346677788899999999999999
Q ss_pred HhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 290 AMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 290 al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
++....+. .-+-.|+|.+...+|++++|+..++..
T Consensus 115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 99765543 456788999999999999999888653
No 329
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.34 Score=45.09 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=66.3
Q ss_pred eEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceE--EeCcCCCCCCCCCCccCCCCCCCCCc
Q 018089 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMI--QGGDISAGDGTGGESIYGLKFEDENF 96 (361)
Q Consensus 19 ~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~i--q~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (361)
-|.||||.+.||+++..|+.+..-.. .+ --...+|=+-++..+ --|+. .++....+||.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~-kp--------VGkL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKT-KP--------VGKLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhccccc-cc--------ccceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence 58899999999999999999875431 11 112356666676322 22322 24555667776
Q ss_pred CCCCCCceEEEeeeCC-CC--CCC-----cceEeecCCCC-CCCCCceEEeEEecChHHHHHHhc
Q 018089 97 ELKHERKGMLSMANAG-PN--TNG-----SQFFITTTRTS-HLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 97 ~~~~~~~g~~~~~~~~-~~--~~~-----sqF~i~~~~~~-~ld~~~~vfG~v~~g~~vl~~i~~ 152 (361)
+-....+|.|+..|.. ++ ..| |.-| +|.. .+.+ .-++|++++|.+-+..|..
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~GmIGVRL~dsdef---GPTGE~Fe~-TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMGMIGVRLEDSDEF---GPTGEKFEG-TNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccceeEEEecccccc---CCCCCcccc-ceeehhhccChHHhccccc
Confidence 6555566666655433 11 111 1111 2221 2333 5578999999999888876
No 330
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.56 E-value=4.2 Score=37.87 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 259 LRKTKSQIFTNSSACKLKLGD------------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~------------~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
.+|.++.+|..+....-.+-. .+..+..+++||+.+|++.+.+..+-.+.....+-++..+-+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888888888776555432 45678899999999999999999988888899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 018089 327 LEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 327 l~p~~~~~~~~l~~~~~~ 344 (361)
.+|++..+|..+-.-...
T Consensus 94 ~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQS 111 (321)
T ss_pred HCCCChHHHHHHHHHHHH
Confidence 999998887766554433
No 331
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.33 E-value=1.5 Score=34.16 Aligned_cols=74 Identities=18% Similarity=0.068 Sum_probs=56.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+--+--+.-.+...|+|++++..-.++|.|++.....+ +.-....+.+-+++|..+-.+|+.++|+..++.+-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 44455667778899999999999999999997654332 12345677788999999999999999999999887
Q ss_pred h
Q 018089 292 R 292 (361)
Q Consensus 292 ~ 292 (361)
+
T Consensus 128 E 128 (144)
T PF12968_consen 128 E 128 (144)
T ss_dssp H
T ss_pred H
Confidence 5
No 332
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.25 E-value=1.4 Score=42.40 Aligned_cols=121 Identities=11% Similarity=0.137 Sum_probs=68.1
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CC-----HHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GD-----LKG 282 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~-----~~~ 282 (361)
+........|-.++..|+|.+|+..|+..|..++-..... +++..........|...+-.+-+++ +. .++
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~---~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~ 278 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVES---REEEDEAKELIEICREYILGLSIELERRELPKDPVED 278 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 3344556679999999999999999999999776543332 2222223333333332222222222 22 222
Q ss_pred HHHHHHHHh-----hcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 283 ALLDTEFAM-----RDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 283 Ai~~~~~al-----~~~p~~~ka~~~~g~-~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
..+.++-|. .+.|.+.-.-.|.|+ ..++.++|..|...-++.+++.|..+.
T Consensus 279 ~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 279 QKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 323333333 445544444455555 356789999999999999999997653
No 333
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.06 E-value=2.5 Score=40.03 Aligned_cols=111 Identities=16% Similarity=0.051 Sum_probs=71.4
Q ss_pred HHhccHHHH---hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh---------cCCHHHH
Q 018089 216 KVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK---------LGDLKGA 283 (361)
Q Consensus 216 ~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---------l~~~~~A 283 (361)
...|..+-+ .|+.++|+..+..++.- ..+..+..+.-+|.+|-. ....++|
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~-----------------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkA 245 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLES-----------------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKA 245 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhc-----------------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHH
Confidence 345666666 88999999999987651 222334445555554432 2347788
Q ss_pred HHHHHHHhhcCCCc---------------------------------------------hhHHHHHHHHHHhcCCHHHHH
Q 018089 284 LLDTEFAMRDGDDN---------------------------------------------VKALFRQGQAYMALNDVDAAV 318 (361)
Q Consensus 284 i~~~~~al~~~p~~---------------------------------------------~ka~~~~g~~~~~~~~~~~A~ 318 (361)
+.+|.++.+++|+. ...+-.++.+..-.|++++|+
T Consensus 246 i~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~ 325 (374)
T PF13281_consen 246 IEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI 325 (374)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888777653 111222444555678999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 319 ESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 319 ~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
+.+++++++.|..-.....+..++.
T Consensus 326 ~a~e~~~~l~~~~W~l~St~~ni~L 350 (374)
T PF13281_consen 326 QAAEKAFKLKPPAWELESTLENIKL 350 (374)
T ss_pred HHHHHHhhcCCcchhHHHHHHHHHH
Confidence 9999999998876655555554433
No 334
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=5 Score=35.88 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=91.4
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCchhHHH
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~~p~~~ka~~ 302 (361)
+...-..|+..-..+|+ ++|-+-.+|..|-.|...++ +..+-+++.++.+.-+|.|...|.
T Consensus 55 ~~E~S~RAl~LT~d~i~------------------lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWH 116 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIR------------------LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWH 116 (318)
T ss_pred ccccCHHHHHHHHHHHH------------------hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHH
Confidence 44555778888888888 88888888888888887775 788889999999999999999999
Q ss_pred HHHHHHHhcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 303 RQGQAYMALNDVD-AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 303 ~~g~~~~~~~~~~-~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.+-.+...+|++. .-++..++++..+..|=.+|+...-+-+..+..+.+
T Consensus 117 HRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 117 HRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 9999999999888 888999999998888878888777777666654443
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.85 E-value=0.23 Score=30.34 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
.+|..+|.+.+..++|.+|+.++.++|.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999764
No 336
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.67 E-value=5.7 Score=38.26 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHH
Q 018089 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND----GGIKKELAVAKKKI 345 (361)
Q Consensus 271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~----~~~~~~l~~~~~~~ 345 (361)
|.-.+..|+|.+|.-++.=..+++| ++.++--+|.|++...+|++|-.++.+ +-|++ ..+.+.+..|++-+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence 3446678999999999999999999 999999999999999999999998864 44432 23445555554443
No 337
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.07 E-value=0.83 Score=36.43 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g 305 (361)
.-.+.+.+|..+.++++|++++.+++..|+..|+|..|.--.-
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4567889999999999999999999999999999987765443
No 338
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.03 E-value=3.9 Score=41.01 Aligned_cols=118 Identities=8% Similarity=0.045 Sum_probs=71.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..|.+-|..-.+..+++.|++..++|..........--+..+..+..--....+|...+...-.+|-++.....|++.
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46666777777788889999999888887633211101111122222233345566777777777777777777777777
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
|.+.=-.+....+.|..+.....+++|-+.|++-+.|-
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 76665555666666666655555555555555555554
No 339
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=1.7 Score=42.86 Aligned_cols=103 Identities=22% Similarity=0.123 Sum_probs=76.4
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhcCCCchhHHH
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL-LDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai-~~~~~al~~~p~~~ka~~ 302 (361)
..++...|+-....++. .++..+.++.|++......+....++ .++.-+....|++.....
T Consensus 79 ~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 79 PLADSTLAFLAKRIPLS------------------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred ccccchhHHHHHhhhHh------------------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 34445555555666665 77888889999999888777655554 455558888898877666
Q ss_pred HH------HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 303 RQ------GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 303 ~~------g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.+ +.....+++-+++...+.++..+.|.++.+...+....++
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 65 8888888999999999999999999887776666665333
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.90 E-value=5.5 Score=41.23 Aligned_cols=90 Identities=19% Similarity=0.104 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh----------hcCCC----------chhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAM----------RDGDD----------NVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al----------~~~p~----------~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
-..|+|.|.-+...++.+.|+++|+++= .-+|. +.+.|.+-|+-+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3457888888888899999999998764 22332 245666778888899999999999987
Q ss_pred HHhh---------------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 324 ALKL---------------------EPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 324 a~~l---------------------~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
|-.. ...|..+...|+...+..++..++-+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 7543 23455566666666665555555443
No 341
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.84 E-value=3.7 Score=38.81 Aligned_cols=96 Identities=18% Similarity=0.026 Sum_probs=72.0
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+...+....-.|+|+.|.+.|+-.+. .-.....-+..|=.-...+|..+.|+.+.+.|-.
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~ 182 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAE 182 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3444556677778999999999998876 1111111122222334568999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..|.-.-++.-.=...+..|+++.|++.++....
T Consensus 183 ~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 183 KAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999988888888889999999999998876554
No 342
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.80 E-value=1.5 Score=47.25 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=95.5
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+....+.|......+.|.+|.+ ..+++.++... ...+.|....+|..+|..+.+++++++|+..+.+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v----------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV----------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh----------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 456777888888888899998888 66666655322 1136788899999999999999999999999999
Q ss_pred Hhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHH
Q 018089 290 AMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 290 al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~ 346 (361)
|.-+ .|+...++.+++...+..++...|+..+.+++++ .|.-..+..++..+...+.
T Consensus 999 a~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 999 ACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred ceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHH
Confidence 9844 2455789999999999999999999999998876 3443344445555544333
No 343
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.78 E-value=0.98 Score=40.73 Aligned_cols=62 Identities=16% Similarity=-0.064 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
|+.+|.+|+.+.|++-..|..+|.++...++.=+|+-+|-+++-..-..+.+..+|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987755568888888887776
No 344
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.77 E-value=4 Score=35.89 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=68.1
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH-HHH-HHHHHHHhh-cC-CCch
Q 018089 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-KGA-LLDTEFAMR-DG-DDNV 298 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-~~A-i~~~~~al~-~~-p~~~ 298 (361)
|..|+|+.|++.-.-||+. .....+.-........+.-...-|....+.|.. +-. ...+..... .+ |+.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~------~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v 167 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEH------GLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV 167 (230)
T ss_pred eeccCHHHHHHHHHHHHHc------CCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH
Confidence 5679999999999999882 111111111123333444445555555666652 111 122222221 11 3444
Q ss_pred --hHHHHHHHHHH---------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 299 --KALFRQGQAYM---------ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 299 --ka~~~~g~~~~---------~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
|.|--.|.++. ..++.+.|+..|++|++++| +..+...+..+..+++.
