Query 018089
Match_columns 361
No_of_seqs 324 out of 3451
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ihg_A Cyclophilin 40; ppiase 100.0 3.6E-75 1.2E-79 551.9 38.3 356 3-361 15-370 (370)
2 1a58_A Cyclophilin; isomerase, 100.0 1.6E-54 5.4E-59 363.6 20.5 171 3-173 6-176 (177)
3 2wfi_A Peptidyl-prolyl CIS-tra 100.0 2.2E-54 7.6E-59 363.0 20.8 171 3-173 9-179 (179)
4 2igv_A Peptidyl-prolyl CIS-tra 100.0 1.9E-54 6.4E-59 361.8 19.8 172 1-174 1-172 (173)
5 2he9_A NK-tumor recognition pr 100.0 4.5E-54 1.5E-58 363.9 20.7 174 1-174 17-190 (192)
6 2poy_A Peptidyl-prolyl CIS-tra 100.0 5.2E-53 1.8E-57 355.6 19.8 169 2-172 18-186 (186)
7 1qng_A Peptidyl-prolyl CIS-tra 100.0 8.1E-53 2.8E-57 350.9 18.2 169 2-173 2-170 (170)
8 2z6w_A Peptidyl-prolyl CIS-tra 100.0 1.6E-52 5.6E-57 347.4 19.4 163 1-173 1-164 (165)
9 2cmt_A Peptidyl-prolyl CIS-tra 100.0 2.7E-52 9.3E-57 347.7 19.4 163 1-173 8-171 (172)
10 2haq_A Cyclophilin; rotamase, 100.0 1.8E-52 6.2E-57 347.9 17.8 163 1-173 9-172 (172)
11 1mzw_A Cyclophilin H, U-snRNP- 100.0 3.2E-52 1.1E-56 349.2 17.8 168 3-173 10-177 (177)
12 2r99_A Peptidyl-prolyl CIS-tra 100.0 7.8E-52 2.7E-56 345.6 20.0 163 1-173 9-172 (173)
13 3pmp_A Cyclophilin A; peptidyl 100.0 8.1E-52 2.8E-56 343.6 19.3 162 2-173 1-163 (164)
14 1z81_A Cyclophilin; structural 100.0 1.7E-51 5.9E-56 355.3 18.0 168 3-173 59-229 (229)
15 3rdd_A Peptidyl-prolyl CIS-tra 100.0 5.1E-51 1.7E-55 343.7 19.2 164 1-173 20-183 (184)
16 3ich_A Peptidyl-prolyl CIS-tra 100.0 3.8E-51 1.3E-55 345.3 17.5 163 3-174 15-178 (188)
17 4fru_A Cyclophilin B, peptidyl 100.0 5.6E-51 1.9E-55 344.8 17.6 164 3-174 12-175 (185)
18 3k2c_A Peptidyl-prolyl CIS-tra 100.0 1.4E-50 4.9E-55 343.2 19.9 165 1-174 25-191 (193)
19 2c3b_A Ppiase, cyclophilin; is 100.0 3.4E-50 1.2E-54 335.4 12.3 160 5-173 4-172 (172)
20 2ose_A Probable peptidyl-proly 100.0 3.3E-49 1.1E-53 343.9 15.0 174 2-177 13-210 (234)
21 2poe_A Cyclophilin-like protei 100.0 1.1E-47 3.7E-52 323.3 14.4 160 7-179 16-180 (185)
22 2x7k_A Peptidyl-prolyl CIS-tra 100.0 2.7E-47 9.3E-52 316.0 16.2 154 3-173 11-165 (166)
23 2ok3_A Peptidyl-prolyl CIS-tra 100.0 2.5E-47 8.4E-52 315.3 15.5 152 15-178 7-160 (161)
24 2fu0_A Cyclophilin, putative; 100.0 5.5E-47 1.9E-51 312.3 16.1 153 4-173 6-159 (160)
25 2b71_A Cyclophilin-like protei 100.0 6.2E-47 2.1E-51 320.5 16.2 156 3-175 38-194 (196)
26 1zkc_A Peptidyl-prolyl CIS-tra 100.0 1.4E-46 4.7E-51 318.2 16.3 150 15-176 26-177 (197)
27 2a2n_A Peptidylprolyl isomeras 100.0 1E-46 3.6E-51 314.8 13.5 149 12-172 25-175 (176)
28 2k7n_A Peptidyl-prolyl CIS-tra 100.0 3.6E-46 1.2E-50 316.8 15.9 159 3-178 11-170 (203)
29 1w74_A Peptidyl-prolyl CIS-tra 100.0 1.1E-45 3.7E-50 312.0 17.2 161 3-172 23-190 (191)
30 3bo7_A Peptidyl-prolyl CIS-tra 100.0 6.1E-46 2.1E-50 317.5 15.8 154 15-180 13-179 (201)
31 2hq6_A Serologically defined c 100.0 2.1E-45 7.3E-50 309.0 15.4 158 3-178 24-184 (185)
32 1v9t_A Cyclophilin B; beta bar 100.0 2.6E-44 8.9E-49 299.0 13.7 153 2-173 3-165 (166)
33 3bkp_A Cyclophilin; malaria, i 100.0 5.5E-44 1.9E-48 310.3 15.2 161 3-181 21-200 (232)
34 3s6m_A Peptidyl-prolyl CIS-tra 100.0 1.9E-43 6.6E-48 294.6 13.6 153 2-173 2-167 (167)
35 1lop_A Cyclophilin A; rotamase 100.0 1.8E-43 6.1E-48 293.4 11.6 145 15-173 6-163 (164)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 1.3E-38 4.3E-43 291.9 9.0 137 3-152 170-344 (369)
37 3rkv_A Putative peptidylprolyl 99.9 1.5E-24 5.2E-29 180.0 12.9 157 205-361 4-161 (162)
38 4gco_A Protein STI-1; structur 99.9 2.4E-21 8.2E-26 154.4 13.9 116 209-342 10-125 (126)
39 2hr2_A Hypothetical protein; a 99.9 3E-21 1E-25 158.2 12.8 137 209-351 8-155 (159)
40 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 1.1E-19 3.6E-24 176.4 16.3 158 201-361 257-414 (457)
41 1p5q_A FKBP52, FK506-binding p 99.8 4.4E-19 1.5E-23 165.1 17.6 157 202-361 137-293 (336)
42 2fbn_A 70 kDa peptidylprolyl i 99.8 2.2E-19 7.7E-24 153.7 14.4 165 195-361 21-185 (198)
43 4gcn_A Protein STI-1; structur 99.8 9.9E-19 3.4E-23 139.3 11.5 115 208-341 4-125 (127)
44 2if4_A ATFKBP42; FKBP-like, al 99.8 5.2E-19 1.8E-23 164.8 10.6 163 198-361 165-327 (338)
45 3upv_A Heat shock protein STI1 99.8 3E-18 1E-22 135.4 12.0 117 211-345 3-125 (126)
46 3sz7_A HSC70 cochaperone (SGT) 99.7 1.7E-17 5.8E-22 137.5 12.6 123 210-350 9-133 (164)
47 3gyz_A Chaperone protein IPGC; 99.7 4.1E-17 1.4E-21 134.0 13.5 106 209-332 33-138 (151)
48 2xcb_A PCRH, regulatory protei 99.7 8.4E-17 2.9E-21 130.2 13.6 124 210-351 16-139 (142)
49 2vgx_A Chaperone SYCD; alterna 99.7 7.5E-17 2.6E-21 131.9 12.8 124 209-350 18-141 (148)
50 4ga2_A E3 SUMO-protein ligase 99.7 6.6E-17 2.3E-21 132.4 11.3 116 210-343 29-145 (150)
51 4ga2_A E3 SUMO-protein ligase 99.7 6.9E-17 2.4E-21 132.3 10.3 115 218-350 3-117 (150)
52 3q49_B STIP1 homology and U bo 99.7 1.2E-16 4.1E-21 127.5 10.6 122 211-350 8-134 (137)
53 3urz_A Uncharacterized protein 99.7 1.6E-15 5.5E-20 130.9 17.3 119 211-347 3-137 (208)
54 4gyw_A UDP-N-acetylglucosamine 99.7 7.2E-16 2.5E-20 156.9 14.1 124 210-351 7-130 (723)
55 1elw_A TPR1-domain of HOP; HOP 99.6 3E-15 1E-19 115.1 13.4 115 211-343 3-117 (118)
56 1a17_A Serine/threonine protei 99.6 1E-14 3.4E-19 119.7 16.5 119 206-342 7-125 (166)
57 2vyi_A SGTA protein; chaperone 99.6 6.9E-15 2.4E-19 115.1 14.0 123 207-347 7-129 (131)
58 2pl2_A Hypothetical conserved 99.6 2.1E-15 7.3E-20 131.0 11.2 122 212-351 5-137 (217)
59 4gyw_A UDP-N-acetylglucosamine 99.6 1.9E-15 6.6E-20 153.7 11.9 125 209-351 40-164 (723)
60 1hxi_A PEX5, peroxisome target 99.6 1.8E-15 6.2E-20 119.2 9.0 103 213-333 18-120 (121)
61 2lni_A Stress-induced-phosphop 99.6 4.3E-15 1.5E-19 117.1 10.9 117 211-345 15-131 (133)
62 1elr_A TPR2A-domain of HOP; HO 99.6 7.1E-15 2.4E-19 115.2 11.9 120 211-349 3-129 (131)
63 2dba_A Smooth muscle cell asso 99.6 8.9E-15 3E-19 117.6 12.6 118 211-343 27-144 (148)
64 4i17_A Hypothetical protein; T 99.6 1.6E-14 5.4E-19 125.8 13.9 122 212-351 7-136 (228)
65 1zu2_A Mitochondrial import re 99.6 4.1E-15 1.4E-19 121.5 9.1 107 222-346 12-139 (158)
66 2h6f_A Protein farnesyltransfe 99.6 5.9E-15 2E-19 139.5 11.5 119 211-347 96-215 (382)
67 3vtx_A MAMA; tetratricopeptide 99.6 2.4E-14 8.3E-19 120.2 13.7 124 211-352 4-161 (184)
68 2xev_A YBGF; tetratricopeptide 99.6 1.5E-14 5.2E-19 113.9 11.6 117 213-344 3-122 (129)
69 2pl2_A Hypothetical conserved 99.6 1.3E-14 4.5E-19 126.0 12.2 124 210-352 71-205 (217)
70 2h6f_A Protein farnesyltransfe 99.6 1.6E-14 5.4E-19 136.6 11.8 119 208-344 127-246 (382)
71 3k9i_A BH0479 protein; putativ 99.6 1.6E-14 5.3E-19 112.7 9.6 100 224-341 2-104 (117)
72 2c2l_A CHIP, carboxy terminus 99.5 3.3E-14 1.1E-18 128.7 12.5 103 211-331 3-105 (281)
73 1wao_1 Serine/threonine protei 99.5 1.2E-14 4.2E-19 141.4 9.9 118 210-345 4-121 (477)
74 1na0_A Designed protein CTPR3; 99.5 1.7E-13 5.8E-18 106.2 14.3 115 212-344 9-123 (125)
75 3gyz_A Chaperone protein IPGC; 99.5 1.6E-14 5.6E-19 118.4 8.1 95 259-353 31-125 (151)
76 3vtx_A MAMA; tetratricopeptide 99.5 1.4E-13 4.7E-18 115.5 13.1 122 211-332 38-175 (184)
77 3urz_A Uncharacterized protein 99.5 1.4E-13 4.8E-18 118.7 12.6 106 218-342 60-200 (208)
78 4i17_A Hypothetical protein; T 99.5 2.1E-13 7.2E-18 118.6 13.5 119 212-348 42-169 (228)
79 4gco_A Protein STI-1; structur 99.5 2E-13 6.8E-18 108.2 11.2 95 259-353 8-102 (126)
80 2e2e_A Formate-dependent nitri 99.5 3.6E-13 1.2E-17 112.4 13.4 116 210-343 42-160 (177)
81 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.5E-13 8.4E-18 116.5 12.4 121 211-352 5-141 (213)
82 2kck_A TPR repeat; tetratricop 99.5 1.6E-13 5.3E-18 104.5 8.7 103 212-332 6-111 (112)
83 2fo7_A Synthetic consensus TPR 99.5 9.1E-13 3.1E-17 103.1 12.8 122 213-352 2-123 (136)
84 2vsy_A XCC0866; transferase, g 99.4 5.3E-13 1.8E-17 132.4 13.7 125 209-351 20-147 (568)
85 2vgx_A Chaperone SYCD; alterna 99.4 3.9E-13 1.3E-17 109.6 9.3 94 259-352 16-109 (148)
86 4abn_A Tetratricopeptide repea 99.4 7.9E-13 2.7E-17 128.5 13.1 122 213-352 171-312 (474)
87 3uq3_A Heat shock protein STI1 99.4 9.6E-13 3.3E-17 115.4 11.9 98 213-328 140-237 (258)
88 3as5_A MAMA; tetratricopeptide 99.4 2.4E-12 8.3E-17 106.6 13.6 123 212-352 42-164 (186)
89 2pzi_A Probable serine/threoni 99.4 3.4E-13 1.2E-17 136.9 9.9 123 211-352 432-554 (681)
90 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.4E-12 1.1E-16 113.2 14.9 114 210-341 41-154 (275)
91 4abn_A Tetratricopeptide repea 99.4 1.1E-12 3.9E-17 127.4 12.4 123 211-352 101-241 (474)
92 3qky_A Outer membrane assembly 99.4 1E-12 3.5E-17 116.8 10.9 110 211-335 14-134 (261)
93 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.8E-12 9.6E-17 109.8 12.7 103 212-332 37-155 (213)
94 3ieg_A DNAJ homolog subfamily 99.4 4.6E-12 1.6E-16 116.3 14.4 122 214-349 236-357 (359)
95 3uq3_A Heat shock protein STI1 99.4 5.9E-12 2E-16 110.3 14.2 139 212-350 38-225 (258)
96 3as5_A MAMA; tetratricopeptide 99.4 2.2E-12 7.6E-17 106.8 10.8 124 211-352 7-130 (186)
97 1fch_A Peroxisomal targeting s 99.4 2E-12 6.7E-17 119.9 11.4 123 212-352 217-350 (368)
98 2pzi_A Probable serine/threoni 99.4 4.8E-13 1.6E-17 135.9 7.7 115 211-344 466-580 (681)
99 2yhc_A BAMD, UPF0169 lipoprote 99.4 7.3E-12 2.5E-16 109.0 14.3 112 212-338 4-136 (225)
100 2l6j_A TPR repeat-containing p 99.4 1.2E-13 4.2E-18 105.5 2.5 95 211-323 3-103 (111)
101 2q7f_A YRRB protein; TPR, prot 99.4 6.5E-12 2.2E-16 109.2 13.9 122 212-351 57-178 (243)
102 4eqf_A PEX5-related protein; a 99.4 2.3E-12 8E-17 119.7 11.3 123 212-352 213-347 (365)
103 2e2e_A Formate-dependent nitri 99.4 6.1E-13 2.1E-17 111.0 6.6 120 215-352 13-135 (177)
104 3qky_A Outer membrane assembly 99.4 8.8E-12 3E-16 110.7 14.4 119 212-345 52-198 (261)
105 4eqf_A PEX5-related protein; a 99.4 3E-12 1E-16 119.0 11.7 119 216-352 181-301 (365)
106 2ho1_A Type 4 fimbrial biogene 99.4 9.1E-12 3.1E-16 109.3 13.8 121 212-350 71-193 (252)
107 2xcb_A PCRH, regulatory protei 99.4 2.7E-12 9.2E-17 103.4 9.5 94 259-352 13-106 (142)
108 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.9E-16 106.1 14.0 122 212-351 42-166 (225)
109 2q7f_A YRRB protein; TPR, prot 99.4 4.7E-12 1.6E-16 110.1 11.7 123 211-351 90-212 (243)
110 2vq2_A PILW, putative fimbrial 99.4 6.6E-12 2.3E-16 107.6 12.4 125 210-352 6-133 (225)
111 1w3b_A UDP-N-acetylglucosamine 99.4 4.1E-12 1.4E-16 119.2 12.1 121 211-349 66-186 (388)
112 3qou_A Protein YBBN; thioredox 99.3 4.3E-12 1.5E-16 115.0 11.7 123 211-351 116-274 (287)
113 3u4t_A TPR repeat-containing p 99.3 2.4E-12 8.2E-17 114.3 9.7 119 214-351 5-127 (272)
114 1w3b_A UDP-N-acetylglucosamine 99.3 6.5E-12 2.2E-16 117.8 13.0 140 212-351 169-324 (388)
115 3ieg_A DNAJ homolog subfamily 99.3 6.3E-12 2.2E-16 115.4 12.2 113 211-341 2-117 (359)
116 2r5s_A Uncharacterized protein 99.3 7.2E-12 2.5E-16 104.7 11.5 121 213-351 7-163 (176)
117 2kat_A Uncharacterized protein 99.3 7.6E-12 2.6E-16 96.7 10.7 100 230-347 3-104 (115)
118 1xnf_A Lipoprotein NLPI; TPR, 99.3 9.7E-12 3.3E-16 110.2 12.3 122 217-352 10-131 (275)
119 1qqe_A Vesicular transport pro 99.3 1.4E-11 4.7E-16 111.8 13.3 129 211-351 76-218 (292)
120 3upv_A Heat shock protein STI1 99.3 1.5E-11 5.2E-16 96.4 11.9 91 262-352 2-92 (126)
121 3cv0_A Peroxisome targeting si 99.3 9E-12 3.1E-16 113.1 12.1 124 211-352 171-306 (327)
122 3u4t_A TPR repeat-containing p 99.3 1.5E-11 5.1E-16 109.1 13.0 118 212-347 74-191 (272)
123 2ho1_A Type 4 fimbrial biogene 99.3 7.8E-12 2.7E-16 109.7 11.1 124 211-352 36-161 (252)
124 3edt_B KLC 2, kinesin light ch 99.3 2E-11 6.7E-16 108.2 13.4 133 210-352 41-189 (283)
125 2y4t_A DNAJ homolog subfamily 99.3 2.6E-11 8.8E-16 115.6 15.0 118 216-347 261-378 (450)
126 2gw1_A Mitochondrial precursor 99.3 1.8E-11 6.3E-16 118.3 13.6 107 209-334 3-109 (514)
127 2y4t_A DNAJ homolog subfamily 99.3 3.5E-11 1.2E-15 114.6 15.2 115 209-341 23-140 (450)
128 4gcn_A Protein STI-1; structur 99.3 1.2E-11 4.3E-16 97.8 9.9 92 260-351 4-102 (127)
129 3hym_B Cell division cycle pro 99.3 1.5E-11 5.3E-16 111.7 11.7 124 211-352 89-213 (330)
130 3hym_B Cell division cycle pro 99.3 1.6E-11 5.5E-16 111.5 11.8 119 215-351 162-289 (330)
131 3mkr_A Coatomer subunit epsilo 99.3 2.5E-11 8.7E-16 110.2 12.8 117 212-346 130-248 (291)
132 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.1E-11 7.3E-16 106.0 11.6 126 212-352 41-204 (225)
133 1hxi_A PEX5, peroxisome target 99.3 6.4E-11 2.2E-15 92.8 13.2 88 266-353 19-106 (121)
134 2fo7_A Synthetic consensus TPR 99.3 4E-11 1.4E-15 93.5 11.7 102 212-331 35-136 (136)
135 1fch_A Peroxisomal targeting s 99.3 3.7E-11 1.3E-15 111.2 13.4 117 217-352 187-305 (368)
136 1na3_A Designed protein CTPR2; 99.3 8.4E-11 2.9E-15 86.1 12.0 83 262-344 7-89 (91)
137 2l6j_A TPR repeat-containing p 99.2 9.1E-11 3.1E-15 89.2 12.0 84 263-346 3-92 (111)
138 4g1t_A Interferon-induced prot 99.2 6E-11 2.1E-15 114.0 13.4 127 211-346 50-186 (472)
139 3sz7_A HSC70 cochaperone (SGT) 99.2 8E-11 2.7E-15 96.9 12.2 93 261-353 8-100 (164)
140 1qqe_A Vesicular transport pro 99.2 4.9E-11 1.7E-15 108.1 11.8 131 210-352 35-178 (292)
141 2vsy_A XCC0866; transferase, g 99.2 4.1E-11 1.4E-15 118.8 11.4 110 225-352 2-111 (568)
142 2hr2_A Hypothetical protein; a 99.2 6.4E-11 2.2E-15 96.8 10.4 91 262-352 9-122 (159)
143 3edt_B KLC 2, kinesin light ch 99.2 9.8E-11 3.3E-15 103.6 12.1 109 209-327 82-198 (283)
144 3ma5_A Tetratricopeptide repea 99.2 7.8E-11 2.7E-15 89.0 9.7 83 259-341 2-86 (100)
145 1p5q_A FKBP52, FK506-binding p 99.2 1.6E-11 5.6E-16 113.8 7.1 110 225-352 126-250 (336)
146 3mkr_A Coatomer subunit epsilo 99.2 1.1E-10 3.8E-15 105.9 12.5 97 223-337 177-274 (291)
147 3fp2_A TPR repeat-containing p 99.2 6.6E-11 2.3E-15 115.3 11.6 143 209-351 240-397 (537)
148 3cv0_A Peroxisome targeting si 99.2 1E-10 3.6E-15 106.0 11.9 114 221-352 147-260 (327)
149 3fp2_A TPR repeat-containing p 99.2 1.5E-10 5.1E-15 112.7 13.5 126 215-352 239-364 (537)
150 3ulq_A Response regulator aspa 99.2 1.7E-10 5.8E-15 108.2 13.1 133 209-352 140-284 (383)
151 3ro3_A PINS homolog, G-protein 99.2 2.9E-10 1E-14 91.6 12.7 132 209-352 6-149 (164)
152 3n71_A Histone lysine methyltr 99.2 3.1E-10 1.1E-14 110.2 14.7 141 205-355 302-458 (490)
153 3q49_B STIP1 homology and U bo 99.2 1.8E-10 6.1E-15 91.2 10.6 94 259-352 4-97 (137)
154 2kc7_A BFR218_protein; tetratr 99.2 1.8E-11 6.1E-16 91.7 4.4 89 217-331 5-94 (99)
155 2xpi_A Anaphase-promoting comp 99.2 2.3E-10 7.8E-15 113.2 13.7 123 211-351 372-494 (597)
156 1na3_A Designed protein CTPR2; 99.2 1.5E-10 5.1E-15 84.7 9.0 84 211-312 8-91 (91)
157 3nf1_A KLC 1, kinesin light ch 99.1 3.4E-10 1.2E-14 101.8 12.7 135 209-353 108-299 (311)
158 3nf1_A KLC 1, kinesin light ch 99.1 3.5E-10 1.2E-14 101.7 12.6 133 210-352 67-215 (311)
159 2gw1_A Mitochondrial precursor 99.1 2.5E-10 8.5E-15 110.3 12.2 115 212-344 372-495 (514)
160 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 4.4E-11 1.5E-15 115.6 6.6 111 224-352 246-371 (457)
161 2xpi_A Anaphase-promoting comp 99.1 3.8E-10 1.3E-14 111.6 13.4 140 212-351 407-569 (597)
162 2fbn_A 70 kDa peptidylprolyl i 99.1 2.4E-10 8.1E-15 97.1 9.6 113 222-352 14-142 (198)
163 3u3w_A Transcriptional activat 99.1 3.1E-10 1.1E-14 102.7 10.4 107 211-328 154-267 (293)
164 2ifu_A Gamma-SNAP; membrane fu 99.1 5E-10 1.7E-14 102.2 11.5 108 211-332 115-228 (307)
165 2kck_A TPR repeat; tetratricop 99.1 6.2E-11 2.1E-15 89.8 4.6 90 263-352 5-97 (112)
166 2ifu_A Gamma-SNAP; membrane fu 99.1 2.5E-10 8.6E-15 104.1 9.5 128 211-351 75-214 (307)
167 2lni_A Stress-induced-phosphop 99.1 7.5E-10 2.6E-14 86.5 10.8 93 260-352 12-104 (133)
168 1dce_A Protein (RAB geranylger 99.1 1.1E-09 3.6E-14 108.7 14.3 119 209-345 60-191 (567)
169 3gw4_A Uncharacterized protein 99.1 7.2E-10 2.5E-14 93.5 11.3 129 211-351 25-166 (203)
170 3q15_A PSP28, response regulat 99.1 6.9E-10 2.3E-14 104.0 12.3 133 209-352 138-281 (378)
171 3q15_A PSP28, response regulat 99.1 1.3E-09 4.4E-14 102.2 13.8 109 210-330 180-293 (378)
172 3rkv_A Putative peptidylprolyl 99.1 7E-10 2.4E-14 91.0 10.7 92 262-353 9-118 (162)
173 3ulq_A Response regulator aspa 99.1 1.1E-09 3.9E-14 102.5 13.3 109 209-329 181-295 (383)
174 2kc7_A BFR218_protein; tetratr 99.1 1E-09 3.6E-14 81.9 10.5 69 267-335 3-72 (99)
175 3u3w_A Transcriptional activat 99.1 4.7E-10 1.6E-14 101.5 10.2 124 212-347 115-251 (293)
176 1a17_A Serine/threonine protei 99.1 5.5E-10 1.9E-14 91.0 9.6 99 211-327 46-146 (166)
177 2ond_A Cleavage stimulation fa 99.1 4.5E-10 1.5E-14 102.4 9.7 118 212-347 99-218 (308)
178 2qfc_A PLCR protein; TPR, HTH, 99.1 7.4E-10 2.5E-14 100.2 10.9 128 212-351 115-255 (293)
179 4a1s_A PINS, partner of inscut 99.1 5.2E-10 1.8E-14 105.3 10.2 124 210-347 46-181 (411)
180 1elw_A TPR1-domain of HOP; HOP 99.0 1.9E-09 6.6E-14 82.0 11.6 90 263-352 3-92 (118)
181 1pc2_A Mitochondria fission pr 99.0 1.2E-09 4E-14 88.3 10.2 105 225-347 11-120 (152)
182 2vyi_A SGTA protein; chaperone 99.0 4.2E-09 1.4E-13 81.6 12.9 94 259-352 7-100 (131)
183 1ouv_A Conserved hypothetical 99.0 3E-09 1E-13 94.7 13.5 109 212-344 6-122 (273)
184 3sf4_A G-protein-signaling mod 99.0 1.5E-09 5E-14 101.4 11.0 129 211-351 186-326 (406)
185 2xev_A YBGF; tetratricopeptide 99.0 3.4E-09 1.2E-13 82.7 11.3 87 266-352 4-96 (129)
186 2if4_A ATFKBP42; FKBP-like, al 99.0 2.4E-10 8.3E-15 106.0 5.2 103 214-334 232-335 (338)
187 2dba_A Smooth muscle cell asso 99.0 3.2E-09 1.1E-13 84.6 11.2 94 259-352 23-119 (148)
188 3ro2_A PINS homolog, G-protein 99.0 1.6E-09 5.6E-14 97.8 10.4 122 212-347 5-138 (338)
189 2qfc_A PLCR protein; TPR, HTH, 99.0 1.8E-08 6E-13 91.0 17.1 132 209-352 72-216 (293)
190 2ond_A Cleavage stimulation fa 99.0 5.8E-09 2E-13 95.0 13.5 105 229-351 33-153 (308)
191 3qww_A SET and MYND domain-con 99.0 5.9E-09 2E-13 99.7 14.1 125 207-341 293-430 (433)
192 3sf4_A G-protein-signaling mod 99.0 2.9E-09 9.8E-14 99.4 11.5 129 211-351 126-286 (406)
193 3dra_A Protein farnesyltransfe 99.0 1.4E-09 4.8E-14 99.2 9.1 122 208-347 99-235 (306)
194 4a1s_A PINS, partner of inscut 99.0 2.5E-09 8.4E-14 100.6 11.1 131 209-351 163-322 (411)
195 1wao_1 Serine/threonine protei 99.0 1.7E-10 5.9E-15 112.1 3.0 104 210-331 38-154 (477)
196 3ro3_A PINS homolog, G-protein 99.0 4.5E-09 1.5E-13 84.4 10.9 108 211-330 48-161 (164)
197 1ouv_A Conserved hypothetical 99.0 5.8E-09 2E-13 92.7 12.7 109 212-344 38-158 (273)
198 1na0_A Designed protein CTPR3; 99.0 5.9E-09 2E-13 80.0 11.0 90 263-352 8-97 (125)
199 4g1t_A Interferon-induced prot 98.9 2E-09 6.7E-14 103.3 9.8 124 211-344 93-221 (472)
200 3rjv_A Putative SEL1 repeat pr 98.9 6.2E-09 2.1E-13 89.6 12.0 134 210-344 16-174 (212)
201 3dss_A Geranylgeranyl transfer 98.9 1.8E-08 6.2E-13 92.6 15.6 117 211-345 63-192 (331)
202 3ro2_A PINS homolog, G-protein 98.9 2.6E-09 8.8E-14 96.5 9.8 130 211-352 182-323 (338)
203 2c2l_A CHIP, carboxy terminus 98.9 3.1E-09 1E-13 95.8 10.2 91 263-353 3-93 (281)
204 1elr_A TPR2A-domain of HOP; HO 98.9 4E-09 1.4E-13 81.8 9.5 90 263-352 3-99 (131)
205 4f3v_A ESX-1 secretion system 98.9 7.5E-09 2.6E-13 92.7 12.2 108 214-339 137-248 (282)
206 3dra_A Protein farnesyltransfe 98.9 6.1E-09 2.1E-13 95.0 11.2 121 209-347 64-195 (306)
207 3rjv_A Putative SEL1 repeat pr 98.9 3.3E-09 1.1E-13 91.3 8.9 111 218-344 17-137 (212)
208 1dce_A Protein (RAB geranylger 98.9 8.4E-09 2.9E-13 102.2 12.9 111 218-346 34-157 (567)
209 1zu2_A Mitochondrial import re 98.9 1.4E-09 4.7E-14 88.7 5.4 76 205-298 29-125 (158)
210 3qwp_A SET and MYND domain-con 98.9 2.4E-08 8E-13 95.5 14.4 124 212-345 287-423 (429)
211 2v5f_A Prolyl 4-hydroxylase su 98.9 1.8E-08 6.3E-13 76.5 11.0 84 264-347 5-95 (104)
212 3q7a_A Farnesyltransferase alp 98.9 3E-08 1E-12 91.7 14.3 113 219-349 61-176 (349)
213 3k9i_A BH0479 protein; putativ 98.8 4.3E-09 1.5E-13 81.4 6.7 76 209-302 24-99 (117)
214 2r5s_A Uncharacterized protein 98.8 1.4E-08 4.9E-13 84.3 10.3 121 206-326 34-172 (176)
215 1ihg_A Cyclophilin 40; ppiase 98.8 7.2E-09 2.5E-13 97.3 8.6 93 210-320 271-363 (370)
216 3dss_A Geranylgeranyl transfer 98.8 3E-08 1E-12 91.1 12.5 116 209-342 105-237 (331)
217 3gw4_A Uncharacterized protein 98.8 2.2E-08 7.5E-13 84.3 10.8 109 210-329 64-178 (203)
218 3q7a_A Farnesyltransferase alp 98.8 1.8E-08 6.3E-13 93.0 9.3 120 209-346 85-215 (349)
219 4f3v_A ESX-1 secretion system 98.8 2.8E-08 9.7E-13 89.0 10.0 119 214-351 104-227 (282)
220 2v5f_A Prolyl 4-hydroxylase su 98.8 4.4E-08 1.5E-12 74.3 9.5 83 212-305 5-87 (104)
221 3bee_A Putative YFRE protein; 98.7 5E-08 1.7E-12 72.5 9.3 73 261-333 3-78 (93)
222 3ma5_A Tetratricopeptide repea 98.7 9.8E-09 3.3E-13 77.2 5.5 69 211-297 6-74 (100)
223 1hz4_A MALT regulatory protein 98.7 1.8E-07 6.2E-12 86.8 14.5 129 211-351 52-193 (373)
224 3qou_A Protein YBBN; thioredox 98.7 3.1E-08 1.1E-12 89.4 8.5 117 210-326 149-283 (287)
225 2ooe_A Cleavage stimulation fa 98.7 5E-08 1.7E-12 95.6 9.1 120 211-348 320-441 (530)
226 1klx_A Cysteine rich protein B 98.6 2E-07 7E-12 74.4 10.9 98 218-339 31-136 (138)
227 1nzn_A CGI-135 protein, fissio 98.6 3.9E-07 1.3E-11 70.8 11.7 106 224-347 13-123 (126)
228 3n71_A Histone lysine methyltr 98.6 6.7E-08 2.3E-12 93.8 8.7 117 209-335 348-472 (490)
229 2kat_A Uncharacterized protein 98.6 1.6E-07 5.5E-12 71.9 8.7 72 281-352 2-73 (115)
230 2xm6_A Protein corresponding t 98.6 2.4E-07 8.2E-12 89.8 11.9 108 214-343 330-451 (490)
231 2ooe_A Cleavage stimulation fa 98.6 5.6E-07 1.9E-11 88.1 14.7 105 229-351 255-375 (530)
232 1hz4_A MALT regulatory protein 98.5 5.5E-07 1.9E-11 83.6 12.4 131 209-352 11-155 (373)
233 1klx_A Cysteine rich protein B 98.4 1.3E-06 4.4E-11 69.7 10.0 94 225-344 8-105 (138)
234 3e4b_A ALGK; tetratricopeptide 98.4 1.6E-06 5.5E-11 83.3 11.7 109 212-343 176-294 (452)
235 2xm6_A Protein corresponding t 98.4 3.1E-06 1.1E-10 81.9 13.4 109 211-343 74-194 (490)
236 3u64_A Protein TP_0956; tetrat 98.3 2.4E-06 8.2E-11 76.0 10.3 90 224-331 175-273 (301)
237 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4E-10 75.9 14.9 119 211-329 54-206 (434)
238 1pc2_A Mitochondria fission pr 98.2 5.5E-06 1.9E-10 66.7 9.3 79 211-307 31-114 (152)
239 3e4b_A ALGK; tetratricopeptide 98.2 8E-06 2.7E-10 78.4 12.0 107 210-342 246-364 (452)
240 4b4t_Q 26S proteasome regulato 98.2 5.4E-06 1.8E-10 78.2 10.2 138 213-351 5-154 (434)
241 1xi4_A Clathrin heavy chain; a 98.2 8E-06 2.7E-10 86.7 11.9 108 213-346 1196-1328(1630)
242 1b89_A Protein (clathrin heavy 98.1 8.7E-06 3E-10 77.2 9.8 115 205-346 141-255 (449)
243 3o48_A Mitochondria fission 1 98.1 4.3E-05 1.5E-09 59.5 11.8 85 263-347 39-127 (134)
244 3mv2_B Coatomer subunit epsilo 98.1 1.9E-05 6.5E-10 71.5 11.1 121 214-353 102-232 (310)
245 1y8m_A FIS1; mitochondria, unk 98.1 5.8E-05 2E-09 59.5 12.0 84 263-346 38-125 (144)
246 3ly7_A Transcriptional activat 98.1 2.8E-05 9.6E-10 71.8 11.7 120 212-332 196-344 (372)
247 3bee_A Putative YFRE protein; 97.9 1.5E-05 5.1E-10 58.9 6.0 69 211-297 5-76 (93)
248 3qwp_A SET and MYND domain-con 97.9 1.7E-05 6E-10 75.6 7.9 93 209-311 326-426 (429)
249 1xi4_A Clathrin heavy chain; a 97.9 7.5E-05 2.6E-09 79.4 12.8 110 216-330 1053-1166(1630)
250 3mv2_B Coatomer subunit epsilo 97.9 7.3E-05 2.5E-09 67.7 11.2 112 212-344 136-267 (310)
251 3u64_A Protein TP_0956; tetrat 97.9 7.3E-05 2.5E-09 66.5 10.4 139 206-344 67-251 (301)
252 3ffl_A Anaphase-promoting comp 97.9 0.00012 3.9E-09 59.5 10.6 119 213-341 21-164 (167)
253 3qww_A SET and MYND domain-con 97.8 3.3E-05 1.1E-09 73.7 7.7 75 209-293 337-411 (433)
254 3ly7_A Transcriptional activat 97.8 7.5E-05 2.6E-09 69.0 8.8 44 259-304 306-349 (372)
255 1b89_A Protein (clathrin heavy 97.6 0.00012 4.1E-09 69.4 8.3 102 214-350 124-225 (449)
256 1nzn_A CGI-135 protein, fissio 97.4 0.00068 2.3E-08 52.5 8.1 77 212-306 35-116 (126)
257 2ff4_A Probable regulatory pro 97.3 0.0033 1.1E-07 58.9 13.6 115 212-326 115-233 (388)
258 3ffl_A Anaphase-promoting comp 97.3 0.00088 3E-08 54.3 7.9 97 211-308 62-165 (167)
259 3o48_A Mitochondria fission 1 97.2 0.0024 8.1E-08 49.7 9.7 77 213-307 41-121 (134)
260 1y8m_A FIS1; mitochondria, unk 97.0 0.0047 1.6E-07 48.6 9.3 76 213-306 40-119 (144)
261 4h7y_A Dual specificity protei 96.9 0.016 5.6E-07 46.0 11.8 95 229-334 36-130 (161)
262 4e6h_A MRNA 3'-END-processing 96.8 0.0053 1.8E-07 61.8 10.8 103 228-348 325-450 (679)
263 4e6h_A MRNA 3'-END-processing 96.8 0.0041 1.4E-07 62.6 9.7 116 214-346 436-555 (679)
264 4gns_B Protein CSD3, chitin bi 96.8 0.0065 2.2E-07 61.4 11.1 65 260-324 333-397 (754)
265 1ya0_A SMG-7 transcript varian 95.8 0.056 1.9E-06 52.1 10.9 83 263-345 151-233 (497)
266 1zbp_A Hypothetical protein VP 95.7 0.082 2.8E-06 46.3 10.6 69 273-341 6-74 (273)
267 3txn_A 26S proteasome regulato 95.4 0.091 3.1E-06 49.0 10.5 99 217-327 104-210 (394)
268 2uy1_A Cleavage stimulation fa 95.0 0.18 6.1E-06 48.6 11.6 133 212-346 213-368 (493)
269 4b4t_R RPN7, 26S proteasome re 94.8 0.084 2.9E-06 50.0 8.5 101 214-329 133-239 (429)
270 4gns_B Protein CSD3, chitin bi 94.7 0.035 1.2E-06 56.1 5.9 60 213-290 338-397 (754)
271 3kae_A CDC27, possible protein 94.7 0.43 1.5E-05 38.7 11.0 95 218-335 39-151 (242)
272 1zbp_A Hypothetical protein VP 94.7 0.15 5.3E-06 44.5 9.1 63 220-300 5-67 (273)
273 2uy1_A Cleavage stimulation fa 94.1 0.25 8.7E-06 47.5 10.4 112 213-347 287-399 (493)
274 4g26_A Pentatricopeptide repea 93.1 0.79 2.7E-05 44.1 11.8 107 225-349 83-192 (501)
275 4g26_A Pentatricopeptide repea 92.5 0.74 2.5E-05 44.3 10.8 101 213-330 106-209 (501)
276 2ff4_A Probable regulatory pro 91.6 2.3 7.7E-05 39.4 12.6 87 265-351 116-224 (388)
277 3txn_A 26S proteasome regulato 91.1 4.5 0.00015 37.5 13.9 137 211-347 18-191 (394)
278 2v6y_A AAA family ATPase, P60 91.0 0.94 3.2E-05 32.0 7.1 38 208-245 7-44 (83)
279 1ya0_A SMG-7 transcript varian 90.5 0.6 2.1E-05 44.9 7.6 81 212-310 152-232 (497)
280 2w2u_A Hypothetical P60 katani 90.4 0.99 3.4E-05 31.9 6.8 40 206-245 13-52 (83)
281 3mkq_B Coatomer subunit alpha; 90.3 2.3 7.7E-05 34.7 9.8 29 212-240 34-62 (177)
282 3mkr_B Coatomer subunit alpha; 89.9 9.2 0.00032 34.1 14.2 113 215-330 105-230 (320)
283 3mkq_A Coatomer beta'-subunit; 89.3 1.1 3.9E-05 45.0 9.1 26 265-290 682-707 (814)
284 3mv2_A Coatomer subunit alpha; 88.4 8.2 0.00028 34.5 12.7 116 214-332 116-241 (325)
285 4b4t_P 26S proteasome regulato 88.2 6.9 0.00023 36.9 13.1 105 211-327 136-247 (445)
286 3mkq_A Coatomer beta'-subunit; 88.1 1.4 4.6E-05 44.5 8.7 17 307-323 745-761 (814)
287 3lpz_A GET4 (YOR164C homolog); 87.2 10 0.00034 34.3 12.7 102 207-321 30-159 (336)
288 2cpt_A SKD1 protein, vacuolar 87.0 2.4 8.1E-05 32.0 7.2 39 207-245 13-51 (117)
289 4h7y_A Dual specificity protei 86.0 1.7 6E-05 34.4 6.2 91 259-350 8-112 (161)
290 1wfd_A Hypothetical protein 15 83.8 2.8 9.7E-05 30.2 6.1 39 207-245 10-48 (93)
291 2crb_A Nuclear receptor bindin 83.6 1.3 4.6E-05 31.6 4.0 36 210-245 13-48 (97)
292 4fhn_B Nucleoporin NUP120; pro 83.4 5.2 0.00018 42.6 10.5 106 215-324 845-964 (1139)
293 2v6x_A Vacuolar protein sortin 82.7 3.3 0.00011 29.2 6.0 38 208-245 9-46 (85)
294 2wb7_A PT26-6P; extra chromoso 82.5 5.9 0.0002 37.4 9.1 32 280-311 455-487 (526)
295 3mkq_B Coatomer subunit alpha; 82.0 13 0.00046 30.1 10.1 48 273-325 14-61 (177)
296 3kae_A CDC27, possible protein 81.7 20 0.00067 29.1 11.3 82 265-351 34-133 (242)
297 4b4t_S RPN3, 26S proteasome re 81.5 3.8 0.00013 39.3 7.7 70 263-332 230-304 (523)
298 2wpv_A GET4, UPF0363 protein Y 80.2 26 0.00088 31.2 12.3 26 297-322 133-158 (312)
299 2dl1_A Spartin; SPG20, MIT, st 78.7 9.7 0.00033 28.5 7.5 79 205-283 15-97 (116)
300 4b4t_R RPN7, 26S proteasome re 78.6 2.8 9.5E-05 39.4 5.8 75 266-340 133-212 (429)
301 4b4t_P 26S proteasome regulato 78.3 20 0.00067 33.7 11.6 88 263-350 136-232 (445)
302 4a5x_A MITD1, MIT domain-conta 77.9 3.9 0.00013 29.0 5.0 35 211-245 15-49 (86)
303 3spa_A Mtrpol, DNA-directed RN 77.4 19 0.00067 37.6 11.8 101 213-327 128-230 (1134)
304 1qsa_A Protein (soluble lytic 77.3 5.1 0.00017 39.6 7.4 54 273-326 294-347 (618)
305 3kop_A Uncharacterized protein 74.1 3.2 0.00011 33.6 4.0 33 6-40 22-55 (188)
306 2nnz_A Hypothetical protein; b 71.8 2.9 0.0001 33.2 3.3 105 8-150 32-142 (153)
307 1wy6_A Hypothetical protein ST 71.5 21 0.00072 27.9 7.9 69 267-337 93-162 (172)
308 3t5v_B Nuclear mRNA export pro 69.5 43 0.0015 31.5 11.4 104 225-331 139-254 (455)
309 2vkj_A TM1634; membrane protei 69.2 9.8 0.00033 26.9 5.0 31 210-240 51-81 (106)
310 2crb_A Nuclear receptor bindin 67.4 8.5 0.00029 27.4 4.5 24 266-289 17-40 (97)
311 3spa_A Mtrpol, DNA-directed RN 64.3 53 0.0018 34.5 11.5 94 265-359 128-227 (1134)
312 3r9m_A BRO1 domain-containing 62.7 46 0.0016 30.4 10.0 122 206-327 108-282 (376)
313 2dl1_A Spartin; SPG20, MIT, st 61.3 14 0.00047 27.6 4.9 64 280-351 19-86 (116)
314 4b4t_S RPN3, 26S proteasome re 59.7 14 0.00048 35.4 6.0 74 211-297 230-303 (523)
315 3ax2_A Mitochondrial import re 59.4 29 0.00098 23.6 5.9 29 304-332 23-51 (73)
316 2o8p_A 14-3-3 domain containin 57.3 28 0.00096 29.4 6.8 59 224-292 137-196 (227)
317 2cfu_A SDSA1; SDS-hydrolase, l 55.1 31 0.0011 34.2 7.9 52 298-349 449-500 (658)
318 2br9_A 14-3-3E, 14-3-3 protein 54.9 26 0.00089 29.7 6.3 53 229-291 147-200 (234)
319 3t5x_A PCI domain-containing p 53.2 35 0.0012 28.1 6.8 39 261-299 11-49 (203)
320 2v6y_A AAA family ATPase, P60 53.2 22 0.00074 24.8 4.7 14 317-330 37-50 (83)
321 4fhn_B Nucleoporin NUP120; pro 52.0 23 0.0008 37.5 6.9 66 266-331 844-932 (1139)
322 4gq2_M Nucleoporin NUP120; bet 51.9 44 0.0015 34.7 8.7 68 266-333 842-933 (950)
323 2ijq_A Hypothetical protein; s 51.9 82 0.0028 24.9 8.4 70 213-292 33-103 (161)
324 2npm_A 14-3-3 domain containin 51.5 33 0.0011 29.6 6.5 52 229-291 173-225 (260)
325 2xze_A STAM-binding protein; h 49.6 31 0.0011 26.9 5.5 48 203-250 31-78 (146)
326 4gq2_M Nucleoporin NUP120; bet 49.5 41 0.0014 34.9 8.0 95 215-312 843-950 (950)
327 1o9d_A 14-3-3-like protein C; 49.4 35 0.0012 29.5 6.3 53 229-291 152-205 (260)
328 3ubw_A 14-3-3E, 14-3-3 protein 49.1 36 0.0012 29.3 6.3 53 229-291 173-226 (261)
329 3re2_A Predicted protein; meni 49.1 1.1E+02 0.0039 27.8 9.5 64 283-346 276-350 (472)
330 1om2_A Protein (mitochondrial 49.0 35 0.0012 24.5 5.2 39 205-243 13-51 (95)