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHhh
Confidence 44444555552 45688899999999999997 45677777777777764
No 345
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.70 E-value=4.5 Score=31.15 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=62.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 018089 270 SSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
+|.-++..|++-+|++..+..+..++++. -.+..-|.++..+.. .-.|++.+.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999999888766 445556777765432 3478999999999999886666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018089 336 KELAVAKKKIHERREQEKK 354 (361)
Q Consensus 336 ~~l~~~~~~~~~~~~~~k~ 354 (361)
..|+.-.....-+++.-++
T Consensus 82 ~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKK 100 (111)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 6666654445555554433
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.69 E-value=0.39 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 018089 300 ALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
+.+.+|.++..+|++++|.+.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666554
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.29 E-value=4.1 Score=33.17 Aligned_cols=87 Identities=13% Similarity=-0.070 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
.-...+..+..+.+...+.+++....+..=.+.|.....-.--|..+...|+|.+|+..|+...+-.+.-+..+.+++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 33444555555666677777777766666667788888878888888888888888888888777666667777777777
Q ss_pred HHHHHHH
Q 018089 342 KKKIHER 348 (361)
Q Consensus 342 ~~~~~~~ 348 (361)
...+++-
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 6666543
No 348
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.08 E-value=1.2 Score=43.38 Aligned_cols=76 Identities=22% Similarity=0.152 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 277 l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
...+..|+.+|.+++...|+....|.+++.+++..+ +--.|+.+...|++++|....++..|..+...+...+++.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 445788999999999999999999999999988754 6668999999999999999999999999999988887764
No 349
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.98 E-value=1.8 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=30.1
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhh
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~ 244 (361)
..|..+-..|..+=+.|+|.+|+.+|..|++++..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 35667778888889999999999999999998754
No 350
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.74 E-value=1.9 Score=30.02 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=30.3
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
+.|..+...|..+=+.|+|++|+.+|.+|++++...
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 456677778888889999999999999999977644
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.66 E-value=18 Score=37.75 Aligned_cols=108 Identities=13% Similarity=0.037 Sum_probs=82.7
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+.-....+..+....+|.+|-....++...++.... ...........--+|.+....+++++|+..++.++
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~---------~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMH---------SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc---------cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 333445577778889999999888888775442200 11333455666778889999999999999999999
Q ss_pred hcCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 292 RDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 292 ~~~p~~-----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
..=|.+ .-++...|.+..-.|++++|......+.++.
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 876644 5688889999999999999999999988873
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.60 E-value=1.2 Score=28.07 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 301 LFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
.+.+|.+|..+|+++.|...++..+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35678888888888888888888774
No 353
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=7.5 Score=36.94 Aligned_cols=106 Identities=12% Similarity=-0.006 Sum_probs=84.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCch
Q 018089 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGDDNV 298 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~Ai~~~~~al~~~p~~~ 298 (361)
...+...+++-+.+-..+|+ .+|..-.+|+.|..+..+.. +|..-++.|+++|+.||.|-
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~------------------~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALK------------------VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc
Confidence 33445567777888888888 88999999999999998775 48999999999999999998
Q ss_pred hHHHHHHHHHHhc-CC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 299 KALFRQGQAYMAL-ND---VDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 299 ka~~~~g~~~~~~-~~---~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.+|..+-.++... .. ..+-+++..+++.-++.|=.+|-....+...
T Consensus 146 h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 146 HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred cchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 8876655444433 33 6777889999999999998888877776653
No 354
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.66 E-value=0.91 Score=43.36 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh--------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAM--------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al--------~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
...+..++.-+|+|..|++..+..= +..+.....+|..|-||+++++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888999999998765431 22345678999999999999999999999987654
No 355
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.56 E-value=1.1 Score=40.24 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
..+.=..+...++++.|+.+-++.+. ++|.++.-+.-+|.+|.++|.+.-|+++++..++.-
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 34445567789999999999999998 778888888999999999999999999999999999
Q ss_pred CCchhHHHHHHHH
Q 018089 295 DDNVKALFRQGQA 307 (361)
Q Consensus 295 p~~~ka~~~~g~~ 307 (361)
|+...+-.-++..
T Consensus 246 P~~~~a~~ir~~l 258 (269)
T COG2912 246 PDDPIAEMIRAQL 258 (269)
T ss_pred CCchHHHHHHHHH
Confidence 9887776655543
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.52 E-value=4.4 Score=35.25 Aligned_cols=68 Identities=15% Similarity=0.003 Sum_probs=58.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 340 (361)
-.++-+..++||...+.-++-.|.+.....-+-+.+.-.|+|++|...++-+-+++|++..-...++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 34577889999999999999999999998999999999999999999999999999987644444333
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.48 E-value=13 Score=38.04 Aligned_cols=121 Identities=16% Similarity=0.105 Sum_probs=87.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcc-ccCCCCcc-------chhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-EKEGIDEG-------KSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (361)
+..+.-.|......+..+.|.+++.++++.+.... ..+..... ...........+....+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 44455568888888888899999999999887765 11111111 11233445666778888889999999999
Q ss_pred HHHHHHHhhcC---C------CchhHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCCH
Q 018089 284 LLDTEFAMRDG---D------DNVKALFRQGQAYMALNDVDAAVESFE--------KALKLEPNDG 332 (361)
Q Consensus 284 i~~~~~al~~~---p------~~~ka~~~~g~~~~~~~~~~~A~~~~~--------~a~~l~p~~~ 332 (361)
......+.... | ..+..+|-.|..+...|+.+.|...|. .+....+.+.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 88888777542 2 247889999999999999999999997 5555555443
No 358
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.46 E-value=3.9 Score=41.17 Aligned_cols=116 Identities=20% Similarity=0.053 Sum_probs=83.6
Q ss_pred hHHHHHhccHHHH-----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-----CHH
Q 018089 212 VDSIKVFGNEHYK-----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK 281 (361)
Q Consensus 212 a~~~~~~G~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~ 281 (361)
+......|..++. .++.+.|+.+|+.+.+-.... .......+.+.+|.+|.+-. ++.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-------------a~~~~~~a~~~lg~~Y~~g~~~~~~d~~ 310 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-------------ATKGLPPAQYGLGRLYLQGLGVEKIDYE 310 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-------------HhhcCCccccHHHHHHhcCCCCccccHH
Confidence 4445556666653 468999999999997621000 11113446788999998843 778
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.|+..+.+|-.+. ++.+.+++|.++..-. ++..|..+|..|.+. .+..+...++.+...
T Consensus 311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 8999999998887 7889999999988766 678999999999875 456666666666543
No 359
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.44 E-value=14 Score=37.76 Aligned_cols=121 Identities=15% Similarity=0.094 Sum_probs=88.3
Q ss_pred hhHHHHHhccHHH-HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
.+.....+|..++ ...+++.|..+.+|++.++.. ..+......+..-++.++.+.+... |+..+++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~ 124 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER------------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDK 124 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence 5778888999998 688999999999999886532 1255556667777899998888887 9999999
Q ss_pred HhhcCCC----chhHHHHHHHH--HHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Q 018089 290 AMRDGDD----NVKALFRQGQA--YMALNDVDAAVESFEKALKLE--PNDGGIKKELAVAKKK 344 (361)
Q Consensus 290 al~~~p~----~~ka~~~~g~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~ 344 (361)
+|+.-.. .+.-.+++-.+ +...+++..|++.++....+. ..++.+...+...+..
T Consensus 125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~ 187 (608)
T PF10345_consen 125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL 187 (608)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 9976544 34455555433 223379999999999998876 4666655554444333
No 360
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.25 E-value=1.4 Score=26.44 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCc
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTE--FAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~--~al~~~p~~ 297 (361)
..+..+|.++..+|++++|+..++ -+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 356788999999999999999944 888887754
No 361
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.68 E-value=2.4 Score=40.70 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=51.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.......|..+|.+|+|.++.-+-.-..+ ..| .+.+|..+|.|.+..++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 45567778889999999999988888877 666 7789999999999999999998887553
No 362
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.55 E-value=2.7 Score=37.53 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------chhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD------NVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~------~~ka~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
.....+...+|.-|+++|+|++|+..++.+...... ....+..+..|+..+|+.+..+...-
T Consensus 175 R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 175 RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344556677777777788888887777777755321 24666677777777777777665543
No 363
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=4.7 Score=36.66 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=47.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
+.-.+..+++.+|...+..++..+|.+..+...++.||...|+.+.|...|..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34456789999999999999999999999999999999999999988877654
No 364
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.25 E-value=1.7 Score=39.19 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 018089 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA 310 (361)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~ 310 (361)
|..+|.+|+. +.|.....|+.+|.++...++.=.|+-+|-+++...-....|.-++...+..
T Consensus 1 A~~~Y~~A~~------------------l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR------------------LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH------------------H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH------------------hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999 7888889999999999999999999999999998765568888888887777
No 365
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.12 E-value=2.1 Score=41.02 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=77.9
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
+-..+.-.|+|..|++..+-. ++ ..........+-.+..++..|-||+-+++|.+|+..+...|..=-..
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl---------~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DL---------NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-Cc---------ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556678888888765432 10 00011112455677889999999999999999999999888432111
Q ss_pred hhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Q 018089 298 VKALFRQGQAY-MALNDVDAAVESFEKALKLEPN--DGGIKKELAV-AKKKIHERREQEKKQYRKMF 360 (361)
Q Consensus 298 ~ka~~~~g~~~-~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~-~~~~~~~~~~~~k~~~~~~f 360 (361)
...+..+..-+ .-.+..|+....+.-++.+.|. +..+...+.+ -..++.+..+...+.|+.+|
T Consensus 198 k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF 264 (404)
T PF10255_consen 198 KNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF 264 (404)
T ss_pred hhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11112221111 1235667777778778888886 4545444443 33334444444556666665
No 366
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.99 E-value=3.8 Score=29.36 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=29.9
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
.|..+...|..+=+.|+|++|+.+|.++|.++...
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999988654
No 367
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.98 E-value=6.8 Score=35.06 Aligned_cols=89 Identities=18% Similarity=0.091 Sum_probs=71.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 272 ~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+++.+-..-..|+.....+|.++|-+.-.|..+-.++..++ +..+-++++...++-+|.|=.+|-..+.+-+.++...-
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 34556677889999999999999999888877777666655 78889999999999999999999988888888775543
Q ss_pred HHHHHHhhhc
Q 018089 351 QEKKQYRKMF 360 (361)
Q Consensus 351 ~~k~~~~~~f 360 (361)
.+-...++|+
T Consensus 131 rELef~~~~l 140 (318)
T KOG0530|consen 131 RELEFTKLML 140 (318)
T ss_pred chHHHHHHHH
Confidence 5555555554
No 368
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.93 E-value=6.7 Score=37.43 Aligned_cols=79 Identities=13% Similarity=0.094 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHhhcCC-Cc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 277 LGDLKGALLDTEFAMRDGD-DN----------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 277 l~~~~~Ai~~~~~al~~~p-~~----------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
.|+|..|++.|.+.-.+.. .. +-.--.+..||+.+++.+.|+.--.+.+-++|....-....+.+.+.+
T Consensus 196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L 275 (569)
T PF15015_consen 196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL 275 (569)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence 3445555555555544432 11 223345889999999999999999999999999988888888889999
Q ss_pred HHHHHHHHHH
Q 018089 346 HERREQEKKQ 355 (361)
Q Consensus 346 ~~~~~~~k~~ 355 (361)
+++.++.+.+
T Consensus 276 eRy~eAarSa 285 (569)
T PF15015_consen 276 ERYSEAARSA 285 (569)
T ss_pred HHHHHHHHHH
Confidence 9988876654
No 369
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=86.92 E-value=2.7 Score=34.07 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=55.0
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCce--EEeCcCCCCCCCCCCccCCCCCCCCC
Q 018089 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFM--IQGGDISAGDGTGGESIYGLKFEDEN 95 (361)
Q Consensus 18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (361)
-.++.+|..|.||+||+-|.+.- =|.+..+|=..-|-- +.-|++.. ....-||
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN 62 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFDP-----------FEPGREN 62 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-S
T ss_pred eEEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCc
Confidence 57899999999999999999986 278888887776653 34355431 0112244
Q ss_pred cCCCCCCceEEEee---eCCCCCC-C--cceEeecCCC--------CCCCCCceEEeEEecChHHHHHHh
Q 018089 96 FELKHERKGMLSMA---NAGPNTN-G--SQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIE 151 (361)
Q Consensus 96 ~~~~~~~~g~~~~~---~~~~~~~-~--sqF~i~~~~~--------~~ld~~~~vfG~v~~g~~vl~~i~ 151 (361)
... +..+|-|.+. ....+.+ | +..-|..+.. .++. -.+|++|.+|++-+.++-
T Consensus 63 ~T~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~ 129 (147)
T PF12903_consen 63 HTV-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEAC 129 (147)
T ss_dssp EES-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHH
T ss_pred Ccc-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHH
Confidence 332 3346777666 1111111 1 3333333322 2233 468999999998666554
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.90 E-value=22 Score=33.77 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=74.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCC------CCc-----cchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG------IDE-----GKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+..+...+..+..+|+++.|.+..++||=.+..+....- ... .-....+.....+.........+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 455667777788888888888888888766652222110 000 001112334445556666778889999
Q ss_pred HHHHHHHHHHhhcCCC-ch-hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 281 KGALLDTEFAMRDGDD-NV-KALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~-~~-ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..|+++|.-.+.+||. ++ -+++.+=......++|+--++.++....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999998 43 4455555555666788766666665444
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.78 E-value=12 Score=37.25 Aligned_cols=119 Identities=20% Similarity=0.026 Sum_probs=83.5
Q ss_pred HHhccHHHH---hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh-
Q 018089 216 KVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM- 291 (361)
Q Consensus 216 ~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al- 291 (361)
...|..+|+ ...|++|...|.-|....+ ...-.......|..+..++.+|..+..+|+.+-|....+++|
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d------~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHD------PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcC------CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 345666653 5667788888777766321 011111123468889999999999999999887777777766
Q ss_pred ----hc----------------CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Q 018089 292 ----RD----------------GDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAV 340 (361)
Q Consensus 292 ----~~----------------~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 340 (361)
.+ .|.| ..++++.-+.+...|.+..|.++++-.+.++|. |+.....+-.
T Consensus 313 ~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID 385 (665)
T KOG2422|consen 313 VFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLID 385 (665)
T ss_pred HHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHH
Confidence 11 2222 568888888889999999999999999999998 7755444433
No 372
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=5.6 Score=39.47 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=60.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCCCCHHHHHHH
Q 018089 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKEL 338 (361)
Q Consensus 270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~-a~~l~p~~~~~~~~l 338 (361)
++..+..++....+......++..+|++.+++.++|.+....+....+...+.. +....|.|......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 788888899999999999999999999999999999999888877766665555 899999998877777
No 373
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.47 E-value=7.5 Score=34.67 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~ 349 (361)
......+|.-|+.+|+|++|+..|+.+...--. ...+...+.+|...+++.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 345568899999999999999999999665332 2356666666666665544
No 374
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.10 E-value=4.5 Score=32.73 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
.....++...+..|+|.-|...++.++..+|+|..++..++.+...+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555554444
No 375
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=86.10 E-value=4.2 Score=28.90 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=31.5
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
++.|..+...|...=..|+|++|+.+|.+|++++...
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3467778888899999999999999999999977544
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.68 E-value=16 Score=33.18 Aligned_cols=81 Identities=28% Similarity=0.178 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCchhHHHH
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFR 303 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~~~al~~~p~~~ka~~~ 303 (361)
...|+..|.++-. .....+..++|.+|.. ..++.+|..+|.+|-+... ..+.++
T Consensus 171 ~~~A~~~~~~aa~--------------------~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~ 228 (292)
T COG0790 171 DKKALYLYRKAAE--------------------LGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN 228 (292)
T ss_pred HHhHHHHHHHHHH--------------------hcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence 3478888888755 2366788999988866 4589999999999999886 999999
Q ss_pred HHHHHHhcC---------------CHHHHHHHHHHHHhhCCCC
Q 018089 304 QGQAYMALN---------------DVDAAVESFEKALKLEPND 331 (361)
Q Consensus 304 ~g~~~~~~~---------------~~~~A~~~~~~a~~l~p~~ 331 (361)
++ +++..| +...|..++.++....+..
T Consensus 229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 99 666555 8888999999888776543
No 377
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.61 E-value=1.1 Score=24.55 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.+..++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367899999999999999998775
No 378
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.57 E-value=6.1 Score=32.19 Aligned_cols=81 Identities=12% Similarity=-0.064 Sum_probs=61.4
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~ 296 (361)
+.........+.+++...... ++. +.|....+-.--+..++..|+|.+|+..+....+-.+.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdA-Lrv-----------------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDA-LRV-----------------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHH-HHH-----------------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 333344446666666655543 441 67777778888889999999999999999999999888
Q ss_pred chhHHHHHHHHHHhcCCHH
Q 018089 297 NVKALFRQGQAYMALNDVD 315 (361)
Q Consensus 297 ~~ka~~~~g~~~~~~~~~~ 315 (361)
.+-+.--++.|++.+|+.+
T Consensus 77 ~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 77 PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred chHHHHHHHHHHHhcCChH
Confidence 7777777888999998764
No 379
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.54 E-value=4.8 Score=28.68 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=30.4
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
..|..+...|...=+.|+|++|+.+|..+|+++...
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677778888889999999999999999988654
No 380
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=85.39 E-value=30 Score=32.88 Aligned_cols=86 Identities=14% Similarity=-0.019 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCchhHHHHHHHHHHh---cCCHHHHHHHHHH-HHhhCCCCHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMA---LNDVDAAVESFEK-ALKLEPNDGG 333 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p~~~ka~~~~g~~~~~---~~~~~~A~~~~~~-a~~l~p~~~~ 333 (361)
.......|+=.+|....+|+.-+...+..-.+ -++.....+..|.|+.. .|+.++|+..+.. .....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 44556678888899999999999888877766 34566777788888888 8999999999999 5556667889
Q ss_pred HHHHHHHHHHHHHH
Q 018089 334 IKKELAVAKKKIHE 347 (361)
Q Consensus 334 ~~~~l~~~~~~~~~ 347 (361)
.+-.++.+.+.+-.
T Consensus 219 ~~gL~GRIyKD~~~ 232 (374)
T PF13281_consen 219 TLGLLGRIYKDLFL 232 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 381
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.23 E-value=26 Score=35.47 Aligned_cols=114 Identities=13% Similarity=0.054 Sum_probs=81.5
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
|.-.+...-.-|=++.....|.+.|. +.--.+.+-.|.|..+..-.-+++|-+.|++.|.+-
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriid------------------LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIID------------------LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 33344444456677778888888888 555667778889988888888999999999999886
Q ss_pred CC--c---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHH
Q 018089 295 DD--N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKIH 346 (361)
Q Consensus 295 p~--~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~ 346 (361)
|- - +..|.......+.-...+.|...|++|++..|.. +.+....+.++++.+
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 42 2 3345555666666678999999999999998842 345555555555544
No 382
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.78 E-value=6.4 Score=27.92 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=31.3
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcc
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (361)
.+.|..+...|..+=+.|+|++|+.+|.+|++.+....
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34566777788888889999999999999999886543
No 383
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.73 E-value=29 Score=32.01 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--C
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD------DN--VKALFRQGQAYMALNDVDAAVESFEKALKL--E 328 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p------~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--~ 328 (361)
.......+...+|..|-+-++|..|.... .++.++. .+ ...+.++|.+|...++-.+|..+..++--+ +
T Consensus 98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 98 FEEQVASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 45667788999999999999999985543 2333332 11 346778999999999999999999887443 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018089 329 PNDGGIKKELAVAKKKIHERREQEKKQYRK 358 (361)
Q Consensus 329 p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~ 358 (361)
..|+.....+..|..+.-+++++--++.++
T Consensus 177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqr 206 (399)
T KOG1497|consen 177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQR 206 (399)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888877777765444433
No 384
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=84.62 E-value=3.1 Score=29.62 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=31.2
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
++.|..+...|...=..|+|++|+.+|..+|+++...
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3456777888888999999999999999999987644
No 385
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.57 E-value=8.7 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=24.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhh
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~ 242 (361)
.|..+...+-.+=+.|+|.+|+.+|+++++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45666667777778888888888888887754
No 386
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.43 E-value=1.8 Score=30.89 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=29.5
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhh
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~ 244 (361)
+.+..+...|...=..|+|++|+..|..|++++..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 35666777888888999999999999999997754
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.13 E-value=8 Score=27.79 Aligned_cols=58 Identities=16% Similarity=-0.001 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~k---a~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
.|.-++...+.++|+....++|+..++... ++-.+..+|...|+|++++++--+-+++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455788999999999999988776654 4445667899999999998876555544
No 388
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=16 Score=34.82 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLK------------LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKA 324 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~------------l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~--~~~~A~~~~~~a 324 (361)
.+|....+|+-+-.++.. +..+++-+.....+|..+|++.-+|+.+..++.... ++..-++.++++
T Consensus 58 ~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~ 137 (421)
T KOG0529|consen 58 KNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKA 137 (421)
T ss_pred hCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455555555555444332 234677788889999999999999999999999777 478889999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 325 LKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 325 ~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
++.||.|-.+|...+-+....+..