331 3uzd_A 14-3-3 protein gamma; s 48.9 37 0.0013 29.0 6.3 53 229-291 148-201 (248)
332 2rpa_A Katanin P60 ATPase-cont 48.8 14 0.00049 25.5 3.0 32 212-243 12-43 (78)
333 3ax2_A Mitochondrial import re 48.2 24 0.00083 23.9 4.1 31 213-243 18-48 (73)
334 2w2u_A Hypothetical P60 katani 47.5 67 0.0023 22.2 7.1 14 317-330 45-58 (83)
335 3t5x_A PCI domain-containing p 47.2 48 0.0016 27.3 6.7 60 210-282 12-71 (203)
336 2cpt_A SKD1 protein, vacuolar 46.3 88 0.003 23.2 8.3 16 318-333 45-60 (117)
337 3rau_A Tyrosine-protein phosph 44.1 1.8E+02 0.0062 26.2 14.2 121 205-327 110-281 (363)
338 3c3r_A Programmed cell death 6 43.1 1.1E+02 0.0037 27.9 9.1 121 207-327 137-304 (380)
339 2ca5_A MXIH; transport protein 42.8 82 0.0028 21.9 6.1 36 317-352 29-64 (85)
340 3myv_A SUSD superfamily protei 42.1 31 0.0011 32.4 5.3 31 262-292 188-218 (454)
341 2xs1_A Programmed cell death 6 42.1 1.2E+02 0.004 30.3 9.8 120 207-326 122-288 (704)
342 3u84_A Menin; MLL, JUND, ledgf 41.6 1.6E+02 0.0055 27.3 9.5 64 283-346 298-372 (550)
343 3efz_A 14-3-3 protein; 14-3-3, 41.5 57 0.002 28.2 6.4 58 228-293 168-226 (268)
344 3kez_A Putative sugar binding 41.3 30 0.001 32.5 5.2 32 261-292 193-224 (461)
345 2cfu_A SDSA1; SDS-hydrolase, l 41.1 36 0.0012 33.7 5.8 50 266-315 451-500 (658)
346 3iqu_A 14-3-3 protein sigma; s 40.8 58 0.002 27.6 6.2 54 228-291 149-203 (236)
347 3re2_A Predicted protein; meni 40.5 19 0.00066 32.6 3.3 48 231-291 276-323 (472)
348 1zx8_A Hypothetical protein TM 40.4 1.2E+02 0.0042 23.2 8.6 107 4-150 11-123 (136)
349 1zb1_A BRO1 protein; AIP1, BRO 38.8 1.6E+02 0.0056 26.7 9.6 118 207-326 118-285 (392)
350 3mcx_A SUSD superfamily protei 38.7 35 0.0012 32.1 5.2 32 262-293 200-231 (477)
351 2cwy_A Hypothetical protein TT 38.5 1E+02 0.0035 21.8 6.9 63 216-292 5-67 (94)
352 2pmr_A Uncharacterized protein 38.4 36 0.0012 24.0 3.8 36 204-239 31-66 (87)
353 4gq4_A Menin; tumor suppressor 38.4 2.5E+02 0.0084 26.1 10.5 64 283-346 283-357 (489)
354 2oo2_A Hypothetical protein AF 38.3 35 0.0012 24.0 3.7 36 205-240 28-63 (86)
355 3u84_A Menin; MLL, JUND, ledgf 38.1 22 0.00075 32.9 3.3 48 231-291 298-345 (550)
356 2rkl_A Vacuolar protein sortin 38.0 58 0.002 20.5 4.3 37 206-242 14-50 (53)
357 1om2_A Protein (mitochondrial 37.8 44 0.0015 23.9 4.3 28 268-295 24-51 (95)
358 4gq4_A Menin; tumor suppressor 37.6 22 0.00077 32.8 3.3 48 231-291 283-330 (489)
359 4a5x_A MITD1, MIT domain-conta 37.3 1E+02 0.0035 21.4 9.2 22 305-326 23-44 (86)
360 3rk3_E Complexin-1; snare prot 36.8 72 0.0025 20.4 4.6 31 329-359 5-35 (63)
361 3qnk_A Putative lipoprotein; a 35.7 1.1E+02 0.0038 29.0 8.2 48 280-327 153-211 (517)
362 2g0u_A Type III secretion syst 35.7 1.2E+02 0.004 21.5 7.2 43 314-356 32-74 (92)
363 3lew_A SUSD-like carbohydrate 35.6 32 0.0011 32.7 4.3 59 228-293 174-232 (495)
364 2ymb_A MITD1, MIT domain-conta 35.2 8 0.00027 33.4 0.0 37 209-245 20-56 (257)
365 1qsa_A Protein (soluble lytic 34.9 2.1E+02 0.0073 27.9 10.2 118 219-351 221-338 (618)
366 3eab_A Spastin; spastin, MIT, 34.1 1.1E+02 0.0038 21.5 5.8 35 209-243 13-50 (89)
367 3snx_A SUSD homolog, putative 33.5 51 0.0017 31.0 5.3 32 261-292 188-219 (460)
368 3hdx_A SUSD homolog, SUSD supe 33.3 51 0.0017 31.0 5.3 34 260-293 193-226 (478)
369 2vkj_A TM1634; membrane protei 33.0 1.3E+02 0.0044 21.2 8.1 24 304-327 59-82 (106)
370 3myv_A SUSD superfamily protei 32.8 81 0.0028 29.4 6.6 48 280-327 164-219 (454)
371 1wfd_A Hypothetical protein 15 32.8 1.3E+02 0.0044 21.2 9.2 14 317-330 41-54 (93)
372 2ijq_A Hypothetical protein; s 32.7 1.8E+02 0.0062 22.9 8.5 60 268-327 36-104 (161)
373 3qnk_A Putative lipoprotein; a 32.7 96 0.0033 29.5 7.2 32 262-293 180-211 (517)
374 2qx5_A Nucleoporin NIC96; mRNA 31.1 2.1E+02 0.0073 28.2 9.4 31 300-331 538-570 (661)
375 3l22_A SUSD superfamily protei 30.9 44 0.0015 31.2 4.4 32 260-291 197-228 (441)
376 3mcx_A SUSD superfamily protei 30.8 1E+02 0.0035 28.9 7.0 49 280-328 176-232 (477)
377 3kez_A Putative sugar binding 29.3 92 0.0032 29.1 6.4 48 280-327 170-225 (461)
378 4b4t_O 26S proteasome regulato 29.2 2.7E+02 0.0093 25.2 9.4 103 223-326 87-197 (393)
379 2wb7_A PT26-6P; extra chromoso 29.2 3.7E+02 0.013 25.4 11.0 93 204-327 421-516 (526)
380 1wy6_A Hypothetical protein ST 28.8 80 0.0027 24.6 4.6 32 263-294 124-155 (172)
381 3qtm_A Uncharacterized protein 28.2 2.9E+02 0.01 23.9 11.2 106 205-310 15-131 (346)
382 2jpu_A ORF C02003 protein; sol 27.5 48 0.0016 25.2 3.2 31 210-240 5-35 (129)
383 3ph0_C ASCG; type III secretio 27.3 1.2E+02 0.0043 19.3 6.5 51 267-318 9-60 (61)
384 3lew_A SUSD-like carbohydrate 27.1 1.1E+02 0.0038 28.8 6.6 48 280-327 174-232 (495)
385 3jq1_A SUSD superfamily protei 27.1 62 0.0021 30.5 4.7 31 262-292 178-208 (481)
386 1vh6_A Flagellar protein FLIS; 26.8 1.6E+02 0.0056 22.6 6.3 39 207-245 28-66 (145)
387 3i4g_A SUSD-like carbohydrate 25.0 4.4E+02 0.015 24.9 10.5 93 226-326 93-226 (528)
388 3bu8_A Telomeric repeat-bindin 24.3 2.3E+02 0.008 23.6 6.9 62 270-331 120-190 (235)
389 2zan_A Vacuolar protein sortin 23.6 17 0.00057 34.1 0.0 37 209-245 8-44 (444)
390 2yhe_A SEC-alkyl sulfatase; hy 29.0 17 0.00059 36.1 0.0 49 299-347 462-510 (668)
391 2xze_A STAM-binding protein; h 23.2 2.6E+02 0.0088 21.5 8.2 21 303-323 45-65 (146)
392 3otn_A SUSD superfamily protei 22.9 3.2E+02 0.011 25.4 8.9 47 280-326 160-225 (482)
393 2yin_A DOCK2, dedicator of cyt 22.4 2.1E+02 0.0072 26.6 7.3 96 213-310 36-138 (436)
394 3q6c_A Probable receptor YHHM; 22.2 65 0.0022 22.4 2.8 36 18-67 46-81 (83)
395 3dhx_A Methionine import ATP-b 21.9 94 0.0032 22.4 3.9 29 12-42 59-87 (106)
396 1wol_A ST0689, 122AA long cons 21.5 1.3E+02 0.0043 22.1 4.7 36 205-240 4-39 (122)
397 4abx_A DNA repair protein RECN 21.4 1.3E+02 0.0044 23.9 5.0 49 281-329 73-121 (175)
398 2v6x_A Vacuolar protein sortin 21.3 2E+02 0.0069 19.6 8.8 17 310-326 25-41 (85)
399 3jys_A SUSD superfamily protei 21.2 1.1E+02 0.0037 29.0 5.2 29 264-292 188-222 (499)
400 2yhe_A SEC-alkyl sulfatase; hy 26.4 21 0.0007 35.6 0.0 52 266-317 463-514 (668)
401 3esl_A Checkpoint serine/threo 20.8 3.5E+02 0.012 22.1 13.3 86 233-328 58-145 (202)
402 1ufb_A TT1696 protein; structu 20.8 1.3E+02 0.0046 22.1 4.7 36 205-240 4-39 (127)
403 3iqc_A FLIS, flagellar protein 20.1 2.8E+02 0.0097 20.8 7.5 38 208-245 32-69 (131)
404 3lxu_X Tripeptidyl-peptidase 2 20.1 6.1E+02 0.021 27.4 10.8 86 260-346 1237-1331(1354)
No 1
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=3.6e-75 Score=551.93 Aligned_cols=356 Identities=49% Similarity=0.824 Sum_probs=325.9
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
+|+|||||+|++++.|+|+||||++.||+||+||+.||++.+|.|...|+++||+||.||||||||||||||++.++|+|
T Consensus 15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g 94 (370)
T 1ihg_A 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG 94 (370)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence 79999999999999999999999999999999999999998888766688889999999999999999999999889999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
++||||.+|+||++.++|+++|+||||+.||||+||||||++.+.|+||++|+|||+|++|++++++|+..++.. +.|.
T Consensus 95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~ 173 (370)
T 1ihg_A 95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA 173 (370)
T ss_dssp CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877 8899
Q ss_pred cceEeccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhh
Q 018089 163 ADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242 (361)
Q Consensus 163 ~~v~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~ 242 (361)
.+|.|..|+++.....+.+...+..++.|++++.++.....+.++..+.+..++.+|+.+++.|+|++|+.+|++|+++.
T Consensus 174 ~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~ 253 (370)
T 1ihg_A 174 KLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV 253 (370)
T ss_dssp SCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEEeccCccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99999999999877777766556689999999999977777899999999999999999999999999999999999976
Q ss_pred hhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
+.... ....+......+....+|+|+|.||+++++|++|+.+|++||+++|+++++++++|.+|..+|++++|+.+|+
T Consensus 254 ~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 254 EGSRA--AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp HHHHH--HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 54311 1112222336788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089 323 KALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361 (361)
Q Consensus 323 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 361 (361)
++++++|++..++..++.+...+++.++++++.|++||+
T Consensus 332 ~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~ 370 (370)
T 1ihg_A 332 KAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370 (370)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999995
No 2
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=1.6e-54 Score=363.60 Aligned_cols=171 Identities=59% Similarity=1.014 Sum_probs=163.6
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
||+|||||+|+++++|+|+||||++.||+||+||++||++.++.+...|+++||+|+.||||+|+|||||||++.++|+|
T Consensus 6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g 85 (177)
T 1a58_A 6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG 85 (177)
T ss_dssp CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence 79999999999999999999999999999999999999988776654567789999999999999999999998889999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
++|+||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus 86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~ 165 (177)
T 1a58_A 86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL 165 (177)
T ss_dssp CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cceEecccccc
Q 018089 163 ADVTITDCGEI 173 (361)
Q Consensus 163 ~~v~I~~~~~~ 173 (361)
.+|.|.+|+++
T Consensus 166 ~~v~I~~~G~l 176 (177)
T 1a58_A 166 ADVVILNCGEL 176 (177)
T ss_dssp SCEEEEEEEEE
T ss_pred CCeEEEEeEEE
Confidence 99999999976
No 3
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=2.2e-54 Score=362.98 Aligned_cols=171 Identities=61% Similarity=1.036 Sum_probs=164.5
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
+|+|||||+|+++++|+|+||||++.||+||+||++||++.++.+...++.+||+|+.||||+|+|||||||++.++|+|
T Consensus 9 ~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g 88 (179)
T 2wfi_A 9 RPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRG 88 (179)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCC
Confidence 89999999999999999999999999999999999999998887766678889999999999999999999998889999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
++|+||.+|+||++.++|+++|+|||||.+|+|++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.|.
T Consensus 89 g~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~ 168 (179)
T 2wfi_A 89 GESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPF 168 (179)
T ss_dssp CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBS
T ss_pred CCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cceEecccccc
Q 018089 163 ADVTITDCGEI 173 (361)
Q Consensus 163 ~~v~I~~~~~~ 173 (361)
.+|.|.+|+++
T Consensus 169 ~~v~I~~~G~l 179 (179)
T 2wfi_A 169 AEVRILSCGEL 179 (179)
T ss_dssp SCEEEEEEEEC
T ss_pred CCeEEEeCeeC
Confidence 99999999874
No 4
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=1.9e-54 Score=361.83 Aligned_cols=172 Identities=61% Similarity=1.093 Sum_probs=163.3
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.+|+|||||+|+++++|+|+||||++.||+||+||++||++.+|++. .|+++||+|+.||||+|+|||||||++.++|
T Consensus 1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G 79 (173)
T 2igv_A 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG 79 (173)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCc-cCccceECCCEEEEEECCCEEEcCCCCCCCC
Confidence 889999999999999999999999999999999999999998766653 4778899999999999999999999988899
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
+|++|+||.+|+||++.++|.++|+|||||.+|||+||||||++.+.|+||++|+|||+|++||++|++|+.+++.. +.
T Consensus 80 ~gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~-~~ 158 (173)
T 2igv_A 80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK 158 (173)
T ss_dssp SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred CCCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998854 89
Q ss_pred cccceEeccccccC
Q 018089 161 PIADVTITDCGEIP 174 (361)
Q Consensus 161 P~~~v~I~~~~~~~ 174 (361)
|..+|.|.+|+++.
T Consensus 159 P~~~v~I~~~g~l~ 172 (173)
T 2igv_A 159 PVKDCMIADCGQLK 172 (173)
T ss_dssp CSSCEEEEEEEEEC
T ss_pred CCCCEEEEEeEEEc
Confidence 99999999999873
No 5
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-54 Score=363.93 Aligned_cols=174 Identities=56% Similarity=0.961 Sum_probs=165.5
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
+.+|+|||||+|+++++|+|+||||++.||+||+||++||++.++.+...++.+||+|+.||||+|+|||||||++.++|
T Consensus 17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G 96 (192)
T 2he9_A 17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG 96 (192)
T ss_dssp --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence 35899999999999999999999999999999999999999988877666788899999999999999999999988899
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
+|++|+||.+|+||++.++|+++|+|||||.+|+|++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.
T Consensus 97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~ 176 (192)
T 2he9_A 97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR 176 (192)
T ss_dssp SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cccceEeccccccC
Q 018089 161 PIADVTITDCGEIP 174 (361)
Q Consensus 161 P~~~v~I~~~~~~~ 174 (361)
|..+|.|.+|+++.
T Consensus 177 P~~~v~I~~~g~l~ 190 (192)
T 2he9_A 177 PYADVRVIDCGVLA 190 (192)
T ss_dssp BSSCEEEEEEEECC
T ss_pred CcCCeEEEEeEEEc
Confidence 99999999999874
No 6
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=5.2e-53 Score=355.63 Aligned_cols=169 Identities=61% Similarity=0.986 Sum_probs=159.4
Q ss_pred CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (361)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (361)
.+|+|||||+|++++.|+|+||||++.||+||+||++||++.+|++. .|++++|+|+.||||+|+|||||||++.++|+
T Consensus 18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~-~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~ 96 (186)
T 2poy_A 18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGT 96 (186)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccc-cCccceECCCEEEEEeCCCEEEeCCCCCCCCC
Confidence 58999999999999999999999999999999999999998777754 47888899999999999999999999888999
Q ss_pred CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
|++|+||.+|+||++.++|.++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|+++++. ++.|
T Consensus 97 gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~P 175 (186)
T 2poy_A 97 GGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKP 175 (186)
T ss_dssp CCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCC
T ss_pred CCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 4899
Q ss_pred ccceEeccccc
Q 018089 162 IADVTITDCGE 172 (361)
Q Consensus 162 ~~~v~I~~~~~ 172 (361)
..+|.|.+|++
T Consensus 176 ~~~v~I~~cG~ 186 (186)
T 2poy_A 176 TKSVCITASGV 186 (186)
T ss_dssp SSCEEEEEEEC
T ss_pred CCCEEEEeCCC
Confidence 99999999974
No 7
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=8.1e-53 Score=350.94 Aligned_cols=169 Identities=59% Similarity=0.999 Sum_probs=158.1
Q ss_pred CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (361)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (361)
.||+|||||+|+++++|+|+||||++.||+||+||++||++. +++. .|++++|+|+.||||+|+|||||||++.++|+
T Consensus 2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~ 79 (170)
T 1qng_A 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGS-RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS 79 (170)
T ss_dssp CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECT-TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCc-cCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence 479999999999999999999999999999999999999854 3332 46677799999999999999999999888999
Q ss_pred CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
|++|+||.+|+||++.++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|+++++ .++.|
T Consensus 80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P 158 (170)
T 1qng_A 80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV 158 (170)
T ss_dssp CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55899
Q ss_pred ccceEecccccc
Q 018089 162 IADVTITDCGEI 173 (361)
Q Consensus 162 ~~~v~I~~~~~~ 173 (361)
..+|.|.+|+++
T Consensus 159 ~~~v~I~~cG~l 170 (170)
T 1qng_A 159 KRSVVITDCGEL 170 (170)
T ss_dssp SSCEEEEEEEEC
T ss_pred CCCeEEEeceeC
Confidence 999999999874
No 8
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=1.6e-52 Score=347.37 Aligned_cols=163 Identities=59% Similarity=0.983 Sum_probs=154.9
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD 79 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~ 79 (361)
|++|+|||||+|+++++|+|+||||++.||+||+||++||++.++ | |+|+.||||+|+|||||||++.++
T Consensus 1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~ 71 (165)
T 2z6w_A 1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG---------FGYKGSTFHRVIPSFMCQAGDFTNHN 71 (165)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC---------ccCcCCEEEEEECCCEEEeCCccCCC
Confidence 889999999999999999999999999999999999999996543 6 999999999999999999998889
Q ss_pred CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089 80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND 159 (361)
Q Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~ 159 (361)
|+|++|+||.+|+||++.++|.++|+||||+.+|+|++|||||++.+.|+||++|+|||+|++||+++++|+++++ .++
T Consensus 72 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~ 150 (165)
T 2z6w_A 72 GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSG 150 (165)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTS
T ss_pred CCCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 458
Q ss_pred CcccceEecccccc
Q 018089 160 CPIADVTITDCGEI 173 (361)
Q Consensus 160 ~P~~~v~I~~~~~~ 173 (361)
.|..+|.|.+|+++
T Consensus 151 ~P~~~v~I~~~g~l 164 (165)
T 2z6w_A 151 RTSKKIVITDCGQL 164 (165)
T ss_dssp CCSSCEEEEEEEEC
T ss_pred CCCCcEEEEEeEEE
Confidence 99999999999986
No 9
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=2.7e-52 Score=347.68 Aligned_cols=163 Identities=60% Similarity=1.000 Sum_probs=154.9
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD 79 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~ 79 (361)
|.+|+|||||+|+++++|+|+||||++.||+||+||++||++.+| | |+|+.||||+|+|||||||++.++
T Consensus 8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 78 (172)
T 2cmt_A 8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG---------FGYHNCCFHRVIPQFMCQGGDFVKGD 78 (172)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC---------ceECCCEEEEEECCCEEEcCCccCCC
Confidence 568999999999999999999999999999999999999997533 5 999999999999999999998889
Q ss_pred CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089 80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND 159 (361)
Q Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~ 159 (361)
|+|++|+||.+|+||++.++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|+++++.. +
T Consensus 79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~-~ 157 (172)
T 2cmt_A 79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-G 157 (172)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTT-C
T ss_pred CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998864 8
Q ss_pred CcccceEecccccc
Q 018089 160 CPIADVTITDCGEI 173 (361)
Q Consensus 160 ~P~~~v~I~~~~~~ 173 (361)
.|..+|.|.+|+++
T Consensus 158 ~P~~~v~I~~~g~l 171 (172)
T 2cmt_A 158 KVKEPVIISRCGEL 171 (172)
T ss_dssp CCSSCEEEEEEEEE
T ss_pred CCCCCEEEEEeEeE
Confidence 99999999999976
No 10
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=1.8e-52 Score=347.94 Aligned_cols=163 Identities=56% Similarity=0.907 Sum_probs=155.3
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD 79 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~ 79 (361)
|.+|+|||||+|+++++|+|+||||++.||+||+||++||++.++ | |+|+.||||+|+|||||||++.++
T Consensus 9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 79 (172)
T 2haq_A 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG---------FGYKDSIFHRVIQNFMIQGGDFTNFD 79 (172)
T ss_dssp CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEECCCEEecCCccCCC
Confidence 568999999999999999999999999999999999999976543 6 999999999999999999988889
Q ss_pred CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089 80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND 159 (361)
Q Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~ 159 (361)
|+|++|+||.+|+||++.++|. +|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|++++++.++
T Consensus 80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~ 158 (172)
T 2haq_A 80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD 158 (172)
T ss_dssp SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999998878
Q ss_pred CcccceEecccccc
Q 018089 160 CPIADVTITDCGEI 173 (361)
Q Consensus 160 ~P~~~v~I~~~~~~ 173 (361)
.|..+|.|.+|+.+
T Consensus 159 ~P~~~v~I~~~g~l 172 (172)
T 2haq_A 159 RPVKPVKIVASGEL 172 (172)
T ss_dssp CBSSCEEEEEEEEC
T ss_pred cCCCCeEEEEeEEC
Confidence 99999999999864
No 11
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=3.2e-52 Score=349.22 Aligned_cols=168 Identities=58% Similarity=0.994 Sum_probs=159.2
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
+|+|||||+|++++.|+|+||||++.||+||+||++||+++.+. .|++++|+|+.||||+|+|||||||++.++|+|
T Consensus 10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~---~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g 86 (177)
T 1mzw_A 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred CCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC---cCccceECCCEEEEEECCCEEEcCCcccCCCCC
Confidence 78999999999999999999999999999999999999987433 255667999999999999999999998889999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
++|+||.+|+||++.++|+++|+||||+.+|+|++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus 87 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~ 166 (177)
T 1mzw_A 87 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK 166 (177)
T ss_dssp CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred CCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cceEecccccc
Q 018089 163 ADVTITDCGEI 173 (361)
Q Consensus 163 ~~v~I~~~~~~ 173 (361)
.+|.|.+|+++
T Consensus 167 ~~v~I~~cG~l 177 (177)
T 1mzw_A 167 LPVVISQCGEM 177 (177)
T ss_dssp SCEEEEEEEEC
T ss_pred CCEEEEeceeC
Confidence 99999999874
No 12
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=7.8e-52 Score=345.63 Aligned_cols=163 Identities=57% Similarity=0.962 Sum_probs=154.9
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGD 79 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~ 79 (361)
|.+|+|||||+|+++++|+|+||||++.||+||+||++||++.++ | |+|+.||||+|+|||||||++.++
T Consensus 9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 79 (173)
T 2r99_A 9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG---------FGFKGSSFHRIIPQFMCQGGDFTNHN 79 (173)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCC---------ceecCCEEEEeeCCCEEEeCCcCCCC
Confidence 568999999999999999999999999999999999999986543 5 999999999999999999999889
Q ss_pred CCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCC
Q 018089 80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND 159 (361)
Q Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~ 159 (361)
|+|++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+.+++.. +
T Consensus 80 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~-~ 158 (173)
T 2r99_A 80 GTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-G 158 (173)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-C
T ss_pred CCCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998865 7
Q ss_pred CcccceEecccccc
Q 018089 160 CPIADVTITDCGEI 173 (361)
Q Consensus 160 ~P~~~v~I~~~~~~ 173 (361)
.|..+|.|.+|+++
T Consensus 159 ~P~~~v~I~~cG~l 172 (173)
T 2r99_A 159 KPKQKVIIADCGEY 172 (173)
T ss_dssp CCSSCEEEEEEEEC
T ss_pred CCCCCeEEEEeeeE
Confidence 99999999999986
No 13
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=8.1e-52 Score=343.56 Aligned_cols=162 Identities=57% Similarity=0.952 Sum_probs=155.2
Q ss_pred CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCCC
Q 018089 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
+||+|||||+|+++++|+|+||||++.||+||+||++||+++++ | |+|+.||||+|+|||||||++.++|
T Consensus 1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~g 71 (164)
T 3pmp_A 1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG---------FGYKDSIFHRVIPQFMLQGGDFTRHNG 71 (164)
T ss_dssp CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC---------CcccCCEEEEEECCCeEEeCCCCCCCC
Confidence 48999999999999999999999999999999999999996643 6 9999999999999999999888899
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
+|++++||.+|++|++.++|+++|+|||||.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++ ++.
T Consensus 72 ~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~ 150 (164)
T 3pmp_A 72 TGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGK 150 (164)
T ss_dssp SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCC
T ss_pred CCCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 488
Q ss_pred cccceEecccccc
Q 018089 161 PIADVTITDCGEI 173 (361)
Q Consensus 161 P~~~v~I~~~~~~ 173 (361)
|..+|+|.+|+++
T Consensus 151 P~~~v~I~~cg~l 163 (164)
T 3pmp_A 151 TNATIKITDCGTV 163 (164)
T ss_dssp CSSCEEEEEEEEC
T ss_pred cccCEEEEeCeEE
Confidence 9999999999986
No 14
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=1.7e-51 Score=355.33 Aligned_cols=168 Identities=49% Similarity=0.932 Sum_probs=160.0
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
+|+|||||+|+++++|+|+||||.+.||+||+||++||+++++.+ |+++||+|+.||||+|+|||||||++.++|+|
T Consensus 59 ~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~---g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~G 135 (229)
T 1z81_A 59 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG 135 (229)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred CcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc---CCCceECCCEEEEEeCCCEEEcCCCcCCCCCC
Confidence 789999999999999999999999999999999999999876543 66779999999999999999999998889999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEe--cChHHHHHHhccCCCCC-C
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDN-D 159 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~--~g~~vl~~i~~~~~~~~-~ 159 (361)
+++|||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|+ +||++|++|++++++.. +
T Consensus 136 g~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~ 215 (229)
T 1z81_A 136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY 215 (229)
T ss_dssp CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred CCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999886 8
Q ss_pred CcccceEecccccc
Q 018089 160 CPIADVTITDCGEI 173 (361)
Q Consensus 160 ~P~~~v~I~~~~~~ 173 (361)
.|..+|.|.+|+++
T Consensus 216 ~P~~~V~I~~cG~l 229 (229)
T 1z81_A 216 KPKIPINVVECGEL 229 (229)
T ss_dssp CBSSCEEEEEEEEC
T ss_pred CCCCCeEEEeCeeC
Confidence 99999999999874
No 15
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=5.1e-51 Score=343.72 Aligned_cols=164 Identities=59% Similarity=0.983 Sum_probs=155.3
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.+|+|||||+|+++++|+|+||||++.||+||+||++||++++|+ .|+|+.||||+|+|||||||++.++|
T Consensus 20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g 91 (184)
T 3rdd_A 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGF--------GYKGSCFHRIIPGFMCQGGDFTRHNG 91 (184)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------SSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCc--------ccCCCEEEEccCCcEEEeCCCCCCCC
Confidence 5699999999999999999999999999999999999999976432 19999999999999999999988899
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
+|++++||.+|++|++.++|+++|+||||+.+|+++||||||++.+.|+||++|+|||+|++||++|++|+++++. ++.
T Consensus 92 ~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~ 170 (184)
T 3rdd_A 92 TGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGK 170 (184)
T ss_dssp SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSC
T ss_pred CCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875 489
Q ss_pred cccceEecccccc
Q 018089 161 PIADVTITDCGEI 173 (361)
Q Consensus 161 P~~~v~I~~~~~~ 173 (361)
|..+|+|.+|+++
T Consensus 171 P~~~v~I~~cG~l 183 (184)
T 3rdd_A 171 TSKKITIADCGQL 183 (184)
T ss_dssp CSSCEEEEEEEEC
T ss_pred CcCCeEEEeCeEE
Confidence 9999999999987
No 16
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=3.8e-51 Score=345.31 Aligned_cols=163 Identities=59% Similarity=0.998 Sum_probs=156.0
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAGDGT 81 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (361)
+++|||||+|+++++|+|+||||.+.||+||+||++||++.+| | |+|+.||||+|+|||||||++.++|+
T Consensus 15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~ 85 (188)
T 3ich_A 15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG---------FGYKNSKFHRVIKDFMIQGGDFTRGDGT 85 (188)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC---------ccccCCEEEEEECCCEEEcCCccCCCCC
Confidence 5799999999999999999999999999999999999986543 6 99999999999999999998888999
Q ss_pred CCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
|++|+||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++.++.|
T Consensus 86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P 165 (188)
T 3ich_A 86 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKP 165 (188)
T ss_dssp CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred CCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred ccceEeccccccC
Q 018089 162 IADVTITDCGEIP 174 (361)
Q Consensus 162 ~~~v~I~~~~~~~ 174 (361)
..+|.|.+|+++.