T Consensus 138 L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 138 LKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HhcCcccccchHHHHHHHHHHhcc
Confidence 999999988888877776666554
No 389
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.71 E-value=4 Score=42.21 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh---------------------cCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMR---------------------DGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~---------------------~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
.+|.--|+..-..|+.+.|+..|..|-. -...+--|.|.+|.-|...|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444456666678888888888887751 1223466899999999999999999988877
Q ss_pred HHhh
Q 018089 324 ALKL 327 (361)
Q Consensus 324 a~~l 327 (361)
|-.+
T Consensus 993 Aqaf 996 (1416)
T KOG3617|consen 993 AQAF 996 (1416)
T ss_pred HHHH
Confidence 6443
No 390
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=83.42 E-value=8.6 Score=27.69 Aligned_cols=41 Identities=22% Similarity=0.063 Sum_probs=32.5
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE 249 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~ 249 (361)
.+.|-...+.|-.+=..|+.+.|+.+|+++++.+......+
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566777788888888999999999999999886554433
No 391
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.34 E-value=8 Score=41.95 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=86.0
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..++.++..+.+.+++++|+..-.+|.-+.+.. .....+.....|.|++...+..++...|+..+.++
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~----------~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV----------LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechh----------ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 46677888999999999999999888876422211 01135677788999999999999999999999888
Q ss_pred hhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 291 l~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
+.+ .|.-+-...+++..+..+++++.|+.+++.|+.++
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 854 45556677888999999999999999999999865
No 392
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.92 E-value=6.2 Score=28.08 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.+..+|.-+=+.|++++|+.+|++++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455555555566655555555444
No 393
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.79 E-value=3.1 Score=42.86 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=29.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~ 243 (361)
.++.++..|+.+|++|+|++|...|-++|..++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 466778889999999999999999999998764
No 394
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.16 E-value=17 Score=38.06 Aligned_cols=123 Identities=12% Similarity=0.103 Sum_probs=76.5
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-------CCHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-------GDLK 281 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-------~~~~ 281 (361)
+.......+.|-.+...|.|.+|+++|+..|-.++-...+...+..+ .+.....+...+....+++ ...+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~ae---a~~li~i~~eYi~gL~~E~~Rr~l~~~~~~ 1064 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAE---ADELIKICREYIVGLSVELERRKLKKPNLE 1064 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHH---HHHHHHHHHHHHhhheeeeeecccCCchHH
Confidence 44556667889999999999999999999988666544433333222 3333333323333322222 2234
Q ss_pred HH--HHHHHHHhhcCCCchhHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089 282 GA--LLDTEFAMRDGDDNVKALFRQ-GQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 282 ~A--i~~~~~al~~~p~~~ka~~~~-g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 334 (361)
.+ +..|=.-..+.|-..-.-.+. -.++++++++..|...-.+.+++.|..+.+
T Consensus 1065 ~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1065 QQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 44 223333335566544333444 446889999999999999999999976654
No 395
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.04 E-value=1.2 Score=40.65 Aligned_cols=74 Identities=7% Similarity=0.047 Sum_probs=60.1
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS-ACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~l~~~~~Ai~~~~~a 290 (361)
...|...++...+.|-|.+-...|.+++. .+|.++.+|..-+ .-+...++++.|...++++
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~------------------khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g 168 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLT------------------KHPLNVDLWIYCCAFELFEIANIESSRAMFLKG 168 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence 44566667777788899999999999998 8999999987633 3356678999999999999
Q ss_pred hhcCCCchhHHHH
Q 018089 291 MRDGDDNVKALFR 303 (361)
Q Consensus 291 l~~~p~~~ka~~~ 303 (361)
|+++|++++.|+.
T Consensus 169 lR~N~~~p~iw~e 181 (435)
T COG5191 169 LRMNSRSPRIWIE 181 (435)
T ss_pred hccCCCCchHHHH
Confidence 9999999876543
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=82.01 E-value=3.7 Score=22.97 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 312 NDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 312 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
|+++.|...|++++...|.+..+|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456677777777777777777777665544
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.76 E-value=2.7 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+++|.+|+.+|+.+.|....++++.-.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 689999999999999999999999643
No 398
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=81.65 E-value=5.7 Score=28.10 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.9
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
+.|..+...|...=+.|+|++|+.+|..|++++...
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 456667778888888999999999999999977654
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.76 E-value=5 Score=32.45 Aligned_cols=50 Identities=18% Similarity=0.059 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~ 315 (361)
....+|.-.+..|+|+-|++.++.++..+|++..+..-++.++..++.-.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45677778889999999999999999999999999999999998887554
No 400
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=40 Score=31.48 Aligned_cols=123 Identities=21% Similarity=0.273 Sum_probs=82.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+.--...|-.+...++|..|..+|=+|++=+... .. ........-|.-++.+.+.+-+--.++-....++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~------~~----~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l 278 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL------DD----DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL 278 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHcccccc------CC----cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH
Confidence 3334556878888899999999999998733211 00 0122223334555555544445555677778889
Q ss_pred hcCCCchhHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMA--LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~--~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
+.+.....|.-..|.++.. +.+|+.|+..|+.-+.-| +-++..+..+...+-+
T Consensus 279 ~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~lLE 333 (411)
T KOG1463|consen 279 KYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNLLE 333 (411)
T ss_pred hccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHHHH
Confidence 9888899999999998764 569999999998877654 5566666665554443
No 401
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.37 E-value=15 Score=39.08 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=77.0
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+...|+.+|..+.|+.|.-.|... .-|..+|.+...+|+|+.|+....+|=...
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~v--------------------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV--------------------------SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 345688888888888888777654 236778889999999999999888875332
Q ss_pred CC-------------------------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 295 DD-------------------------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 295 p~-------------------------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
-. .+.-+-.+-.-|...|-|++-+..++.++-|.-.+-...-.|+.+..+.+
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 10 02223334455677889999999999999888777777777777766544
No 402
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=78.44 E-value=10 Score=38.57 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=16.6
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHH
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKA 238 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~a 238 (361)
.+++++|..+.....|.+|.++|.+.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666666666666655
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.38 E-value=31 Score=33.00 Aligned_cols=65 Identities=25% Similarity=0.122 Sum_probs=45.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--LGDLKGALLDTEF 289 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~Ai~~~~~ 289 (361)
+......+..+|++++|..|.+.+...++-++ -... ...+..++.+|.. .-++.+|.+.++.
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~---------------~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLP---------------GREE-YQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------------chhh-HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45567788899999999999999999887211 0011 3556666666554 6678888888886
Q ss_pred Hhh
Q 018089 290 AMR 292 (361)
Q Consensus 290 al~ 292 (361)
.+.
T Consensus 195 ~~~ 197 (379)
T PF09670_consen 195 LLK 197 (379)
T ss_pred HHH
Confidence 664
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.02 E-value=38 Score=32.35 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
..+.+-+-.+|+.-+.|+.|-..-.+..-- +...+..+|.+|.+..-+.+|..|.+++-.|++..|++..
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 445555667888888899887766666522 2244778889999999999999999999999999998654
No 405
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.96 E-value=8.5 Score=33.04 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHH
Q 018089 280 LKGALLDTEFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----DGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p-~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~----~~~~~~~l~~~~~~~~~~~~ 350 (361)
-+.|..-+.++=.... +.+...+.+|.-|. ..+.++|+..|.+++++.+. |+++...|+.+...+++.+.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3445554443332221 45666666665444 67778888888888887654 46777777777776665544
No 406
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.77 E-value=10 Score=36.86 Aligned_cols=84 Identities=15% Similarity=0.039 Sum_probs=49.3
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ 298 (361)
-...+..|+.-.|-.....+|+ ..|..+..-..++.....+|.|+.|..+..-+=..-....
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr------------------~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~ 357 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALR------------------NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD 357 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHH------------------hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc
Confidence 3444567777778777777777 5555566666677778888888888776544433222333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVES 320 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~ 320 (361)
++.--+-..+..++++++|...
T Consensus 358 ~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 358 STLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hHHHHHHHhhhchhhHHHHHHH
Confidence 3333333344444444444433
No 407
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.51 E-value=6.4 Score=38.35 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=54.2
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCc
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Ai~~~~~al~~~p~~ 297 (361)
.+..-+.+.|.+-...|.+++. .+|.++.+|..-|.=.+..+. .+.|...+.++|+.+|++
T Consensus 112 i~f~kk~~~~~~v~ki~~~~l~------------------~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 112 IAFCKKKKTYGEVKKIFAAMLA------------------KHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHhcchhHHHHHHHHHHH------------------hCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 3334445558888899999999 999999999988887777775 999999999999999999
Q ss_pred hhHHH
Q 018089 298 VKALF 302 (361)
Q Consensus 298 ~ka~~ 302 (361)
++.|.
T Consensus 174 p~Lw~ 178 (568)
T KOG2396|consen 174 PKLWK 178 (568)
T ss_pred hHHHH
Confidence 76543
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.42 E-value=12 Score=31.82 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 279 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
..+..++..++.++..| ++..+.+++.++..+|+.++|.+.+.++..+-|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 35556677788888888 78899999999999999999999999999999943
No 409
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=76.76 E-value=72 Score=30.53 Aligned_cols=118 Identities=17% Similarity=0.031 Sum_probs=81.0
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.-+-.+.|.+..-.|+=..|-+.-.++-.++ ....-+.++..-|+.-+--|+++.|...|+..+
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~ll----------------ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl 147 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLL----------------SSDQEPLIHLLEAQAALLEGDYEDARKKFEAML 147 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhh----------------hccchHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 3344556777777788888888777776533 122334566777888888999999999998776
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
.-....--.+-.+-..-..+|..+.|+.+-+++.+..|.-+-++...-+.....
T Consensus 148 ~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 148 DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 543333333333334456789999999999999999998876665555444433
No 410
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=76.61 E-value=1.2 Score=41.23 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=63.2
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
.+.+...++.+.|..|+..-..+++ .++....+++.++..++.+.++++|+++...+....|
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~------------------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALR------------------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred cchHHhcccccCCCcceeccccccc------------------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 3355566677777777777666666 5667778999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCH
Q 018089 296 DNVKALFRQGQAYMALNDV 314 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~ 314 (361)
++....-.+..+-....++
T Consensus 341 ~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 341 NDKAIEEELENVRQKKKQY 359 (372)
T ss_pred chHHHHHHHHHhhhHHHHH
Confidence 9877766666555554444
No 411
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.46 E-value=82 Score=31.01 Aligned_cols=102 Identities=19% Similarity=0.084 Sum_probs=74.8
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCC----
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD---GDD---- 296 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~---~p~---- 296 (361)
-.|-|++|.++-.++|...+.....+. ...-+.-.....+-+++.|.+-.|++.+|++....+... .|.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~----~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Ll 362 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADL----MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLL 362 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccc----hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHH
Confidence 467788888888888876443311111 122355567788899999999999999998876666543 333
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 297 ---NVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 297 ---~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
.+..++-+|.-....|.|+.|...|..|.++-.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE 398 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Confidence 356777888888888999999999999998753
No 412
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.80 E-value=61 Score=30.10 Aligned_cols=85 Identities=12% Similarity=-0.001 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
..-.+..+..|++||+ .+|.+..++..+=.++.+.-+-++...-.++++..+|.+...|...
T Consensus 44 ~a~~E~klsilerAL~------------------~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 44 RALAERKLSILERALK------------------HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3445677889999999 5667777777777777788889999999999999999987776655
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHhh
Q 018089 305 GQAYMA---LNDVDAAVESFEKALKL 327 (361)
Q Consensus 305 g~~~~~---~~~~~~A~~~~~~a~~l 327 (361)
-..... .-.++.....|.++++.
T Consensus 106 L~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 106 LDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 443322 33567777777777664
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.78 E-value=45 Score=29.26 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=68.5
Q ss_pred cHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh
Q 018089 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k 299 (361)
..+.+.++..+|+..-+.-++ .+|.+..+...+-..+.-.|+|++|+..|+-+-.+.|...+
T Consensus 9 seLL~~~sL~dai~~a~~qVk------------------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK------------------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh------------------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 356778889999999888888 67777778888888888999999999999999999998743
Q ss_pred ---HHHHHHHHHHh-------------c-CCHHHHHHHHHHHHhhCCC
Q 018089 300 ---ALFRQGQAYMA-------------L-NDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 300 ---a~~~~g~~~~~-------------~-~~~~~A~~~~~~a~~l~p~ 330 (361)
.|-.+-.|-.. + |...+=+..+..++.++.+
T Consensus 71 ~a~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 71 GASLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 22222222111 2 2566667777777777765
No 414
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=73.45 E-value=10 Score=33.60 Aligned_cols=54 Identities=20% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
-+.|.+.|++|+.++.... ...+|....+.+|.+..|+. +++.++|+..+++|+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L----------~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKEL----------PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHS----------CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhccc----------CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4778999999999776421 12678888888888887755 799999999888876
No 415
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=73.14 E-value=59 Score=31.00 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--LGDLKGALLDTE 288 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~Ai~~~~ 288 (361)
.....+..+|++.+|..|.+.+.++++-.. . .........+.+++.+|.. .-++++|.+.++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l--------~-----~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLL--------S-----AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccc--------C-----hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344567789999999999999999987210 0 1233456677778777765 567888888887
No 416
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.74 E-value=9.8 Score=34.57 Aligned_cols=64 Identities=6% Similarity=0.065 Sum_probs=56.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+..++..+...++++.+++..++.+. .+|.+-.+|..+=..|++.|+...|+..|.+.-
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~------------------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE------------------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 45566678888999999999999999998 889999999999999999999999999998876
Q ss_pred hc
Q 018089 292 RD 293 (361)
Q Consensus 292 ~~ 293 (361)
.+
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 54
No 417
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.12 E-value=23 Score=34.55 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...|..+|...+.+|+++-|.++++++-
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3478888888888888888888776653
No 418
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=71.87 E-value=18 Score=28.51 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHHhcCCHHHHHHHHHHHHh----h
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDD---------------NVKALFRQGQAYMALNDVDAAVESFEKALK----L 327 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~---------------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~----l 327 (361)
+.++|...++.+++-.++-.|++|+.+..+ ++-...|+|.-+..+|+-+=.+.+++-|-+ |
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999999954321 144667899999999999999999876654 5
Q ss_pred CCCC-----HHHHHHHHHHHHHHH
Q 018089 328 EPND-----GGIKKELAVAKKKIH 346 (361)
Q Consensus 328 ~p~~-----~~~~~~l~~~~~~~~ 346 (361)
-|+- ......|+-++..+-
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl 107 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALL 107 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHH
Confidence 5542 234556666555543
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.56 E-value=24 Score=34.79 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=69.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.-+...+..+...|+-+.|+..++.++. . ........++.-+|.++.-+.+|.+|-.++...
T Consensus 266 ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~---------------~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 266 GALWLLMEARILSIKGNSEAAIDMESLSIP-I---------------RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred CccHHHHHHHHHHHcccHHHHHHHHHhccc-H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344455566777777788888888888876 2 267778889999999999999999999999999
Q ss_pred hhcCCCchhHHHHH--HHHHHh--------cCCHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQ--GQAYMA--------LNDVDAAVESFEKA 324 (361)
Q Consensus 291 l~~~p~~~ka~~~~--g~~~~~--------~~~~~~A~~~~~~a 324 (361)
...+ ++++|+|.. |.|++. .++-+.|...++..
T Consensus 330 ~des-dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~ 372 (546)
T KOG3783|consen 330 RDES-DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVG 372 (546)
T ss_pred Hhhh-hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHH
Confidence 8887 566666653 344432 33445555444443
No 420
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.21 E-value=43 Score=28.48 Aligned_cols=104 Identities=18% Similarity=0.063 Sum_probs=64.9
Q ss_pred HHHHhccHHHH-----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-----C--CHH
Q 018089 214 SIKVFGNEHYK-----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----G--DLK 281 (361)
Q Consensus 214 ~~~~~G~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-----~--~~~ 281 (361)
..+..|+.++. .++...|++.|..+- +...+.+..+++.++..- . +..
T Consensus 70 SCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC--------------------~~n~~~aC~~~gLl~~~g~~~r~~dpd~~ 129 (248)
T KOG4014|consen 70 SCYKYGMYMLAGKGGDDASLSKAIRPMKIAC--------------------DANIPQACRYLGLLHWNGEKDRKADPDSE 129 (248)
T ss_pred HHHHhhhhhhcccCCCccCHHHHHHHHHHHh--------------------ccCCHHHHhhhhhhhccCcCCccCCCCcH
Confidence 34455555552 456777888887774 344566777777776532 2 267
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHh------------------------cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMA------------------------LNDVDAAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~------------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~ 337 (361)
+|.+++.++..+. +..+.+.+...|+. +.+.+.|.++--+|.+++ ++.+-.+
T Consensus 130 Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN 205 (248)
T KOG4014|consen 130 KAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACAN 205 (248)
T ss_pred HHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhh
Confidence 8899999998876 44555555544443 356778888777777774 3444444
Q ss_pred HHHH
Q 018089 338 LAVA 341 (361)
Q Consensus 338 l~~~ 341 (361)
+.++
T Consensus 206 ~SrM 209 (248)
T KOG4014|consen 206 VSRM 209 (248)
T ss_pred HHHH
Confidence 4443
No 421
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.95 E-value=18 Score=32.99 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
.+.+...+..|...|.+.+|+...++++.++|-+...++.|..+...+++
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 45666678889999999999999999999999999988888887777765
No 422
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=68.63 E-value=26 Score=33.85 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcccc------------CCCCccchhhHH----HHHHHHHHHHHHHHHhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK------------EGIDEGKSSSLR----KTKSQIFTNSSACKLKL 277 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~------------~~~~~~~~~~~~----~~~~~~~~nla~~~~~l 277 (361)
..+..|...+..++|.+|+...++||++.....+. ..++++...... --...-+..+
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~------- 105 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER------- 105 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHH-------
Confidence 45678889999999999999999999966422110 000001000000 0111112222
Q ss_pred CCHHHHHHHHHHHhhcCCCc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 278 GDLKGALLDTEFAMRDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 278 ~~~~~Ai~~~~~al~~~p~~----------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
..++..|...+.-.|.+ -..|-.+-.+|+..|++..|++.-...+-.+|++..+..++..-+.
T Consensus 106 ---a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~ 178 (471)
T KOG4459|consen 106 ---AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQT 178 (471)
T ss_pred ---HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHh
Confidence 23344454444433322 3577788889999999999999999999999999999988877653
No 423
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.46 E-value=26 Score=32.57 Aligned_cols=77 Identities=13% Similarity=0.015 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRD--GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~--~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
.+-.|+|.+..+..-...++...+-...- =..+-..+--+|..+..+|+.++|...|++++.+.++..+....+..+
T Consensus 330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34578887777766677777766655543 124556777899999999999999999999999998877665555444
No 424
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.32 E-value=56 Score=32.36 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC-CchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCH
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRD------GD-DNVKALFRQGQAYMALND-VDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~------~p-~~~ka~~~~g~~~~~~~~-~~~A~~~~~~a~~l~p~~~ 332 (361)
..-+..+|.|...+|+-..|..++..++.. ++ -.+-|+|-+|..|..++. ..+|.+++.+|-+...++.
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 344678899999999999999999888732 11 126899999999999999 9999999999998875544
No 425
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.20 E-value=46 Score=26.77 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 267 FTNSSACKL-KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 267 ~~nla~~~~-~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
|.++|.-++ ++++-++--..+.....-+..++..++.+|.+|..+|+-.+|.+.+++|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445555443 3444444334444444455567899999999999999999999999999764
No 426
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.05 E-value=44 Score=35.92 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~-------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
+.=|...|.+|.++++|++-++.+.-|++..|..+ ...||+-.+.+.. -..|....--++...|....
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 552 PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKIS 626 (932)
T ss_pred chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCccccc
Confidence 34488999999999999999999999999988775 3556666655543 34577778888888887543
No 427
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.60 E-value=76 Score=26.86 Aligned_cols=111 Identities=10% Similarity=-0.072 Sum_probs=71.0
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh-
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM- 291 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al- 291 (361)
......|.....+|+-..|+..|...-+-.+ . -....-.+.+.-|..++..|-|+....-.+..-
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~--------~------P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~ 160 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTS--------I------PQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG 160 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCC--------C------cchhhHHHHHHHHHHHhccccHHHHHHHhhhccC
Confidence 3455677888889999999999988765111 0 111222344555666677788877654443221
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.-+|-..-+.--+|.+-++.|++..|..+|..... |.+-+....+.
T Consensus 161 d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 161 DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 33455566777789999999999999999998776 43444333333
No 428
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=66.94 E-value=9.3 Score=34.20 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 277 LGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 277 l~~~~~Ai~~~~~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
--....|.+.++.||-+.... --+.++++.+|+.+.+|+.|.-+|.+|+.+--.+
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 52 DATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred ccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 345677889999999665322 2467889999999999999999999999885443
No 429
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=66.60 E-value=1.2e+02 Score=28.63 Aligned_cols=120 Identities=12% Similarity=0.024 Sum_probs=65.6
Q ss_pred HHHHhhHHHHHhccHHHHhh---------hHHHHHHHHHHHHHhhhhccccCC--CCccchhhHHHHHHHHHHHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKEG--IDEGKSSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~nla~~~~ 275 (361)
-..+.+..+++.|-.+...+ .++.|..++++|--++.+....-. ........+++....++..+..+..
T Consensus 114 l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQA 193 (346)
T cd09240 114 LGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALMLAQA 193 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34556667777776654322 268889999988877765544210 0111112245555555555544333
Q ss_pred hcCCH-----------------HHHHHHHHHHhhc----------CCCc------------hhHHHHHHHHHHhcCCHHH
Q 018089 276 KLGDL-----------------KGALLDTEFAMRD----------GDDN------------VKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 276 ~l~~~-----------------~~Ai~~~~~al~~----------~p~~------------~ka~~~~g~~~~~~~~~~~ 316 (361)
+.=-| .++...|+.|... ..++ +.++|+.|......+++-+
T Consensus 194 QE~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~Ge 273 (346)
T cd09240 194 QEVFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGE 273 (346)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence 32111 2223334444421 1111 3466777777777888888
Q ss_pred HHHHHHHHHh
Q 018089 317 AVESFEKALK 326 (361)
Q Consensus 317 A~~~~~~a~~ 326 (361)
|+..|+.|..
T Consensus 274 aIa~L~~A~~ 283 (346)
T cd09240 274 EIARLQHALE 283 (346)
T ss_pred HHHHHHHHHH
Confidence 8888887766
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.74 E-value=13 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 018089 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~ 306 (361)
|+++.|...|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788999999999999988888877664
No 431
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.66 E-value=1.1e+02 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 302 FRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 302 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
-|+|.|-.++|+..+|++.++...+--|
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 4578888888888888888888777666
No 432
>PF15469 Sec5: Exocyst complex component Sec5
Probab=65.51 E-value=13 Score=31.29 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=17.9
Q ss_pred HHHhhhHHHHHHHHHHHHHhh
Q 018089 222 HYKKQDYKMALRKYRKALRYL 242 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~ 242 (361)
+.++|+|+.|+..|.+|-.+.