T Consensus 166 ~~~v~I~~~~~l~ 178 (188)
T 3ich_A 166 LKDVIIADCGKIE 178 (188)
T ss_dssp SSCEEEEEEEEEE
T ss_pred CCCEEEEEeEEEe
Confidence 9999999999883
No 17
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=5.6e-51 Score=344.83 Aligned_cols=164 Identities=59% Similarity=0.998 Sum_probs=157.3
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
+++|||||+|+++++|+|+||||++.||+||+||++||++++|. +|+|+.||||+|+|||||||++.++|+|
T Consensus 12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g~g 83 (185)
T 4fru_A 12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF--------GYKDSKFHRVIKDFMIQGGDFTRGDGTG 83 (185)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC--------eEcCCEEEEeeCCCeEEECCCCCCCCCC
Confidence 68999999999999999999999999999999999999875432 6999999999999999999999889999
Q ss_pred CCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
++++||.+|++|++.++|+++|+|||||.+|+++||||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus 84 g~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~ 163 (185)
T 4fru_A 84 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL 163 (185)
T ss_dssp CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred CccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cceEeccccccC
Q 018089 163 ADVTITDCGEIP 174 (361)
Q Consensus 163 ~~v~I~~~~~~~ 174 (361)
.+|.|.+|+++.
T Consensus 164 ~~v~I~~~g~l~ 175 (185)
T 4fru_A 164 KDVTIADCGKIE 175 (185)
T ss_dssp SCEEEEEEEEEE
T ss_pred CCEEEEEceEEe
Confidence 999999999884
No 18
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.4e-50 Score=343.15 Aligned_cols=165 Identities=52% Similarity=0.872 Sum_probs=156.1
Q ss_pred CCCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCC
Q 018089 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.||+|||||+|+++++|+|+||||++.||+||+||++||++++++ +|+|+.||||+|+|||||||++.++|
T Consensus 25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g 96 (193)
T 3k2c_A 25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE--------GYKGSTFHRIIPGFMVQGGDYTAHNG 96 (193)
T ss_dssp -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTS--------SSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCC--------cccCCEEEEEeCCCEEEeCCCCCCCC
Confidence 5699999999999999999999999999999999999999976432 29999999999999999999988899
Q ss_pred CCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCC
Q 018089 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~ 160 (361)
+|++++||.+|++|++.++|+++|+||||+.+|+++||||||++.+.|+||++|+|||+|++||++|++|++++++. +.
T Consensus 97 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~-g~ 175 (193)
T 3k2c_A 97 TGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSES-GQ 175 (193)
T ss_dssp SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred cCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975 78
Q ss_pred cc--cceEeccccccC
Q 018089 161 PI--ADVTITDCGEIP 174 (361)
Q Consensus 161 P~--~~v~I~~~~~~~ 174 (361)
|. .+|+|.+|+++.
T Consensus 176 P~~~~~v~I~~cG~l~ 191 (193)
T 3k2c_A 176 VKKGYRIEIRDCGVLG 191 (193)
T ss_dssp CCTTCCEEEEEEEECC
T ss_pred CccCccEEEEEceEeC
Confidence 88 999999999985
No 19
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=3.4e-50 Score=335.36 Aligned_cols=160 Identities=54% Similarity=0.929 Sum_probs=121.8
Q ss_pred EEEEEEEeC--Ceee---eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCccc-ccCceeEEeecCceEEeCcCCCC
Q 018089 5 RCFLDISIG--VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKGVRFHRVIKGFMIQGGDISAG 78 (361)
Q Consensus 5 ~~~~~~~~~--~~~~---g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~G~~~~~ 78 (361)
+|||||+|+ |++. |+|+||||++.||+||+||++||++.+| + |+|+.||||+|+|||||||++.+
T Consensus 4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~ 74 (172)
T 2c3b_A 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG---------EGYRESTFHRIIPNFMIQGGDFTRG 74 (172)
T ss_dssp CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT---------TSSTTCBCCEEETTTEEEECC----
T ss_pred EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEeCCCEEEeCCcCCC
Confidence 899999999 7666 9999999999999999999999997643 5 99999999999999999998778
Q ss_pred CCCCCCccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec--ChHHHHHHhccCCC
Q 018089 79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMTG 156 (361)
Q Consensus 79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~--g~~vl~~i~~~~~~ 156 (361)
+|+|++|+||.+|+||++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++ ||+++++|++++++
T Consensus 75 ~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~ 154 (172)
T 2c3b_A 75 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS 154 (172)
T ss_dssp ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred CCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred CCC-CcccceEecccccc
Q 018089 157 DND-CPIADVTITDCGEI 173 (361)
Q Consensus 157 ~~~-~P~~~v~I~~~~~~ 173 (361)
..+ .|..+|.|.+|+.+
T Consensus 155 ~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 155 SGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp TSCCCSSSCCEEEEEEEC
T ss_pred CCCccCCCCeEEEeCeeC
Confidence 755 99999999999874
No 20
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=3.3e-49 Score=343.91 Aligned_cols=174 Identities=29% Similarity=0.537 Sum_probs=152.0
Q ss_pred CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCC---------CCCCcccccCceeEEeecCceEEe
Q 018089 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP---------NTGVPLHYKGVRFHRVIKGFMIQG 72 (361)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~---------~~~~~~~y~g~~~~rv~~~~~iq~ 72 (361)
.+|.|||||+|+++++|+|+||||.+.||+||+||++||++.+.... ..|++..|+|+.||||+|+|||||
T Consensus 13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg 92 (234)
T 2ose_A 13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS 92 (234)
T ss_dssp SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence 48999999999999999999999999999999999999997622100 013333399999999999999999
Q ss_pred CcCCCCCCCCCCccCCCC-----CCCCCcCCCCCCceEEEeee----CCCCCCCcceEeecCC------CCCCCCCceEE
Q 018089 73 GDISAGDGTGGESIYGLK-----FEDENFELKHERKGMLSMAN----AGPNTNGSQFFITTTR------TSHLDGKHVVF 137 (361)
Q Consensus 73 G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~g~~~~~~----~~~~~~~sqF~i~~~~------~~~ld~~~~vf 137 (361)
||+..++|+|++|+||.+ |+ ++.++|+++|+||||| .+|+|+||||||++.+ .|+||++|+||
T Consensus 93 Gd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF 170 (234)
T 2ose_A 93 GDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI 170 (234)
T ss_dssp CCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred CCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence 998888999999999998 77 5689999999999999 8999999999999999 89999999999
Q ss_pred eEEecChHHHHHHhccCCCCCCCcccceEeccccccCCCC
Q 018089 138 GRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGA 177 (361)
Q Consensus 138 G~v~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~~~~~~ 177 (361)
|+|++||++|++|++++++.++.|..+|.|.+|+++..++
T Consensus 171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~ 210 (234)
T 2ose_A 171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSS 210 (234)
T ss_dssp EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHH
T ss_pred EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCc
Confidence 9999999999999999998889999999999999997653
No 21
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=1.1e-47 Score=323.34 Aligned_cols=160 Identities=43% Similarity=0.717 Sum_probs=147.1
Q ss_pred EEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCcc
Q 018089 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESI 86 (361)
Q Consensus 7 ~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~ 86 (361)
+++|.+. +++|+|+||||++.||+||+||++||+++ ||+|+.||||+|+|||||||++ ++|+|++++
T Consensus 16 ~~~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si 82 (185)
T 2poe_A 16 FQGVRII-TNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESI 82 (185)
T ss_dssp CCEEEEE-ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTEEEEEECTTSEEEEEETT-SSSSCCCBT
T ss_pred ceEEEEE-ecCccEEEEEeCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCcc
Confidence 3445555 67999999999999999999999999976 8999999999999999999987 789999999
Q ss_pred CCCCCCCCC-cCCCCCCceEEEeeeCC----CCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 87 YGLKFEDEN-FELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 87 ~~~~~~~e~-~~~~~~~~g~~~~~~~~----~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
||.+|++|+ +.++|+++|+|||||.+ |+|+||||||++.+.|+||++|+|||+|++||++|++|++++++..+.|
T Consensus 83 ~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P 162 (185)
T 2poe_A 83 YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKP 162 (185)
T ss_dssp TBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCB
T ss_pred CCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCc
Confidence 999999998 78999999999999999 9999999999999999999999999999999999999999999888999
Q ss_pred ccceEeccccccCCCCCC
Q 018089 162 IADVTITDCGEIPEGADD 179 (361)
Q Consensus 162 ~~~v~I~~~~~~~~~~~~ 179 (361)
..+|.|.+|.++..++.+
T Consensus 163 ~~~v~I~~~~i~~dPf~d 180 (185)
T 2poe_A 163 IDEIIIKDIVIHSNPIAD 180 (185)
T ss_dssp SSCCEEEEEEEECCC---
T ss_pred CCCeEEEEEEEECCCCCC
Confidence 999999999999766443
No 22
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=2.7e-47 Score=316.05 Aligned_cols=154 Identities=50% Similarity=0.844 Sum_probs=145.3
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
++.|.|+++ +|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|
T Consensus 11 ~~~v~l~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~g 73 (166)
T 2x7k_A 11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG 73 (166)
T ss_dssp CSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred CCEEEEEeC-----CCcEEEEEccCCCCHHHHHHHHHHhcC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence 567888765 899999999999999999999999976 8999999999999999999987 67999
Q ss_pred CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
++|+||.+|++|+ +.++|.++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||+++++|+.++++..+.|
T Consensus 74 g~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P 153 (166)
T 2x7k_A 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP 153 (166)
T ss_dssp CCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCB
T ss_pred CCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence 9999999999998 489999999999999999999999999999999999999999999999999999999999888899
Q ss_pred ccceEecccccc
Q 018089 162 IADVTITDCGEI 173 (361)
Q Consensus 162 ~~~v~I~~~~~~ 173 (361)
..+|.|.++.++
T Consensus 154 ~~~i~I~~~~i~ 165 (166)
T 2x7k_A 154 VDDVKIIKAYPS 165 (166)
T ss_dssp SSCCEEEEEEEC
T ss_pred CCCeEEEEEEEe
Confidence 999999998765
No 23
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=2.5e-47 Score=315.35 Aligned_cols=152 Identities=48% Similarity=0.767 Sum_probs=143.6
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|++|+|+||||++.||+||+||++||+++ ||+|+.||||+|+|||||||++ ++|+|++|+||.+|++|
T Consensus 7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE 74 (161)
T 2ok3_A 7 TDVGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDE 74 (161)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred eCCccEEEEEcCCCCcHHHHHHHHHhhhc-----------ccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccc
Confidence 66999999999999999999999999986 8999999999999999999987 67999999999999999
Q ss_pred Cc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC-CCcccceEeccccc
Q 018089 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE 172 (361)
Q Consensus 95 ~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~ 172 (361)
+. .++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++.. +.|..+|.|.++.+
T Consensus 75 ~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i 154 (161)
T 2ok3_A 75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_dssp CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEE
T ss_pred cCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEE
Confidence 85 78999999999999999999999999999999999999999999999999999999999886 89999999999999
Q ss_pred cCCCCC
Q 018089 173 IPEGAD 178 (361)
Q Consensus 173 ~~~~~~ 178 (361)
+..+++
T Consensus 155 ~~~Pf~ 160 (161)
T 2ok3_A 155 HANPFA 160 (161)
T ss_dssp ECCSCC
T ss_pred ecCCCC
Confidence 866543
No 24
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=5.5e-47 Score=312.30 Aligned_cols=153 Identities=47% Similarity=0.700 Sum_probs=142.4
Q ss_pred CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG 83 (361)
Q Consensus 4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (361)
+.|.+++ +.|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|+
T Consensus 6 ~~v~~~T-----~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg 68 (160)
T 2fu0_A 6 KSAIIYT-----TMGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGG 68 (160)
T ss_dssp CEEEEEE-----TTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred CEEEEEe-----cCccEEEEEeCCCChHHHHHHHHHhccC-----------ccCCCEEEEEECCCEEEeCCcC-CCCCCC
Confidence 4555544 4899999999999999999999999976 8999999999999999999986 679999
Q ss_pred CccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCcc
Q 018089 84 ESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 84 ~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
+++||.+|+||+. .++|.++|+||||+.+|+|++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|.
T Consensus 69 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~ 148 (160)
T 2fu0_A 69 ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPL 148 (160)
T ss_dssp CCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred CcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcC
Confidence 9999999999988 699999999999999999999999999999999999999999999999999999999998889999
Q ss_pred cceEecccccc
Q 018089 163 ADVTITDCGEI 173 (361)
Q Consensus 163 ~~v~I~~~~~~ 173 (361)
.+|.|.++.+.
T Consensus 149 ~~v~I~~~~v~ 159 (160)
T 2fu0_A 149 EDIKILNIKIN 159 (160)
T ss_dssp SCCBEEEEEEC
T ss_pred CCeEEEEEEEe
Confidence 99999988654
No 25
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=6.2e-47 Score=320.50 Aligned_cols=156 Identities=47% Similarity=0.701 Sum_probs=144.7
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
++.|.|+++ +|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|
T Consensus 38 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRVi~~f~iQgGd~~-~~g~g 100 (196)
T 2b71_A 38 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG 100 (196)
T ss_dssp SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred CcEEEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence 467777765 899999999999999999999999976 8999999999999999999987 78999
Q ss_pred CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
++|+||.+|++|. ..++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++..++|
T Consensus 101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P 180 (196)
T 2b71_A 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP 180 (196)
T ss_dssp CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCC
Confidence 9999999999995 578999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccceEeccccccCC
Q 018089 162 IADVTITDCGEIPE 175 (361)
Q Consensus 162 ~~~v~I~~~~~~~~ 175 (361)
..+|.|.+|.++..
T Consensus 181 ~~~i~I~~~~i~~d 194 (196)
T 2b71_A 181 IFDLKILRTSTAVN 194 (196)
T ss_dssp SSCCEEEEEEC---
T ss_pred CCCeEEEEEEEecC
Confidence 99999999998754
No 26
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1.4e-46 Score=318.21 Aligned_cols=150 Identities=45% Similarity=0.758 Sum_probs=142.2
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|++|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|++++||.+|+||
T Consensus 26 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE 93 (197)
T 1zkc_A 26 TNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDE 93 (197)
T ss_dssp ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCC
T ss_pred eCCccEEEEEcCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCccccc
Confidence 55999999999999999999999999976 8999999999999999999987 68999999999999999
Q ss_pred -CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCC-CCcccceEeccccc
Q 018089 95 -NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE 172 (361)
Q Consensus 95 -~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~ 172 (361)
++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++||++|++|++++++.. +.|..+|.|.+|++
T Consensus 94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v 173 (197)
T 1zkc_A 94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173 (197)
T ss_dssp CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999886 89999999999999
Q ss_pred cCCC
Q 018089 173 IPEG 176 (361)
Q Consensus 173 ~~~~ 176 (361)
+..+
T Consensus 174 ~~dP 177 (197)
T 1zkc_A 174 FVDP 177 (197)
T ss_dssp EECT
T ss_pred EcCC
Confidence 8544
No 27
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=1e-46 Score=314.82 Aligned_cols=149 Identities=52% Similarity=0.750 Sum_probs=139.4
Q ss_pred eCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCC
Q 018089 12 IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKF 91 (361)
Q Consensus 12 ~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~ 91 (361)
+-.+++|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|++|+||.+|
T Consensus 25 ~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~ 92 (176)
T 2a2n_A 25 IIHTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEF 92 (176)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCB
T ss_pred EEEecCccEEEEEeCCCChHHHHHHHHHhhcC-----------ccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcc
Confidence 33466999999999999999999999999976 8999999999999999999986 67999999999999
Q ss_pred CCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCC-CCCCcccceEecc
Q 018089 92 EDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTG-DNDCPIADVTITD 169 (361)
Q Consensus 92 ~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~-~~~~P~~~v~I~~ 169 (361)
+||+. .++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||+++++|++++++ .++.|..+|.|.+
T Consensus 93 ~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~ 172 (176)
T 2a2n_A 93 EDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172 (176)
T ss_dssp CCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEE
T ss_pred ccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEE
Confidence 99988 699999999999999999999999999999999999999999999999999999999998 5689999999988
Q ss_pred ccc
Q 018089 170 CGE 172 (361)
Q Consensus 170 ~~~ 172 (361)
+.+
T Consensus 173 v~v 175 (176)
T 2a2n_A 173 ITV 175 (176)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 28
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=3.6e-46 Score=316.76 Aligned_cols=159 Identities=49% Similarity=0.828 Sum_probs=148.9
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
++.|.|+++ +|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|++
T Consensus 11 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~F~iQgGd~~-~~g~g 73 (203)
T 2k7n_A 11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG 73 (203)
T ss_dssp CSEEEEEES-----SCEEEEEECTTTCTTHHHHHHHHHHHT-----------CGGGCEEEEEETTTEEEEECSS-SSSSC
T ss_pred CCEEEEEeC-----CCcEEEEEccCCCcHHHHHHHHHHhcC-----------ccCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence 578888775 899999999999999999999999976 8999999999999999999987 67899
Q ss_pred CCccCCCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 83 ~~~~~~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
++++||.+|++|+ +.++|.++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.|
T Consensus 74 g~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P 153 (203)
T 2k7n_A 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP 153 (203)
T ss_dssp CCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEE
T ss_pred CCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence 9999999999998 589999999999999999999999999999999999999999999999999999999999887899
Q ss_pred ccceEeccccccCCCCC
Q 018089 162 IADVTITDCGEIPEGAD 178 (361)
Q Consensus 162 ~~~v~I~~~~~~~~~~~ 178 (361)
..+|.|.+|.++.....
T Consensus 154 ~~~V~I~~~~v~~~~~s 170 (203)
T 2k7n_A 154 VDDVKIIKAYPSGGGGS 170 (203)
T ss_dssp CCCCBEEEEEECCCCCC
T ss_pred CCCeEEEEEEEEecCCC
Confidence 99999999999876543
No 29
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=1.1e-45 Score=312.02 Aligned_cols=161 Identities=44% Similarity=0.712 Sum_probs=142.2
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCC-CCC---CcccccCceeEEeecCceEEeCcCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP-NTG---VPLHYKGVRFHRVIKGFMIQGGDISAG 78 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~-~~~---~~~~y~g~~~~rv~~~~~iq~G~~~~~ 78 (361)
++.|.|+ +++|+|+||||++.||+||+||++||++.++... .+| +.+||+|+.||||+|+|||||||+. +
T Consensus 23 ~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~-g 96 (191)
T 1w74_A 23 TATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-G 96 (191)
T ss_dssp SEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-S
T ss_pred CeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC-C
Confidence 4455554 4589999999999999999999999988776421 112 2359999999999999999999975 6
Q ss_pred CCCCCCccCCCCCCCC-CcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEec--ChHHHHHHhccCC
Q 018089 79 DGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMT 155 (361)
Q Consensus 79 ~~~~~~~~~~~~~~~e-~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~--g~~vl~~i~~~~~ 155 (361)
+|+|+ ||.+|+|| ++.++|+++|+|||||.+|+|+||||||++.+.|+||++|+|||+|++ ||++|++|+++++
T Consensus 97 ~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t 173 (191)
T 1w74_A 97 TGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT 173 (191)
T ss_dssp SSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCB
T ss_pred CCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCc
Confidence 67777 58899999 468999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCcccceEeccccc
Q 018089 156 GDNDCPIADVTITDCGE 172 (361)
Q Consensus 156 ~~~~~P~~~v~I~~~~~ 172 (361)
+..+.|..+|.|.+|++
T Consensus 174 ~~~~~P~~~v~I~~~~i 190 (191)
T 1w74_A 174 DGNDRPTDPVVIESITI 190 (191)
T ss_dssp CTTSCBSSCCEEEEEEE
T ss_pred CCCCCcCCCeEEEEEEE
Confidence 88899999999999875
No 30
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=6.1e-46 Score=317.48 Aligned_cols=154 Identities=36% Similarity=0.585 Sum_probs=137.4
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeC-----cCCCCCCCCCCccC--
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGG-----DISAGDGTGGESIY-- 87 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G-----~~~~~~~~~~~~~~-- 87 (361)
|+.|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||| |++ ++|+|++|+|
T Consensus 13 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~si~~~ 80 (201)
T 3bo7_A 13 TTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQSPRSI 80 (201)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEECCGGGCCC--------CCSSCC
T ss_pred eCCCCEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCcccccc
Confidence 45899999999999999999999999976 9999999999999999999 987 7799999999
Q ss_pred -----CCCCCCCC-cCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHHHHHhccCCCCCCCc
Q 018089 88 -----GLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 88 -----~~~~~~e~-~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl~~i~~~~~~~~~~P 161 (361)
|.+|++|. +.++|+++|+||||+.+|+|+||||||++.+.|+||++|+|||+|++||++|++|+.++++..+.|
T Consensus 81 ~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P 160 (201)
T 3bo7_A 81 SGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKP 160 (201)
T ss_dssp CSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCB
T ss_pred ccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCc
Confidence 89999994 788999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ccceEeccccccCCCCCCC
Q 018089 162 IADVTITDCGEIPEGADDG 180 (361)
Q Consensus 162 ~~~v~I~~~~~~~~~~~~~ 180 (361)
..+|.|.+|+++..++++.
T Consensus 161 ~~~i~I~~~~v~~dPf~d~ 179 (201)
T 3bo7_A 161 LKPPKVEEIIVFKNPFEDA 179 (201)
T ss_dssp SSCCBEEEEEEEECCC---
T ss_pred CCCeEEEEEEEEcCCccCH
Confidence 9999999999997765544
No 31
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=309.00 Aligned_cols=158 Identities=40% Similarity=0.727 Sum_probs=145.7
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
++.|+|+++ +|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|
T Consensus 24 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~g 86 (185)
T 2hq6_A 24 NGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEA-----------YYDNTIFHRVVPGFIVQGGDPT-GTGSG 86 (185)
T ss_dssp BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred CCEEEEEeC-----CccEEEEEeCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence 567888875 899999999999999999999999976 8999999999999999999986 67999
Q ss_pred CCccCCCCCCCCCc-CCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCCCCceEEeEEecChHHH--HHHhccCCCCCC
Q 018089 83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVV--RSIEHVMTGDND 159 (361)
Q Consensus 83 ~~~~~~~~~~~e~~-~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~vl--~~i~~~~~~~~~ 159 (361)
++++||.+|++|+. .++|+++|+|||||.+|+++||||||++.+.|+||++|+|||+|+ |++++ ++|+.++++.++
T Consensus 87 g~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~ 165 (185)
T 2hq6_A 87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDE 165 (185)
T ss_dssp CCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTS
T ss_pred CCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCC
Confidence 99999999999986 688999999999999999999999999999999999999999999 88774 678888888889
Q ss_pred CcccceEeccccccCCCCC
Q 018089 160 CPIADVTITDCGEIPEGAD 178 (361)
Q Consensus 160 ~P~~~v~I~~~~~~~~~~~ 178 (361)
.|..+|.|.+|+++..+++
T Consensus 166 ~P~~~v~I~~~~v~~~Pf~ 184 (185)
T 2hq6_A 166 RPHNPHKIKSCEVLFNPFD 184 (185)
T ss_dssp CBSSCCEEEEEEEEECTTC
T ss_pred CCCCCeEEEEEEEeCCCCC
Confidence 9999999999999876543
No 32
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=2.6e-44 Score=299.01 Aligned_cols=153 Identities=31% Similarity=0.502 Sum_probs=136.9
Q ss_pred CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (361)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (361)
.+|.|+|+++ +|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++...
T Consensus 3 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~-- 64 (166)
T 1v9t_A 3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQM-- 64 (166)
T ss_dssp CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTC--
T ss_pred CCeEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCcEEEcCCcCcCC--
Confidence 4788999864 899999999999999999999999876 8999999999999999999987432
Q ss_pred CCCccCCCCCCCCCcCCCCCCceEEEeeeC-CCCCCCcceEeecCCCCCCCCC-----ceEEeEEecChHHHHHHhccCC
Q 018089 82 GGESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK-----HVVFGRVIKGMGVVRSIEHVMT 155 (361)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~ld~~-----~~vfG~v~~g~~vl~~i~~~~~ 155 (361)
+.+.+|.+|++|+....|+.+|+|||||. +|||+||||||++.+.|+||++ |+|||+|++||++|++|+++++
T Consensus 65 -~~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~ 143 (166)
T 1v9t_A 65 -QQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 143 (166)
T ss_dssp -CBCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred -CCCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCC
Confidence 23446888999987766788999999997 5999999999999999999998 9999999999999999999988
Q ss_pred CC----CCCcccceEecccccc
Q 018089 156 GD----NDCPIADVTITDCGEI 173 (361)
Q Consensus 156 ~~----~~~P~~~v~I~~~~~~ 173 (361)
+. ++.|..+|.|.++.++
T Consensus 144 ~~~~~~~~~P~~~v~I~~~~v~ 165 (166)
T 1v9t_A 144 HDVGPYQNVPSKPVVILSATVL 165 (166)
T ss_dssp EEETTEEEEESSCCBEEEEEEC
T ss_pred CCCCccCCCcCCCeEEEEEEEe
Confidence 75 3679999999998765
No 33
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=5.5e-44 Score=310.30 Aligned_cols=161 Identities=34% Similarity=0.580 Sum_probs=146.2
Q ss_pred CCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCC
Q 018089 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
.+.|+|+++ +|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|||||||++ ++|+|
T Consensus 21 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydgt~FhRVi~~FmiQgGdp~-~~G~G 83 (232)
T 3bkp_A 21 RGKVVLHTS-----LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGDPT-GTGRG 83 (232)
T ss_dssp BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHHT-----------TTTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred CCEEEEEEC-----CCcEEEEEcCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence 457888765 899999999999999999999999986 9999999999999999999987 78999
Q ss_pred CCccC--CCCCCCCCc-CCCCCCceEEEeeeCCC--------------CCCCcceEeecCCCCCCCCCceEEeEEecChH
Q 018089 83 GESIY--GLKFEDENF-ELKHERKGMLSMANAGP--------------NTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG 145 (361)
Q Consensus 83 ~~~~~--~~~~~~e~~-~~~~~~~g~~~~~~~~~--------------~~~~sqF~i~~~~~~~ld~~~~vfG~v~~g~~ 145 (361)
++++| |.+|+||+. .++|+.+|+||||+.++ +|+||||||++.+.|+||++|+|||+|+ |++
T Consensus 84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~ 162 (232)
T 3bkp_A 84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT 162 (232)
T ss_dssp CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence 99999 999999986 68899999999999996 6999999999999999999999999999 776
Q ss_pred H--HHHHhccCCCCCCCcccceEeccccccCCCCCCCC
Q 018089 146 V--VRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181 (361)
Q Consensus 146 v--l~~i~~~~~~~~~~P~~~v~I~~~~~~~~~~~~~~ 181 (361)
+ +++|+.++++.+++|..+|.|.+|+++..++.+..
T Consensus 163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~d~~ 200 (232)
T 3bkp_A 163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDLV 200 (232)
T ss_dssp HHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCTTCC
T ss_pred hHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChhhhh
Confidence 6 88999999988899999999999999987765553
No 34
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=1.9e-43 Score=294.61 Aligned_cols=153 Identities=33% Similarity=0.502 Sum_probs=135.2
Q ss_pred CCCEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCC
Q 018089 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGT 81 (361)
Q Consensus 2 ~~~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~ 81 (361)
++|.|.|+++ +|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++...
T Consensus 2 p~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~-- 63 (167)
T 3s6m_A 2 PGSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYVKKG-----------HYDGTIFHRVINGFMIQGGGFEPGL-- 63 (167)
T ss_dssp CCCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEESSEETTT--
T ss_pred CCcEEEEEeC-----CceEEEEEeCCCCcHHHHHHHHHhhhc-----------ccCCCEeEEecCCcEEEeccccCCC--
Confidence 3677777654 999999999999999999999999986 8999999999999999999987433
Q ss_pred CCCccCCCCCCCCCcCCCCCCceEEEeee-CCCCCCCcceEeecCCCCCCCCC--------ceEEeEEecChHHHHHHhc
Q 018089 82 GGESIYGLKFEDENFELKHERKGMLSMAN-AGPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 82 ~~~~~~~~~~~~e~~~~~~~~~g~~~~~~-~~~~~~~sqF~i~~~~~~~ld~~--------~~vfG~v~~g~~vl~~i~~ 152 (361)
+.+.++.+|++|.....++.+|+||||| .+|+|+||||||++.+.|+||++ |+|||+|++||+++++|++
T Consensus 64 -~~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~ 142 (167)
T 3s6m_A 64 -KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKA 142 (167)
T ss_dssp -EECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTT
T ss_pred -CCCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHc
Confidence 2345688899997655556899999999 56999999999999999999998 9999999999999999999
Q ss_pred cCCCC----CCCcccceEecccccc
Q 018089 153 VMTGD----NDCPIADVTITDCGEI 173 (361)
Q Consensus 153 ~~~~~----~~~P~~~v~I~~~~~~ 173 (361)
++++. ++.|..+|.|.++.++
T Consensus 143 ~~t~~~~~~~~~P~~~v~I~~~~il 167 (167)
T 3s6m_A 143 VKTGSKGFHQDVPNDDVVIEKAVVV 167 (167)
T ss_dssp SCBBC---CBTCBSSCCEEEEEEEC
T ss_pred CCcCCCcccCCCcCCCeEEEEEEEC
Confidence 99987 5899999999988653
No 35
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=1.8e-43 Score=293.40 Aligned_cols=145 Identities=33% Similarity=0.553 Sum_probs=130.9
Q ss_pred eeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccCCCCCCCC
Q 018089 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|++|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||++.+. +.+++|.+|+||
T Consensus 6 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE 71 (164)
T 1lop_A 6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNE 71 (164)
T ss_dssp ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCC
T ss_pred eCCCCEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCceEecCCcccCC---CcCCCCCccccc
Confidence 56999999999999999999999999876 8999999999999999999987433 456789999999
Q ss_pred CcCCCCCCceEEEeeeC-CCCCCCcceEeecCCCCCCCCC--------ceEEeEEecChHHHHHHhccCCCC----CCCc
Q 018089 95 NFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCP 161 (361)
Q Consensus 95 ~~~~~~~~~g~~~~~~~-~~~~~~sqF~i~~~~~~~ld~~--------~~vfG~v~~g~~vl~~i~~~~~~~----~~~P 161 (361)
+....++.+|+|||||. +|+|+||||||++.+.|+||++ |+|||+|++||++|++|++++++. ++.|
T Consensus 72 ~~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P 151 (164)
T 1lop_A 72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP 151 (164)
T ss_dssp CCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred cccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCc
Confidence 87644457999999975 6999999999999999999998 999999999999999999998864 4789
Q ss_pred ccceEecccccc
Q 018089 162 IADVTITDCGEI 173 (361)
Q Consensus 162 ~~~v~I~~~~~~ 173 (361)
..+|.|.+|.++
T Consensus 152 ~~~v~I~~~~v~ 163 (164)
T 1lop_A 152 KEDVIIESVTVS 163 (164)
T ss_dssp SSCCEEEEEEEC
T ss_pred CCCeEEEEEEEe
Confidence 999999999875
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-38 Score=291.90 Aligned_cols=137 Identities=25% Similarity=0.411 Sum_probs=122.0
Q ss_pred CCEEEEEEEeCCe---eeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCC
Q 018089 3 RPRCFLDISIGVE---LEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGD 79 (361)
Q Consensus 3 ~~~~~~~~~~~~~---~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~ 79 (361)
++.|.|++++.++ +.|+|+|+||++.||+||+||++||+.+ ||+|+.|||| +||||||||++ ++
T Consensus 170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G-----------fYdGt~FHRV-~gFmIQgGDp~-g~ 236 (369)
T 3rfy_A 170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH-----------FYDGMEIQRS-DGFVVQTGDPE-GP 236 (369)
T ss_dssp EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT-----------TTTTEECEEE-EEEEECCCCCC-CC
T ss_pred CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCeeeee-CCeeEecCCCC-CC
Confidence 4567777776543 6899999999999999999999999976 9999999999 99999999987 55
Q ss_pred CCC---------------------CCccCCCCCCCCCc-----CCCCCCceEEEeeeC--CCCCCCcceEeec-------
Q 018089 80 GTG---------------------GESIYGLKFEDENF-----ELKHERKGMLSMANA--GPNTNGSQFFITT------- 124 (361)
Q Consensus 80 ~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~g~~~~~~~--~~~~~~sqF~i~~------- 124 (361)
|+| +.++|+.+|++|++ .++|+++|+|||||. +|||+||||||++
T Consensus 237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~ 316 (369)
T 3rfy_A 237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP 316 (369)
T ss_dssp CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECS
T ss_pred CCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCC
Confidence 655 45788999998864 689999999999998 7999999999999
Q ss_pred CCCCCCCCCceEEeEEecChHHHHHHhc
Q 018089 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 125 ~~~~~ld~~~~vfG~v~~g~~vl~~i~~ 152 (361)
.+.|+||++|+|||+|++||++|++|++
T Consensus 317 ~~~~~LDgkytVFG~VveGmdVVdkI~~ 344 (369)
T 3rfy_A 317 SNSNILDGRYAVFGYVTDNEDFLADLKV 344 (369)
T ss_dssp CCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred CCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence 4689999999999999999999999987
No 37
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.92 E-value=1.5e-24 Score=180.04 Aligned_cols=157 Identities=29% Similarity=0.447 Sum_probs=135.9
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
.++.++.+..++..|+.+++.|+|++|+..|++++++++.......+..+.....+|....+|+|+|.||+++|+|++|+
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45667789999999999999999999999999999987766555555555555668999999999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIHERREQEKKQYRKMFQ 361 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 361 (361)
.+|++||.++|+++++|+++|.+|..+|++++|+.+|+++++++|+++ .+...+..+...+++.++++++.|++||+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 161 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 88999999999999999999999999995
No 38
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=2.4e-21 Score=154.42 Aligned_cols=116 Identities=25% Similarity=0.426 Sum_probs=111.3
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
++.++.++++|+.+++.|+|++|++.|+++++ ++|.+..+|.++|.|+.++|++++|+.+|+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 71 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAACLTKLMEFQRALDDCD 71 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHH
Confidence 45688999999999999999999999999999 888899999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
+||+++|+++++|+++|.++..+|++++|+.+|+++++++|++..++..|+.+.
T Consensus 72 ~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999888763
No 39
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.86 E-value=3e-21 Score=158.20 Aligned_cols=137 Identities=13% Similarity=0.078 Sum_probs=122.4
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+++.|+.+++.|+|++|+.+|++||++.+..... +.....|.+..+|+|+|.|+.++|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5578899999999999999999999999999987752111 1122566777899999999999999999999999
Q ss_pred HHhhc-------CCCchhHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRD-------GDDNVKAL----FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 289 ~al~~-------~p~~~ka~----~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+||++ +|++.++| +++|.++..+|++++|+.+|+++++++|+++.+...+..+++.+++.+++
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999 99999999999999999999999999999999999999999988876654
No 40
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.82 E-value=1.1e-19 Score=176.38 Aligned_cols=158 Identities=24% Similarity=0.401 Sum_probs=137.3
Q ss_pred CCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+....+..+..+..++.+|+.+++.|+|++|+.+|++|+++.+.... ...+......+....+|+|+|.||+++++|
T Consensus 257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG---LSEKESKASESFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---CCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc---CChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 35567778889999999999999999999999999999997654321 122333456777789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f 360 (361)
++|+.+|++||.++|++.++|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.++++++.|++||
T Consensus 334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 018089 361 Q 361 (361)
Q Consensus 361 ~ 361 (361)
+
T Consensus 414 ~ 414 (457)
T 1kt0_A 414 K 414 (457)
T ss_dssp -
T ss_pred h
Confidence 5
No 41
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.81 E-value=4.4e-19 Score=165.14 Aligned_cols=157 Identities=28% Similarity=0.414 Sum_probs=141.8
Q ss_pred CCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHH
Q 018089 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (361)
Q Consensus 202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (361)
....+..+..+..++.+|+.+++.|+|++|+..|++|+++.+.... ...+......+....+|+|+|.|++++|+|+
T Consensus 137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 213 (336)
T 1p5q_A 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS---FSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213 (336)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc---CChHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 4556777888999999999999999999999999999997654321 1223344567778899999999999999999
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 361 (361)
+|+.+|++||+++|++.++++++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.++++++.|++||+
T Consensus 214 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 214 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999983
No 42
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.81 E-value=2.2e-19 Score=153.70 Aligned_cols=165 Identities=25% Similarity=0.292 Sum_probs=130.0
Q ss_pred CCCcCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH
Q 018089 195 PADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 195 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~ 274 (361)
....+.+..+.++..+.+..+..+|+.++..|+|++|+..|.+++++.+...... ..............++.++|.|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~ 98 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNLNLATCY 98 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333445667888899999999999999999999999999999999654321000 00011112233458999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
.++|+|++|+.+|++++.++|++.++++++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..++++.