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHH
Confidence 357899999999999998854
No 433
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.73 E-value=32 Score=31.12 Aligned_cols=107 Identities=12% Similarity=0.175 Sum_probs=60.1
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
-.+++.+-...|+.++|++-.+.|.+.|.|+..+-... .....+......-.+-..++-.++=-+..-.||
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN---------ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~AL 135 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN---------YSEKSINSILDYISTSKNMDLLQEFYETTLDAL 135 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999887542111 111111110000001111111222112222333
Q ss_pred hc---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 292 RD---GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 292 ~~---~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
+- +.-+.+....+|.+|+..++|..-...+++...-
T Consensus 136 kdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 136 KDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 22 2234566667999999999998777777665544
No 434
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.27 E-value=50 Score=31.91 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=68.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH------HHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL------KGAL 284 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~------~~Ai 284 (361)
.+..+.+.|..+.+...|.+|+.+.-.|=+++-.+.+.- ...-...+.+...+-.||+.+++. +.-+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~kl-------Le~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKL-------LELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHH-------HHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 466788899999999999999999888877664332110 001223334445566788887652 2223
Q ss_pred HHHHHHhh------------c-CCCch------hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 285 LDTEFAMR------------D-GDDNV------KALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 285 ~~~~~al~------------~-~p~~~------ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
.-|++.+. + .+.++ ..+.--|...+.+|+-++|.++++.+..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33333331 1 12221 2333458889999999999999988765
No 435
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=62.99 E-value=17 Score=21.39 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=17.9
Q ss_pred hHHHHHH--HHHHhcC-----CHHHHHHHHHHHHhh
Q 018089 299 KALFRQG--QAYMALN-----DVDAAVESFEKALKL 327 (361)
Q Consensus 299 ka~~~~g--~~~~~~~-----~~~~A~~~~~~a~~l 327 (361)
.|.+++| .+|..-. ++++|..+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 5667777 4433322 467788888777654
No 436
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=62.83 E-value=46 Score=33.09 Aligned_cols=83 Identities=8% Similarity=-0.085 Sum_probs=67.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 254 GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 254 ~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
++....+|.++..|+-|-.-+..+ .++++.+.|++.+..-|.++.+|--....-+..++|+.-...|.+++.--= |-+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 444567899999999887766555 999999999999999999999999999999999999999999998876432 344
Q ss_pred HHHHH
Q 018089 334 IKKEL 338 (361)
Q Consensus 334 ~~~~l 338 (361)
.|...
T Consensus 88 LW~lY 92 (656)
T KOG1914|consen 88 LWKLY 92 (656)
T ss_pred HHHHH
Confidence 55443
No 437
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.51 E-value=21 Score=20.45 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHHHHHhh
Q 018089 299 KALFRQGQAYMAL----NDVDAAVESFEKALKL 327 (361)
Q Consensus 299 ka~~~~g~~~~~~----~~~~~A~~~~~~a~~l 327 (361)
.+.+++|..|..- .+.++|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3556666665532 2667777777776554
No 438
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.19 E-value=1.3e+02 Score=32.51 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=70.5
Q ss_pred hccHHHHhhhHHHHHHHHHH------HHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 218 FGNEHYKKQDYKMALRKYRK------ALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~------al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.|+.....+-|++|...|.+ |+..+-+.. ...++...-...-..+..|..+|.+.++.+...+|++.|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i--~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENI--GSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHh--hhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 57888888889999888754 443321110 001111111122234578999999999999999999988554
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
+++..|...-.+....|.|++=+.++..|-+.
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 56777888888888999999999988877654
No 439
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=62.17 E-value=37 Score=23.88 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhCCC
Q 018089 317 AVESFEKALKLEPN 330 (361)
Q Consensus 317 A~~~~~~a~~l~p~ 330 (361)
|++.|.++++..|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 33444444445553
No 440
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=62.07 E-value=62 Score=32.24 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=58.8
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
++-|+.+|.+..+|+.+-.-+... -+++....|++.+...|..+.+|....+.+-..++.+.-+|-.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 678899999999999998877666 9999999999999999999999999988888888777766543
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.83 E-value=77 Score=24.93 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~--~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~ 325 (361)
-++....+|...|... ..+.+.+..... +.-..+.-|-.-|..+...|++++|.+.|++++
T Consensus 64 nD~RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 64 NDERYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3556666666665432 277777777765 556678888888999999999999999998864
No 442
>PF12854 PPR_1: PPR repeat
Probab=61.77 E-value=22 Score=20.70 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 297 NVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 297 ~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
+.-.|..+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344555566666677777777666654
No 443
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=61.42 E-value=62 Score=33.32 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------------hcCCCchhHHHHHHHHHHhcCCHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM----------------------RDGDDNVKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al----------------------~~~p~~~ka~~~~g~~~~~~~~~~~ 316 (361)
.+.....++.|+|..+..+..|++|.++|.+.- +.=|++++.+-.+|..+...|--++
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 345566788999999999999999998886543 1224445555555555555555555
Q ss_pred HHHHH
Q 018089 317 AVESF 321 (361)
Q Consensus 317 A~~~~ 321 (361)
|.+.|
T Consensus 871 AV~a~ 875 (1189)
T KOG2041|consen 871 AVEAY 875 (1189)
T ss_pred HHHHH
Confidence 55544
No 444
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=61.24 E-value=30 Score=35.63 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 277 l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
.++|.+|+...+..-... .-++.|-..+.-|...|+|+.|.+.|.+
T Consensus 745 akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred hhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHh
Confidence 344555544443322211 1233333455566666666666655543
No 445
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.19 E-value=19 Score=25.60 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=12.5
Q ss_pred hcCCHHHHHHHHHHHHhh
Q 018089 310 ALNDVDAAVESFEKALKL 327 (361)
Q Consensus 310 ~~~~~~~A~~~~~~a~~l 327 (361)
..|+|++|+..|..++++
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 556777777777777664
No 446
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=58.69 E-value=84 Score=30.90 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
+-+.+..+.+-.+..++-++-.-+.-.+.+.+|.+|++++++.-+.+.....+...+..|--.++
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (831)
T PRK15180 760 EHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQ 824 (831)
T ss_pred hhHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHh
Confidence 34566778888898898888888888889999999999999999988666666666666544443
No 447
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.12 E-value=1.4e+02 Score=26.85 Aligned_cols=96 Identities=7% Similarity=-0.109 Sum_probs=50.7
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC--------HHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--------LKGA 283 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--------~~~A 283 (361)
.+-+..=+..+++.+++..|.+.-.-.++..... ..+.+....-++..+...+.. ..+|
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~a 76 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------EDPVDEESIARLIELISLFPPEEPERKKFIKAA 76 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------T---SHHHHHHHHHHHHHS-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 3445555677788888888877765555544321 111122223444444444432 2344
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 018089 284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321 (361)
Q Consensus 284 i~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~ 321 (361)
+.+. +.-...--++..+..+|..+..-+++.+|...|
T Consensus 77 i~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 77 IKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4444 211112235788888899988888888887765
No 448
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=58.06 E-value=48 Score=23.78 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=37.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 307 AYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 307 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
.+.....++=|+.++.-.|.-+|+|..+.....+...+.++.+++-.+.|
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~~~Ye~~y 53 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLKKEYEKRY 53 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566668888888899999999999999988887777666554444
No 449
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.93 E-value=28 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=28.5
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
+.+.+......|...+-.|+|..|.+...++-+
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345677788899999999999999999999976
No 450
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.30 E-value=38 Score=28.58 Aligned_cols=77 Identities=9% Similarity=-0.028 Sum_probs=58.2
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~ 296 (361)
.-+-.+...|.|+.-....+..-. .-+|....+.--||...++.|++.+|..+|..... |..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~-----------------d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~ 198 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAG-----------------DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQ 198 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccC-----------------CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-ccc
Confidence 345667778888776655544322 25778888899999999999999999999998877 666
Q ss_pred chhHHHHHHHHHHhc
Q 018089 297 NVKALFRQGQAYMAL 311 (361)
Q Consensus 297 ~~ka~~~~g~~~~~~ 311 (361)
.+....+++++.+.+
T Consensus 199 aprnirqRAq~mldl 213 (221)
T COG4649 199 APRNIRQRAQIMLDL 213 (221)
T ss_pred CcHHHHHHHHHHHHH
Confidence 777888888876643
No 451
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.63 E-value=46 Score=30.68 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=29.5
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
++.|..+-..+...-+.++|.+|+.+|+.|++|+..+
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~ 43 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHA 43 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHH
Confidence 4456666667777778999999999999999988654
No 452
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=56.07 E-value=27 Score=19.70 Aligned_cols=26 Identities=19% Similarity=-0.024 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHH
Q 018089 284 LLDTEFAMRDGDDNVKALFRQGQAYM 309 (361)
Q Consensus 284 i~~~~~al~~~p~~~ka~~~~g~~~~ 309 (361)
++.+.++|..+|.+..+|..|-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45556666666666666655544443
No 453
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=54.60 E-value=2e+02 Score=27.34 Aligned_cols=119 Identities=12% Similarity=0.017 Sum_probs=64.6
Q ss_pred HHHHhhHHHHHhccHHHHhh---------hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 018089 207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
...+.+..++++|-.+...+ ..+.|..+|+.|--.+.+....-...... ..+++....++..+..+..+.
T Consensus 109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~-~Dl~~~~l~~L~~lmLAQAQE 187 (361)
T cd09239 109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGA-VDMSSQLLSFNYSLMLAQAQE 187 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-ccCCHHHHHHHHHHHHHHHHH
Confidence 55667777788877775433 37788888888876665443321111110 124555555555544433322
Q ss_pred CCHHH-----------------HHHHHHHHhhc------C---------CCc------------hhHHHHHHHHHHhcCC
Q 018089 278 GDLKG-----------------ALLDTEFAMRD------G---------DDN------------VKALFRQGQAYMALND 313 (361)
Q Consensus 278 ~~~~~-----------------Ai~~~~~al~~------~---------p~~------------~ka~~~~g~~~~~~~~ 313 (361)
=-|.+ +...|++|... + .++ +-++|+.|......++
T Consensus 188 c~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k 267 (361)
T cd09239 188 CLLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQK 267 (361)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11222 33344444432 1 111 3356777777777778
Q ss_pred HHHHHHHHHHHHh
Q 018089 314 VDAAVESFEKALK 326 (361)
Q Consensus 314 ~~~A~~~~~~a~~ 326 (361)
+-+++..|+.|..
T Consensus 268 ~Ge~Ia~L~~A~~ 280 (361)
T cd09239 268 MGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777777665
No 454
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.50 E-value=76 Score=22.59 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhCCCC
Q 018089 316 AAVESFEKALKLEPND 331 (361)
Q Consensus 316 ~A~~~~~~a~~l~p~~ 331 (361)
+|++.|..+++..|+.
T Consensus 31 ~aie~l~~~lk~e~d~ 46 (77)
T cd02683 31 EGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHhhCCCH
Confidence 3444444555556643
No 455
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.58 E-value=81 Score=33.26 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=65.9
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD- 296 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~- 296 (361)
.|.....+++++.|+..-+.++..++.. ..-....++.+.+.+.+-.|++.+|+.+-..+.++...
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~-------------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEA-------------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccc-------------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 4666778899999999999999876643 34456788999999999999999999999888876321
Q ss_pred -----chhHHHHHHHHHHhcCCH
Q 018089 297 -----NVKALFRQGQAYMALNDV 314 (361)
Q Consensus 297 -----~~ka~~~~g~~~~~~~~~ 314 (361)
..-+.+..+.++..+|+.
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHH
Confidence 245556678888888943
No 456
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=53.57 E-value=38 Score=26.15 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=40.1
Q ss_pred CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCC
Q 018089 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251 (361)
Q Consensus 202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~ 251 (361)
...+......+..+...|..++..|+.+.|.-.|.+.+.++ ...+.++.
T Consensus 28 ~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~Hpd 76 (115)
T PF08969_consen 28 NIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKHPD 76 (115)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCSCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcCcc
Confidence 34677788999999999999999999999999999999998 55554443
No 457
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.48 E-value=43 Score=30.32 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=38.6
Q ss_pred hcCCHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018089 276 KLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 276 ~l~~~~~Ai~~~~~al~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~ 325 (361)
+-.+..+|+..+++++++.+.- .+|+-.+-.+++.+++|++-...|++.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4568999999999999998754 5777778888888887776666655544
No 458
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=53.43 E-value=55 Score=31.99 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..+++|+.+.|.+.+. .-++...|-++|.+.+..|+++-|..+|+++-.
T Consensus 327 LAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 327 LALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 3456777777765542 234677999999999999999999999988643
No 459
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=52.66 E-value=45 Score=29.73 Aligned_cols=54 Identities=15% Similarity=-0.017 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
-+.|.+.|++|+.++... ....+|....+.+|.+..|+. +++.++|+....+|+
T Consensus 144 ~~~a~~aY~~A~e~a~~~----------L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHcc----------CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468899999999875431 112677778888888888776 488888887776665
No 460
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.55 E-value=46 Score=23.33 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHH
Q 018089 312 NDVDAAVESFEKA 324 (361)
Q Consensus 312 ~~~~~A~~~~~~a 324 (361)
|++++|+..|..+
T Consensus 20 g~~~~Al~~Y~~a 32 (75)
T cd02656 20 GNYEEALELYKEA 32 (75)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444433
No 461
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.40 E-value=26 Score=19.03 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 018089 268 TNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
+.+-.+|.+.|++++|.+.+++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 33444444555555555544443
No 462
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.98 E-value=79 Score=31.96 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=17.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
...|+.+|..+.+++++..|.+++.+|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34455666666666666666666666544
No 463
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=51.48 E-value=1.2e+02 Score=28.75 Aligned_cols=118 Identities=13% Similarity=-0.016 Sum_probs=66.5
Q ss_pred HHHHhhHHHHHhccHHHH---------hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 018089 207 WWMNAVDSIKVFGNEHYK---------KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~---------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
...+.+..+++.|-.+.. ...++.|..+|++|.-++.+........ ....+++....++.++..+..+.
T Consensus 102 ~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~--~s~Dl~~~~l~~l~~l~lAqAQe 179 (377)
T PF03097_consen 102 LAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDS--PSPDLSPEVLSALSNLMLAQAQE 179 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS---SSGGGSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhccc--CCCcCCHHHHHHHHHHHHHHHHH
Confidence 445566677777666654 3457889999999988887665541111 11135555566665554433322
Q ss_pred CC-----------------HHHHHHHHHHHhhc----------CCCc------------hhHHHHHHHHHHhcCCHHHHH
Q 018089 278 GD-----------------LKGALLDTEFAMRD----------GDDN------------VKALFRQGQAYMALNDVDAAV 318 (361)
Q Consensus 278 ~~-----------------~~~Ai~~~~~al~~----------~p~~------------~ka~~~~g~~~~~~~~~~~A~ 318 (361)
-- ..++...|+.|... .+.. +.++|..|......+++-+|+
T Consensus 180 ~~~~ka~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~ai 259 (377)
T PF03097_consen 180 CFYEKAIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAI 259 (377)
T ss_dssp HHHHHHHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 11 22333344444421 1111 346777777777778887777
Q ss_pred HHHHHHHh
Q 018089 319 ESFEKALK 326 (361)
Q Consensus 319 ~~~~~a~~ 326 (361)
..++.|..
T Consensus 260 a~L~~A~~ 267 (377)
T PF03097_consen 260 ARLRRAEE 267 (377)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 464
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.17 E-value=31 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 304 QGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
+|.-.-..|+|++|+.+|..++++
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 333334556666666666665543
No 465
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=50.09 E-value=1.9e+02 Score=27.31 Aligned_cols=120 Identities=9% Similarity=0.011 Sum_probs=66.8
Q ss_pred HHHHhhHHHHHhccHHHHh---------hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 018089 207 WWMNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
...+.+..+++.|-.+... ...+.|..++++|.-++.+....-.........+++....++..+..+..+.
T Consensus 101 l~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE 180 (355)
T cd09241 101 LKFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQE 180 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455666777777666432 3478899999998887766544321110111225555555555555533332
Q ss_pred CCHH-----------------HHHHHHHHHhhc---C----CCc------------hhHHHHHHHHHHhcCCHHHHHHHH
Q 018089 278 GDLK-----------------GALLDTEFAMRD---G----DDN------------VKALFRQGQAYMALNDVDAAVESF 321 (361)
Q Consensus 278 ~~~~-----------------~Ai~~~~~al~~---~----p~~------------~ka~~~~g~~~~~~~~~~~A~~~~ 321 (361)
=-|. ++...|++|+.. . +.+ +-++|+.|......+++-+++..|
T Consensus 181 ~~~~Kai~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L 260 (355)
T cd09241 181 CFWQKAISDGTKDSLIAKLAAQVSDYYQEALKYANKSDLIRSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARL 260 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1122 233444444432 1 111 346667777777777787888887
Q ss_pred HHHHh
Q 018089 322 EKALK 326 (361)
Q Consensus 322 ~~a~~ 326 (361)
+.|..
T Consensus 261 ~~A~~ 265 (355)
T cd09241 261 RVALA 265 (355)
T ss_pred HHHHH
Confidence 77766
No 466
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=50.05 E-value=2.9e+02 Score=27.92 Aligned_cols=101 Identities=9% Similarity=-0.017 Sum_probs=58.2
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..|......-.+.|+++...-.|++++-- -......|.+.+.-....|+..-|-.....+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~------------------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP------------------CALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH------------------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 44555566667888999999999988762 223344555555555555655555555555555
Q ss_pred cC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 293 DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 293 ~~-p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
+. |..+-.+.--+..-...|++..|...|++...--|+.
T Consensus 360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~ 399 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL 399 (577)
T ss_pred hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch
Confidence 43 3333333333444444556666666666665544544
No 467
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.97 E-value=1.7e+02 Score=25.26 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----chhHHHHHHHHHHhcCCHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD----NVKALFRQGQAYMALNDVDAAV 318 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~----~~ka~~~~g~~~~~~~~~~~A~ 318 (361)
.+.+.+.+|..|. ..+.++|+..+-++|++.+. ++..+..++.+++.+++++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3556666666664 77899999999999987643 4899999999999999999885
No 468
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=49.31 E-value=2.3e+02 Score=27.42 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=62.9
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC--------------
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-------------- 279 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-------------- 279 (361)
..+.+|..+|--++|+.|...|+.+.+-+.. +...-..+.++--.|.|.+.++.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~------------Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~ 277 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN------------DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPY 277 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh------------chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHH
Confidence 4677899999999999999999998872210 01122333444445555555442
Q ss_pred HHHHHHHHHHH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 280 LKGALLDTEFA----MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 280 ~~~Ai~~~~~a----l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
++.|...|.++ ......-.++....+.++...+.+.+|...+-+....
T Consensus 278 le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 278 LENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 23334444442 1122233567777778888889988887777666655
No 469
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=49.12 E-value=1.5e+02 Score=24.34 Aligned_cols=111 Identities=15% Similarity=0.059 Sum_probs=69.9
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC---C--------------CCccc----hhhHHHHHHHHHHHHHHHH
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---G--------------IDEGK----SSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---~--------------~~~~~----~~~~~~~~~~~~~nla~~~ 274 (361)
-..+......|+.++|+....+|...+....... . +.... ...............+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 4456667778999999999988888775221100 0 00000 0112334556678888889
Q ss_pred HhcCCHHHHHHHHHHHhh-cC------C-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 275 LKLGDLKGALLDTEFAMR-DG------D-DNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~-~~------p-~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
++.|+.+.|++..+.+-. ++ | .........+..+...|++.+|...+..++.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999888766541 11 1 1245667889999999999999999988864
No 470
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.67 E-value=86 Score=32.35 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=43.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..+..++|+.+..++...-.-........|.+|.++..+|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 445788998887777775444445688999999999999999999999999754
No 471
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=48.60 E-value=2.3e+02 Score=26.40 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=69.6
Q ss_pred hHHHHhhHHHHHhccHHHH----------hhhHHHHHHHHHHHHHhhhhccccCCCCcc--chhhHHHHHHHHHHHHHHH
Q 018089 206 SWWMNAVDSIKVFGNEHYK----------KQDYKMALRKYRKALRYLDICWEKEGIDEG--KSSSLRKTKSQIFTNSSAC 273 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~----------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~nla~~ 273 (361)
....+.+..+++.|-.+.. ....+.|..++++|.-++.+.......... ....+.+....++..++..
T Consensus 105 ~l~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LA 184 (345)
T cd09034 105 SLRYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLA 184 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 4555667777777666643 245788999999988877665442211111 1123555555666555544
Q ss_pred HHhcCCHH------------------HHHHHHHHHhhc----CC-------C-------------chhHHHHHHHHHHhc
Q 018089 274 KLKLGDLK------------------GALLDTEFAMRD----GD-------D-------------NVKALFRQGQAYMAL 311 (361)
Q Consensus 274 ~~~l~~~~------------------~Ai~~~~~al~~----~p-------~-------------~~ka~~~~g~~~~~~ 311 (361)
..+.--|. ++...|+.|+.. +. . .+-++|..|..+...
T Consensus 185 qAQe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~ 264 (345)
T cd09034 185 QAQECFLLKAEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEA 264 (345)
T ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33321111 333444444431 11 0 134677777777777
Q ss_pred CCHHHHHHHHHHHHhh
Q 018089 312 NDVDAAVESFEKALKL 327 (361)
Q Consensus 312 ~~~~~A~~~~~~a~~l 327 (361)
+++-+|+..++.|...