T Consensus 99 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 178 (198)
T 2fbn_A 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKL 178 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcC
Q 018089 355 QYRKMFQ 361 (361)
Q Consensus 355 ~~~~~f~ 361 (361)
.|++||+
T Consensus 179 ~~~~~f~ 185 (198)
T 2fbn_A 179 TFGGMFD 185 (198)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 9999985
No 43
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.78 E-value=9.9e-19 Score=139.26 Aligned_cols=115 Identities=26% Similarity=0.353 Sum_probs=103.9
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~ 287 (361)
..+.|..++++|+.+++.|+|++|+++|++||+ ++|....+|.|+|.||+++|+|++|+.+|
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------LDPSNITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 345788999999999999999999999999999 88888999999999999999999999999
Q ss_pred HHHhhcCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 288 EFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 288 ~~al~~~p~~-------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
+++|+++|++ .++++++|.++..+|++++|+.+|+++++++| ++.....|.++
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~l 125 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHHHH
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHHHh
Confidence 9999998876 46899999999999999999999999999988 45565555544
No 44
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.78 E-value=5.2e-19 Score=164.77 Aligned_cols=163 Identities=25% Similarity=0.372 Sum_probs=104.9
Q ss_pred cCCCCCchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 018089 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 198 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
...+....++.++.+..++.+|+.+++.|+|++|+.+|++|+++.+....... ..............+|+|+|.||+++
T Consensus 165 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~l~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQL-YGKYQDMALAVKNPCHLNIAACLIKL 243 (338)
T ss_dssp BTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTC-CHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhh-cccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466778899999999999999999999999999999999995542210000 00000111222335899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018089 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 278 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
++|++|+.+|+++|+++|++.++|+++|.+|..+|++++|+.+|+++++++|++..++..|..+........+++++.|+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888899999
Q ss_pred hhcC
Q 018089 358 KMFQ 361 (361)
Q Consensus 358 ~~f~ 361 (361)
+||+
T Consensus 324 ~~l~ 327 (338)
T 2if4_A 324 GIFK 327 (338)
T ss_dssp ----
T ss_pred HhhC
Confidence 9984
No 45
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3e-18 Score=135.44 Aligned_cols=117 Identities=20% Similarity=0.314 Sum_probs=111.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|+.+++.|+|++|+..|+++++ .+|.+..+|.++|.|+.++|++++|+.+++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 578899999999999999999999999999 77888899999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVAKKKI 345 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~------p~~~~~~~~l~~~~~~~ 345 (361)
++++|++..+++++|.++..+|++++|+..|+++++++ |++..++..+..+...+
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 99999999998887653
No 46
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.74 E-value=1.7e-17 Score=137.53 Aligned_cols=123 Identities=28% Similarity=0.384 Sum_probs=112.8
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|+.++..|+|++|+..|+++++ ++|.+..+|+++|.||+.+|++++|+.++++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS------------------IAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4678899999999999999999999999999 7788899999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAVAKKKIHERRE 350 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~~~~~~~ 350 (361)
++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++.. ....+..++.++++..+
T Consensus 71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987 56666666666665544
No 47
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=4.1e-17 Score=133.99 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=101.6
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
++.+..+..+|..+++.|+|++|+..|+++++ ++|.+..+|.++|.|+..+|+|++|+..|+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34578899999999999999999999999999 889999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
+|++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999765
No 48
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=8.4e-17 Score=130.24 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=115.1
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
+.+..+..+|..++..|+|++|+..|++++. .+|.+..+|.++|.|+..+|++++|+..+++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------LDHYDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3567789999999999999999999999999 8888899999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...++..+++
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998888888887777765544
No 49
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=7.5e-17 Score=131.88 Aligned_cols=124 Identities=12% Similarity=0.178 Sum_probs=112.2
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.+.+..+..+|..++..|+|++|+..|++++. .+|.+..+|.++|.|+..+|++++|+..|+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34577889999999999999999999999999 888899999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+++.++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+...++..+.
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988777766666666664443
No 50
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=6.6e-17 Score=132.43 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=102.5
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
+.+..+..+|+.+++.|+|++|+++|+++++ ++|.+..+|.++|.||.++|++++|+..+++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------VQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 3566678899999999999999999999998 8888899999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVES-FEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~-~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
+++++|+++.+++++|.+|..+|++++|... ++++++++|+++.++..+..+..
T Consensus 91 al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 91 SVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999876654 68999999999998887777654
No 51
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=6.9e-17 Score=132.30 Aligned_cols=115 Identities=16% Similarity=0.068 Sum_probs=105.8
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
+|..+..+|++++|++.|++++. ..|.....++++|.+|+++|+|++|+.+++++|+++|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 68889999999999999999998 888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.+....++..+
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999999999999998887765543
No 52
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.69 E-value=1.2e-16 Score=127.49 Aligned_cols=122 Identities=27% Similarity=0.370 Sum_probs=113.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.|+..+|++++|+..++++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 467889999999999999999999999999 77778899999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-----DGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-----~~~~~~~l~~~~~~~~~~~~ 350 (361)
+.++|++..+++++|.++..+|++++|+..|+++++++|+ +..+...+..++......++
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 78888888888877665544
No 53
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.6e-15 Score=130.95 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=111.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHH----------------HHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN----------------SSACK 274 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n----------------la~~~ 274 (361)
.+..+...|..++..|+|++|+..|+++++ .+|.+..++++ +|.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA------------------LNIDRTEMYYWTNVDKNSEISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 356788899999999999999999999999 88888888888 99999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
.++|++++|+..++++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.+.....+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988755443
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=7.2e-16 Score=156.88 Aligned_cols=124 Identities=23% Similarity=0.302 Sum_probs=93.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
+.+..+.++|+.+.+.|+|++|++.|++||+ ++|....+|+|+|.+|.++|++++|+..|++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~------------------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~ 68 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALE------------------VFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567777888888888888888888888887 6666677777777777777777777777777
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
||+++|++..+|+++|.+|..+|++++|++.|+++++++|++..++.+|+.+...+++.+++
T Consensus 69 Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777766665555
No 55
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=3e-15 Score=115.11 Aligned_cols=115 Identities=27% Similarity=0.306 Sum_probs=108.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|++++. ..|....++.++|.++..+|++++|+..++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 567889999999999999999999999999 66777889999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
+.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus 65 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999988887754
No 56
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=1e-14 Score=119.68 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=111.1
Q ss_pred hHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 018089 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~ 285 (361)
....+.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~ 68 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALG 68 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 45567889999999999999999999999999999 677778899999999999999999999
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
.+++++.++|.+..+++++|.++..+|++++|+..|+++++++|.+..++..+..+.
T Consensus 69 ~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 125 (166)
T 1a17_A 69 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125 (166)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887766663
No 57
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.62 E-value=6.9e-15 Score=115.13 Aligned_cols=123 Identities=33% Similarity=0.407 Sum_probs=114.0
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
.....+..+..+|..++..|+|++|+..|++++. ..|....++.++|.++..+|++++|+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 68 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE------------------LNPANAVYFCNRAAAYSKLGNYAGAVQD 68 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhhchHHHHHH
Confidence 3455788899999999999999999999999998 6666788999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 69 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999888776543
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.1e-15 Score=131.05 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=71.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|+|++|+..|+++++ .+|.+..++.++|.++..+|++++|+..+++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALK------------------ENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455566666666666666666666665 455555555666666666666666666666666
Q ss_pred hcCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMAL-----------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~-----------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+++|++..+++.+|.++..+ |++++|+..|+++++++|++..++..++.+...+++.+++
T Consensus 67 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence 66666666666666666555 5666666666666666665555555555555554444433
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=1.9e-15 Score=153.73 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=117.6
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.+.+..+.++|+.+.+.|+|++|+++|++|++ ++|....+|+|+|.++.++|++++|++.|+
T Consensus 40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~------------------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR------------------ISPTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34577899999999999999999999999999 888999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+||+++|++..+|+++|.+|..+|++++|++.|++|++++|++..++..|+.+...+.+..++
T Consensus 102 kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999999999999999999999999999999999999998877655544
No 60
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=1.8e-15 Score=119.18 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=92.8
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+|..+++.|++++|+..|+++++ .+|.+..+|+++|.++..+|++++|+..+++|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999 8889999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
++|++..+++.+|.++..+|++++|+..|+++++++|.+..
T Consensus 80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999999999999999999999998753
No 61
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=117.08 Aligned_cols=117 Identities=25% Similarity=0.354 Sum_probs=109.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..++++++|+..++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467899999999999999999999999998 56666789999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
+.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....
T Consensus 77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998888876543
No 62
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.60 E-value=7.1e-15 Score=115.20 Aligned_cols=120 Identities=29% Similarity=0.380 Sum_probs=110.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|++++. ..|....++.++|.++..+|++++|+..++++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 567889999999999999999999999999 66667889999999999999999999999999
Q ss_pred hhcCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 291 l~~~p~~-------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
+.++|.+ ..+++++|.++..+|++++|+..|++++++.| ++.+...+..+...+++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 9998877 89999999999999999999999999999999 6888999988888776543
No 63
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.9e-15 Score=117.62 Aligned_cols=118 Identities=31% Similarity=0.447 Sum_probs=106.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+...|..++..|+|++|+..|++++++.+ .++....++.++|.++..++++++|+..++++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---------------TPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---------------cchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 467789999999999999999999999998321 12234789999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
+.++|++..+++++|.++..+|++++|+..|+++++++|++..++..+..+..
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888877653
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=1.6e-14 Score=125.77 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=109.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
+..+...|..++..|+|++|+..|+++++ ..| .+..+++++|.|+..+|++++|+.+++++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLK------------------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 46789999999999999999999999999 555 56678899999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-------GIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-------~~~~~l~~~~~~~~~~~~~ 351 (361)
+.++|++..+++.+|.+|..+|++++|+..|+++++++|++. .++..++.+...+++.+++
T Consensus 69 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 69 IKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 999999999999999999999999999999999999999999 4566677766666655554
No 65
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.58 E-value=4.1e-15 Score=121.48 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=98.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHh
Q 018089 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL----------KGALLDTEFAM 291 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------~~Ai~~~~~al 291 (361)
.-+.++|++|++.|+++++ ++|.+..+|+|+|.++..++++ ++|+..|++||
T Consensus 12 ~~r~~~feeA~~~~~~Ai~------------------l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL 73 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence 4467899999999999999 9999999999999999999876 59999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
+++|++..+|+++|.+|..+| ++++|+.+|++|++++|++...+..+..+.+..+
T Consensus 74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence 999999999999999999885 8999999999999999999998888887766554
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=5.9e-15 Score=139.53 Aligned_cols=119 Identities=11% Similarity=0.064 Sum_probs=66.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Ai~~~~~ 289 (361)
.+..+...|..+.+.|+|++|+..|+++|+ ++|.+..+|+++|.++..+|+ +++|+.++++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------hCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 345555566666666666666666666665 455555555555555555554 5555555555
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
||.++|++..+|+++|.++..+|++++|+.+|+++++++|.+..++..++.+...+++
T Consensus 158 al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555555555555555555555555555555555544443
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=2.4e-14 Score=120.17 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=94.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHH-----
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL----- 285 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~----- 285 (361)
.+..+..+|+.++..|+|++|++.|+++++ ++|.+..++.++|.+|.++|++++|+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK------------------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467788999999999999999999999999 555555555555555555555555544
Q ss_pred -----------------------------HHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089 286 -----------------------------DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 286 -----------------------------~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 336 (361)
.+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 145 (184)
T 3vtx_A 66 VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145 (184)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence 455555666777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 018089 337 ELAVAKKKIHERREQE 352 (361)
Q Consensus 337 ~l~~~~~~~~~~~~~~ 352 (361)
.++.+...+++.+++.
T Consensus 146 ~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 8888888777766654
No 68
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.57 E-value=1.5e-14 Score=113.88 Aligned_cols=117 Identities=8% Similarity=-0.005 Sum_probs=102.3
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+|..++..|+|++|+..|+++++..+ .++....+++++|.++..+|++++|+..+++++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYP---------------NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC---------------CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567899999999999999999999998322 1122337899999999999999999999999999
Q ss_pred cCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 293 DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 293 ~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.+|++ ..+++.+|.++..+|++++|+..|+++++..|++..+...+..+...
T Consensus 68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 99999 88999999999999999999999999999999998887766666544
No 69
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=1.3e-14 Score=125.98 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=111.0
Q ss_pred HhhHHHHHhccHHHHh-----------hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC
Q 018089 210 NAVDSIKVFGNEHYKK-----------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~-----------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~ 278 (361)
..+..+..+|..+... |++++|+..|+++++ ++|....++.++|.++..+|
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER------------------VNPRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcC
Confidence 3466788899999999 999999999999999 88888999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 279 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++++|+..++++++++ +++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++.
T Consensus 133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999988888776654
No 70
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=1.6e-14 Score=136.58 Aligned_cols=119 Identities=8% Similarity=-0.032 Sum_probs=113.1
Q ss_pred HHHhhHHHHHhccHHHHhhh-HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 208 WMNAVDSIKVFGNEHYKKQD-YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~-y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
....+..+..+|..+...|+ |++|+..|+++|+ ++|.+..+|+++|.++..+|++++|+.+
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~------------------l~P~~~~a~~~~g~~~~~~g~~~eAl~~ 188 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE------------------EQPKNYQVWHHRRVLVEWLRDPSQELEF 188 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 34457888999999999997 9999999999999 8899999999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
|++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877
No 71
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.55 E-value=1.6e-14 Score=112.69 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=89.1
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL---RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka 300 (361)
..|+|++|+..|+++++ . +|....++.++|.++..+|++++|+..++++++++|++..+
T Consensus 2 ~~g~~~~A~~~~~~al~------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHS------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHH------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence 36899999999999998 6 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
++++|.++..+|++++|+..|+++++++|+++.+......+
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999998876544443
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.54 E-value=3.3e-14 Score=128.70 Aligned_cols=103 Identities=25% Similarity=0.373 Sum_probs=98.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..++.+|+.++..|+|++|+..|+++++ .+|.+..++.++|.++.++|++++|+.++++|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 367789999999999999999999999999 77888899999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
++++|++.++++++|.+|..+|++++|+..|+++++++|++
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999976
No 73
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.54 E-value=1.2e-14 Score=141.45 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=111.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
+.+..+..+|+.+++.|+|++|++.|++|++ .+|....++.++|.+|.++|++++|+.++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4577889999999999999999999999999 7788899999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
|++++|++..+++++|.+|..+|++++|++.|+++++++|++..++..++.+....
T Consensus 66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 121 (477)
T 1wao_1 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121 (477)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998884433
No 74
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=1.7e-13 Score=106.16 Aligned_cols=115 Identities=33% Similarity=0.495 Sum_probs=107.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|+|++|++.|+++++ ..|....++.++|.++..+|++++|+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56788899999999999999999999998 556667889999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...
T Consensus 71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888887654
No 75
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.53 E-value=1.6e-14 Score=118.38 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
++|.+..+++++|.+++++|++++|+..|++++.++|+++.+|+.+|.++..+|+|++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQEK 353 (361)
Q Consensus 339 ~~~~~~~~~~~~~~k 353 (361)
+.+...+++.+++.+
T Consensus 111 g~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 999999888777643
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=1.4e-13 Score=115.51 Aligned_cols=122 Identities=17% Similarity=0.118 Sum_probs=94.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc---------cCCCCc-------cchhhHHHHHHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------KEGIDE-------GKSSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~nla~~~ 274 (361)
.+..+..+|..+++.|++++|+..+.+++...+.... ...... .......|....++..+|.++
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~ 117 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVY 117 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4556666777777777777777777777664431100 000000 001135677788999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 275 ~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
.++|++++|+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 118 DSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999999999999999999999999999999999999999764
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=1.4e-13 Score=118.66 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=93.9
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~ 297 (361)
+|..+++.|+|++|+..|+++++ ++|.+..++.++|.++..+|++++|+..|+++++++|++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999 888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMA-----------------------------------LNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 298 ~ka~~~~g~~~~~-----------------------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
..+++++|.+|+. +|+|++|+.+|+++++++|+. .+...+..+.
T Consensus 122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~ 200 (208)
T 3urz_A 122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 9888888877643 356889999999999999964 4555555554
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=2.1e-13 Score=118.56 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=110.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+..+|..++..|+|++|+..|+++++ .+|....++.++|.++..+|++++|+..+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIK------------------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHH------------------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34567799999999999999999999999 788889999999999999999999999999999
Q ss_pred hcCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHER 348 (361)
Q Consensus 292 ~~~p~~~-------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~ 348 (361)
.++|++. .+++.+|.++..+|++++|+..|+++++++|+ +..++..++.+.....+.
T Consensus 104 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 104 KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999998 77999999999999999999999999999999 899999999988766655
No 79
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.49 E-value=2e-13 Score=108.19 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
++|.....+.++|.++++.|+|++|+..|++||+++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQEK 353 (361)
Q Consensus 339 ~~~~~~~~~~~~~~k 353 (361)
+.+...+++.+++.+
T Consensus 88 g~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 88 AACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHH
Confidence 999999888777643
No 80
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=3.6e-13 Score=112.35 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=106.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHH-HHhcCCH--HHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC-KLKLGDL--KGALLD 286 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~~l~~~--~~Ai~~ 286 (361)
..+..+..+|..++..|+|++|+..|+++++ ..|.+..++.++|.+ +...|++ ++|+..
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQ------------------LRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3567889999999999999999999999999 778888999999999 8899999 999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
+++++.++|++..+++.+|.++..+|++++|+..|+++++++|.+......+..+..
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998766655555443
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.48 E-value=2.5e-13 Score=116.51 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=110.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|++++. . ...+++++|.++..+|++++|+..++++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a 63 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD------------------P---HSRICFNIGCMYTILKNMTEAEKAFTRS 63 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------------------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466788999999999999999999999864 1 2468999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----------------GIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~----------------~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.++|.+..+++++|.++..+|++++|+..|++++++.|.+. .++..++.+...+++.+++.
T Consensus 64 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 64 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999999999999999999999999999877 89999999988887776664
No 82
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=1.6e-13 Score=104.47 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=96.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ------------------LDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45578899999999999999999999999 666677889999999999999999999999999
Q ss_pred hcCCC--chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Q 018089 292 RDGDD--NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 292 ~~~p~--~~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~~ 332 (361)
.++|. +..+++.+|.++..+ |++++|++.+++++...|.+.
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999 999999999999999999763
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.45 E-value=9.1e-13 Score=103.08 Aligned_cols=122 Identities=29% Similarity=0.376 Sum_probs=111.3
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+|..++..|++++|+..|+++++ ..|....++.++|.++...|++++|+..+++++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4577889999999999999999999998 5566677899999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.+|.+..+++.+|.++...|++++|+..+++++++.|.+..++..++.+....++.+++.
T Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH
Confidence 999999999999999999999999999999999999999999999998887776665553
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=5.3e-13 Score=132.43 Aligned_cols=125 Identities=11% Similarity=0.098 Sum_probs=116.2
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..++..|+|++|++.|+++++ ++|.+..++.++|.++..+|++++|+..++
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------TSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567889999999999999999999999999 777788899999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI---HERREQ 351 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~---~~~~~~ 351 (361)
++++++|++..+++++|.+|..+|++++|++.|+++++++|++..++..++.+...+ ++.+++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 999999999999999999999999999999999999999999999999999998888 665554
No 85
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.43 E-value=3.9e-13 Score=109.56 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
++|.+...++++|.+++.+|++++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+...+++..++.
T Consensus 96 g~~~~~~g~~~~A~ 109 (148)
T 2vgx_A 96 AECLLQXGELAEAE 109 (148)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 99998888777664
No 86
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=7.9e-13 Score=128.54 Aligned_cols=122 Identities=12% Similarity=0.024 Sum_probs=114.7
Q ss_pred HHHHHhccHHHHh---------hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc------
Q 018089 213 DSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL------ 277 (361)
Q Consensus 213 ~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l------ 277 (361)
..+..+|..+... |+|++|+..|+++++ ++|.+..+|+++|.+|..+
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ------------------MDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 5667788888888 999999999999999 7888889999999999999
Q ss_pred --CCHHHHHHHHHHHhhcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 278 --GDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 278 --~~~~~Ai~~~~~al~~~p---~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|++++|+..+++|++++| .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..++.
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999888777654
No 87
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=9.6e-13 Score=115.36 Aligned_cols=98 Identities=21% Similarity=0.370 Sum_probs=48.3
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444455555555555555555544 3333344445555555555555555555555555
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
++|++..+++.+|.++..+|++++|+..|+++++++
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555554
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=2.4e-12 Score=106.64 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=112.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLA------------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45678899999999999999999999998 666677889999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
..+|.+..+++.+|.++..+|++++|+..++++++++|.+..++..++.+....++.+++.
T Consensus 104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999888877666553
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.4e-13 Score=136.89 Aligned_cols=123 Identities=11% Similarity=-0.012 Sum_probs=115.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|+++++ .+|.+..+|+++|.++..+|++++|+..|++|
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 493 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAE------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEV 493 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788889999999999999999999999 88899999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++++|++..+++++|.++..+|++++ ++.|+++++++|++..++..++.+...+++.+++.
T Consensus 494 l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 494 LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999 99999999999999999999999998888777664
No 90
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=3.4e-12 Score=113.23 Aligned_cols=114 Identities=15% Similarity=0.058 Sum_probs=105.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..+++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3577889999999999999999999999999 6777788999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
++.++|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus 103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998655555443
No 91
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.1e-12 Score=127.39 Aligned_cols=123 Identities=17% Similarity=0.113 Sum_probs=115.6
Q ss_pred hhHHHHHhccHHHHhhhH-HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
.+..+..+|..++..|+| ++|++.|+++++ ++|....+|+++|.+|..+|++++|+..|++
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK------------------LEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999999999 999999999999 7888889999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------HHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMAL---------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI--------HERREQE 352 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~---------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~--------~~~~~~~ 352 (361)
+++++|+ ..+++++|.++..+ |++++|+..|+++++++|++..++..++.+...+ ++.+++.
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999 79999999999999 9999999999999999999999999999999887 6666653
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=1e-12 Score=116.79 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=97.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+...|..+++.|+|++|+..|+++++..+ .++....+++++|.|++++|+|++|+..++++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR---------------THEWAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS---------------CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 467789999999999999999999999998222 12233789999999999999999999999999
Q ss_pred hhcCCCc---hhHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 291 MRDGDDN---VKALFRQGQAYMA--------LNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 291 l~~~p~~---~ka~~~~g~~~~~--------~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
+.++|++ ..+++.+|.++.. +|++++|+..|+++++++|++..+.
T Consensus 79 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 79 IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 9998854 6799999999999 9999999999999999999987666
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.39 E-value=2.8e-12 Score=109.82 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=96.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|+|++|+..|+++++ .+|....+++++|.++..+|++++|+.++++++
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 98 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45789999999999999999999999999 777788999999999999999999999999999
Q ss_pred hcCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 292 RDGDDNV----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 292 ~~~p~~~----------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
.+.|.+. .+++++|.++..+|++++|+..|+++++++|++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9888766 9999999999999999999999999999999764
No 94
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.38 E-value=4.6e-12 Score=116.32 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=108.1
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.....|..+++.|++++|+..|++++...+. .......++.++|.++.++|++++|+..+++++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS--------------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3446699999999999999999999984321 12234466889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
+|++..+++.+|.++..+|++++|+..|+++++++|++..++..+..+...+++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998887654
No 95
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.9e-12 Score=110.26 Aligned_cols=139 Identities=15% Similarity=0.121 Sum_probs=76.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcccc----------------CCCCccc-------hhh----------
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK----------------EGIDEGK-------SSS---------- 258 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~----------------~~~~~~~-------~~~---------- 258 (361)
+..+..+|..++..|+|++|+..|++++++.+...+. .....+. ...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence 4567788899999999999999999998854322100 0000000 001
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 259 ----------------LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 259 ----------------~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
..|....++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2233444455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 323 KALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 323 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
++++++|++..++..++.+...+++.++
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 5555555555555555555554444433
No 96
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=2.2e-12 Score=106.85 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=113.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|++++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD------------------ADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC------------------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466788899999999999999999999988 45556788999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+..+|.+..+++.+|.++...|++++|+..++++++++|.+..++..++.+....++.+++.
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999888777666553
No 97
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.38 E-value=2e-12 Score=119.93 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=106.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..+...|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677788899999999999999999988 666677889999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----------GGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-----------~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.++|++..+++.+|.++..+|++++|+..|+++++++|++ ..++..++.+...+++.+++.
T Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999999999999999999999999999999999998888 788888888888877655543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.37 E-value=4.8e-13 Score=135.86 Aligned_cols=115 Identities=14% Similarity=0.010 Sum_probs=108.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|++.|++|++ ++|.+..+++++|.++.++|++++ +.+|++|
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLD------------------TFPGELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 456778899999999999999999999999 888889999999999999999999 9999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus 527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999998888633
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.37 E-value=7.3e-12 Score=109.01 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=97.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|+|++|+..|+++++..+ ..+....+++++|.++.++|+|++|+..+++++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56788999999999999999999999998322 123346789999999999999999999999999
Q ss_pred hcCCCchh---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 292 RDGDDNVK---ALFRQGQAYMA------------------LNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 292 ~~~p~~~k---a~~~~g~~~~~------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
+.+|++.. +++.+|.++.. +|++++|+..|+++++..|++..+...+
T Consensus 69 ~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 69 RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999875 89999999986 5799999999999999999987665433
No 100
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.2e-13 Score=105.48 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=81.0
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|++.|+++++ ..|....++.++|.|+.++|++++|+..++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456788889999999999999999999988 67777788899999999999999999999999
Q ss_pred hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
++++|++ ..+++++|.++..+|++++|+..+++
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999988 88889999999888888877766554
No 101
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=6.5e-12 Score=109.21 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=97.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALE------------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56677888999999999999999999988 555566777888888888888888888888888
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
..+|.+..+++.+|.++..+|++++|+..++++++++|.+..++..++.+....++.+++
T Consensus 119 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888888888888888877777777777666655444
No 102
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=2.3e-12 Score=119.74 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=99.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..+...|+|++|+..|+++++ ..|....+|.++|.++..+|++++|+..+++++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677788888888888888888888888 666677788888888888888888888888888
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------------~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.++|++..+++.+|.+|..+|++++|+..|+++++++|. +..++..++.+...+++.+..+
T Consensus 275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 888888888888888888888888888888888888876 3567777777777666555443
No 103
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.36 E-value=6.1e-13 Score=110.99 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=105.3
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+...++.++..|+|++|+..|++++. .+|....++.++|.++..+|++++|+..+++++.++
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 74 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHH------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34456667889999999999999999 777788899999999999999999999999999999
Q ss_pred CCchhHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQA-YMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 295 p~~~ka~~~~g~~-~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|++..+++.+|.+ +...|++ ++|+..|+++++++|++..++..++.+....++..++.
T Consensus 75 p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 135 (177)
T 2e2e_A 75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135 (177)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH
Confidence 9999999999999 8899999 99999999999999999999999999988887776654
No 104
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=8.8e-12 Score=110.69 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=105.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh--------cCCHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--------LGDLKGA 283 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------l~~~~~A 283 (361)
+..+..+|..+++.|+|++|+..|+++++..| .++....+++++|.|++. +|++++|
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A 116 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKA 116 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---------------CCchhHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 56789999999999999999999999999332 123567889999999999 9999999
Q ss_pred HHHHHHHhhcCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 018089 284 LLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKK 343 (361)
Q Consensus 284 i~~~~~al~~~p~~~ka~-----------------~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~ 343 (361)
+..+++++..+|++..+. +.+|.+|..+|++++|+..|+++++..|++ ..++..++.+..
T Consensus 117 ~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 117 IEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 999999999999987666 899999999999999999999999999984 568888888877
Q ss_pred HH
Q 018089 344 KI 345 (361)
Q Consensus 344 ~~ 345 (361)
.+
T Consensus 197 ~~ 198 (261)
T 3qky_A 197 AY 198 (261)
T ss_dssp HH
T ss_pred Hh
Confidence 66
No 105
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.36 E-value=3e-12 Score=118.99 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=104.3
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
..+|..+...|++++|+..|+++++ ..|. ...++.++|.++..+|++++|+..+++++.+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAH------------------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHH------------------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3458899999999999999999999 5565 6788999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+|++..+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++.
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999998888766653
No 106
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.35 E-value=9.1e-12 Score=109.29 Aligned_cols=121 Identities=20% Similarity=0.170 Sum_probs=74.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..|++++|++.|+++++ ..|....++.++|.++..+|++++|+..+++++
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALA------------------SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44566677777777788888888777777 334444555666666666666666666666666
Q ss_pred h--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 292 R--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 292 ~--~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
. .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.++
T Consensus 133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 5 5555556666666666666666666666666666666655555555555555444433
No 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.35 E-value=2.7e-12 Score=103.44 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.+|.....++++|.+++..|++++|+..+++++.++|++..+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+...+++..++.
T Consensus 93 g~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 93 AECHLQLGDLDGAE 106 (142)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 99998888776654
No 108
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=1.1e-11 Score=106.10 Aligned_cols=122 Identities=15% Similarity=0.023 Sum_probs=82.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~Ai~~~~~a 290 (361)
+..+..+|..+...|++++|++.|+++++ ..|....++.++|.++..+ |++++|+..++++
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALS------------------IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA 103 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34556667777777777777777777776 4444555667777777777 7777777777777
Q ss_pred hh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~--~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+. .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 76 55555667777777777777777777777777777777766666666666655554444
No 109
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.35 E-value=4.7e-12 Score=110.14 Aligned_cols=123 Identities=22% Similarity=0.203 Sum_probs=111.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356678899999999999999999999998 56666778999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++..++
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999999999999999999999999999999999999988777665554
No 110
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=6.6e-12 Score=107.58 Aligned_cols=125 Identities=16% Similarity=0.051 Sum_probs=113.7
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..++..|++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 67 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALK------------------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3567889999999999999999999999999 6666788999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKALK--LEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++.++|.+..+++.+|.++..+ |++++|+..|+++++ .+|.+..++..++.+....++.+++.
T Consensus 68 a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999 999999999999999 66777888999998888777666553
No 111
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=4.1e-12 Score=119.19 Aligned_cols=121 Identities=22% Similarity=0.237 Sum_probs=86.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..+.+.|++++|++.|+++++ .+|....+|.++|.++.++|++++|+..++++
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 127 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALR------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466788899999999999999999999998 55555666666777666666666666666666
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
+.++|++..++..+|.++..+|++++|+..|+++++++|++..++..++.+....++..
T Consensus 128 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666666666666666666666666666666666555444433
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.35 E-value=4.3e-12 Score=115.00 Aligned_cols=123 Identities=10% Similarity=0.049 Sum_probs=107.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF- 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~- 289 (361)
.+..+...|..+...|++++|+..|+++++ .+|.+..+++++|.++..+|++++|+..+++
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ------------------LSNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH------------------hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356678899999999999999999999999 8888889999999999999998887655554
Q ss_pred ---------------------------------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHH
Q 018089 290 ---------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGI 334 (361)
Q Consensus 290 ---------------------------------al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~ 334 (361)
++..+|++..+++.+|.++...|++++|++.|+++++++|++ ..+
T Consensus 178 ~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred chhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 466789999999999999999999999999999999999998 889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018089 335 KKELAVAKKKIHERREQ 351 (361)
Q Consensus 335 ~~~l~~~~~~~~~~~~~ 351 (361)
+..+..+...+++..++
T Consensus 258 ~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 258 RXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCCCcH
Confidence 99999998887754443
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=2.4e-12 Score=114.27 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=73.1
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.+...|..++..|+|++|+..|+++++ .+|....++.++|.++..+|++++|+..+++++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~- 65 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEA------------------KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS- 65 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHH------------------TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 455667777777777777777777776 3444444566666666666666666666666666
Q ss_pred CCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 294 ~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.|.+ ..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus 66 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence 2222 233566666666666666666666666666666666666666666555554444
No 114
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=6.5e-12 Score=117.83 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=85.2
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc-----------cCCCCccc-----hhhHHHHHHHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDEGK-----SSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~nla~~~~ 275 (361)
+..+..+|..+...|++++|+..|++++++-+.... ........ .....|....++.++|.++.
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 456677788888888888888888888773221100 00000000 01234445566666666666
Q ss_pred hcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 276 ~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus 249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666655554444
No 115
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.34 E-value=6.3e-12 Score=115.36 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=105.9
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.++.+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 357789999999999999999999999999 77778899999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP---NDGGIKKELAVA 341 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p---~~~~~~~~l~~~ 341 (361)
+.++|++..+++.+|.++..+|++++|+..|+++++++| .+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 117 (359)
T 3ieg_A 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 888888877543
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.34 E-value=7.2e-12 Score=104.68 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH----
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE---- 288 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~---- 288 (361)
..+...|..++..|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 3456677778888888888888888877 777777778888888777777776665444
Q ss_pred ------------------------------HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHH
Q 018089 289 ------------------------------FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKK 336 (361)
Q Consensus 289 ------------------------------~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~ 336 (361)
++++++|++..+++.+|.++..+|++++|+..|+++++++|+. ..++.
T Consensus 69 ~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 69 EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 4455677888899999999999999999999999999999875 56888
Q ss_pred HHHHHHHHHHHHHHH
Q 018089 337 ELAVAKKKIHERREQ 351 (361)
Q Consensus 337 ~l~~~~~~~~~~~~~ 351 (361)
.++.+...+++..++
T Consensus 149 ~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 149 TFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHHHHHCSSCHH
T ss_pred HHHHHHHHhCCCCcH
Confidence 888888777655443
No 117
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.33 E-value=7.6e-12 Score=96.69 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 018089 230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309 (361)
Q Consensus 230 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~ 309 (361)
.|++.|+++++ .+|.+..+++++|.++..+|++++|+..+++++.++|++..+++.+|.++.
T Consensus 3 ~a~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLA------------------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHT------------------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 57889999998 677778899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHH
Q 018089 310 ALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHE 347 (361)
Q Consensus 310 ~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~ 347 (361)
.+|++++|+..|+++++++|. +......+......+.+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999999999984 44555555555444443
No 118
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=9.7e-12 Score=110.23 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=108.8
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~ 296 (361)
.++..+...++|++|+..|+++++..+ ...|....++.++|.++..+|++++|+..+++++.++|.
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 75 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ceeeccCccchHHHHHHHHHHHHhccc--------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 355566678999999999999998311 025678899999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 297 ~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++..++.
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999988877766653
No 119
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=1.4e-11 Score=111.80 Aligned_cols=129 Identities=9% Similarity=-0.093 Sum_probs=106.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~Ai~~~~~ 289 (361)
.+..+.++|+.+.+.|+|++|+.+|++|+++.+... .......++.++|.+|..+ |++++|+.+|++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------------QFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 477889999999999999999999999999553220 1123467899999999995 999999999999
Q ss_pred HhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-------IKKELAVAKKKIHERREQ 351 (361)
Q Consensus 290 al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~~~l~~~~~~~~~~~~~ 351 (361)
|+.+.|.. ..++.++|.++..+|+|++|+..|++++++.|++.. ++..++.+...+++..++
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998754 578999999999999999999999999999998754 456677777666655554
No 120
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.5e-11 Score=96.42 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
.....+.++|.++++.|+|++|+..+++++.++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018089 342 KKKIHERREQE 352 (361)
Q Consensus 342 ~~~~~~~~~~~ 352 (361)
...+++..++.
T Consensus 82 ~~~~~~~~~A~ 92 (126)
T 3upv_A 82 QIAVKEYASAL 92 (126)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHHhCHHHHH
Confidence 98888776664
No 121
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.32 E-value=9e-12 Score=113.07 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=113.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVE------------------LRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356678889999999999999999999998 66777789999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------------~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.++|++..+++.+|.++..+|++++|+..|+++++++|. +..++..++.+...+++.+++.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999 7889999999988887766653
No 122
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.32 E-value=1.5e-11 Score=109.08 Aligned_cols=118 Identities=22% Similarity=0.224 Sum_probs=104.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVD------------------RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 45578899999999999999999999998 677777899999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
.++|.+..+++.+|...+..+++++|+..|+++++++|++..++..++.+...+.+
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 99999999999999444445699999999999999999999888888888776654
No 123
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=7.8e-12 Score=109.72 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=114.3
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALE------------------IDPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 477889999999999999999999999998 66677889999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK--LEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.++|.+..+++.+|.++..+|++++|+..|+++++ .+|.+..++..++.+....++.+++.
T Consensus 98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999 88888899999998887777665553
No 124
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=2e-11 Score=108.17 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=114.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..++..|+|++|+..|++++++...... ...+....++.++|.++..+|++++|+..+++
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35777889999999999999999999999984421100 01367788999999999999999999999999
Q ss_pred Hhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 290 al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++.+ +|....+++++|.++..+|++++|+..|++++++ +|....++..++.+....++.+++.
T Consensus 111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9988 5778999999999999999999999999999999 7777788889999888887766653
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.31 E-value=2.6e-11 Score=115.61 Aligned_cols=118 Identities=20% Similarity=0.218 Sum_probs=104.9
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
...|..+++.|++++|+..|++++++.+. .......++.++|.++.++|++++|+..+++++.++|
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPS--------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 44599999999999999999999983321 1112356899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
++..+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999988776654
No 126
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.8e-11 Score=118.32 Aligned_cols=107 Identities=23% Similarity=0.297 Sum_probs=99.8
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.+.+..+..+|+.+++.|+|++|+..|+++++ .+| +..++.++|.|++++|++++|+..++
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p-~~~~~~~la~~~~~~g~~~~A~~~~~ 63 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALE------------------LKE-DPVFYSNLSACYVSVGDLKKVVEMST 63 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH------------------HCC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------cCc-cHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 45788999999999999999999999999999 555 47889999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 334 (361)
++++++|++..+++.+|.++..+|++++|+..|+++++++|.+...
T Consensus 64 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 109 (514)
T 2gw1_A 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS 109 (514)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred HHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence 9999999999999999999999999999999999999999976543
No 127
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.29 E-value=3.5e-11 Score=114.64 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=107.1
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
+..+..+..+|..+++.|+|++|+..|+++++ ..|....+++++|.++..+|++++|+..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34678899999999999999999999999998 677778999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVA 341 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~ 341 (361)
+++.++|++..+++.+|.+|..+|++++|+..|+++++++|.+. .++..+..+
T Consensus 85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 777766544
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.29 E-value=1.2e-11 Score=97.78 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH------
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG------ 333 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~------ 333 (361)
.+....++.++|.+++++|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 018089 334 -IKKELAVAKKKIHERREQ 351 (361)
Q Consensus 334 -~~~~l~~~~~~~~~~~~~ 351 (361)
++..++.+...+++.+++
T Consensus 84 ~~~~~lg~~~~~~~~~~~A 102 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLA 102 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHH
Confidence 455566666555555544
No 129
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=111.65 Aligned_cols=124 Identities=19% Similarity=0.077 Sum_probs=111.8
Q ss_pred hhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
.+..+..+|..++..| ++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATT------------------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHT------------------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4567888999999999 99999999999998 5666678899999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++.+.|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++.
T Consensus 151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999888777666654
No 130
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=111.54 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=77.6
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++.+.
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALS------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 33344555555555555555555554 344455667777777777777777777777777664
Q ss_pred ---------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 295 ---------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 295 ---------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 555667777777777777777777777777777777777777777777666665554
No 131
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=2.5e-11 Score=110.18 Aligned_cols=117 Identities=13% Similarity=0.049 Sum_probs=66.3
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS--ACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla--~~~~~l~~~~~Ai~~~~~ 289 (361)
...+..+|..+.+.|++++|++.|+++++.- |.........+ .++...|++++|+..+++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------------------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQD------------------EDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------------------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4567778888899999999999999988732 22111111111 111223555555555555
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.+++.+...++
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 555555555555555555555555555555555555555555555555554444443
No 132
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=2.1e-11 Score=106.03 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=106.1
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh---------------
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--------------- 276 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------------- 276 (361)
...+..+|..+++.|+|++|+..|+++++.-|. ++....+++++|.++..
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---------------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 105 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------------HPNIDYVMYMRGLTNMALDDSALQGFFGVDRS 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTTHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---------------CCcHHHHHHHHHHHHHhhhhhhhhhhhccchh
Confidence 356888999999999999999999999983321 11233478888888876
Q ss_pred ---cCCHHHHHHHHHHHhhcCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---H
Q 018089 277 ---LGDLKGALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPNDG---G 333 (361)
Q Consensus 277 ---l~~~~~Ai~~~~~al~~~p~~~ka~-----------------~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~ 333 (361)
+|++++|+..++++++.+|++..++ +.+|.+|...|++++|+..|+++++..|+++ .
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 6799999999999999999997665 6789999999999999999999999999986 6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018089 334 IKKELAVAKKKIHERREQE 352 (361)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~ 352 (361)
++..++.+...+++..++.
T Consensus 186 a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHH
Confidence 7888888888888777664
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.28 E-value=6.4e-11 Score=92.82 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
.++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+....
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 018089 346 HERREQEK 353 (361)
Q Consensus 346 ~~~~~~~k 353 (361)
++..++..
T Consensus 99 g~~~~A~~ 106 (121)
T 1hxi_A 99 HNANAALA 106 (121)
T ss_dssp HHHHHHHH
T ss_pred CCHHHHHH
Confidence 88877653
No 134
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=4e-11 Score=93.52 Aligned_cols=102 Identities=30% Similarity=0.462 Sum_probs=94.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
...+..+|..++..|++++|+..|++++. ..|....++.++|.++..+|++++|+..+++++
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45567789999999999999999999998 556667789999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
...|.+..+++.+|.++..+|++++|+..|+++++++|.+
T Consensus 97 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999863
No 135
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.27 E-value=3.7e-11 Score=111.21 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=107.9
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
..|..+ ..|++++|+..|+++++ ..|. ...++.++|.++..+|++++|+..+++++.++
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVR------------------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHH------------------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHh-hcccHHHHHHHHHHHHH------------------hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455555 99999999999999999 6666 67899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++.+++.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999998888777664
No 136
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.25 E-value=8.4e-11 Score=86.07 Aligned_cols=83 Identities=31% Similarity=0.456 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
....++.++|.++..++++++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q 018089 342 KKK 344 (361)
Q Consensus 342 ~~~ 344 (361)
...
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 137
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=9.1e-11 Score=89.20 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKK 336 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~ 336 (361)
....+.++|.+++.+|+|++|+..++++++++|++..+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999998 66777
Q ss_pred HHHHHHHHHH
Q 018089 337 ELAVAKKKIH 346 (361)
Q Consensus 337 ~l~~~~~~~~ 346 (361)
.++.+...++
T Consensus 83 ~~~~~~~~~~ 92 (111)
T 2l6j_A 83 RLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666554
No 138
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=6e-11 Score=113.98 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=104.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|.+++..|+|++|+++|++|+++.+...... .++.....|.|+|.+|..+|++++|+.+++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~---------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ---------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG---------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc---------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 366778899999999999999999999999765322111 24455678999999999999999999999999
Q ss_pred hhcC--------CCchhHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 291 MRDG--------DDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 291 l~~~--------p~~~ka~~~~g~~~~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
+.+. +..+.++..+|.++... ++|++|+.+|+++++++|+++.++..++.+...+.
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9763 34578888898887665 47999999999999999999999988887765544
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.23 E-value=8e-11 Score=96.90 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 340 (361)
+.....+.++|.+++++|+|++|+..+++++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 018089 341 AKKKIHERREQEK 353 (361)
Q Consensus 341 ~~~~~~~~~~~~k 353 (361)
+...+++.+++.+
T Consensus 88 ~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 88 ARFDMADYKGAKE 100 (164)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHccCHHHHHH
Confidence 9998887777643
No 140
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=4.9e-11 Score=108.14 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=106.9
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
+.+..+...|+.+...|+|++|+++|.+|+++.+.. ...+....+|.|+|.+|.++|++++|+.++++
T Consensus 35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345556667888999999999999999999954322 01234578999999999999999999999999
Q ss_pred HhhcCCCc------hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDN------VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 290 al~~~p~~------~ka~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|+.+.|.. ..++.++|.+|... |++++|+..|++|+++.|.+ ..++..++.+...+++..++.
T Consensus 103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99988754 57899999999995 99999999999999998864 356777788877777666653
No 141
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=4.1e-11 Score=118.80 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
.|++++|++.|+++++ .+|....++.++|.++..+|++++|+..++++++++|++..+++++
T Consensus 2 ~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63 (568)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4789999999999998 8888889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++.
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 111 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA 111 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999998888776664
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.21 E-value=6.4e-11 Score=96.80 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------chh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-------NVK-----ALFRQGQAYMALNDVDAAVESFEKALKL-- 327 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~-------~~k-----a~~~~g~~~~~~~~~~~A~~~~~~a~~l-- 327 (361)
.....+.++|.+++++|+|++|+..|++||+++|+ +.. +|+++|.++..+|+|++|+.+|++|+++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35677899999999999999999999999999999 443 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHHHHHHHHH
Q 018089 328 -----EPNDGGIK----KELAVAKKKIHERREQE 352 (361)
Q Consensus 328 -----~p~~~~~~----~~l~~~~~~~~~~~~~~ 352 (361)
+|++..+| ..++.+...+++.+++.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl 122 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 122 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH
Confidence 99999999 99999999988877764
No 143
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=9.8e-11 Score=103.59 Aligned_cols=109 Identities=12% Similarity=0.065 Sum_probs=95.4
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..+...|+|++|++.|++++++...... ...|....++.++|.++..+|++++|+..++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345778899999999999999999999999995432100 0146788999999999999999999999999
Q ss_pred HHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 289 ~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
+++.+ +|....+++.+|.++..+|++++|+..|++++++
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998 7788999999999999999999999999999987
No 144
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.20 E-value=7.8e-11 Score=88.96 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKK 336 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~ 336 (361)
.+|.+..+++++|.+++.+|++++|+..++++++++|++..+|+.+|.+|..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 356778899999999999999999999999999999999999999999999999999999999999999874 344444
Q ss_pred HHHHH
Q 018089 337 ELAVA 341 (361)
Q Consensus 337 ~l~~~ 341 (361)
.+..+
T Consensus 82 ~l~~~ 86 (100)
T 3ma5_A 82 ELQDA 86 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.20 E-value=1.6e-11 Score=113.82 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-------
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------- 297 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~------- 297 (361)
.++|++|++.|++++. ..|....++.++|.+++++|+|++|+..|++|+.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~------------------~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~ 187 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE------------------EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE 187 (336)
T ss_dssp EEEEECCCCGGGCCHH------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH
T ss_pred EeecccccchhcCCHH------------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHH
Confidence 4566777888888887 888999999999999999999999999999999999998
Q ss_pred --------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 298 --------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 298 --------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.+++.
T Consensus 188 ~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 250 (336)
T 1p5q_A 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR 250 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 6999999999999999999999999999999999999999999998888777664
No 146
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.20 E-value=1.1e-10 Score=105.90 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=89.7
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHH
Q 018089 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~ 302 (361)
...|++++|+..|+++++ ..|.+..+++++|.++.++|++++|+..+++++.++|+++.+++
T Consensus 177 ~~~~~~~eA~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMAD------------------KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp HCTTHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCchHHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345899999999999999 67778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhhCCCCHHHHHH
Q 018089 303 RQGQAYMALNDVDA-AVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 303 ~~g~~~~~~~~~~~-A~~~~~~a~~l~p~~~~~~~~ 337 (361)
++|.++..+|++++ +.++++++++++|+++.+...
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999976 568999999999999987654
No 147
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.20 E-value=6.6e-11 Score=115.29 Aligned_cols=143 Identities=15% Similarity=0.030 Sum_probs=98.8
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc----------cccCCCCccc-----hhhHHHHHHHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC----------WEKEGIDEGK-----SSSLRKTKSQIFTNSSAC 273 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~----------~~~~~~~~~~-----~~~~~~~~~~~~~nla~~ 273 (361)
...+..+..+|..++..|++++|+..|+++++.-+.. .......... .....|....++.++|.+
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 3346666777777777777777777777777643210 0000000000 012445566778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 274 ~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++..++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888777776665554
No 148
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.19 E-value=1e-10 Score=105.97 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=106.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhH
Q 018089 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka 300 (361)
.+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+..+++++..+|++..+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 208 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALE------------------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 58889999999999999998 666778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 301 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++.+++.
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999988877766653
No 149
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.18 E-value=1.5e-10 Score=112.75 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=107.8
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
+...+..++..|.+......|.+|+.++.... ...|. ..++.++|.++..+|++++|+..+++++..+
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESI-----------NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-----------hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 34456667777777777777888888765442 23444 6789999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 295 p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++..++.
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999988887766654
No 150
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=1.7e-10 Score=108.23 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=111.6
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..++..|++++|+.+|.+|+++.+... ...+....++.++|.+|..+|++++|+..++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 208 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE-----------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQ 208 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34678889999999999999999999999999665321 0255677899999999999999999999999
Q ss_pred HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALK-----LE-PNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~-----l~-p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+|+.+.+.. ..+++++|.+|..+|++++|+.+|+++++ .+ |....++..++.+...+++.+++.
T Consensus 209 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence 999885533 36999999999999999999999999999 46 777788888888888777666553
No 151
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.18 E-value=2.9e-10 Score=91.55 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=106.7
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..++..|+|++|+.+|++++++.+.. ........++.++|.++..+|++++|+..++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467888999999999999999999999999965432 0123445789999999999999999999999
Q ss_pred HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+++.+.+.. ..+++++|.++..+|++++|+..+++++++.+.. ..+...++.+....++.+++.
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 999876543 6789999999999999999999999999884322 346667777776666655553
No 152
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.17 E-value=3.1e-10 Score=110.23 Aligned_cols=141 Identities=10% Similarity=0.017 Sum_probs=112.8
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
..+....+....+.+..+..+|+|++|+..|+++|++...... ..+|.....+.|+|.+|..+|+|++|+
T Consensus 302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg----------~~Hp~~a~~~~nLa~~y~~~g~~~eA~ 371 (490)
T 3n71_A 302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA----------DTNLYVLRLLSIASEVLSYLQAYEEAS 371 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC----------TTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4455566777778888888999999999999999996543311 246778899999999999999999999
Q ss_pred HHHHHHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHH---HHHHHHHHHHHHHH
Q 018089 285 LDTEFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGI---KKELAVAKKKIHER 348 (361)
Q Consensus 285 ~~~~~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~---~~~l~~~~~~~~~~ 348 (361)
..++++|.+ +|+-...+.++|.+|..+|+|++|+..|++|+++ -|+++.+ ..+|..++.+++.+
T Consensus 372 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 372 HYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999954 3445789999999999999999999999999985 5677654 45666677666766
Q ss_pred HHHHHHH
Q 018089 349 REQEKKQ 355 (361)
Q Consensus 349 ~~~~k~~ 355 (361)
++++...
T Consensus 452 ~~ae~~~ 458 (490)
T 3n71_A 452 RQNEFMY 458 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665433
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.16 E-value=1.8e-10 Score=91.17 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.++..+..+.++|.+++.+|+|++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+...+++..++.
T Consensus 84 ~~~~~~~~~~~~A~ 97 (137)
T 3q49_B 84 GQCQLEMESYDEAI 97 (137)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 99998887776653
No 154
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.16 E-value=1.8e-11 Score=91.73 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=48.8
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
..|..++..|+|++|+..|+++++ ..|.... ++.++|.++..+|++++|+..++++++++|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345555555555555555555555 4444444 555555555555555555555555555555
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018089 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 296 ~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
++..++++ +.+.+|+..|+++..++|++
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 55555433 34445555555555555543
No 155
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.16 E-value=2.3e-10 Score=113.18 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=107.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..+.+.|++++|++.|+++++ ..|.+..+|++++.+|.+.|++++|+..++++
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSST------------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355667788888889999999999999888 66677788999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+..+|.+..+++.+|.+|...|++++|++.|+++++++|.+..++..++.+....++.+++
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999999999999999999999998888888777766655
No 156
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.15 E-value=1.5e-10 Score=84.72 Aligned_cols=84 Identities=26% Similarity=0.323 Sum_probs=78.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++.++|++++|+..++++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467788999999999999999999999999 66777889999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHHHHHhcC
Q 018089 291 MRDGDDNVKALFRQGQAYMALN 312 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~~~~ 312 (361)
+.++|.+..+++.+|.++..+|
T Consensus 70 ~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 70 LELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998764
No 157
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=3.4e-10 Score=101.77 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=112.4
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..++..|+|++|+..|++++++...... ...+....++.++|.++..+|++++|+..++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 335677888999999999999999999999984421100 0136778899999999999999999999999
Q ss_pred HHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------------------------------
Q 018089 289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------------------------------- 327 (361)
Q Consensus 289 ~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------------------------------- 327 (361)
+++.+ +|....+++.+|.++..+|++++|+..|++++++
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 99998 7778899999999999999999999999999985
Q ss_pred ----------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 328 ----------------EPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 328 ----------------~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+|.+..++..++.+....++.+++.+
T Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566778888888888777766543
No 158
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.14 E-value=3.5e-10 Score=101.69 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=112.1
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..++..|+|++|+..|++++++...... ...+....++.++|.++..+|++++|+..+++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 136 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC----------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34667888999999999999999999999985431100 01367788999999999999999999999999
Q ss_pred HhhcC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 290 al~~~--------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++.+. |....+++.+|.++..+|++++|+..|++++++ +|....++..++.+....++.+++.
T Consensus 137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99874 667889999999999999999999999999998 6667778888888888877766654
No 159
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.5e-10 Score=110.30 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=100.7
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHH------HHHHHHHHHHHh---cCCHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS------QIFTNSSACKLK---LGDLKG 282 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~nla~~~~~---l~~~~~ 282 (361)
...+..+|..++..|++++|+..|+++++ ..|... .++.++|.++.. +|++++
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 45566778888888888888888888887 555543 389999999999 999999
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|+++.++..+..+...
T Consensus 434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (514)
T 2gw1_A 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495 (514)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877665543
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.13 E-value=4.4e-11 Score=115.65 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=101.6
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc------
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------ 297 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~------ 297 (361)
..++|++|+..|++++. ..+....++.++|.+++++++|++|+..|++||.++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~------------------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~ 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTK------------------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK 307 (457)
T ss_dssp EEEEEECCCCGGGSCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred hhhhcccCcchhhcCHH------------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH
Confidence 44567777778877777 888999999999999999999999999999999999998
Q ss_pred ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 298 ---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 298 ---------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
..+|+++|.||..+++|++|+.+|+++++++|++..++..++.+...+.+.+++.
T Consensus 308 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH
Confidence 6999999999999999999999999999999999999999999999888777764
No 161
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.13 E-value=3.8e-10 Score=111.56 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=93.1
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc-----------cCCCCccc-----hhhHHHHHHHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDEGK-----SSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~nla~~~~ 275 (361)
+..+..+|..+.+.|++++|++.|+++++..+.... ........ .....|.+..+|.+++.++.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 556667777777777777777777777663221000 00000000 00133445567778888888
Q ss_pred hcCCHHHHHHHHHHHhhc------CCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 276 KLGDLKGALLDTEFAMRD------GDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 276 ~l~~~~~Ai~~~~~al~~------~p~~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
+.|++++|+..+++++++ +|++ ..+|..+|.++...|++++|+..|+++++++|++..++..++.+....++.
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 888888888888888776 5554 677888888888888888888888888888888888888888877777666
Q ss_pred HHH
Q 018089 349 REQ 351 (361)
Q Consensus 349 ~~~ 351 (361)
+++
T Consensus 567 ~~A 569 (597)
T 2xpi_A 567 GLA 569 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.11 E-value=2.4e-10 Score=97.09 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=93.6
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch---
Q 018089 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV--- 298 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~--- 298 (361)
....++|+.|.+.|..... ..+.....+.++|.+++..|+|++|+..+++++.+.|.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 75 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDE------------------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD 75 (198)
T ss_dssp --------CCCSGGGCCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC
T ss_pred hhhhhhccccCchhhCCHH------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc
Confidence 3344555555555555444 6667788999999999999999999999999999999887
Q ss_pred -------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 299 -------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 299 -------------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.+++++|.++..+|++++|+.+++++++++|.+..++..++.+...+++.+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH
Confidence 899999999999999999999999999999999999999999998888777664
No 163
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=3.1e-10 Score=102.66 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=92.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+.+|+++++++.... ...+....+++|+|.+|.++|+|++|+.++++|
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456789999999999999999999999998654320 134567789999999999999999999999999
Q ss_pred hhcCCCc------hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhC
Q 018089 291 MRDGDDN------VKALFRQGQAYMALN-DVDAAVESFEKALKLE 328 (361)
Q Consensus 291 l~~~p~~------~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~ 328 (361)
+.+.+.. +.+++++|.+|..+| ++++|+.+|++|+.+.
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9876543 789999999999999 5799999999999874
No 164
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.09 E-value=5e-10 Score=102.17 Aligned_cols=108 Identities=13% Similarity=0.033 Sum_probs=89.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..+.. |+|++|+++|++|+++.+... .......++.++|.+|.++|+|++|+.+++++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777888999988 999999999999998553210 11234678999999999999999999999999
Q ss_pred hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
+.+.|.+ ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus 182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 9886543 3588889999999999999999999999 999754
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.09 E-value=6.2e-11 Score=89.75 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAV 340 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~ 340 (361)
...++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHH-HHHHHHH
Q 018089 341 AKKKI-HERREQE 352 (361)
Q Consensus 341 ~~~~~-~~~~~~~ 352 (361)
+...+ ++.+++.
T Consensus 85 ~~~~~~~~~~~A~ 97 (112)
T 2kck_A 85 ALRYIEGKEVEAE 97 (112)
T ss_dssp HHTTCSSCSHHHH
T ss_pred HHHHHhCCHHHHH
Confidence 98887 6665553
No 166
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.09 E-value=2.5e-10 Score=104.14 Aligned_cols=128 Identities=12% Similarity=-0.032 Sum_probs=97.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+...|+.+...|+|++|+.+|++|+++..... .......++.++|.+|.. |++++|+.++++|
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG------------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 456777888888888899999999999888543210 122356789999999998 9999999999999
Q ss_pred hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~~~~~ 351 (361)
+.+.|.. ..++.++|.+|..+|+|++|+..|++++++.|.+. .++..++.+...+++..++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9887643 67899999999999999999999999999877543 2444444554444444443
No 167
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.08 E-value=7.5e-10 Score=86.50 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
.+.....+.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 018089 340 VAKKKIHERREQE 352 (361)
Q Consensus 340 ~~~~~~~~~~~~~ 352 (361)
.+...+++.+++.
T Consensus 92 ~~~~~~~~~~~A~ 104 (133)
T 2lni_A 92 AALEAMKDYTKAM 104 (133)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHHhhHHHHH
Confidence 9988887766654
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=1.1e-09 Score=108.69 Aligned_cols=119 Identities=6% Similarity=-0.086 Sum_probs=112.1
Q ss_pred HHhhHHHHHhccHHHHhhh----------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC
Q 018089 209 MNAVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~ 278 (361)
++....|..+|..+.+.++ |++|++.|.++++ .+|.+..+|.+++.+..+++
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCS
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcc
Confidence 4456788889999999888 9999999999999 89999999999999999999
Q ss_pred --CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 279 --DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 279 --~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
+|++|++.|+++++++|.+..||+.++.++..++ .+++|+++++++++++|.|..+|..++.+...+
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 7799999999999999999999999999999999 999999999999999999999999999998775
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=7.2e-10 Score=93.55 Aligned_cols=129 Identities=10% Similarity=0.027 Sum_probs=105.0
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+.+|++++++.... ...+....++.++|.++..+|++++|+..++++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS------------GDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46778899999999999999999999999976533 135567889999999999999999999999999
Q ss_pred hhc---CC----CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CH----HHHHHHHHHHHHHHHHHHH
Q 018089 291 MRD---GD----DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DG----GIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~---~p----~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~----~~~~~l~~~~~~~~~~~~~ 351 (361)
+.+ .+ ....+++++|.++..+|++++|+..+++++++.+. +. .++..++.+....++..++
T Consensus 93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 988 33 34678999999999999999999999999987432 22 2346667666666655554
No 170
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=6.9e-10 Score=104.01 Aligned_cols=133 Identities=15% Similarity=0.022 Sum_probs=107.9
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..++..|+++.|+.+|++|+++.+... ...+....++.++|.+|..+|++++|+..++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 206 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-----------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLE 206 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44677888899999999999999999999998664320 0134567889999999999999999999999
Q ss_pred HHhhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALK-----LEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~-----l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+|+.+.+ ....+++++|.+|..+|++++|+..|+++++ .+|....+...++.+...+++.+++.
T Consensus 207 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 9998643 2357889999999999999999999999999 77777788888888888777666653
No 171
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=1.3e-09 Score=102.16 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=96.8
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..+...|+|++|+++|++|+++.+.. ...+....++.|+|.+|..+|++++|+.++++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI------------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 457778899999999999999999999999965432 12335677899999999999999999999999
Q ss_pred Hhh-----cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 290 AMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 290 al~-----~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
++. .+|....+++.+|.++..+|++++|+..+++++++.+.
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999 88888999999999999999999999999999999653
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.07 E-value=7e-10 Score=90.96 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD------------------GDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~------------------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~ 323 (361)
..+..+.++|..+++.|+|++|+..|++||.+ +|.+..+|+++|.+|..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35678899999999999999999999999999 788889999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 324 ALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 324 a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+++++|.+..++..++.+...+++..++..
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 999999999999999999999888777643
No 173
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.07 E-value=1.1e-09 Score=102.54 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=96.0
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..+...|+|++|+++|++|+++.+.. ...+....++.|+|.+|..+|++++|+.+++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE------------KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3456788899999999999999999999999966432 1244566789999999999999999999999
Q ss_pred HHhh-----cC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 289 FAMR-----DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 289 ~al~-----~~-p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
+|+. .+ |....+++++|.++..+|++++|+..+++++++.+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999 56 88899999999999999999999999999999854
No 174
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.07 E-value=1e-09 Score=81.87 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k-a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
.+++|.+++.+|++++|+..+++++..+|++.. +++.+|.+|..+|++++|+..|+++++++|++..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 367899999999999999999999999999999 999999999999999999999999999999999887
No 175
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=4.7e-10 Score=101.47 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=100.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+..+|..++..++|++|+.+|++++.+.... . .......++.++|.+|..+|++++|+.++++|+
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~-------~-----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-------I-----DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-------S-----CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-------c-----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445568999999999999999999999843211 0 011345689999999999999999999999999
Q ss_pred h-------cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH
Q 018089 292 R-------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHE 347 (361)
Q Consensus 292 ~-------~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~ 347 (361)
. ..+....+++++|.+|..+|+|++|+.++++++++.+.. ..++..++.+...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 4 223346799999999999999999999999999987654 6788889988888774
No 176
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.06 E-value=5.5e-10 Score=90.95 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=88.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.++..+|++++|+..++++
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356678899999999999999999999999 67777889999999999999999999999999
Q ss_pred hhcCCCchhHHHHHH--HHHHhcCCHHHHHHHHHHHHhh
Q 018089 291 MRDGDDNVKALFRQG--QAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 291 l~~~p~~~ka~~~~g--~~~~~~~~~~~A~~~~~~a~~l 327 (361)
+.++|.+..++..++ ..+..+|++++|+..+.++..+
T Consensus 108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999998885554 4488899999999999987665
No 177
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.06 E-value=4.5e-10 Score=102.42 Aligned_cols=118 Identities=11% Similarity=0.073 Sum_probs=74.5
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
+..+...|..+...|++++|...|+++++ ..|.... +|.+++.++.++|++++|+..+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLA------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44567777788888888888888888887 2233232 5666666666666666666666666
Q ss_pred hhcCCCchhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDNVKALFRQGQAYM-ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 291 l~~~p~~~ka~~~~g~~~~-~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
++.+|.+..+|...+.... .+|++++|+..|+++++++|++..++..++.+...+++
T Consensus 161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 218 (308)
T 2ond_A 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 218 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 6666666555554444422 25666666666666666666666666666555544433
No 178
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=7.4e-10 Score=100.15 Aligned_cols=128 Identities=16% Similarity=0.080 Sum_probs=98.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+...|..+...|+|++|+.+|++++.+..... .......+++++|.+|..+|+|++|+.++++|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455677778888889999999998887443210 111246689999999999999999999999999
Q ss_pred ---hcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH
Q 018089 292 ---RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 292 ---~~~p~~----~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~~~~~~~~~~~~ 351 (361)
...|++ ..+++++|.+|..+|+|++|+.++++++++.+. -..++..++.+...+++.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 445543 379999999999999999999999999988643 156778888888777666555
No 179
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.05 E-value=5.2e-10 Score=105.25 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=107.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..++..|+|++|+..|++++++.+. .......++.++|.+|..+|++++|+..+++
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--------------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc--------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45778889999999999999999999999993211 1223456899999999999999999999999
Q ss_pred Hhhc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH
Q 018089 290 AMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 290 al~~------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~~~~ 347 (361)
++.+ +|....+++.+|.+|..+|++++|+..|++++++ .|....++..++.+....++
T Consensus 112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 9988 6778899999999999999999999999999999 55566788888888888777
No 180
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.05 E-value=1.9e-09 Score=82.01 Aligned_cols=90 Identities=20% Similarity=0.161 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
.+..+.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..++++++++|.+..++..++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 018089 343 KKIHERREQE 352 (361)
Q Consensus 343 ~~~~~~~~~~ 352 (361)
..+++..++.
T Consensus 83 ~~~~~~~~A~ 92 (118)
T 1elw_A 83 EFLNRFEEAK 92 (118)
T ss_dssp HHTTCHHHHH
T ss_pred HHHhhHHHHH
Confidence 8877766654
No 181
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=1.2e-09 Score=88.26 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-Cchh
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMRDG-D-DNVK 299 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Ai~~~~~al~~~-p-~~~k 299 (361)
......+.+.|.+.+. .++.+..+.+++|.|+.+.+ +.++++..++.+++.+ | ++.+
T Consensus 11 ~~~l~~~~~~y~~e~~------------------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd 72 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD 72 (152)
T ss_dssp HHHHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence 3455667777888776 44566788999999999988 7779999999999998 7 6799
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 300 a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
++|++|.+|+.+++|++|.++++++++++|+|..+......++.++.+
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888776643
No 182
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.03 E-value=4.2e-09 Score=81.58 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
..+.....+..+|.++...+++++|+..+++++..+|++..+++.+|.++..+|++++|+..++++++++|.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+...+++..++.
T Consensus 87 ~~~~~~~~~~~~A~ 100 (131)
T 2vyi_A 87 GLALSSLNKHVEAV 100 (131)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHhCCHHHHH
Confidence 99988877766654
No 183
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=3e-09 Score=94.69 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=61.4
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDT 287 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~ 287 (361)
+..+..+|..++..+++++|+.+|+++++ +....+++++|.++.. .+++++|+.++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 65 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFY 65 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHH
Confidence 45566677777777777777777777755 1122345555555555 55555555555
Q ss_pred HHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 288 EFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
+++++++ ++.+++.+|.+|.. .+++++|+.+|+++++++ +..++..++.+...
T Consensus 66 ~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 66 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence 5555553 45555555555555 555555555555555542 44555555554443
No 184
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.00 E-value=1.5e-09 Score=101.42 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=107.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+.+|++++++.+.. ...+....++.++|.++..+|++++|+..++++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 35567889999999999999999999999965432 023345668999999999999999999999999
Q ss_pred hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~ 351 (361)
+.+.|.. ..+++.+|.++..+|++++|+..|++++++.+.. ..++..++.+...+++.+++
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9887655 7899999999999999999999999999986644 55777778777777666554
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.00 E-value=3.4e-09 Score=82.74 Aligned_cols=87 Identities=20% Similarity=0.156 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELA 339 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~ 339 (361)
.++++|.+++..|+|++|+..+++++..+|++. .+++.+|.++..+|++++|+..|+++++++|++ +.++..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 468899999999999999999999999999988 899999999999999999999999999999999 88899999
Q ss_pred HHHHHHHHHHHHH
Q 018089 340 VAKKKIHERREQE 352 (361)
Q Consensus 340 ~~~~~~~~~~~~~ 352 (361)
.+...+++..++.
T Consensus 84 ~~~~~~g~~~~A~ 96 (129)
T 2xev_A 84 LSQYGEGKNTEAQ 96 (129)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHH
Confidence 9988877766654
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.99 E-value=2.4e-10 Score=105.99 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.+.++|..+++.|+|++|+.+|+++|+ ++|.+..+|+++|.+|..+|++++|+.++++++++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLT------------------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678899999999999999999999999 78888999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089 294 GDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 294 ~p~~~ka~~~~g~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~ 334 (361)
+|++..++..++.+ ....+..+++...|++++.+.|+++..
T Consensus 294 ~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 99999999999998 445667888999999999999987643
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.2e-09 Score=84.59 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
..+.....++.+|.+++..|+|++|+..+++++.++|++ ..+++++|.++..+|++++|+..|+++++++|.+..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 345567889999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018089 336 KELAVAKKKIHERREQE 352 (361)
Q Consensus 336 ~~l~~~~~~~~~~~~~~ 352 (361)
..++.+...+++..++.
T Consensus 103 ~~~a~~~~~~~~~~~A~ 119 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAV 119 (148)
T ss_dssp HHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 99999998888776654
No 188
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.99 E-value=1.6e-09 Score=97.80 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=102.1
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+..+...|..++..|+|++|+..|+++++.-+. .......++.++|.++..+|++++|+..+++++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc--------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788999999999999999999999994211 122346789999999999999999999999999
Q ss_pred hc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHH
Q 018089 292 RD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHE 347 (361)
Q Consensus 292 ~~------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~------~~~~~l~~~~~~~~~ 347 (361)
.+ .|....+++.+|.++..+|++++|+..+++++++.|... .++..++.+....++
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 87 455688999999999999999999999999999876542 367777777777666
No 189
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.99 E-value=1.8e-08 Score=91.00 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=106.2
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
......+...+..++..|+|++|++.|.++++..+. ..........+.++|.++..+|++++|+..++
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY------------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELK 139 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC------------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC------------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 345667788899999999999999999999984321 11334456667889999999999999999999
Q ss_pred HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKAL---KLEPNDG----GIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~---~l~p~~~----~~~~~l~~~~~~~~~~~~~~ 352 (361)
+|+.+.+.. ..+++.+|.+|..+|++++|+..|++++ +..|.+. .++.+++.+...+++.+++.
T Consensus 140 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 999876543 5699999999999999999999999999 5566654 57778888877777666654
No 190
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.97 E-value=5.8e-09 Score=94.98 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHhh-c
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDL-------KGALLDTEFAMR-D 293 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~-------~~Ai~~~~~al~-~ 293 (361)
+.|+..|++++. ..|.++.+|+++|..+.. +|++ ++|+..+++|++ +
T Consensus 33 ~~a~~~~~~al~------------------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~ 94 (308)
T 2ond_A 33 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 94 (308)
T ss_dssp HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence 789999999999 889999999999999874 5886 999999999999 7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-IKKELAVAKKKIHERREQ 351 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~~l~~~~~~~~~~~~~ 351 (361)
+|++..+|..+|.++..+|++++|...|+++++++|.+.. ++..++.+..+.++..++
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999999999999886 899999888777766554
No 191
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.97 E-value=5.9e-09 Score=99.69 Aligned_cols=125 Identities=12% Similarity=0.075 Sum_probs=99.7
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
+....+....+.+......|+|++|+..|+++|++...... ..+|.....+.|+|.+|..+|+|++|+..
T Consensus 293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg----------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 362 (433)
T 3qww_A 293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE----------DSNVYMLHMMYQAMGVCLYMQDWEGALKY 362 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC----------TTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC----------hhchHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 33334455555566666678999999999999996543311 24677889999999999999999999999
Q ss_pred HHHHhhc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 018089 287 TEFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVA 341 (361)
Q Consensus 287 ~~~al~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~~ 341 (361)
++++|.+ +|+-...++++|.+|..+|+|++|+..|++|+++ -|+++.+......+
T Consensus 363 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 363 GQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 9999954 4455789999999999999999999999999986 57888776655544
No 192
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.97 E-value=2.9e-09 Score=99.44 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=108.3
Q ss_pred hhHHHHHhccHHHHhhh--------------------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQD--------------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~--------------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 270 (361)
.+..+..+|..++..|+ |++|+..|.+++++.... ...+....++.++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l 193 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------GDRAAQGRAFGNL 193 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------cCcHHHHHHHHHH
Confidence 35678899999999999 999999999999865432 1256677899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCch------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 018089 271 SACKLKLGDLKGALLDTEFAMRDGDDNV------KALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKEL 338 (361)
Q Consensus 271 a~~~~~l~~~~~Ai~~~~~al~~~p~~~------ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l 338 (361)
|.++..+|++++|+..+++++.+.+... .+++.+|.++..+|++++|+..|++++++.|.. ..++..+
T Consensus 194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 273 (406)
T 3sf4_A 194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273 (406)
T ss_dssp HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence 9999999999999999999998876554 399999999999999999999999999988765 5677777
Q ss_pred HHHHHHHHHHHHH
Q 018089 339 AVAKKKIHERREQ 351 (361)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (361)
+.+....++..++
T Consensus 274 a~~~~~~g~~~~A 286 (406)
T 3sf4_A 274 GNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCcHHHH
Confidence 7777766655554
No 193
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=1.4e-09 Score=99.20 Aligned_cols=122 Identities=7% Similarity=-0.082 Sum_probs=111.0
Q ss_pred HHHhhHHHHHhccHH----HHh---hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 208 WMNAVDSIKVFGNEH----YKK---QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~----~~~---g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
.++....+..++..+ ... ++++++++.+.++++ .+|.+..+|.+++.+..+++.+
T Consensus 99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~------------------~~pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS------------------SDPKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCT
T ss_pred CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhccc
Confidence 344566777778888 555 789999999999999 8999999999999999999999
Q ss_pred H--HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 281 K--GALLDTEFAMRDGDDNVKALFRQGQAYMALND------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 281 ~--~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
+ ++++.++++|+.+|.|..||..++.++..+++ ++++++++++++.++|+|..+|..++.+....+.
T Consensus 161 ~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 161 NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 9 99999999999999999999999999999998 9999999999999999999999999998877654
No 194
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.97 E-value=2.5e-09 Score=100.62 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=105.6
Q ss_pred HHhhHHHHHhccHHHHhhh-----------------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQD-----------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS 271 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~-----------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla 271 (361)
...+..+..+|..+...|+ |++|+++|++++++.+.. ...+....++.++|
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la 230 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL------------GDRGAQGRACGNLG 230 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHH
Confidence 3456678889999999999 999999999999865432 12355677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCchh------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 018089 272 ACKLKLGDLKGALLDTEFAMRDGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELA 339 (361)
Q Consensus 272 ~~~~~l~~~~~Ai~~~~~al~~~p~~~k------a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~ 339 (361)
.++..+|++++|+..+++++.+.+.... +++.+|.+|..+|++++|+..|++++++.|.. ..++..++
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999988775544 89999999999999999999999999988754 45667777
Q ss_pred HHHHHHHHHHHH
Q 018089 340 VAKKKIHERREQ 351 (361)
Q Consensus 340 ~~~~~~~~~~~~ 351 (361)
.+....++..++
T Consensus 311 ~~~~~~g~~~~A 322 (411)
T 4a1s_A 311 NTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHcCCHHHH
Confidence 777666655554
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.96 E-value=1.7e-10 Score=112.09 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=91.9
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..+++.|+|++|++.|++|++ ++|....+++++|.+|..+|++++|+..+++
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3477888999999999999999999999999 6777888999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCC
Q 018089 290 AMRDGDDNVKALFRQGQA--YMALNDVDAAVESFE-----------KALKLEPND 331 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~--~~~~~~~~~A~~~~~-----------~a~~l~p~~ 331 (361)
|++++|++..++..++.+ +..+|++++|++.++ ++++++|..
T Consensus 100 al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 100 VVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999 889999999999999 888888764
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=4.5e-09 Score=84.43 Aligned_cols=108 Identities=20% Similarity=0.150 Sum_probs=91.5
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+.+|++++++.+... ..+....++.++|.++..+|++++|+..++++
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346788899999999999999999999999664320 22345778999999999999999999999999
Q ss_pred hhcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 291 MRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 291 l~~~p------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
+.+.+ ....+++.+|.++..+|++++|+..+++++++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 97643 23678999999999999999999999999987643
No 197
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.96 E-value=5.8e-09 Score=92.74 Aligned_cols=109 Identities=23% Similarity=0.110 Sum_probs=67.2
Q ss_pred hHHHHHhccHHHH----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHH
Q 018089 212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGA 283 (361)
Q Consensus 212 a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A 283 (361)
+..+..+|..+.. .+++++|+.+|+++++ .. ...+++++|.+|.. .+++++|
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~------------------~~--~~~a~~~lg~~~~~g~~~~~~~~~A 97 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD------------------LN--YSNGCHLLGNLYYSGQGVSQNTNKA 97 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------TT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH------------------CC--CHHHHHHHHHHHhCCCCcccCHHHH
Confidence 4456667777777 7777777777777766 21 34556666666666 6666666
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 284 LLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 284 i~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
+.++++++..+ ++.+++++|.+|.. .+++++|+.+|+++++++ +..+...++.+...