T Consensus 265 ~~~G~aia~L~~A~~~ 280 (345)
T cd09034 265 NKIGEAIARLQAALEL 280 (345)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888888888877664
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.88 E-value=2.3e+02 Score=26.01 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=40.6
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (361)
.+.+|.+.+.+++++|+..|.+.+.- -...+.. ..........+++..|...|++..-
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k---------g~s~dek-~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK---------GVSKDEK-TLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC---------CCChhhh-hhhHHHHHHHHHHHHHHhcCCcchH
Confidence 56788999999999999999998861 0001111 2223345568899999999987654
No 473
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.34 E-value=71 Score=30.12 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=47.9
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
.-..+..+...|+.++..++|+.|...|..|..+....+ -.........++..|..+++++++..++
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~----------Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY----------GEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888999999999999999999999999764331 1123345556666777777766655544
No 474
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.99 E-value=49 Score=18.27 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 301 LFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
|..+-.+|...|++++|.+.|++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455667777778888777776654
No 475
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=45.97 E-value=3.5e+02 Score=30.30 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.1
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~ 243 (361)
....+..+.+|+.+.-.|+|..|++.|..|+..++
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k 273 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILK 273 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34567788899999999999999999999999885
No 476
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=45.86 E-value=36 Score=24.21 Aligned_cols=39 Identities=21% Similarity=0.111 Sum_probs=31.4
Q ss_pred CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
.....+.++.|..+.+.|..++++|++-.|+.++.=+--
T Consensus 25 ~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~G 63 (75)
T PF04010_consen 25 YDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHG 63 (75)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445677888999999999999999999999998765543
No 477
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=45.84 E-value=2.7e+02 Score=26.37 Aligned_cols=121 Identities=13% Similarity=0.027 Sum_probs=66.8
Q ss_pred hHHHHhhHHHHHhccHHHHh------------hhHHHHHHHHHHHHHhhhhccccCCC--C--ccchhhHHHHHHHHHHH
Q 018089 206 SWWMNAVDSIKVFGNEHYKK------------QDYKMALRKYRKALRYLDICWEKEGI--D--EGKSSSLRKTKSQIFTN 269 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~------------g~y~~A~~~y~~al~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~n 269 (361)
.-..+.+..++++|..+.+. ...+.|..++++|--++.+....-.+ . .+....+.+....++.+
T Consensus 103 sl~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~ 182 (353)
T cd09243 103 DAIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYIN 182 (353)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHH
Confidence 44566677777777777421 23677778888877766554442111 1 11222355666666655
Q ss_pred HHHHHHhcCCHH-----------------HHHHHHHHHhhc----CC----Cc------------hhHHHHHHHHHHhcC
Q 018089 270 SSACKLKLGDLK-----------------GALLDTEFAMRD----GD----DN------------VKALFRQGQAYMALN 312 (361)
Q Consensus 270 la~~~~~l~~~~-----------------~Ai~~~~~al~~----~p----~~------------~ka~~~~g~~~~~~~ 312 (361)
++.+..+-=-+. ++...|++|... .+ .+ +-++|+.|..+...+
T Consensus 183 lmLAQAQE~~~~KAi~~k~k~sliaKLA~q~a~~Y~~A~~~l~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~ 262 (353)
T cd09243 183 QCTAEAQEVTVARAIELKHNAGLISALAYETAKLFQKADDSLSSLDPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKD 262 (353)
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 554433322222 233345454432 11 11 346777777777777
Q ss_pred CHHHHHHHHHHHHh
Q 018089 313 DVDAAVESFEKALK 326 (361)
Q Consensus 313 ~~~~A~~~~~~a~~ 326 (361)
++-+|+..++.|..
T Consensus 263 k~GeaIa~L~~A~~ 276 (353)
T cd09243 263 KCGEAIRSLQESEK 276 (353)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888777665
No 478
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.04 E-value=1.9e+02 Score=24.82 Aligned_cols=110 Identities=9% Similarity=0.010 Sum_probs=47.2
Q ss_pred HHHHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~ 285 (361)
+.-.....+...++.+...| .|..|...|..+|.-+..... -++....++...+.+...+..+...+.
T Consensus 13 ~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~-----------~d~~i~~~l~kF~~~l~el~~~~~~L~ 81 (200)
T cd07603 13 ELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFR-----------DDSLVQNCLNKFIQALQEMNNFHTILL 81 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555443 355566666666653322110 111222333444444433333333222
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
.=-.-+-..|-..-.---+..+-.....|+.+...|+.++..
T Consensus 82 ~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k 123 (200)
T cd07603 82 DQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211112222222222222334445556677777777777665
No 479
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.62 E-value=2.5e+02 Score=25.68 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=68.1
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
-+..++-..||..|++..+++++.+..... .++...........++.---++..++++|.+++.+..+-.....+-
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~----~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDAD----AEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 455677889999999999999985522111 1111111223333333333357788999999999888877665554
Q ss_pred hhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 298 VKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 298 ~ka~~~~g~-~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
+.-...+.. .|.+.++....++.-. +---+|+|..
T Consensus 117 PpkIleLCILLysKv~Ep~amlev~~-~WL~~p~Nq~ 152 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEPAAMLEVAS-AWLQDPSNQS 152 (309)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhCcccCC
Confidence 444444544 5777888776665443 4444676653
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.35 E-value=1.9e+02 Score=24.66 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHH
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~ 316 (361)
.-...+|++.|.|++|.+.+++... +|++.+....+..+-...+.+-.
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 3445678999999999999999999 88887775556655555444433
No 481
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=44.18 E-value=1.2e+02 Score=23.05 Aligned_cols=46 Identities=17% Similarity=0.030 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~ 312 (361)
....|...+-.|+|..|.+...++-+..+...-.+.--|.+-..+|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3444444555555555555555554444333333333344433333
No 482
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.62 E-value=31 Score=34.31 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
..+--|..+|.+|++.++|.+|+....+|
T Consensus 316 ~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 316 HHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp --SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 34445666666666777777766555444
No 483
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=42.44 E-value=53 Score=19.13 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhCC
Q 018089 314 VDAAVESFEKALKLEP 329 (361)
Q Consensus 314 ~~~A~~~~~~a~~l~p 329 (361)
++.|...|++.+...|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4445555555555444
No 484
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=42.09 E-value=1.1e+02 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 303 RQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..|.-.-..|++++|+..|.++++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444455565555555555444
No 485
>PF13041 PPR_2: PPR repeat family
Probab=42.06 E-value=86 Score=19.61 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
|+.+=..|.+.|++++|.+.+++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444455555555555555555554
No 486
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.06 E-value=1.6e+02 Score=34.80 Aligned_cols=109 Identities=12% Similarity=0.006 Sum_probs=61.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.++-|.+.|...-+.|+++.|..+.-+|.+ .. .+.++.-+|....+.|+-..|+...++.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e------------------~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKE------------------SR--LPEIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhh------------------cc--cchHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345555666666667777777766666654 22 4456677777777777777777777777
Q ss_pred hhcCCCc-----------------hhHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 291 MRDGDDN-----------------VKALFRQGQAYMALNDV--DAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 291 l~~~p~~-----------------~ka~~~~g~~~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
+..+-.+ .++.+..+.-....+++ ++-+..|..+.++.|....-...++
T Consensus 1729 l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1729 LSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 7543111 12233333333333332 3445667777777774443333333
No 487
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=41.92 E-value=28 Score=33.10 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHHHhcCC------------HHHHHHHHHHHHhh
Q 018089 296 DNVKALFRQGQAYMALND------------VDAAVESFEKALKL 327 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~------------~~~A~~~~~~a~~l 327 (361)
+.+..|.++|.++..+|+ |.+|...+.+|-+.
T Consensus 348 ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 348 DDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp --TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555443 56777777777655
No 488
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.08 E-value=2.8e+02 Score=26.00 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=65.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
..+++..+|..+.+-|+-+.|++.+.+..+-.-.. ...=.-.-+...+|..|+...-..+.++.....
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~------------g~kiDVvf~~iRlglfy~D~~lV~~~iekak~l 170 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL------------GHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSL 170 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc------------ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 46777888999999999999999988877621110 011112233466777777777778888888888
Q ss_pred hhcCCCch-----hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 291 MRDGDDNV-----KALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 291 l~~~p~~~-----ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
++..-++. |+| .|.-.+...+|.+|...|-.++.
T Consensus 171 iE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 171 IEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcc
Confidence 87765442 222 23444555677777776655543
No 489
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.72 E-value=1.3e+02 Score=21.29 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHh
Q 018089 312 NDVDAAVESFEKALK 326 (361)
Q Consensus 312 ~~~~~A~~~~~~a~~ 326 (361)
|+|++|...|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555444
No 490
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=1.7e+02 Score=30.81 Aligned_cols=61 Identities=16% Similarity=0.064 Sum_probs=41.3
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCc
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-DGDDN 297 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~-~~p~~ 297 (361)
=+.++++.-|..|+..-+.-=. -......++...|.-+++.|++++|..+|-++|. ++|..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~------------------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~ 402 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHL------------------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE 402 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH
Confidence 3456676666666655433211 2224456778888888999999999999999985 45544
No 491
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=40.18 E-value=1.7e+02 Score=25.05 Aligned_cols=49 Identities=20% Similarity=0.066 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 018089 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKL 327 (361)
Q Consensus 277 l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l 327 (361)
+++.++|.+..-+|.+++ ++.+.-+....|.. -++.++|..+=++|.++
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 466778888888888776 44444444444322 12456666665555554
No 492
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.16 E-value=1.4e+02 Score=24.13 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
....+.++..+|.+|-++|+..+|.+...+|.+..
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34567889999999999999999999888887643
No 493
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.59 E-value=68 Score=17.75 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
|..+-.++.+.|+++.|...++.-.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555666666666666555543
No 494
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.10 E-value=2.8e+02 Score=25.62 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=62.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+++++++|..|...++-+.+.+...+.++-.... .+.-.-.-+-..+|.+|-.+.-..+.++..+-.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st------------g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST------------GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc------------ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 56778888888888888888888887777622110 011111223355666666666677777777777
Q ss_pred hhcCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 291 MRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 291 l~~~p~~-----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
++..-++ .|+| .|.-.+...+|.+|...+...+.
T Consensus 182 iEkGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 182 IEKGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHhCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhc
Confidence 7765443 2333 24445556677777766655543
No 495
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=38.64 E-value=1.5e+02 Score=21.38 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 317 AVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 317 A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
++..-.++++.+|+|+.++..+.....+
T Consensus 26 ~l~~Al~~l~~~pdnP~~LA~~Qa~l~e 53 (80)
T PRK15326 26 QVTEALDKLAAKPSDPALLAAYQSKLSE 53 (80)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 3333333445555555554444444333
No 496
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.58 E-value=1.7e+02 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..|+.++|.-|.+.|+-+.|.+++.+..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45666666666666666666666555443
No 497
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.28 E-value=6.1e+02 Score=30.41 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
++.....+|.+.|.+..+.|+++.|-.+.-+|.+.. -++++.-+|..+-..|+...|+..+++.++++
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 566788999999999999999999999999998887 57889999999999999999999999999765
No 498
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.93 E-value=1.5e+02 Score=21.27 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHHHHHhh-------CC---CCHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 310 ALNDVDAAVESFEKALKL-------EP---NDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 310 ~~~~~~~A~~~~~~a~~l-------~p---~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
..|+.++|+..|+++++. .- .-...|.....++.+++.....-+.
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~ 74 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKT 74 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555443 11 1234566666666666655544433
No 499
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=37.56 E-value=2.4e+02 Score=28.45 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=42.0
Q ss_pred HHHHHHHHhhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 283 Ai~~~~~al~~-----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~------p~~~~~~~~l~~~~~~~~ 346 (361)
+++.|.+||.. +-...--|..+|-.|++.++|.+|+..+..|...- -+|.++++.+-++...+-
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneLi 372 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANELI 372 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHHH
Confidence 34445555532 23446677788889999999999999998886642 346778887777655543
No 500
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.09 E-value=1.9e+02 Score=27.31 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
...-+|+..++.++..+|.|......+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4466788899999999999999999999999999999999888754
Done!