T Consensus 98 ~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 98 LQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 66666666653 55666666666666 666666666666666654 34455555554443
No 198
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=5.9e-09 Score=79.98 Aligned_cols=90 Identities=28% Similarity=0.340 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
...++.++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|.+..++..++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 018089 343 KKIHERREQE 352 (361)
Q Consensus 343 ~~~~~~~~~~ 352 (361)
...++.+++.
T Consensus 88 ~~~~~~~~A~ 97 (125)
T 1na0_A 88 YKQGDYDEAI 97 (125)
T ss_dssp HHTTCHHHHH
T ss_pred HHhcCHHHHH
Confidence 8777665553
No 199
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.95 E-value=2e-09 Score=103.33 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=98.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDLKGALLDTE 288 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~~~Ai~~~~ 288 (361)
.+..+.++|..++..|+|++|+.+|++++++.+..... ..+....++.++|.+++++ ++|++|+.+|+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ 162 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP----------YRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS----------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc----------cchhhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 35567889999999999999999999999965533211 1112345678888777665 47999999999
Q ss_pred HHhhcCCCchhHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQAYMA---LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~~~~---~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
+|++++|+++.+++.+|.++.. .+++++|++.|+++++++|.+..++..++.....
T Consensus 163 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 9999999999999999988654 5677899999999999999999888887755433
No 200
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=6.2e-09 Score=89.60 Aligned_cols=134 Identities=16% Similarity=0.055 Sum_probs=98.8
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh--------hccccCCC--Cccc-----hhhHHHHHHHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--------ICWEKEGI--DEGK-----SSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~--------~~~~~~~~--~~~~-----~~~~~~~~~~~~~nla~~~ 274 (361)
..+..+..+|..++..+++++|+.+|+++++.-. ........ +.+. .....+..+.+++++|.+|
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVL 95 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3466677778888888888888888887765311 00011100 0110 1123456678899999999
Q ss_pred Hh----cCCHHHHHHHHHHHhhcCC--CchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 275 LK----LGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 275 ~~----l~~~~~Ai~~~~~al~~~p--~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
.. .+++++|+.++++|++..+ .++.+++++|.+|.. .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 88 8899999999999999988 458999999999998 88999999999999998 6777788888887654
No 201
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.94 E-value=1.8e-08 Score=92.60 Aligned_cols=117 Identities=6% Similarity=-0.094 Sum_probs=106.6
Q ss_pred hhHHHHHhccHHHHhhh----------HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC--
Q 018089 211 AVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-- 278 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-- 278 (361)
..+.+...+..+...+. +.+++..+.+++. .+|.+..+|++++.+...++
T Consensus 63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHhccCcc
Confidence 45667777777776655 7899999999998 89999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 018089 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 279 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 345 (361)
.+++++..|++++.++|.|..||..++.+...++. ++++++++.++++.+|.|..+|..+..+...+
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 49999999999999999999999999999999998 69999999999999999999999999988777
No 202
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.94 E-value=2.6e-09 Score=96.48 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=107.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|++++|+..|++++++.+.. ...+....++.++|.++..+|++++|+..++++
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567888999999999999999999999965432 023345668999999999999999999999999
Q ss_pred hhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.+.+.. ..+++.+|.++..+|++++|+..+++++++.+.. ..++..++.+....++.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9887655 7899999999999999999999999999986643 346777888877777666653
No 203
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=3.1e-09 Score=95.79 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
....+.++|.+++.+|+|++|+..+++++.++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018089 343 KKIHERREQEK 353 (361)
Q Consensus 343 ~~~~~~~~~~k 353 (361)
..+++.+++.+
T Consensus 83 ~~~g~~~~A~~ 93 (281)
T 2c2l_A 83 LEMESYDEAIA 93 (281)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 88887776643
No 204
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.94 E-value=4e-09 Score=81.82 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIK 335 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-------~~~~ 335 (361)
....+.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|++++++.|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999999877 8888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018089 336 KELAVAKKKIHERREQE 352 (361)
Q Consensus 336 ~~l~~~~~~~~~~~~~~ 352 (361)
..++.+...+++..++.
T Consensus 83 ~~la~~~~~~~~~~~A~ 99 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAI 99 (131)
T ss_dssp HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhccHHHHH
Confidence 88888888777666653
No 205
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=7.5e-09 Score=92.73 Aligned_cols=108 Identities=11% Similarity=-0.016 Sum_probs=92.9
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..|..+++.++|++|+.++++++... ++ ....+++++|.++..+|++++|+.++++++.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-----------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-----------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 67888999999999999999999876611 22 2346899999999999999999999999996
Q ss_pred cC--CC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 293 DG--DD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 293 ~~--p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
.. |. ...+++++|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 200 g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 200 SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 55 65 6789999999999999999999999999999999 87777664
No 206
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=6.1e-09 Score=94.96 Aligned_cols=121 Identities=7% Similarity=-0.154 Sum_probs=110.8
Q ss_pred HHhhHHHHHhccHHHHhh--hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH----Hhc---CC
Q 018089 209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKL---GD 279 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l---~~ 279 (361)
++....+..+|..+...+ ++++|+..+.++|. .+|.+..+|+.|+.+. ..+ ++
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------------------~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL------------------DNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------------------HCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH------------------HCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 345677888899999888 99999999999999 8899999999999999 777 89
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD--AAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~--~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
+++++..|+++|..+|.+..+|+.++.++..++.++ ++++.++++++++|.|-.+|.....+...+..
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999998 99999999999999999999988887766543
No 207
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=3.3e-09 Score=91.31 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=89.9
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG----DLKGALLDTEFAMRD 293 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~----~~~~Ai~~~~~al~~ 293 (361)
....++..|..-.-...+.+|+.++... ....++.+++++|.+|.. + ++++|+.++++|+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a-------------~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~- 81 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKA-------------AAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE- 81 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------HHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-
Confidence 3445566666665566788888877654 555677889999999988 7 89999999999965
Q ss_pred CCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKK 344 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~ 344 (361)
+.++.+++++|.+|.. .+++++|+.+|+++++..|. ++.+...|+.+...
T Consensus 82 -~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 82 -AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp -TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 4689999999999988 88999999999999999873 47888888888766
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=8.4e-09 Score=102.21 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=100.9
Q ss_pred hccHHHHhhhH-HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC----------HHHHHHH
Q 018089 218 FGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLD 286 (361)
Q Consensus 218 ~G~~~~~~g~y-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~Ai~~ 286 (361)
......+.++| ++|++.|.++|. .+|....+|++++.+...+++ +++++..
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~------------------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~ 95 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILG------------------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGF 95 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHH
Confidence 33344455555 578999999999 899999999999999999998 9999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
+++++..+|.+..+|+.++.++..++ ++++|+++++++++++|.|-.+|...+.+...+.
T Consensus 96 ~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence 99999999999999999999999999 7799999999999999999999999999888776
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.89 E-value=1.4e-09 Score=88.75 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=67.5
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhH----------HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDY----------KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~ 274 (361)
.+..+..++.+.+.|..+...+++ ++|+..|++||+ ++|....+|+|+|.+|
T Consensus 29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHH
Confidence 334455688899999999998876 599999999999 9999999999999999
Q ss_pred HhcC-----------CHHHHHHHHHHHhhcCCCch
Q 018089 275 LKLG-----------DLKGALLDTEFAMRDGDDNV 298 (361)
Q Consensus 275 ~~l~-----------~~~~Ai~~~~~al~~~p~~~ 298 (361)
..+| ++++|+.+|++||+++|++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9985 89999999999999999874
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.88 E-value=2.4e-08 Score=95.54 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=98.8
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+......-..+.++|+|++|++.|+++|+..... ....+|.....+.|+|.+|..+|+|++|+..++++|
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~----------lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSER----------LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCC----------CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCc----------CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4445555666778999999999999999843222 112567788999999999999999999999999999
Q ss_pred hc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHH
Q 018089 292 RD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 292 ~~--------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~~~~~~ 345 (361)
.+ +|+-...++++|.+|..+|++++|+..|++|+++ -|+++.+...+..+....
T Consensus 357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 54 3445789999999999999999999999999986 578887766655444433
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.88 E-value=1.8e-08 Score=76.47 Aligned_cols=84 Identities=20% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 018089 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~-------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 336 (361)
+.-++.+|..++++++|..|+.++++|+... +....++..+|.++..+|+++.|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3457899999999999999999999999853 356789999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 018089 337 ELAVAKKKIHE 347 (361)
Q Consensus 337 ~l~~~~~~~~~ 347 (361)
++...+..+..
T Consensus 85 n~~~~~~~~~~ 95 (104)
T 2v5f_A 85 NLKYFEYIMAK 95 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 88877665543
No 212
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=3e-08 Score=91.65 Aligned_cols=113 Identities=11% Similarity=-0.002 Sum_probs=102.4
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCc
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~~~p~~ 297 (361)
...+.+....++|++.+.++|. ++|....+|+.++.+...++ .+++++..++++|..+|.+
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~------------------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVR------------------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS 122 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 3334444556789999999999 89999999999999999999 5999999999999999999
Q ss_pred hhHHHHHHHHHHhc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMAL-N-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 298 ~ka~~~~g~~~~~~-~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
..+|+.|+.++..+ + +++++++.++++++++|.|-.+|...+.+...+....
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 99999999999998 8 9999999999999999999999999999888877655
No 213
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.85 E-value=4.3e-09 Score=81.36 Aligned_cols=76 Identities=8% Similarity=0.030 Sum_probs=70.1
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...+..+..+|..++..|+|++|+..|+++++ ..|....++.++|.|+..+|++++|+..++
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------------------QFPNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44678899999999999999999999999999 788889999999999999999999999999
Q ss_pred HHhhcCCCchhHHH
Q 018089 289 FAMRDGDDNVKALF 302 (361)
Q Consensus 289 ~al~~~p~~~ka~~ 302 (361)
+++..+|++.....
T Consensus 86 ~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 86 KIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHCCCHHHHH
T ss_pred HHHHhCCCcHHHHH
Confidence 99999999877654
No 214
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=1.4e-08 Score=84.34 Aligned_cols=121 Identities=7% Similarity=-0.064 Sum_probs=95.5
Q ss_pred hHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh--h-------c--cccCCCCc-----cchhhHHHHHHHHHHH
Q 018089 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--I-------C--WEKEGIDE-----GKSSSLRKTKSQIFTN 269 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~--~-------~--~~~~~~~~-----~~~~~~~~~~~~~~~n 269 (361)
...++.+..+..+|..+...|++++|+..|+++++.-+ . . ........ +.....+|.+..++++
T Consensus 34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~ 113 (176)
T 2r5s_A 34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE 113 (176)
T ss_dssp HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence 34455678889999999999999999999998876532 0 0 00000000 0012346778899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 270 SSACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 270 la~~~~~l~~~~~Ai~~~~~al~~~p~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
+|.++..+|++++|+..++++++++|+. ..+++.+|.++..+|++++|+..|++++.
T Consensus 114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999986 56999999999999999999999999874
No 215
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.82 E-value=7.2e-09 Score=97.27 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=86.3
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+.++|..+++.|+|++|+++|+++++ ++|....+++++|.+|..++++++|+.++++
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3467788899999999999999999999999 6777889999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVES 320 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~ 320 (361)
|++++|++..++..++.++..++++++|...
T Consensus 333 Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 333 AQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888753
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.82 E-value=3e-08 Score=91.08 Aligned_cols=116 Identities=10% Similarity=-0.042 Sum_probs=104.6
Q ss_pred HHhhHHHHHhccHHHHhh--hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC-HHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALL 285 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Ai~ 285 (361)
++....+...+..+...+ +|+++++.+.++++ .+|.+..+|.+++.+...++. ++++++
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------------------~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 345677788888888877 49999999999999 899999999999999999998 699999
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 286 DTEFAMRDGDDNVKALFRQGQAYMAL--------------NDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~~~~~--------------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
+++++|..+|.|..||..++.++..+ +.++++++++.+++.++|+|..+|..+.-+.
T Consensus 167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 167 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999888 5689999999999999999999998665543
No 217
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=2.2e-08 Score=84.25 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=90.7
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
..+..+..+|..+...|+|++|+.+|++++++...... .......++.++|.++..+|++++|+..+++
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE-----------DPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc-----------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45777889999999999999999999999996542200 1125677899999999999999999999999
Q ss_pred HhhcCCC------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 290 AMRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 290 al~~~p~------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
++.+.+. ...++..+|.++..+|++++|+..+++++++..
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9976432 145678999999999999999999999998854
No 218
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=1.8e-08 Score=93.02 Aligned_cols=120 Identities=6% Similarity=-0.084 Sum_probs=110.2
Q ss_pred HHhhHHHHHhccHHHHhh-hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-C-CHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-G-DLKGALL 285 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~-~~~~Ai~ 285 (361)
++....+..++..+...+ .+++++..+.++|. .+|.+..+|+.|+.+...+ + ++++++.
T Consensus 85 P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~------------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 85 PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV------------------QNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 334677888899999888 59999999999999 8889999999999999998 8 9999999
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 286 DTEFAMRDGDDNVKALFRQGQAYMALNDVD--------AAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~~~~~~~~~--------~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
.++++|..+|.|..||+.++.++..++.++ +++++++++++.+|.|-.+|.....+...+.
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999888 9999999999999999999999998876654
No 219
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=2.8e-08 Score=88.99 Aligned_cols=119 Identities=13% Similarity=-0.017 Sum_probs=101.3
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.....+..+...|+|++|.+.|..++. ..|... ..+.+|.++++.++|++|+..++.++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~------------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPV------------------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCC------------------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 445678889999999999999999887 566777 8999999999999999999999988886
Q ss_pred CCC-c-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHH
Q 018089 294 GDD-N-VKALFRQGQAYMALNDVDAAVESFEKALKLE--PN-DGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 294 ~p~-~-~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~--p~-~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.+. . ..+++.+|.++..+|++++|+.+|++++.-. |. ...+...++.+...+.+..++
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA 227 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA 227 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence 422 2 4699999999999999999999999998654 55 567888899998888876665
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.75 E-value=4.4e-08 Score=74.33 Aligned_cols=83 Identities=23% Similarity=0.142 Sum_probs=70.2
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+.....+|..+++.++|..|+..|++|++..+.-. . .......++.++|.|+.++|++++|+..+++|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----~------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----I------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----C------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----C------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 56678999999999999999999999998542110 0 012456789999999999999999999999999
Q ss_pred hcCCCchhHHHHHH
Q 018089 292 RDGDDNVKALFRQG 305 (361)
Q Consensus 292 ~~~p~~~ka~~~~g 305 (361)
.++|++..++.+++
T Consensus 74 ~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 74 ELDPEHQRANGNLK 87 (104)
T ss_dssp HHCTTCHHHHHHHH
T ss_pred hcCCCCHHHHhhHH
Confidence 99999999988887
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.75 E-value=5e-08 Score=72.49 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 018089 261 KTKSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~---~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 333 (361)
|.++.++..+|.+++..++ .++|...+++||.++|+++++++.+|.+++..|+|++|+..++++++.+|.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3456788899999876655 799999999999999999999999999999999999999999999999998543
No 222
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.74 E-value=9.8e-09 Score=77.19 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=64.1
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|+++++ ++|....+|.++|.+|..+|++++|+..++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467789999999999999999999999999 78888889999999999999999999999999
Q ss_pred hhcCCCc
Q 018089 291 MRDGDDN 297 (361)
Q Consensus 291 l~~~p~~ 297 (361)
+++.|..
T Consensus 68 l~l~~~~ 74 (100)
T 3ma5_A 68 IEVAREE 74 (100)
T ss_dssp HHHHHHH
T ss_pred HhhhhcC
Confidence 9987754
No 223
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.72 E-value=1.8e-07 Score=86.84 Aligned_cols=129 Identities=12% Similarity=-0.038 Sum_probs=97.2
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..|++++++.+... .......++.++|.++..+|++++|+..++++
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------------VWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345677889999999999999999999998554320 11233566788999999999999999999999
Q ss_pred hhcC--------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHH
Q 018089 291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----GGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 291 l~~~--------p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-----~~~~~~l~~~~~~~~~~~~~ 351 (361)
+.+. |....++..+|.++..+|++++|...+++++.+.|.. ..++..++.+....++..++
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9764 3456678889999999999999999999999888752 23455666666555554443
No 224
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=3.1e-08 Score=89.39 Aligned_cols=117 Identities=9% Similarity=-0.068 Sum_probs=91.0
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc-----------cccCCCCc-----cchhhHHHHHHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-----------WEKEGIDE-----GKSSSLRKTKSQIFTNSSAC 273 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~~nla~~ 273 (361)
+.+..+..+|..+...|++++|+..|+++++.-+.. ........ +.....+|.+..+++++|.+
T Consensus 149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~ 228 (287)
T 3qou_A 149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQ 228 (287)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 346677788888888888888888887775532200 00000000 00123578888999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 274 KLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 274 ~~~l~~~~~Ai~~~~~al~~~p~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
+..+|++++|+..+.++++.+|++ ..++.+++.++..+|+.++|+..|++++.
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999998 89999999999999999999999999875
No 225
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.66 E-value=5e-08 Score=95.56 Aligned_cols=120 Identities=12% Similarity=0.088 Sum_probs=84.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
.+..+...|..+.+.|++++|...|++++++ .|.. ..+|.+++.++.++|++++|+..+++
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3556677788888899999999999999982 2222 24677777777777777777777777
Q ss_pred HhhcCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 018089 290 AMRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 290 al~~~p~~~ka~~~~g~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 348 (361)
|+...|.....+...+.+ +..+|++++|...|+++++.+|+++.++..+..+....++.
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence 777777666666655544 33567777777777777777777777777766665544433
No 226
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.65 E-value=2e-07 Score=74.42 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=83.7
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhc
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRD 293 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~~~~al~~ 293 (361)
+|..+...+.+++|+++|++|.+ . .++.+++++|.+|.. .+++++|+.++++|.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~------------------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE------------------L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc------------------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 78888888888889999999976 2 456789999999998 89999999999999987
Q ss_pred CCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 339 (361)
.++.+++++|.+|.. .+++++|+.+|+++.++ .++.+...|+
T Consensus 91 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 91 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 579999999999999 89999999999999988 4555555543
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.64 E-value=3.9e-07 Score=70.83 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=89.5
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-Cch
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG---ALLDTEFAMRDG-D-DNV 298 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~---Ai~~~~~al~~~-p-~~~ 298 (361)
.......+...|.+.+. ..+....+.+++|.|+.+-.+... +|..++..++.+ | ..-
T Consensus 13 ~~~~l~~~~~~y~~e~~------------------~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~R 74 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHH
Confidence 44556667777877766 444566788999999999887666 999999999987 5 578
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
+++|.+|.+++.+|+|++|..+++.+++.+|+|..+..+...++.++.+
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988888776653
No 228
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.62 E-value=6.7e-08 Score=93.82 Aligned_cols=117 Identities=10% Similarity=-0.023 Sum_probs=95.7
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
+..+..+.++|..+..+|+|++|+.+|+++|++...... ...|.....++|+|.+|..+|+|++|+..++
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG----------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH----------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC----------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 346788899999999999999999999999996653322 1467888999999999999999999999999
Q ss_pred HHhhc-----CCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 289 FAMRD-----GDD---NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 289 ~al~~-----~p~---~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
+|+++ .|+ -.+..-.++.++..++.|++|...|.++.+-.-.|..++
T Consensus 418 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 418 KAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99954 344 467778899999999999999999999977654555554
No 229
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.60 E-value=1.6e-07 Score=71.88 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++..++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999988877766653
No 230
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.60 E-value=2.4e-07 Score=89.77 Aligned_cols=108 Identities=19% Similarity=0.090 Sum_probs=84.5
Q ss_pred HHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHHHHHH
Q 018089 214 SIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLD 286 (361)
Q Consensus 214 ~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Ai~~ 286 (361)
.+..+|..++..| ++++|+++|+++++ . .+..+++++|.+|.. .+++++|+.+
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~------------------~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAA------------------K--GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHH------------------C--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3444555555422 56666666666654 1 346789999999999 8999999999
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN---DGGIKKELAVAKK 343 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~~~~ 343 (361)
+++|++.. ++.+++++|.+|.. .+++++|+.+|+++++.+|+ ++.+...++.+..
T Consensus 390 ~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 390 MRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 99999875 68999999999998 89999999999999999954 7788887777644
No 231
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.60 E-value=5.6e-07 Score=88.06 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhh-c
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDLK-------GALLDTEFAMR-D 293 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~~-------~Ai~~~~~al~-~ 293 (361)
..|+..|++++. ..|....+|+++|..+.. +|+++ +|+..+++|+. +
T Consensus 255 ~~a~~~y~~al~------------------~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 255 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 578899999999 888899999999999986 79987 99999999997 8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~~~~~~ 351 (361)
+|++..+|+.+|.++..+|++++|...|+++++++|.+. .++..++.+..+.+..+++
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999999986 5888888887776665554
No 232
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.55 E-value=5.5e-07 Score=83.57 Aligned_cols=131 Identities=15% Similarity=-0.008 Sum_probs=102.1
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
.-.+..+...|..++..|++++|+..+++++...+.. .......++.++|.++..+|++++|+..++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 77 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------WFYSRIVATSVLGEVLHCKGELTRSLALMQ 77 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------------chhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3346677788999999999999999999999844211 122355678999999999999999999999
Q ss_pred HHhhcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHHHHHHHHH
Q 018089 289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP--------NDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~------~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+++.+.|.. ..++..+|.++..+|++++|+..+++++++.+ ....+...++.+....++..++.
T Consensus 78 ~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999876543 34578899999999999999999999999863 23345566777766665555543
No 233
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=1.3e-06 Score=69.69 Aligned_cols=94 Identities=21% Similarity=0.079 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
.+++++|+++|+++.+ .. +..+. +|.+|...+.+++|+.++++|.+. .++.+++++
T Consensus 8 ~~d~~~A~~~~~~aa~------------------~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L 63 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE------------------LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL 63 (138)
T ss_dssp HHHHHHHHHHHHHHHH------------------TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHc------------------CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 5789999999999987 22 22233 999999999999999999999998 589999999
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 018089 305 GQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 305 g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 344 (361)
|.+|.. .+++++|+.+|+++.+. .++.+...|+.+...
T Consensus 64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 64 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999999 89999999999999987 688999999988776
No 234
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.39 E-value=1.6e-06 Score=83.32 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=66.5
Q ss_pred hHHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc----CCHHHHH
Q 018089 212 VDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GDLKGAL 284 (361)
Q Consensus 212 a~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~~~~~Ai 284 (361)
...+..+|..+...| ++++|+..|+++++ ..+.....++++|.+|... +++++|+
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------RGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 346778899999999 99999999999987 3333444445555555443 4555555
Q ss_pred HHHHHHhhcCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 285 LDTEFAMRDGDDNVKALFRQGQA-Y--MALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~g~~-~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
.+++++. |.++.+++++|.+ + ...+++++|+.+|+++.+. +++.+...|+.+..
T Consensus 238 ~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 238 ALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 5555555 5555555555555 2 3445555555555555543 24555555554443
No 235
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.38 E-value=3.1e-06 Score=81.90 Aligned_cols=109 Identities=20% Similarity=0.088 Sum_probs=69.3
Q ss_pred hhHHHHHhccHHHH----hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh----cCCHHH
Q 018089 211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKG 282 (361)
Q Consensus 211 ~a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~ 282 (361)
.+..+..+|..+.. .+++++|+.+|+++++. ....+++++|.+|.. .+++++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--------------------GLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 45567777888877 78888888888887651 234455666666666 566666
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 283 Ai~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 343 (361)
|+.++++++.. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+...|+.+..
T Consensus 134 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 134 SVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence 66666666554 356666666666665 55666666666666654 35555555555544
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.34 E-value=2.4e-06 Score=76.04 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=81.0
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH--HHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhcCCC
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKL-----GDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l-----~~~~~Ai~~~~~al~~~p~ 296 (361)
.-+....|....++|++ ++|. ...+|.-+|..|.+. |+.++|.+++++||+++|+
T Consensus 175 Al~~l~~A~a~lerAle------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~ 236 (301)
T 3u64_A 175 LPDTVHAAVMMLERACD------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA 236 (301)
T ss_dssp CHHHHHHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT
T ss_pred HHHhHHHHHHHHHHHHH------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC
Confidence 34567889999999999 7777 677999999999996 9999999999999999997
Q ss_pred c-hhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC
Q 018089 297 N-VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 297 ~-~ka~~~~g~~~~~-~~~~~~A~~~~~~a~~l~p~~ 331 (361)
. ..+++..|..+.. .+++++|.+.+++++..+|..
T Consensus 237 ~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 237 HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 5 9999999999988 499999999999999998874
No 237
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.2e-05 Score=75.90 Aligned_cols=119 Identities=11% Similarity=0.008 Sum_probs=68.6
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccc---------------cCCCCccchhhH-------------HHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE---------------KEGIDEGKSSSL-------------RKT 262 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~---------------~~~~~~~~~~~~-------------~~~ 262 (361)
....+..+|..+++.|+|++|++.|.+++.+.+.... ......+..... ...
T Consensus 54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 4566889999999999999999999999886643210 000000000000 011
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~------~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
...++.++|.+|..+|+|.+|+..+++++.. .+....++..+|.+|..+|+|++|...|++++.+.+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 2345556666666666666666666655543 122245566666666666666666666666666543
No 238
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=5.5e-06 Score=66.72 Aligned_cols=79 Identities=10% Similarity=0.010 Sum_probs=68.1
Q ss_pred hhHHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHH-H-HHHHHHHHHHHHHHhcCCHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~Ai~ 285 (361)
..+..++.|..+.+.+ ++++++..++..++ .+ | ....+++++|..|+++++|++|+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~------------------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3567788899999866 88899999999998 55 5 568899999999999999999999
Q ss_pred HHHHHhhcCCCchhHHHHHHHH
Q 018089 286 DTEFAMRDGDDNVKALFRQGQA 307 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~ 307 (361)
+++++|+++|+|..|..-+-.+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999998887655443
No 239
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.22 E-value=8e-06 Score=78.43 Aligned_cols=107 Identities=15% Similarity=0.021 Sum_probs=76.6
Q ss_pred HhhHHHHHhccH-H--HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-----CHH
Q 018089 210 NAVDSIKVFGNE-H--YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK 281 (361)
Q Consensus 210 ~~a~~~~~~G~~-~--~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~ 281 (361)
..+..+..+|.. + ...+++++|+.+|+++++ .....+++++|.+|. .| +++
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------------------ADQPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHH-cCCCCCCCHH
Confidence 445667777877 3 467888999999988865 225567788888776 44 788
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 282 GALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 282 ~Ai~~~~~al~~~p~~~ka~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
+|+.++++|+ +.++.+++++|.+|.. ..++++|+.+|+++.+. .++.+...|+.+.
T Consensus 305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF 364 (452)
T ss_dssp HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 8888888887 7778888888877776 34788888888877764 4455555555554
No 240
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=5.4e-06 Score=78.21 Aligned_cols=138 Identities=9% Similarity=-0.016 Sum_probs=90.4
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
....+.|..+.+.|+|++|++.|.++++..+........... .....+....++.++|.+|..+|+|++|++.+.+++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASV-DDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSB-CSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHH-HHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345667888999999999999999999855433221111111 1123445567789999999999999999999999987
Q ss_pred cCCCchh------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 293 ~~p~~~k------a~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~~ 351 (361)
+.+...+ +...++.++...|++++|+..+++++.+.+.. ..+...|+.+....+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 6544322 23345666666677777777777776654321 33555556655555554444
No 241
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.19 E-value=8e-06 Score=86.66 Aligned_cols=108 Identities=21% Similarity=0.239 Sum_probs=89.8
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+...|..++..|+|++|+.+|.+|- -|..+|.|+.++|++++|++.+.+|..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~--------------------------ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------NFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhh--------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 356679999999999999999999873 478899999999999999999998855
Q ss_pred cCC-------------------------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 293 DGD-------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 293 ~~p-------------------------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
..+ .++..+..++..|..+|.|++|+..|++++.++|.+...+..|+.+..+.+
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 443 133455677788999999999999999999999999999988887766544
No 242
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.13 E-value=8.7e-06 Score=77.19 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=84.8
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai 284 (361)
.......+..+..+|..+++.|+|++|++.|++|.. +..|...+.+|..+|+|+.|.
T Consensus 141 A~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----------------------~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 141 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-----------------------TRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC-----------------------chhHHHHHHHHHHcCcHHHHH
Confidence 344455566666777777777777777777777632 356667777777777777775
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
.+... |..+|++ +..+...|...|++++|+..|++++.+++.+..++..|+.+..+.+
T Consensus 198 ~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 198 MCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence 55543 4455544 3457788999999999999999999999999999999988766544
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.11 E-value=4.3e-05 Score=59.51 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~---~~~Ai~~~~~al~~~p~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.....+|.|.|+.+-.+ ..++|..++..++.+|. ....+|.+|.+++.+|+|++|..+.+.+++.+|+|..+..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34567888888888764 56799999999998884 588999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 018089 339 AVAKKKIHE 347 (361)
Q Consensus 339 ~~~~~~~~~ 347 (361)
..++.++.+
T Consensus 119 ~~Ie~ki~k 127 (134)
T 3o48_A 119 SMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887764
No 244
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.10 E-value=1.9e-05 Score=71.52 Aligned_cols=121 Identities=9% Similarity=0.036 Sum_probs=92.9
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK--TKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.+...|..+...|++++|++.+.++|. .++ ....++..++.+++++|+.+.|.+.+++..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~------------------~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGID------------------NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT------------------SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc------------------cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346789999999999999999999987 443 678899999999999999999999999999
Q ss_pred hcCCC----chhHHHHHHHH--HHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018089 292 RDGDD----NVKALFRQGQA--YMALN--DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 292 ~~~p~----~~ka~~~~g~~--~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+.+|+ +...+..++.+ ....| ++++|...|+++....|+.......+. +...+++..++++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 99984 33444555544 66556 999999999999888886333333333 5555555555543
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.08 E-value=5.8e-05 Score=59.52 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~---~~~Ai~~~~~al~~~p-~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 338 (361)
.....+|.|.|+.+-.+ ..++|..++..++.+| ..-..+|.+|.+++.+|+|++|.++.+.+++.+|+|..+..+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45667888888888764 5579999999999888 4678999999999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q 018089 339 AVAKKKIH 346 (361)
Q Consensus 339 ~~~~~~~~ 346 (361)
..++.++.
T Consensus 118 ~~Ie~~i~ 125 (144)
T 1y8m_A 118 SMVEDKIQ 125 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
No 246
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.07 E-value=2.8e-05 Score=71.84 Aligned_cols=120 Identities=11% Similarity=0.050 Sum_probs=83.8
Q ss_pred hHHHHHhccHHHH---hhhHHHHHHHHHHHHHhhhhcc--------------ccCCCCccc------------hhhHHHH
Q 018089 212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICW--------------EKEGIDEGK------------SSSLRKT 262 (361)
Q Consensus 212 a~~~~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~--------------~~~~~~~~~------------~~~~~~~ 262 (361)
|-.++-.|..++. ..++.+|+.+|++|+++-|... ......... .....|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 4445556666654 4567899999999998655210 000001000 0022344
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
.+.++.-+|.+++..|++++|+..+++|+.++| +.-+|..+|.++...|++++|++.|++|+.++|..+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 555666677777778999999999999999986 467888889999999999999999999999999765
No 247
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.94 E-value=1.5e-05 Score=58.92 Aligned_cols=69 Identities=10% Similarity=0.032 Sum_probs=61.9
Q ss_pred hhHHHHHhccHHHHhhh---HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQD---YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~---y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~ 287 (361)
.+..+...|..++-.++ ..+|...++++|+ ++|.++.++..+|..+++.|+|++|+..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35667778888875555 7999999999999 99999999999999999999999999999
Q ss_pred HHHhhcCCCc
Q 018089 288 EFAMRDGDDN 297 (361)
Q Consensus 288 ~~al~~~p~~ 297 (361)
++++..+|.+
T Consensus 67 ~~~l~~~p~~ 76 (93)
T 3bee_A 67 VLLLDSNDPN 76 (93)
T ss_dssp HHHHTCCCTT
T ss_pred HHHHhhCCCC
Confidence 9999999984
No 248
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.93 E-value=1.7e-05 Score=75.57 Aligned_cols=93 Identities=9% Similarity=0.064 Sum_probs=75.3
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
+..+..+.++|..+..+|+|++|+.+|+++|.+....... ..|.....++|+|.+|..+|++++|+..++
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----------CChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4467888999999999999999999999999976543222 467888999999999999999999999999
Q ss_pred HHhhc-----CCCc---hhHHHHHHHHHHhc
Q 018089 289 FAMRD-----GDDN---VKALFRQGQAYMAL 311 (361)
Q Consensus 289 ~al~~-----~p~~---~ka~~~~g~~~~~~ 311 (361)
+|+++ .|++ ..++.+++.+...+
T Consensus 396 ~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 396 LAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99954 4444 45666677666544
No 249
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.91 E-value=7.5e-05 Score=79.40 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=83.9
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC----CCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE----GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
.+.|..+...|+|++|++.|+++-.........- ...+...-........+|.++|.++..+|++++|+..|.+|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 3469999999999999999988754332111100 00000000112355788999999999999999999999886
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
++..+|++.|.++..+|+|++|+++|..|.+.+++
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 88999999999999999999999999999998854
No 250
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.91 E-value=7.3e-05 Score=67.68 Aligned_cols=112 Identities=7% Similarity=-0.048 Sum_probs=78.6
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHH----HHHHHHHHHHH--HHhcC--CHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT----KSQIFTNSSAC--KLKLG--DLKGA 283 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~nla~~--~~~l~--~~~~A 283 (361)
.+.....+..+.+.|+.+.|.+.+++..+ .+|. .-.+..+++.. .+..| ++++|
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~------------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A 197 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTN------------------AIEDTVSGDNEMILNLAESYIKFATNKETATSN 197 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCccccccchHHHHHHHHHHHHHHhCCccHHHH
Confidence 34445567788899999999999998876 4441 12333444433 55556 88889
Q ss_pred HHHHHHHhhcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHH
Q 018089 284 LLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKL----------EPNDGGIKKELAVAKKK 344 (361)
Q Consensus 284 i~~~~~al~~~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l----------~p~~~~~~~~l~~~~~~ 344 (361)
...|+++....|+ ....+++ ++..+|++++|.+.++.++++ +|+|+.+..++..+...
T Consensus 198 ~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 198 FYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp HHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 8888888888776 3445555 788889999999888877776 47788887666444333
No 251
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.88 E-value=7.3e-05 Score=66.52 Aligned_cols=139 Identities=14% Similarity=0.025 Sum_probs=93.1
Q ss_pred hHHHHhhHHHHHhccHHHHh--------------hhHHHHHHHHHHHHHhhhhccccCCCC-------------ccchhh
Q 018089 206 SWWMNAVDSIKVFGNEHYKK--------------QDYKMALRKYRKALRYLDICWEKEGID-------------EGKSSS 258 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~--------------g~y~~A~~~y~~al~~~~~~~~~~~~~-------------~~~~~~ 258 (361)
......+.-+-..|+.+... .++..|...|.++.++.........+. .+....
T Consensus 67 ~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (301)
T 3u64_A 67 GLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSR 146 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHH
Confidence 33344455555556655553 257788888888888775332211110 011122
Q ss_pred HHHHHHHHHHHHHHHHHh---c--C------CHHHHHHHHHHHhhcCCC--chhHHHHHHHHHHhc-----CCHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLK---L--G------DLKGALLDTEFAMRDGDD--NVKALFRQGQAYMAL-----NDVDAAVES 320 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~---l--~------~~~~Ai~~~~~al~~~p~--~~ka~~~~g~~~~~~-----~~~~~A~~~ 320 (361)
.++.++..++=.|..... + + ....|....++||++||+ +..+|..+|..|... |+.++|.+.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 344555555555554432 2 2 367889999999999999 567999999999996 999999999
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHH
Q 018089 321 FEKALKLEPND-GGIKKELAVAKKK 344 (361)
Q Consensus 321 ~~~a~~l~p~~-~~~~~~l~~~~~~ 344 (361)
|++|++++|+. ..+...++.-...
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHH
Confidence 99999999975 7777777775443
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.88 E-value=0.00012 Score=59.46 Aligned_cols=119 Identities=9% Similarity=0.028 Sum_probs=86.2
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+.+....++..+.|+.|+-.+..++.+.... +.. -.......++..+|.+++..++|.+|...|++||.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~---~~~------~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN---PEL------FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---TTS------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC---ccc------ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 346777888999999999999999988854210 000 01123456889999999999999999999999983
Q ss_pred cC------C-------------------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 293 DG------D-------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 293 ~~------p-------------------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
+. + ...+..|++|.||..++++++|+..++..-.. -..+.+...|+++
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL 164 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL 164 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence 31 1 11368899999999999999999988753211 1355566666554
No 253
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.82 E-value=3.3e-05 Score=73.69 Aligned_cols=75 Identities=9% Similarity=0.001 Sum_probs=64.6
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
+..+..+.++|..+..+|+|++|+.+|+++|.+....... ..|.....++|+|.+|..+|+|++|+..++
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----------YSLNVASMWLKLGRLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----------CChHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3467788899999999999999999999999976543221 467888999999999999999999999999
Q ss_pred HHhhc
Q 018089 289 FAMRD 293 (361)
Q Consensus 289 ~al~~ 293 (361)
+|+++
T Consensus 407 ~Al~i 411 (433)
T 3qww_A 407 KAIAI 411 (433)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99964
No 254
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.76 E-value=7.5e-05 Score=68.99 Aligned_cols=44 Identities=11% Similarity=-0.124 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~ 304 (361)
+++. ...|..+|.++...|++++|++.+++|++++|... .|+..
T Consensus 306 Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 306 LEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp HCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred cCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 4443 45678899999999999999999999999999775 44443
No 255
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.63 E-value=0.00012 Score=69.43 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=69.8
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.+...|..++..|+|++|+.+|.++ .-|.++|.|+.++|+|++|++.+.+|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA--- 174 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------------------SNFGRLASTLVHLGEYQAAVDGARKA--- 174 (449)
T ss_dssp -------------CTTTHHHHHHHT--------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------------------------hhHHHHHHHHHHhccHHHHHHHHHHc---
Confidence 7899999999999999999999976 24899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 294 ~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
.+++.|.....++...|+++.|...... +..+|++ ...+..+.++.+..++
T Consensus 175 --~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 175 --NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEE 225 (449)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHH
T ss_pred --CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHH
Confidence 4789999999999999999999877664 3345433 3344444444443333
No 256
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.38 E-value=0.00068 Score=52.53 Aligned_cols=77 Identities=9% Similarity=-0.043 Sum_probs=58.2
Q ss_pred hHHHHHhccHHHHhhhHHH---HHHHHHHHHHhhhhccccCCCCccchhhHH-H-HHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKM---ALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
....++.|..+.+..+-.. ++..++..++ .. | ..-.+++.+|..++++|+|.+|+.+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------------------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------------------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445566666666554443 7777777665 22 3 5678999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHHHHH
Q 018089 287 TEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~g~ 306 (361)
++.+|+.+|+|..|..-+..
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 99999999999887655543
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.30 E-value=0.0033 Score=58.91 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=90.7
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccC---CCC-ccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---GID-EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~ 287 (361)
.+.+...|......++...|++.+.+|+.++.--.-.. ... ......+......+...++..++.+|++.+|+..+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455566666778899999999999999774211110 011 12224566677778888999999999999999999
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..++..+|.+..+|..+-.++...|+..+|++.|+++-+
T Consensus 195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988755
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.27 E-value=0.00088 Score=54.29 Aligned_cols=97 Identities=13% Similarity=0.135 Sum_probs=65.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCC-----C--ccchhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI-----D--EGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (361)
.++.+...|+.+|.+++|..|...|++||.+-+........ + ........+...++.+.+|.||.+++++++|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 46778889999999999999999999999876643222110 0 0000000123457889999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHHHHHHH
Q 018089 284 LLDTEFAMRDGDDNVKALFRQGQAY 308 (361)
Q Consensus 284 i~~~~~al~~~p~~~ka~~~~g~~~ 308 (361)
+...+..-.. -...+...-+|..|
T Consensus 142 i~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred HHHHhcCCch-hcCHHHHHHHHHHh
Confidence 9987553222 24677777777655
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.23 E-value=0.0024 Score=49.68 Aligned_cols=77 Identities=10% Similarity=0.045 Sum_probs=57.6
Q ss_pred HHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 213 DSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 213 ~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
...++.|..+.+.. +...++..++..++ ..| ..-.+++.+|..+.++|+|.+|+.+++
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~------------------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33445555555433 44567777777666 334 467899999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQA 307 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~~ 307 (361)
.+|++.|+|..|..-+..+
T Consensus 103 ~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 103 TLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHH
Confidence 9999999998876655443
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.99 E-value=0.0047 Score=48.63 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=55.8
Q ss_pred HHHHHhccHHHHhh---hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 213 DSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 213 ~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Ai~~~~ 288 (361)
+..++.+..+.+.. +-.+++..++..++ ..| ..-.+++.+|..++++|+|.+|+.+++
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~------------------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH------------------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455555555533 34456666666665 222 466789999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHH
Q 018089 289 FAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~g~ 306 (361)
.+|+.+|+|..|..-+..
T Consensus 102 ~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 102 TLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHTCCCCHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHH
Confidence 999999999877655443
No 261
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.91 E-value=0.016 Score=45.99 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAY 308 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~ 308 (361)
+.-++.|++|+..++-. . .......+.+|.+.|.. ..+++.++|.+.|+.++.++...++.|.-.|+--
T Consensus 36 ~rlrd~YerAia~~Pp~---------k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFE 104 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPD---------K-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFE 104 (161)
T ss_dssp HHHHHHHHHHHHHSCGG---------G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcc---------c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88889999999966432 1 22455677888888865 6779999999999999999888899999999988
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHH
Q 018089 309 MALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 309 ~~~~~~~~A~~~~~~a~~l~p~~~~~ 334 (361)
..+|+...|...+.+|+.+.|...+.
T Consensus 105 iRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 105 LSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHcccHHHHHHHHHHHhccCCCcHHH
Confidence 89999999999999999999976544
No 262
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.84 E-value=0.0053 Score=61.77 Aligned_cols=103 Identities=9% Similarity=-0.022 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhcCCCchhHHHHHHH
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL-LDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai-~~~~~al~~~p~~~ka~~~~g~ 306 (361)
.+.....|++||. ..|....+|+..|..+...++.++|+ ..+++|+...|.+...|+..+.
T Consensus 325 ~~Rv~~~Ye~aL~------------------~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~ 386 (679)
T 4e6h_A 325 KARMTYVYMQAAQ------------------HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSE 386 (679)
T ss_dssp HHHHHHHHHHHHH------------------HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556788999999 66778899999999999999999997 9999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC-----------CC-----------CHHHHHHHHHHHHHHHHH
Q 018089 307 AYMALNDVDAAVESFEKALKLE-----------PN-----------DGGIKKELAVAKKKIHER 348 (361)
Q Consensus 307 ~~~~~~~~~~A~~~~~~a~~l~-----------p~-----------~~~~~~~l~~~~~~~~~~ 348 (361)
.....|++++|...|++++..- |. ...+|..+..+..+.+..
T Consensus 387 ~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 387 QYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999752 53 234666666666655543
No 263
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.81 E-value=0.0041 Score=62.59 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=89.8
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMR 292 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al~ 292 (361)
.+...++...+.+..+.|...|.+|+... .+....+|...|....+.+ +++.|...|+.+|+
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~-----------------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLK-----------------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTG-----------------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45555666667888999999999998731 1122445666777766665 59999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHH
Q 018089 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKELAVAKKKIH 346 (361)
Q Consensus 293 ~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~~~~~~~ 346 (361)
..|++...|...+......|+.+.|...|++|+...|. ...++......+...+
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 99999998888888888899999999999999999883 4566766666665544
No 264
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0065 Score=61.43 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
.+....++.--|..++..++|+-|+..+++|+...|.....|++++.+|..+|+|+.|+-.+..+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445566666777888999999999999999999999999999999999999999999877766
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.80 E-value=0.056 Score=52.09 Aligned_cols=83 Identities=8% Similarity=-0.100 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 342 (361)
...++..+|.+......+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..+|..+-
T Consensus 151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999988777888888888876
Q ss_pred HHH
Q 018089 343 KKI 345 (361)
Q Consensus 343 ~~~ 345 (361)
...
T Consensus 231 ~~~ 233 (497)
T 1ya0_A 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.71 E-value=0.082 Score=46.26 Aligned_cols=69 Identities=19% Similarity=0.051 Sum_probs=61.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 341 (361)
-.++.+..++|++.+...++-+|.+++....+.+.++-.|+++.|...++.+.+++|+.......++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999877665554443
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.41 E-value=0.091 Score=49.00 Aligned_cols=99 Identities=16% Similarity=-0.011 Sum_probs=79.1
Q ss_pred HhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--
Q 018089 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-- 294 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~-- 294 (361)
.+|..++..|+|.+|++.+.+.++.+.... .......++.....+|..++++.++...+.+|....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d------------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLD------------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS------------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccc------------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 579999999999999999999998665320 135678889999999999999999999998887432
Q ss_pred --C-Cc--hhHHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q 018089 295 --D-DN--VKALFRQGQAYM-ALNDVDAAVESFEKALKL 327 (361)
Q Consensus 295 --p-~~--~ka~~~~g~~~~-~~~~~~~A~~~~~~a~~l 327 (361)
+ .. ......-|..++ ..++|..|..+|-.+++-
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2 12 344555688888 899999999999888743
No 268
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.99 E-value=0.18 Score=48.59 Aligned_cols=133 Identities=10% Similarity=-0.065 Sum_probs=89.7
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhcccc------CCCCccchhh----------------HHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK------EGIDEGKSSS----------------LRKTKSQIFTN 269 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~------~~~~~~~~~~----------------~~~~~~~~~~n 269 (361)
...|...+..+...|+.+.|...|++|+.. |..... -....+.... .......+|..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 445666777888899999999999999986 532110 0000000000 01223466778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 018089 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 346 (361)
.+....+.++.+.|...+++| ...+.....|...|..-...+ +.+.|...|+++++..|+++..+.........+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 888877888999999999999 443345566766676655555 6999999999999999998877665555444333
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.084 Score=49.96 Aligned_cols=101 Identities=13% Similarity=-0.037 Sum_probs=79.0
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
.+..+|..+++.|+++.|++.|.++...... ......++.+...+++..++|..+...+.+|-.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---------------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---------------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---------------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567899999999999999999998875432 1245678888999999999999999999998754
Q ss_pred C---CCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 294 G---DDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 294 ~---p~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
- ++. .+.....|.++...++|.+|...|-.++.-..
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2 221 23445567778889999999999988766543
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.035 Score=56.14 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=54.0
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.-+..++..+..+|+|+.|+++-++|+. +.|....+|..||.||.++|+|+.|+-..+.+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~------------------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTE------------------LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh------------------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3466678888999999999999999999 78888999999999999999999999877766
No 271
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.71 E-value=0.43 Score=38.68 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=70.1
Q ss_pred hccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh--hcC-
Q 018089 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM--RDG- 294 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al--~~~- 294 (361)
++-.++-.|.|..|+-+..+. ..+...+.-+.||.++++|..|+...+..| ..+
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~l-----------------------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~ 95 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKL-----------------------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVER 95 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC-----------------------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBC
T ss_pred hhhhhhhcchHhHHHHHHHhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456667777777666554432 234556777899999999999999999999 232
Q ss_pred --------------CCchhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 018089 295 --------------DDNVKAL-FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 295 --------------p~~~ka~-~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 335 (361)
|.+-+-+ .-+|..+...|+-++|+..+......+|--+.+-
T Consensus 96 d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 96 DPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 3333333 3469999999999999999999999887555444
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.66 E-value=0.15 Score=44.52 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=57.2
Q ss_pred cHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh
Q 018089 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k 299 (361)
..+++.|+.++|++.....++ .+|.+......+...+.-.|+|++|...++.+..++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR------------------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 467889999999999999999 88888999999999999999999999999999999998754
Q ss_pred H
Q 018089 300 A 300 (361)
Q Consensus 300 a 300 (361)
.
T Consensus 67 ~ 67 (273)
T 1zbp_A 67 G 67 (273)
T ss_dssp H
T ss_pred H
Confidence 3
No 273
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.14 E-value=0.25 Score=47.50 Aligned_cols=112 Identities=7% Similarity=-0.059 Sum_probs=83.0
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAM 291 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Ai~~~~~al 291 (361)
..+...+....+.++.+.|...|.+| .. + +....+|...|......+ +.+.|...++.++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-----------------~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-E-----------------GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-----------------CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-----------------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 44555666666788899999999999 41 1 011235555666666555 6999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
...|+.+..+...+.....+|+.+.|...|+++ +....++......+...+.
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence 988998888777788788899999999999997 3456677777766665543
No 274
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.10 E-value=0.79 Score=44.15 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCchhHHHH
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-DDNVKALFR 303 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~-p~~~ka~~~ 303 (361)
.+.++.|.+.|.+..+. .+.| +...|+.+-.+|.+.|++++|+..+++..... .-+...|..
T Consensus 83 ~~~l~~A~~lf~~M~~~----------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVD----------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp CHHHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHh----------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 35566777777765440 0112 34457777778888888888888888877643 225667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHH
Q 018089 304 QGQAYMALNDVDAAVESFEKALKL--EPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
+-.+|...|+.++|.+.|++..+. .| |...+..|-.+..+.++.+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHH
Confidence 778888888888888888887664 34 3444444444444444433
No 275
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.52 E-value=0.74 Score=44.32 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=78.9
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+-..+.+.|++++|++.+++..+. .+.| +...|+.+-..|.+.|++++|.+.+++..+
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----------------g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAF----------------GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34555667888999999999999987651 0122 345677777888999999999999999887
Q ss_pred cC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC
Q 018089 293 DG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--EPN 330 (361)
Q Consensus 293 ~~-p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--~p~ 330 (361)
.. .-+...|..+-.++...|+.++|.+.|++..+. .|+
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 53 236678888999999999999999999998664 454
No 276
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.64 E-value=2.3 Score=39.40 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----------c------------hhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDD----------N------------VKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~----------~------------~ka~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
.-....|......++.+.|+..+.+|+.+..- . ..+...++.++..+|++++|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444455678999999999999976421 1 2355667888899999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 323 KALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 323 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+++..+|-+..++..|..+.....+..++
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~A 224 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDA 224 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998888887766655544
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.12 E-value=4.5 Score=37.53 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=88.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh---------------hccccCCCCccchh-----hH---HH-----H
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD---------------ICWEKEGIDEGKSS-----SL---RK-----T 262 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~---------------~~~~~~~~~~~~~~-----~~---~~-----~ 262 (361)
.-..+..+|..+.+.|++++-.+.......++. ......+...+... .+ .. .
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678899999999999998888765544442 11111111111110 00 01 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE---PNDGG 333 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p~--~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~---p~~~~ 333 (361)
...+-..+|..|+..|+|.+|+..+.+.+.- |.. -...+....+.|..++++..+.+.|.+|.... +.++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1123458899999999999999998888853 211 15677778889999999999999999997664 24555
Q ss_pred HHHHHHHHHHHHHH
Q 018089 334 IKKELAVAKKKIHE 347 (361)
Q Consensus 334 ~~~~l~~~~~~~~~ 347 (361)
+...+..+...+.-
T Consensus 178 i~a~i~~~~Gi~~l 191 (394)
T 3txn_A 178 VQGALDLQSGILHA 191 (394)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 55555555444443
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=90.97 E-value=0.94 Score=31.98 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.3
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
..+.|..+...|...=+.|+|++|+.+|..|++++...
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 56678888899999999999999999999999987654
No 279
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.55 E-value=0.6 Score=44.86 Aligned_cols=81 Identities=14% Similarity=0.027 Sum_probs=70.0
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
-.-+..+|...--+..+..|..+|.+|+. +.|.....|+-+|.++...++.-+|+-+|.++|
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~------------------~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQ------------------LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHH------------------hCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34556688888888899999999999999 888888999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHh
Q 018089 292 RDGDDNVKALFRQGQAYMA 310 (361)
Q Consensus 292 ~~~p~~~ka~~~~g~~~~~ 310 (361)
........|.-++...+..
T Consensus 214 ~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 214 AVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp SSSBCCHHHHHHHHHHHHH
T ss_pred hcCCCChhHHHHHHHHHHH
Confidence 8776677887777777654
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=90.41 E-value=0.99 Score=31.86 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=34.7
Q ss_pred hHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
...++.|..+...|..+=+.|+|++|+.+|.+|++++...
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3556788889999999999999999999999999987654
No 281
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.30 E-value=2.3 Score=34.72 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=18.7
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
...|+.+|.....+|+++-|.++|+++=.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 34566667777777777777777766533
No 282
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=89.94 E-value=9.2 Score=34.14 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=69.1
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc--CCH-----HHHHHHH
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL-----KGALLDT 287 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~-----~~Ai~~~ 287 (361)
....|-.++..|+|.+|+..|+..|..++-.... ++++..........+...+-.+-+++ ++. +...+.+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~l 181 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD---NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRIC 181 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHH
Confidence 4678999999999999999999999877544222 22222333333333333333333333 221 2322233
Q ss_pred HHHh-----hcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 288 EFAM-----RDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 288 ~~al-----~~~p~~~ka~~~~g~-~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
+-|. .+.|.+--.-.+.|+ ..++.++|..|...-++.+++.|.
T Consensus 182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3332 445544444445554 467889999999999999999885
No 283
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.31 E-value=1.1 Score=45.03 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
..|.++|..+++.++++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 46777777777777777777777765
No 284
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=88.37 E-value=8.2 Score=34.51 Aligned_cols=116 Identities=10% Similarity=0.007 Sum_probs=69.1
Q ss_pred HHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhc-------CCHHHHHHH
Q 018089 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-------GDLKGALLD 286 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-------~~~~~Ai~~ 286 (361)
.....|-.++..|+|.+|++.|+..|..++-..... +++..........+...+-.+-+++ .+..+.++.
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~---~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lEL 192 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDD---AEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLEL 192 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 345689999999999999999999999776543332 2222223333333332222222222 111222221
Q ss_pred --HHHHhhcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 287 --TEFAMRDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 287 --~~~al~~~p~~~ka~~~~g~-~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
|=.-..+.|..--.-.+.|+ ..++.++|..|...-++.+++.|..+
T Consensus 193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 11122445544444444444 46788999999999999999999644
No 285
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.21 E-value=6.9 Score=36.87 Aligned_cols=105 Identities=7% Similarity=-0.053 Sum_probs=77.7
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.-...++..+...|+|.+|.........-. .... .......++..-...|+..++|.+|...+.++
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et--~~~~----------~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVET--YGSM----------EMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSSS----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--Hhcc----------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35556778999999999999999998876411 1000 23456778888889999999999999999887
Q ss_pred h----hcCC-Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 291 M----RDGD-DN--VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 291 l----~~~p-~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
. ...+ .. ...+...|..+...++|.+|-.+|..+++.
T Consensus 204 ~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 204 LKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4 2222 22 344555688888999999999999888764
No 286
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.15 E-value=1.4 Score=44.46 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=9.8
Q ss_pred HHHhcCCHHHHHHHHHH
Q 018089 307 AYMALNDVDAAVESFEK 323 (361)
Q Consensus 307 ~~~~~~~~~~A~~~~~~ 323 (361)
++..+|++++|++.|.+
T Consensus 745 ~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 44556666666665544
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.16 E-value=10 Score=34.26 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=56.5
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHH-HHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh---------
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRK-YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--------- 276 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~-y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------- 276 (361)
+..+.=+.++.+.+-+.++++|++|++. |.-|+.++... ....-.++...+-.+|.+
T Consensus 30 ~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~-------------Q~~sg~DL~~llvevy~~~~~~~~~~~ 96 (336)
T 3lpz_A 30 EQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSG-------------QGGSGGDLAVLLVDTFRQAGQRVDGAS 96 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred cccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCC-------------CcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3355566677888889999999999987 55555544321 000111111112223322
Q ss_pred ----------cCC--------HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 018089 277 ----------LGD--------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321 (361)
Q Consensus 277 ----------l~~--------~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~ 321 (361)
... ..+|+.+..+.=...--++..+..+|..|..-+++.+|...|
T Consensus 97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 221 223344433311112234677778888898888998888776
No 288
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=86.96 E-value=2.4 Score=32.04 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.3
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
..++.|..+...|...-..++|++|+.+|..|++++...
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 356678888888989999999999999999999987654
No 289
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.03 E-value=1.7 Score=34.41 Aligned_cols=91 Identities=10% Similarity=-0.044 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCCc--------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 259 LRKTKSQIFTNSSACKLKLGDL------KGALLDTEFAMRDGDDN--------VKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~------~~Ai~~~~~al~~~p~~--------~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
+.|.+.+.|.+.....-+.|+. ++-++.|++|+..-|.. +..|.+.|.- ..+++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4566677777777777777888 88899999999765532 4566666644 6779999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHH
Q 018089 325 LKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 325 ~~l~p~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+.++..-+-++...++-+-+.....+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~k 112 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKK 112 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHH
Confidence 98866565666666655554443333
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=83.77 E-value=2.8 Score=30.16 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
..++.|..+...|..+-+.|+|++|+.+|..|++++...
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 345577888889999999999999999999999987654
No 291
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=83.59 E-value=1.3 Score=31.56 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=30.6
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
..|-.+-..+..+.+.|+|++||++.++|..++.++
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 357777788999999999999999999999876543
No 292
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.41 E-value=5.2 Score=42.55 Aligned_cols=106 Identities=12% Similarity=-0.014 Sum_probs=73.7
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHH---------HHHHHHHHHHHHHHhcCCHHHHHH
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK---------TKSQIFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~nla~~~~~l~~~~~Ai~ 285 (361)
.+-+|..++..|++++|.++|++|..-+... ..... ......+ .....|......+.+.+.++.+++
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSH---TSQFA-VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTC---CCSCS-SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc---chhhh-hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3668999999999999999999985422110 00000 0000111 122457777888888999999999
Q ss_pred HHHHHhhcCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 286 DTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 286 ~~~~al~~~p~~-----~ka~~~~g~~~~~~~~~~~A~~~~~~a 324 (361)
.+..||...+.+ ...|.++-..+..+++|++|...+-..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 999999865432 236888899999999999998777543
No 293
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=82.68 E-value=3.3 Score=29.17 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
.++.|..+...|...-+.|+|++|+.+|..|++++...
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45567788888888889999999999999999977544
No 294
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=82.47 E-value=5.9 Score=37.39 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhc-CCCchhHHHHHHHHHHhc
Q 018089 280 LKGALLDTEFAMRD-GDDNVKALFRQGQAYMAL 311 (361)
Q Consensus 280 ~~~Ai~~~~~al~~-~p~~~ka~~~~g~~~~~~ 311 (361)
|++|+.+++++-.. ++...+-+..++..|...
T Consensus 455 Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~a 487 (526)
T 2wb7_A 455 YKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMA 487 (526)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhc
Confidence 55566666655533 233445555555444333
No 295
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.03 E-value=13 Score=30.07 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~ 325 (361)
..+++|+++.|.+.+++. ++...|.++|......|+++-|..+|.++-
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 446899999999998765 678899999999999999999999998763
No 296
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=81.67 E-value=20 Score=29.12 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH--h---------------h
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL--K---------------L 327 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~--~---------------l 327 (361)
.....++.+..-.|+|.+|+-... .-+..-+.|..+.||..+++|..|+..+++.+ + +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 445667778888999999876552 23467888999999999999999999999999 2 2
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHH
Q 018089 328 EPNDGGIKK-ELAVAKKKIHERREQ 351 (361)
Q Consensus 328 ~p~~~~~~~-~l~~~~~~~~~~~~~ 351 (361)
+|.|++... .++.+.......+++
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~Ea 133 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEG 133 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHh
Confidence 466665443 444454444444443
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.53 E-value=3.8 Score=39.34 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--Cc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD--DN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p--~~---~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
...+++.+-..|+..+.|+.|.....++.-... .+ ..-+|..|.++...++|.+|.+.|..|++..|.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 456777888899999999999999999963221 11 56677889999999999999999999999988654
No 298
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.20 E-value=26 Score=31.22 Aligned_cols=26 Identities=15% Similarity=-0.035 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 297 NVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 297 ~~ka~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
++..+..+|..|..-+++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 46778888888888899988888663
No 299
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.68 E-value=9.7 Score=28.46 Aligned_cols=79 Identities=10% Similarity=-0.042 Sum_probs=56.1
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCC----CCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG----IDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+....+.|-.+.+.|...=..|+-+.|+++|+++|..+......+- ...+.+............||..+..+++..
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~L 94 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEIL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777777889999999999999987765443322 445556666777777888888887777655
Q ss_pred HHH
Q 018089 281 KGA 283 (361)
Q Consensus 281 ~~A 283 (361)
+..
T Consensus 95 e~~ 97 (116)
T 2dl1_A 95 EKG 97 (116)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 300
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.60 E-value=2.8 Score=39.36 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDG---DDNVKALFRQGQAYMALNDVDAAVESFEKALKLE--PNDGGIKKELAV 340 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~---p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~ 340 (361)
++..+|..|.+.|++++|++.+.++.... ..-...++....++...+++..+...+.++..+- ..++.....+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56789999999999999999999988643 2346788888899999999999999999997663 234444443333
No 301
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.33 E-value=20 Score=33.69 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCHH
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR----DGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK---LEPNDGG 333 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~----~~p~~--~ka~~~~g~~~~~~~~~~~A~~~~~~a~~---l~p~~~~ 333 (361)
...+...+|..|...|+|.+|......... ..+.. ...+......|...+++.+|...++++.. -.+.++.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 556678899999999999999999888763 22222 46777788899999999999999998742 3445555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018089 334 IKKELAVAKKKIHERRE 350 (361)
Q Consensus 334 ~~~~l~~~~~~~~~~~~ 350 (361)
....+..+...+...+.
T Consensus 216 lk~~~~~~~~~~~~~e~ 232 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKR 232 (445)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55555555544444433
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=77.89 E-value=3.9 Score=28.96 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=29.4
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
.|..+...|..+-+.|+|++|+.+|..|++++...
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46667778888889999999999999999977544
No 303
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.41 E-value=19 Score=37.64 Aligned_cols=101 Identities=7% Similarity=-0.033 Sum_probs=76.2
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
..+..+=+.+.+.|+.++|.+.+.+.-+.... --.-+...|+-+-..|.+.|++++|++.+++..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k--------------G~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK--------------RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH--------------HTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc--------------CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34677788899999999999999765431000 0112456788888899999999999999999986
Q ss_pred cC-CCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhh
Q 018089 293 DG-DDNVKALFRQGQAYMALND-VDAAVESFEKALKL 327 (361)
Q Consensus 293 ~~-p~~~ka~~~~g~~~~~~~~-~~~A~~~~~~a~~l 327 (361)
.. .-+.-.|..+-.++...|+ .++|.+.|++..+.
T Consensus 194 ~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 43 2367777777778888887 57888888887764
No 304
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.33 E-value=5.1 Score=39.56 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=46.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 273 ~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
..++.+++..|..++...-.......++.|.+|.++..+|+.++|...|+++.+
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345779999999999876665456788999999999999999999999998875
No 305
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=74.08 E-value=3.2 Score=33.56 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=27.1
Q ss_pred EEEEEEeCCeeee-eEEEEEeCCCCchhHHHHHHhh
Q 018089 6 CFLDISIGVELEG-RIIVEIYNDVIPKTAENFRALC 40 (361)
Q Consensus 6 ~~~~~~~~~~~~g-~i~i~L~~~~~P~~~~nf~~l~ 40 (361)
-|+.|++... | +++.+|..+.||+||+-|+++-
T Consensus 22 r~i~itl~~~--g~~~~A~Lldd~APkTcaA~~~~L 55 (188)
T 3kop_A 22 RYINITLEKR--GVTCKALLLDDVAPRTSKAVWDAL 55 (188)
T ss_dssp CEEEEEETTT--TEEEEEEECTTTSHHHHHHHHHHC
T ss_pred eEEEEEEecC--CeEEEEEEccccChHHHHHHHHhC
Confidence 4677887753 4 4889999999999999999975
No 306
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=71.79 E-value=2.9 Score=33.16 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=61.9
Q ss_pred EEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCCCccC
Q 018089 8 LDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGGESIY 87 (361)
Q Consensus 8 ~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~~~~~ 87 (361)
+.|++++ ..++++|+++.||+||.-|+++-= +.... .+- .+ -+-+ ++....
T Consensus 32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP--------------l~~~~-~~~-g~-E~y~-~lp~~l-------- 82 (153)
T 2nnz_A 32 LRIRFES---AECEVELYEEWAPETVRAIADALP--------------IKSTA-NRW-GD-EIYF-TTQVAV-------- 82 (153)
T ss_dssp EEEEETT---EEEEECCCTTSCHHHHHHHHHTCS--------------EEEEE-EEE-TT-EEEE-CCSCCC--------
T ss_pred EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCC--------------cEEEH-Hhh-CC-cEEE-ECCCCC--------
Confidence 6677787 679999999999999999999752 22222 221 11 1111 111000
Q ss_pred CCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCC------CCceEEeEEecChHHHHHH
Q 018089 88 GLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLD------GKHVVFGRVIKGMGVVRSI 150 (361)
Q Consensus 88 ~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld------~~~~vfG~v~~g~~vl~~i 150 (361)
... |+. .....+|-|+..-.+ ..+.|..++.|... ..-.+||+|.+|++.+..+
T Consensus 83 --~~~-en~-~~~~~~GDI~Yy~pg-----~~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 83 --EKE-ENS-KDVVELGDVAYWIPG-----KAICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp --CCS-SCC-BCCCCTTEEEEETTT-----TEEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred --CCC-CCC-cccCCCCeEEEeCCC-----CEEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 011 221 123457888887543 34777777764322 2357899999998766544
No 307
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.53 E-value=21 Score=27.86 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 018089 267 FTNSSACKL-KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 267 ~~nla~~~~-~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 337 (361)
|.++|.-++ .+|+-++--..+...+.-.+-++..++.+|.+|..+|+..+|.+.+.+|.+- .-+++-..
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k--G~kEAC~~ 162 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK--GEKEACNA 162 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh--hhHHHHHH
Confidence 344444333 3455444444444445556667999999999999999999999999999875 33444333
No 308
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=69.53 E-value=43 Score=31.49 Aligned_cols=104 Identities=8% Similarity=0.018 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccCCCCccch-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CC
Q 018089 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKS-SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--------GD 295 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~--------~p 295 (361)
....+.|.....++...+.. +..+..++. ........-+.+++-.+|+++++..-|.......-.. .|
T Consensus 139 ~~~le~~a~~i~k~F~~cl~---Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p 215 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKP---PRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQ 215 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCC---C----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSC
T ss_pred hhHHHHHHHHHHHHHHHhcc---cCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCC
Confidence 45566777777777764421 111111111 1123333445577778999999988887666433221 12
Q ss_pred --CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC
Q 018089 296 --DNVKALFRQGQAYMALNDVDAAVESFEKALKL-EPND 331 (361)
Q Consensus 296 --~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l-~p~~ 331 (361)
..+.-+|.+|..+...++|.+|.+.+..|++. .|.+
T Consensus 216 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 216 LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 12567888999999999999999999999998 7765
No 309
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=69.17 E-value=9.8 Score=26.89 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=28.3
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
..++.+...|..+|+.++|.+|+..++++..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 4678888899999999999999999999986
No 310
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=67.37 E-value=8.5 Score=27.44 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~ 289 (361)
.+..+|..+++.|+|++||++..+
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHH
Confidence 344455555555555555554433
No 311
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=64.26 E-value=53 Score=34.45 Aligned_cols=94 Identities=9% Similarity=-0.111 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q 018089 265 QIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--EPNDGGIKKEL 338 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Ai~~~~~al~~----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 338 (361)
..|+-+-.+|.+.|+.++|...+.+.-+. -.-+...|.-+-..|...|+.++|.+.|++..+. .|+ ...+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHHH
Confidence 45677778889999999999999765432 2337788999999999999999999999998764 454 4444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 018089 339 AVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 339 ~~~~~~~~~~~~~~k~~~~~~ 359 (361)
-.+..+.+...++..+.++.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHH
Confidence 444444333222223444444
No 312
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=62.68 E-value=46 Score=30.36 Aligned_cols=122 Identities=13% Similarity=0.015 Sum_probs=68.5
Q ss_pred hHHHHhhHHHHHhccHHHHhh------------hHHHHHHHHHHHHHhhhhcccc--CCC--CccchhhHHHHHHHHHHH
Q 018089 206 SWWMNAVDSIKVFGNEHYKKQ------------DYKMALRKYRKALRYLDICWEK--EGI--DEGKSSSLRKTKSQIFTN 269 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~g------------~y~~A~~~y~~al~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~n 269 (361)
.-..+.+..++++|..+...+ ..+.|..+|++|.-++.+.... +.. ..+....+++....++..
T Consensus 108 sl~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~ 187 (376)
T 3r9m_A 108 DAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVI 187 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHH
Confidence 345566777777777765432 3688999999988777655332 110 111122244555555554
Q ss_pred HHHHHHhcCCH-----------------HHHHHHHHHHhhc-CC-------Cc------------hhHHHHHHHHHHhcC
Q 018089 270 SSACKLKLGDL-----------------KGALLDTEFAMRD-GD-------DN------------VKALFRQGQAYMALN 312 (361)
Q Consensus 270 la~~~~~l~~~-----------------~~Ai~~~~~al~~-~p-------~~------------~ka~~~~g~~~~~~~ 312 (361)
++....+.--+ .++...|++|... .. .. +.|+|+.|..+...+
T Consensus 188 l~LAQAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~ 267 (376)
T 3r9m_A 188 QCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASD 267 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44432221111 1233345555432 11 11 457777888888889
Q ss_pred CHHHHHHHHHHHHhh
Q 018089 313 DVDAAVESFEKALKL 327 (361)
Q Consensus 313 ~~~~A~~~~~~a~~l 327 (361)
++-+|+..|+.|.+.
T Consensus 268 k~GeaIa~L~~A~~~ 282 (376)
T 3r9m_A 268 KCGEAIRSLQEAEKL 282 (376)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 999998888877654
No 313
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.27 E-value=14 Score=27.63 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHHH
Q 018089 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----DGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~----~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+.+|-.+..+||.+|.. |.--..+.-|.+++..|++++.+..+ ....|.....++.+++.....
T Consensus 19 h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~ 86 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQN 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 45555556666655531 22222223344445555566666542 234555555555555544433
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.67 E-value=14 Score=35.44 Aligned_cols=74 Identities=14% Similarity=-0.039 Sum_probs=55.8
Q ss_pred hhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018089 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~a 290 (361)
.+.-+..+=..|...+.|++|.....++.- +. . ...+...+..++.+|.++.-+++|.+|.+++..|
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~----~-------~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEY--PH----T-------DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CT----T-------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Cc----c-------cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345555566677788889999988888742 10 0 0124456788899999999999999999999999
Q ss_pred hhcCCCc
Q 018089 291 MRDGDDN 297 (361)
Q Consensus 291 l~~~p~~ 297 (361)
++..|.+
T Consensus 297 ~rkap~~ 303 (523)
T 4b4t_S 297 IRKAPHN 303 (523)
T ss_dssp TSSCSCS
T ss_pred HHhCCcc
Confidence 9988755
No 315
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.39 E-value=29 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=15.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 018089 304 QGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 332 (361)
+|..+...|++++|...|-+|+...|+=.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 45555555555555555555555555433
No 316
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=57.31 E-value=28 Score=29.36 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=44.0
Q ss_pred HhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhh
Q 018089 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMR 292 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al~ 292 (361)
..|+-+.|...|+.|..++... ....+|....+.+|.+..|+. +++.++|...+.+|+.
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEH----------PDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHC----------GGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhh----------CCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455788999999999876432 112566667778888887665 6899999999999976
No 317
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=55.10 E-value=31 Score=34.16 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 018089 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 298 ~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 349 (361)
..+...+|...+..|+|.-|.+.+..++..+|+|..++..++.+.+.+..+.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4567778888889999999999999999999999999999999888877543
No 318
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=54.89 E-value=26 Score=29.74 Aligned_cols=53 Identities=15% Similarity=0.008 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
+.|...|++|+.++... ....+|....+.+|.+..|+. +++.++|+..+.+|+
T Consensus 147 e~a~~aY~~A~~iA~~~----------L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56888899998866421 112466777778888887766 688888888777766
No 319
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=53.22 E-value=35 Score=28.12 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchh
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~k 299 (361)
...+..++.+|..++..++|.+|-+++..|++..|....
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 355678899999999999999999999999998876543
No 320
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=53.17 E-value=22 Score=24.76 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhCCC
Q 018089 317 AVESFEKALKLEPN 330 (361)
Q Consensus 317 A~~~~~~a~~l~p~ 330 (361)
|++.|.++++..|+
T Consensus 37 aie~l~~~lk~e~d 50 (83)
T 2v6y_A 37 AIEVLSQIIVLYPE 50 (83)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCC
Confidence 33344444444443
No 321
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.05 E-value=23 Score=37.55 Aligned_cols=66 Identities=11% Similarity=-0.184 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc-CC----------------------CchhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRD-GD----------------------DNVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~-~p----------------------~~~ka~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
..+-+|.|++..|++++|..++.+|-.. .. .-+..|+.....+...+.++.+++.-+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477999999999999999999888421 11 112455666778888999999999999
Q ss_pred HHHhhCCCC
Q 018089 323 KALKLEPND 331 (361)
Q Consensus 323 ~a~~l~p~~ 331 (361)
.|++..+.+
T Consensus 924 lAi~~~~~~ 932 (1139)
T 4fhn_B 924 LADASKETD 932 (1139)
T ss_dssp HHHHHCCSC
T ss_pred HHHHhccCC
Confidence 999876543
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.89 E-value=44 Score=34.72 Aligned_cols=68 Identities=10% Similarity=-0.155 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCC----------------------chhHHHHHHHHHHhcCCHHHHHHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMR-DGDD----------------------NVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~-~~p~----------------------~~ka~~~~g~~~~~~~~~~~A~~~~~ 322 (361)
.-+-+|.+|+..|++++|..++++|-. +... ....|......+...+-++-+++.-+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 347799999999999999999988762 1110 12355667788889999999999999
Q ss_pred HHHhhC-CCCHH
Q 018089 323 KALKLE-PNDGG 333 (361)
Q Consensus 323 ~a~~l~-p~~~~ 333 (361)
.|+... ++++.
T Consensus 922 lAI~~~~~dd~~ 933 (950)
T 4gq2_M 922 LADASKETDDED 933 (950)
T ss_dssp HHHHTCCSCCHH
T ss_pred HHHhhcccCCcc
Confidence 999754 45554
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.85 E-value=82 Score=24.93 Aligned_cols=70 Identities=7% Similarity=0.047 Sum_probs=47.5
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIF-TNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
......|..+|..|+|-+|.+.++.+-.-. ...+. ...-....+. .-.|..+.+.|++..|...+.+|+
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~------~~~~~----er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNY------GRGNT----ESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTT------CSSSH----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhc------CCCch----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344678899999999999999999876511 00100 1222333344 445556677899999999999998
Q ss_pred h
Q 018089 292 R 292 (361)
Q Consensus 292 ~ 292 (361)
.
T Consensus 103 ~ 103 (161)
T 2ijq_A 103 Q 103 (161)
T ss_dssp H
T ss_pred H
Confidence 6
No 324
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=51.52 E-value=33 Score=29.57 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
+.|...|++|+.++ .. ....+|....+.+|.+..|+. +++.++|+..+.+|+
T Consensus 173 e~a~~aY~~A~~iA-~~----------L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 173 EDALKAYKDATVVA-KD----------LEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHHHHHHH-TT----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-Hh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56888899999866 21 112567777788888888776 789999988887776
No 325
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=49.63 E-value=31 Score=26.92 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=40.4
Q ss_pred CchhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCC
Q 018089 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG 250 (361)
Q Consensus 203 ~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~ 250 (361)
.++...+..+..+...|..+...|+++.|.-.|.+++.++-...+.++
T Consensus 31 i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHp 78 (146)
T 2xze_A 31 IPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHR 78 (146)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCc
Confidence 357788899999999999999999999999999999887755544443
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.45 E-value=41 Score=34.93 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=62.0
Q ss_pred HHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCc--cchhh------HHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 018089 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDE--GKSSS------LRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~nla~~~~~l~~~~~Ai~~ 286 (361)
-+-+|..++..|++++|..+|++|-.-+. ....... +.... ........|...+..+-+.+-++.++..
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~---~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLY---SHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTC---SSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcc---cCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 37789999999999999999999853211 0000000 00000 1112335788899999999999999999
Q ss_pred HHHHhhcC-CCc----hhHHHHHHHHHHhcC
Q 018089 287 TEFAMRDG-DDN----VKALFRQGQAYMALN 312 (361)
Q Consensus 287 ~~~al~~~-p~~----~ka~~~~g~~~~~~~ 312 (361)
++.||..- +++ ...|.++-.+...+|
T Consensus 920 A~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 920 SLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 99999753 443 236666655555443
No 327
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=49.39 E-value=35 Score=29.46 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
+.|...|++|+.++... ....+|....+.+|.+..|+. +++.++|+..+.+|+
T Consensus 152 e~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTE----------LAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----------CCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 57888999999876421 112567777888888888776 699999988887766
No 328
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=49.15 E-value=36 Score=29.31 Aligned_cols=53 Identities=15% Similarity=0.008 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
+.|...|++|+.++... ....+|....+.+|.+..|+. +++.++|+..+++|+
T Consensus 173 e~a~~aY~~A~~iA~~~----------L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888888765321 112466777777888877666 688888877776665
No 329
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=49.06 E-value=1.1e+02 Score=27.76 Aligned_cols=64 Identities=17% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHHHHHHHhhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 283 Ai~~~~~al~~-----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~~~ 346 (361)
++..|.+||.. +....--|..+|-.+++.+++.+|++.+..|... .-+|.++++.+-++...+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneli 350 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDLI 350 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHh
Confidence 56666666643 2234666777888999999999999998887664 2346778877777655443
No 330
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=48.96 E-value=35 Score=24.46 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=29.9
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~ 243 (361)
.++.-..-...-.+|..+...|+++.|+.++-+||.+++
T Consensus 13 ~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 13 AEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 334333444556789999999999999999999999553
No 331
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=48.91 E-value=37 Score=29.05 Aligned_cols=53 Identities=11% Similarity=-0.014 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
+.|...|++|..++... ....+|....+.+|.+..|+. +++.++|+..+.+|+
T Consensus 148 ~~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEH----------MQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66888899998866421 112467777778888887766 688888888777765
No 332
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.77 E-value=14 Score=25.46 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.9
Q ss_pred hHHHHHhccHHHHhhhHHHHHHHHHHHHHhhh
Q 018089 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~ 243 (361)
......+|..+--.|+|+.|+.+|+.++..+.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~ 43 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMN 43 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 34455678888889999999999999998554
No 333
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.15 E-value=24 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhh
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~ 243 (361)
...-.+|..+...|++++|+.++-+|+...+
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3445689999999999999999999999553
No 334
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=47.46 E-value=67 Score=22.21 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhCCC
Q 018089 317 AVESFEKALKLEPN 330 (361)
Q Consensus 317 A~~~~~~a~~l~p~ 330 (361)
|++.|..+++..|+
T Consensus 45 aie~l~~alk~e~d 58 (83)
T 2w2u_A 45 AIEVLAQLVSLYRD 58 (83)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCCC
Confidence 33344444444544
No 335
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.16 E-value=48 Score=27.31 Aligned_cols=60 Identities=20% Similarity=0.156 Sum_probs=43.6
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG 282 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~ 282 (361)
+.++-.+-.|..++-+++|.+|.+++.+|++.++.. .......++..+-.|.+-+|+...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-------------~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-------------SQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-------------CHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-------------HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 367788999999999999999999999999965422 123344455555566666777543
No 336
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=46.26 E-value=88 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=6.5
Q ss_pred HHHHHHHHhhCCCCHH
Q 018089 318 VESFEKALKLEPNDGG 333 (361)
Q Consensus 318 ~~~~~~a~~l~p~~~~ 333 (361)
++.|..+++..+.+..
T Consensus 45 ie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 45 VQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHhccCCHH
Confidence 3333334444444443
No 337
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=44.14 E-value=1.8e+02 Score=26.20 Aligned_cols=121 Identities=15% Similarity=0.031 Sum_probs=68.6
Q ss_pred hhHHHHhhHHHHHhccHHHHhh---------hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 275 (361)
.....+.+..++++|..+...+ ..+.|..+|++|.-++.+....-.. .....+++....++.+++....
T Consensus 110 ~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~l~~~~~~--~~~~Dls~~~l~~L~~l~LAQA 187 (363)
T 3rau_A 110 EDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQ--AYSVDMSRQILTLNVNLMLGQA 187 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCS--CSSGGGSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcCCHHHHHHHHHHHHHHH
Confidence 3445667888888888875543 4788999999998877655443211 1122245555555555544333
Q ss_pred hcCCHHH-----------------HHHHHHHHhhc---CC----------C------------chhHHHHHHHHHHhcCC
Q 018089 276 KLGDLKG-----------------ALLDTEFAMRD---GD----------D------------NVKALFRQGQAYMALND 313 (361)
Q Consensus 276 ~l~~~~~-----------------Ai~~~~~al~~---~p----------~------------~~ka~~~~g~~~~~~~~ 313 (361)
+.--+.+ +...|++|... .+ . .+.|+|+.|......++
T Consensus 188 QE~~~~Kai~~~~k~~liAkLa~q~~~~Y~~a~~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k 267 (363)
T 3rau_A 188 QECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQK 267 (363)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 2111222 22344444321 01 1 13467777777777888
Q ss_pred HHHHHHHHHHHHhh
Q 018089 314 VDAAVESFEKALKL 327 (361)
Q Consensus 314 ~~~A~~~~~~a~~l 327 (361)
+-+|+..|+.|.+.
T Consensus 268 ~GeaIa~L~~A~~~ 281 (363)
T 3rau_A 268 FGERVAYFQSALDK 281 (363)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766543
No 338
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=43.10 E-value=1.1e+02 Score=27.88 Aligned_cols=121 Identities=9% Similarity=-0.047 Sum_probs=65.5
Q ss_pred HHHHhhHHHHHhccHHHHhh---------hHHHHHHHHHHHHHhhhhccccC--CCCccchhhHHHHHHHHHHHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~ 275 (361)
...+.+..++++|-.+...+ ..+.|..++++|.-++.+....- .........+++....++.+++....
T Consensus 137 l~fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQA 216 (380)
T 3c3r_A 137 LGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQA 216 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCHHHHHHHHHHHHHHH
Confidence 45566777777777765422 26888899998887765543321 00011111245555555554444332
Q ss_pred hcCCHH-----------------HHHHHHHHHhh-------cCCCc------------hhHHHHHHHHHHhcCCHHHHHH
Q 018089 276 KLGDLK-----------------GALLDTEFAMR-------DGDDN------------VKALFRQGQAYMALNDVDAAVE 319 (361)
Q Consensus 276 ~l~~~~-----------------~Ai~~~~~al~-------~~p~~------------~ka~~~~g~~~~~~~~~~~A~~ 319 (361)
+.--+. ++...|++|.. +++.+ +.|+|..|......+++-+|+.
T Consensus 217 QE~~~~Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa 296 (380)
T 3c3r_A 217 QEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIA 296 (380)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 211111 12233444432 11222 3466777777788889888888
Q ss_pred HHHHHHhh
Q 018089 320 SFEKALKL 327 (361)
Q Consensus 320 ~~~~a~~l 327 (361)
.|+.|.+.
T Consensus 297 ~L~~A~~~ 304 (380)
T 3c3r_A 297 RLQHAAEL 304 (380)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777653
No 339
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=42.85 E-value=82 Score=21.87 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018089 317 AVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 317 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++..-.++++.+|+|+..+..+.....+..-....+
T Consensus 29 ~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaq 64 (85)
T 2ca5_A 29 ELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQ 64 (85)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455567777666555555444444333333
No 340
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=42.14 E-value=31 Score=32.35 Aligned_cols=31 Identities=13% Similarity=-0.052 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
....++..+|.+|+.+++|++|+..++++|.
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4556888999999999999999999999985
No 341
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=42.11 E-value=1.2e+02 Score=30.27 Aligned_cols=120 Identities=8% Similarity=-0.054 Sum_probs=66.5
Q ss_pred HHHHhhHHHHHhccHHHHh---------hhHHHHHHHHHHHHHhhhhccccC--CCCccchhhHHHHHHHHHHHHHHHHH
Q 018089 207 WWMNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~ 275 (361)
...+.+..++++|..+... ...+.|..+|++|.-++.+..... .........+.+....++.+++.+..
T Consensus 122 l~fE~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQA 201 (704)
T 2xs1_A 122 LGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQA 201 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCHHHHHHHHHHHHHHH
Confidence 4556677777777776542 236889999999887776543321 00011112255555566555544332
Q ss_pred hcCCHH-----------------HHHHHHHHHhhc-------CCCc------------hhHHHHHHHHHHhcCCHHHHHH
Q 018089 276 KLGDLK-----------------GALLDTEFAMRD-------GDDN------------VKALFRQGQAYMALNDVDAAVE 319 (361)
Q Consensus 276 ~l~~~~-----------------~Ai~~~~~al~~-------~p~~------------~ka~~~~g~~~~~~~~~~~A~~ 319 (361)
+.--|. ++..+|+.|... .+.+ +.|+|..|......+++-+|+.
T Consensus 202 QE~~~~Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa 281 (704)
T 2xs1_A 202 QEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIA 281 (704)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHH
Confidence 211111 122234444321 1222 3466777777778889999998
Q ss_pred HHHHHHh
Q 018089 320 SFEKALK 326 (361)
Q Consensus 320 ~~~~a~~ 326 (361)
.++.|..
T Consensus 282 ~L~~A~~ 288 (704)
T 2xs1_A 282 RLQHAAE 288 (704)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 342
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=41.58 E-value=1.6e+02 Score=27.33 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=44.8
Q ss_pred HHHHHHHHhhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 283 Ai~~~~~al~~-----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~~~ 346 (361)
++..|.+||.. .-...--|..+|-.+++.+++.+|++.+..|... .-+|.++++.+-++...+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneli 372 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVI 372 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhh
Confidence 55555666543 2234566777888999999999999999887654 2357788888777655543
No 343
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=41.54 E-value=57 Score=28.19 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhc
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMRD 293 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al~~ 293 (361)
-+.|.+.|++|+.++.... +....+|....+.+|.+..|+. +++.++|+..+++|+.-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L--------~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFL--------EKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------TTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--------CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3667888988888663210 0012567777778888888775 68888888887777643
No 344
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=41.33 E-value=30 Score=32.45 Aligned_cols=32 Identities=25% Similarity=0.164 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
.....++..+|.+|+.+++|++|+..++++|.
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34567888899999999999999999999985
No 345
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=41.15 E-value=36 Score=33.74 Aligned_cols=50 Identities=14% Similarity=-0.001 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~ 315 (361)
....+|...+..|+|.-|.+.++.++..+|++..|..-++.+|.++|...
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45677888889999999999999999999999999999999999988543
No 346
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=40.83 E-value=58 Score=27.62 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Ai~~~~~al 291 (361)
-+.|...|++|..++... ....+|....+.+|.+..|+. +++.++|+..+.+|+
T Consensus 149 ~e~a~~aY~~A~~iA~~~----------L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKE----------MPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH----------SCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----------CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356788899988866421 112467777777888877664 588888887776665
No 347
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.53 E-value=19 Score=32.62 Aligned_cols=48 Identities=10% Similarity=-0.023 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
++..|.+|+......+ ....+--|..+|.++++.+++.+|+.....|-
T Consensus 276 ~l~L~~~AI~sa~~yY-------------~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREY-------------SDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHS-------------TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------------ccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 7888999998766552 33345568889999999999999999876665
No 348
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=40.41 E-value=1.2e+02 Score=23.17 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=59.5
Q ss_pred CEEEEEEEeCCeeeeeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecCceEEeCcCCCCCCCCC
Q 018089 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKGFMIQGGDISAGDGTGG 83 (361)
Q Consensus 4 ~~~~~~~~~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (361)
..+.+++..++ ..|+.+|+++ |.|+.-|++.-=-. +..-.|- .-++=-+|-.. . +
T Consensus 11 ~~~~~~~~~~~---~~v~a~L~Dn--p~Ta~~~~~~LPl~-------~~~~~~g-~E~y~~~p~~l-~---------~-- 65 (136)
T 1zx8_A 11 HHMRVELLFES---GKCVIDLNEE--YEVVKLLKEKIPFE-------SVVNTWG-EEIYFSTPVNV-Q---------K-- 65 (136)
T ss_dssp CEEEEEEECSS---CEEEEEEETT--SHHHHHHHHHCSEE-------EECEESS-SEEEEECSCCC-C---------C--
T ss_pred ceeEEEEeeCC---cEEEEEEcCC--HHHHHHHHHHCCcE-------EEHHHhC-CcEEEECCccC-C---------C--
Confidence 34556666664 6799999766 88999999875321 1111232 22222222111 0 0
Q ss_pred CccCCCCCCCCCcCCCCCCceEEEeeeCCCCCCCcceEeecCCCCCCC------CCceEEeEEecChHHHHHH
Q 018089 84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLD------GKHVVFGRVIKGMGVVRSI 150 (361)
Q Consensus 84 ~~~~~~~~~~e~~~~~~~~~g~~~~~~~~~~~~~sqF~i~~~~~~~ld------~~~~vfG~v~~g~~vl~~i 150 (361)
+|+.. .-..+|-|+..-. +.-|.|..++.|... ..-.++|+|.+|++.+..+
T Consensus 66 ---------~e~~~-~~~~~GDIaYw~p-----gg~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 66 ---------MENPR-EVVEIGDVGYWPP-----GKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp ---------CSSEE-SSBCTTEEEEEGG-----GTEEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred ---------CCCCC-ccCCCCcEEEeCC-----CCEEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 01111 1124688887744 335777777765332 2368899999998766543
No 349
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=38.83 E-value=1.6e+02 Score=26.75 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=65.6
Q ss_pred HHHHhhHHHHHhccHHHHhh------hHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 207 WWMNAVDSIKVFGNEHYKKQ------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
...+.+..++++|-.+...+ ..+.|..++++|.-++.+....-... ....+++....++.+++....+.--+
T Consensus 118 l~fE~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~--~~~Dls~~~l~~L~~l~LAQAQE~~~ 195 (392)
T 1zb1_A 118 LAFEKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNS--PSVDLQSENTRFLANICHAEAQELFV 195 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCC--SSGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777666664433 57889999999988777654432211 12225555555555544433221111
Q ss_pred H--------------------HHHHHHHHHhh---cCC--------Cc-------------hhHHHHHHHHHHhcCCHHH
Q 018089 281 K--------------------GALLDTEFAMR---DGD--------DN-------------VKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 281 ~--------------------~Ai~~~~~al~---~~p--------~~-------------~ka~~~~g~~~~~~~~~~~ 316 (361)
. ++...|++|.. ..+ .. +.|+|..|......+++-+
T Consensus 196 ~Kai~~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~Ge 275 (392)
T 1zb1_A 196 LKLLNDQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGE 275 (392)
T ss_dssp HHHTTSTTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTH
T ss_pred HHHHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 1 12234444442 121 01 3366667777777888888
Q ss_pred HHHHHHHHHh
Q 018089 317 AVESFEKALK 326 (361)
Q Consensus 317 A~~~~~~a~~ 326 (361)
|+..++.|.+
T Consensus 276 aIa~L~~A~~ 285 (392)
T 1zb1_A 276 AIAFLDFSMQ 285 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 350
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=38.73 E-value=35 Score=32.14 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
....++..+|.+|+.+++|++|+..++++|..
T Consensus 200 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 200 NYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 45568889999999999999999999999853
No 351
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=38.55 E-value=1e+02 Score=21.80 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=37.6
Q ss_pred HHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
...|..+|..|+|-+|.+.++.+-.-.+ .....-....+..-.|..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~------------~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKAT------------GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC------------CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3467788899999999998888766110 0001112233334444445556776 7777777764
No 352
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=38.41 E-value=36 Score=23.99 Aligned_cols=36 Identities=8% Similarity=-0.176 Sum_probs=30.5
Q ss_pred chhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHH
Q 018089 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239 (361)
Q Consensus 204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al 239 (361)
...+.++.|..+.+.|..++++|++..|+.++.=+-
T Consensus 31 ~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 66 (87)
T 2pmr_A 31 DEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAH 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999999999876553
No 353
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=38.37 E-value=2.5e+02 Score=26.09 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHHHhhc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHH
Q 018089 283 ALLDTEFAMRD-----GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 283 Ai~~~~~al~~-----~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~~~~~~~ 346 (361)
+++.+++||.. .....--|..+|-.++..++|.+|++.+..+... .-+|.++++.+.++...+.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIaneli 357 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVI 357 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHhh
Confidence 34455555532 2234556677788888899999999999888664 3457788887776655544
No 354
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=38.27 E-value=35 Score=24.00 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=30.1
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
..+.++.|..+.+.|..++++|++..|+.++.=+--
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~G 63 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWA 63 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778899999999999999999999988765543
No 355
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=38.07 E-value=22 Score=32.91 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
++..|.+|+...... .....+--|..+|.++++.+++.+|+.....|-
T Consensus 298 ~~~L~~~AI~sa~~~-------------Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTY-------------YRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHH-------------STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------hccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 678888888866655 233345668899999999999999998776654
No 356
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=37.95 E-value=58 Score=20.52 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=31.0
Q ss_pred hHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhh
Q 018089 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~ 242 (361)
.+.+..|+.+-.-+.....-.+...|++..++||+++
T Consensus 14 ~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL 50 (53)
T 2rkl_A 14 ASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLL 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 3456678888888888899999999999999999854
No 357
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.84 E-value=44 Score=23.93 Aligned_cols=28 Identities=14% Similarity=0.007 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p 295 (361)
..+|..++..|+++.|+.++-+||...|
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 4455555555555555555555555444
No 358
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=37.62 E-value=22 Score=32.84 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
+++.|++|++.....+ .....-.|..+|.++.+.++|.+|+..+..|-
T Consensus 283 ~~~Lf~~AI~~ar~~Y-------------~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYY-------------RDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHHHHHS-------------TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-------------ccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 5677888887665542 23345678899999999999999999987775
No 359
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=37.34 E-value=1e+02 Score=21.40 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 018089 305 GQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 305 g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
|.-.-..|+|++|+..|..+++
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333445555555555554443
No 360
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=36.76 E-value=72 Score=20.36 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018089 329 PNDGGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 329 p~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
..++.+...-.+....+.++++..+..|++|
T Consensus 5 ~kdpda~kke~E~~eAlrq~Ee~Rk~Kh~kM 35 (63)
T 3rk3_E 5 SKLPDAAKKFEEAQEALRQAEEERKAKYAKM 35 (63)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777888887777777776
No 361
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=35.74 E-value=1.1e+02 Score=29.01 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 280 LKGALLDTEFAMRDGDD-----------NVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p~-----------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
|+..+.+++.|+..=|. ..-|+.-+|.+|+..++|++|.+..++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777754332 2357788999999999999999999999863
No 362
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=35.66 E-value=1.2e+02 Score=21.54 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018089 314 VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 314 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
..+++..-.++++.+|+|+.++..+.....+..-....+-...
T Consensus 32 ~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSnti 74 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAV 74 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445566778887776666665555554444444433
No 363
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=35.63 E-value=32 Score=32.70 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
|+..++-++.|+.+++...... .........++..+|.+|+.+++|++|+..++++|..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~-------~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRD-------AKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCS-------STTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcc-------cCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3445555666666554321110 0122345578889999999999999999999999853
No 364
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=35.16 E-value=8 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
...|..+...|..+=+.|+|++|+.+|..|++++...
T Consensus 20 ~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 20 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3456677788888889999999999999999987644
No 365
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.88 E-value=2.1e+02 Score=27.92 Aligned_cols=118 Identities=8% Similarity=-0.140 Sum_probs=68.2
Q ss_pred ccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCch
Q 018089 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ 298 (361)
+..-..+++.+.|...+.+.-+-.. . .......++..+|.-.+..+...++..++.++.....+..
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~-------~-------~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQ-------L-------NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS 286 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTT-------C-------CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccC-------C-------CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH
Confidence 4444556677888888876643110 0 1112223344444444445546677788887776555444
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
..-.+.+.+ +..++++.|...|++...-.........-++.+...+++..++
T Consensus 287 ~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a 338 (618)
T 1qsa_A 287 LIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEA 338 (618)
T ss_dssp HHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHH
Confidence 444444444 4669999999999776543334556677777776665544443
No 366
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=34.07 E-value=1.1e+02 Score=21.52 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=22.7
Q ss_pred HHhhHHHHHhccHHHHh---hhHHHHHHHHHHHHHhhh
Q 018089 209 MNAVDSIKVFGNEHYKK---QDYKMALRKYRKALRYLD 243 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~---g~y~~A~~~y~~al~~~~ 243 (361)
.+.|-.+.+.|...=.. |+-++|+++|++.+.-+.
T Consensus 13 h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~ 50 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELE 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH
Confidence 34455555566666556 777778888888776443
No 367
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=33.54 E-value=51 Score=30.96 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
.....++..+|.+|+.+++|++|+..++++|.
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34557888999999999999999999999984
No 368
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.26 E-value=51 Score=31.04 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
......++..+|.+|+.+++|++|+..++++|..
T Consensus 193 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 193 LFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3455678889999999999999999999999953
No 369
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=33.01 E-value=1.3e+02 Score=21.23 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 304 QGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 304 ~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
.|.-++..++|-+|...|+++..+
T Consensus 59 eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 59 EGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHcc
Confidence 334444555555555555555443
No 370
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=32.82 E-value=81 Score=29.40 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 280 LKGALLDTEFAMRDGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p--------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
|+..+.+++.|+..=| +..-|+.-+|.+|+.+++|++|++..++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4455666666665433 23457788999999999999999999998853
No 371
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=32.82 E-value=1.3e+02 Score=21.19 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhCCC
Q 018089 317 AVESFEKALKLEPN 330 (361)
Q Consensus 317 A~~~~~~a~~l~p~ 330 (361)
|++.|..+++..|+
T Consensus 41 Aie~l~~alk~e~~ 54 (93)
T 1wfd_A 41 GIDMLLQVLKGTKE 54 (93)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCC
Confidence 33344444444443
No 372
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.74 E-value=1.8e+02 Score=22.90 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc------hhHHHH-HHHH--HHhcCCHHHHHHHHHHHHhh
Q 018089 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFR-QGQA--YMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Ai~~~~~al~~~p~~------~ka~~~-~g~~--~~~~~~~~~A~~~~~~a~~l 327 (361)
+..+..++..|+|-+|-+.++.+-...+.. .+++.. +|.+ +...|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344566677799999999999999876544 455555 5544 45579999999999999873
No 373
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=32.73 E-value=96 Score=29.45 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~ 293 (361)
....++..+|.+|+.+++|++|+..++++|..
T Consensus 180 tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 180 TKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45568889999999999999999999999964
No 374
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.08 E-value=2.1e+02 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=19.6
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCC
Q 018089 300 ALFRQGQAY--MALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 300 a~~~~g~~~--~~~~~~~~A~~~~~~a~~l~p~~ 331 (361)
.+..+..++ +..|+|++|++.+++ +.+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344444444 677888888888876 4556654
No 375
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=30.93 E-value=44 Score=31.15 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 018089 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al 291 (361)
......++..+|.+|+.+++|++|+..++++|
T Consensus 197 r~tk~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 197 HATQAAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp SCBHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 34556788899999999999999999999987
No 376
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=30.77 E-value=1e+02 Score=28.88 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCCC--------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018089 280 LKGALLDTEFAMRDGDD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p~--------~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 328 (361)
|+..+.+++.|+..=|. ..-|+.-+|.+|+.+++|++|++..++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 45667777777765442 24577888999999999999999999998653
No 377
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.33 E-value=92 Score=29.06 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 280 LKGALLDTEFAMRDGD--------DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p--------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
|+..+.+++.|+.+=| +..-|+.-+|.+|+.+++|++|++..++++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455556666654323 22457788899999999999999999998763
No 378
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.21 E-value=2.7e+02 Score=25.23 Aligned_cols=103 Identities=14% Similarity=-0.034 Sum_probs=60.1
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CC
Q 018089 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD-------GD 295 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~-------~p 295 (361)
-...+.++|++..++....+............ ..........+....+..|+..++..+|....+++-.. +|
T Consensus 87 ~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~-~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~ 165 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLKAQFQELDSKKQRNNG-SKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL 165 (393)
T ss_dssp HHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCC-SSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred hhcCCHHHHHHHHHHHHHHHhhhhhhhhcccc-hhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH
Confidence 34567888988888775544221111000000 00011123456677888899999999998888777632 22
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 296 D-NVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 296 ~-~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
. ..+.|...+..|...++|.++....-.++.
T Consensus 166 ~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 166 RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1 234444456667778888877766655554
No 379
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=29.16 E-value=3.7e+02 Score=25.40 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=49.3
Q ss_pred chhHHHHhhHHHHHhc--cHHHHhhh-HHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCH
Q 018089 204 ELSWWMNAVDSIKVFG--NEHYKKQD-YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 204 ~~~~~~~~a~~~~~~G--~~~~~~g~-y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
++.+++..|+.++.++ +.--+.-+ -+.|+++|++|+.++...... -++.....+.++|..|--.|+
T Consensus 421 sL~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~t----------dd~~~v~~~~~~ak~yE~aGD- 489 (526)
T 2wb7_A 421 SLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQ----------DDYQMFLNYLNAAKKHEMAGD- 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHhhhhhhccH-
Confidence 3444455566666554 22222222 356888888888876543211 123444455555544322222
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
+|..|.-....|+.++|..+-.+|-++
T Consensus 490 --------------------yy~~AA~k~~yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 490 --------------------YYVNAARKALNGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp --------------------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 233444455668888888777766554
No 380
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.83 E-value=80 Score=24.64 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 018089 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Ai~~~~~al~~~ 294 (361)
.+.++..+|.+|-++|+..+|.+...+|.+..
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 46788999999999999999999998888654
No 381
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=28.21 E-value=2.9e+02 Score=23.89 Aligned_cols=106 Identities=8% Similarity=0.079 Sum_probs=62.5
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHH----HhcCC-
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKLGD- 279 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l~~- 279 (361)
-++.+.+..-++.+.......|+.++.+....-.+.=+....+..................+++.++... ++.++
T Consensus 15 ~~d~~sql~gly~msre~le~g~i~~sv~LLNGIIHECDRLLR~~e~~~~Lpd~FhAIYAlALl~lSELa~~a~Fk~ede 94 (346)
T 3qtm_A 15 EEDNISQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTEDISTLPKDFHAAYSSALLAVSELFEIAQKRLKET 94 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHHHHHHTHHHHGGGSCTT
T ss_pred ccchHHHHHhHHHHHHHHhhccCchhhhHHHcChHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhHHHhhHHhhccCchh
Confidence 4455667778889999999999999988887655442222211111000111112222222222222222 23332
Q ss_pred ------HHHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 018089 280 ------LKGALLDTEFAMRDGDDNVKALFRQGQAYMA 310 (361)
Q Consensus 280 ------~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~ 310 (361)
++.|++-++-.++..|++....+-++.+++.
T Consensus 95 ~~V~eFFDaALERielGLe~~p~s~~L~la~SKILlq 131 (346)
T 3qtm_A 95 NTEESYIDAAIERAQLGLDAPGNESRLFLALARAYLE 131 (346)
T ss_dssp CCHHHHHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHH
Confidence 6788888999999999998888887777664
No 382
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=27.53 E-value=48 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=27.2
Q ss_pred HhhHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
+.++.+...|..++.+|+.-+|-+.|-+|..
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAae 35 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAE 35 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3577888999999999999999999988877
No 383
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=27.34 E-value=1.2e+02 Score=19.30 Aligned_cols=51 Identities=8% Similarity=-0.062 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHhcCCHHHHH
Q 018089 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAV 318 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Ai~~~~~al~~~p~-~~ka~~~~g~~~~~~~~~~~A~ 318 (361)
+.-+|..-.-....++|....+ .|...+. ..-+-.-+...++..|+|++|+
T Consensus 9 LAe~AL~~TG~HcH~EA~tIA~-~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 9 LAELALAGTGHHCHQEAASIAD-WLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHH-HHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHccchHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3444555556667777765544 3455544 3445556677889999999886
No 384
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=27.13 E-value=1.1e+02 Score=28.83 Aligned_cols=48 Identities=21% Similarity=0.037 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcCC-----------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018089 280 LKGALLDTEFAMRDGD-----------DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 280 ~~~Ai~~~~~al~~~p-----------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l 327 (361)
|+..+.+++.|+..=| +..-|+.-+|.+|+.+++|++|+...++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455666666665333 22457788999999999999999999999875
No 385
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=27.06 E-value=62 Score=30.50 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 018089 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~ 292 (361)
....++..+|.+|+.+++|++|+..+++++.
T Consensus 178 tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 178 TQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3446788899999999999999999999984
No 386
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=26.83 E-value=1.6e+02 Score=22.64 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=32.1
Q ss_pred HHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
-.++.+......+..+..+|+++.+-....||+.++...
T Consensus 28 mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL 66 (145)
T 1vh6_A 28 MLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQEL 66 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345567788888999999999999999999999977543
No 387
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=24.97 E-value=4.4e+02 Score=24.87 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCC--------------------------
Q 018089 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-------------------------- 279 (361)
Q Consensus 226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-------------------------- 279 (361)
..+-.+|..-...|+.++.. ............++..||.+|+.|-+
T Consensus 93 ~~~Y~~I~~~N~~l~~i~~~--------~~~~~~~~~~aEa~flRA~~Yf~L~~~yG~VPl~~~~~~~~~~~~~~r~~~~ 164 (528)
T 3i4g_A 93 ETSYKRIGYCNRFLVGIQNS--------SESEKKTRMIAEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQA 164 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCCCSCCCHHHHTTCCCBCHH
T ss_pred HHHHHHHHHHHHHHHhhhcc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccccccCCCCCHH
Q ss_pred --HHHHHHHHHHHhhcCC-------------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018089 280 --LKGALLDTEFAMRDGD-------------DNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 280 --~~~Ai~~~~~al~~~p-------------~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~ 326 (361)
++..+.+++.|+..=| +..-|+.-+|.+|+..++|++|.+..++++.
T Consensus 165 ev~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 165 DILKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
No 388
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.27 E-value=2.3e+02 Score=23.58 Aligned_cols=62 Identities=11% Similarity=-0.060 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC---------HHHHHHHHHHHHhhCCCC
Q 018089 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALND---------VDAAVESFEKALKLEPND 331 (361)
Q Consensus 270 la~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~---------~~~A~~~~~~a~~l~p~~ 331 (361)
.-.+|++.|.|++|.+.+++.+.-++.+.+....+..+-...+. |+.-.+.....++..=++
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki~~fve~~~~~ 190 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHLDD 190 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhccHHHHHHHHHHHHHHHhcc
Confidence 33568899999999999999999888887777777776665543 444444445555544333
No 389
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.65 E-value=17 Score=34.10 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
.+.|..+...|..+-+.|+|++|+.+|..|++++...
T Consensus 8 ~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~ 44 (444)
T 2zan_A 8 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 44 (444)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4456677778888889999999999999999987654
No 390
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=28.98 E-value=17 Score=36.11 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 018089 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 299 ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 347 (361)
.+...+|...+..|+|.-|.+.++.++..+|+|..++..++.+.+.+..
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 3445555555666666666666666666666666666666666555543
No 391
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.22 E-value=2.6e+02 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 018089 303 RQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 303 ~~g~~~~~~~~~~~A~~~~~~ 323 (361)
+.|..|..-|+++.|--.|-+
T Consensus 45 r~A~~y~~egd~e~AYily~R 65 (146)
T 2xze_A 45 RMASIYSEEGNIEHAFILYNK 65 (146)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 334444444444444444444
No 392
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=22.94 E-value=3.2e+02 Score=25.42 Aligned_cols=47 Identities=9% Similarity=-0.113 Sum_probs=34.9
Q ss_pred HH-HHHHHHHHHhhc-CCC--------chhHHHHHHHHHHhcC---------CHHHHHHHHHHHHh
Q 018089 280 LK-GALLDTEFAMRD-GDD--------NVKALFRQGQAYMALN---------DVDAAVESFEKALK 326 (361)
Q Consensus 280 ~~-~Ai~~~~~al~~-~p~--------~~ka~~~~g~~~~~~~---------~~~~A~~~~~~a~~ 326 (361)
|+ ..+.+++.|+.. =|. ..-|+.-+|.+|+..+ +|++|++..++++.
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 55 567788888775 331 2457777888888877 89999999998886
No 393
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=22.36 E-value=2.1e+02 Score=26.55 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=50.9
Q ss_pred HHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhccccCCCCcc-------chhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 018089 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEG-------KSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~ 285 (361)
.-+..+++.+.+.++|-+|--++.....++. |........ ...........++...+..+.+-+.|+.|+.
T Consensus 36 ~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~--w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~ 113 (436)
T 2yin_A 36 RYLYKLRDLHLDCDNYTEAAYTLLLHTWLLK--WSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAIS 113 (436)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--SSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHhC--CCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3345678888999999999998865544432 221111000 0001111222344445555556677888888
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHh
Q 018089 286 DTEFAMRDGDDNVKALFRQGQAYMA 310 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~g~~~~~ 310 (361)
.|+.++........-|-.++.++..
T Consensus 114 l~k~L~~~yE~~~~Dy~~Ls~~~~~ 138 (436)
T 2yin_A 114 LCKELAEQYEMEIFDYELLSQNLIQ 138 (436)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888775543333334444444443
No 394
>3q6c_A Probable receptor YHHM; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.60A {Klebsiella variicola at-22}
Probab=22.17 E-value=65 Score=22.42 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=25.7
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCCcccccCceeEEeecC
Q 018089 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKGVRFHRVIKG 67 (361)
Q Consensus 18 g~i~i~L~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~g~~~~rv~~~ 67 (361)
.++.+.|- ..-|-.|+.|.+|. +.|.||.|+.-.|+
T Consensus 46 ~~~ef~v~-------~~~Y~~l~~Gd~G~-------Lt~QGTRF~~F~~~ 81 (83)
T 3q6c_A 46 LEVVFRLD-------APQYHALSVGDRGM-------LSYKGTAFVAFTPD 81 (83)
T ss_dssp CCEEEEEC-------HHHHHHCCTTCEEE-------EEEETTEEEEEEEC
T ss_pred ceEEEEEC-------HHHcCCCCCCCEEE-------EEEeeeEEEEEecC
Confidence 35665552 34788888887664 58999999987664
No 395
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.93 E-value=94 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=22.4
Q ss_pred eCCeeeeeEEEEEeCCCCchhHHHHHHhhcC
Q 018089 12 IGVELEGRIIVEIYNDVIPKTAENFRALCTG 42 (361)
Q Consensus 12 ~~~~~~g~i~i~L~~~~~P~~~~nf~~l~~~ 42 (361)
+.|.+.|+++++|-++ +..++..++..+.
T Consensus 59 i~~~~~G~L~v~l~G~--~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 59 AGGVKFGIMLTEMHGT--QQDTQAAIAWLQE 87 (106)
T ss_dssp ETTEEEEEEEEEEESC--HHHHHHHHHHHHH
T ss_pred ECCeeEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 6788999999999986 5566666666554
No 396
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=21.52 E-value=1.3e+02 Score=22.11 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=30.8
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
...+++.|......+..++..|.|+.|.-..++|++
T Consensus 4 ~~~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~E 39 (122)
T 1wol_A 4 VEDWIKQAERDLEEARYAKSGGYYELACFLSQQCAE 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 456788899999999999999999998888888877
No 397
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.38 E-value=1.3e+02 Score=23.89 Aligned_cols=49 Identities=6% Similarity=0.072 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018089 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 281 ~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 329 (361)
..|+.....+...+|......-++..++..+.+....+..|...+..||
T Consensus 73 ~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP 121 (175)
T 4abx_A 73 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADP 121 (175)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3455555666667777677777778888877777766666666666565
No 398
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=21.34 E-value=2e+02 Score=19.58 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=7.7
Q ss_pred hcCCHHHHHHHHHHHHh
Q 018089 310 ALNDVDAAVESFEKALK 326 (361)
Q Consensus 310 ~~~~~~~A~~~~~~a~~ 326 (361)
..|+|++|+..|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444433
No 399
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=21.21 E-value=1.1e+02 Score=28.99 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHH------hcCCHHHHHHHHHHHhh
Q 018089 264 SQIFTNSSACKL------KLGDLKGALLDTEFAMR 292 (361)
Q Consensus 264 ~~~~~nla~~~~------~l~~~~~Ai~~~~~al~ 292 (361)
..++..+|.+|+ ..++|++|+..++++|.
T Consensus 188 ~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 188 AVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 345555666555 67899999999999984
No 400
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.42 E-value=21 Score=35.57 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHH
Q 018089 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Ai~~~~~al~~~p~~~ka~~~~g~~~~~~~~~~~A 317 (361)
....+|...+..|+|+-|.+.++.++..+|++..|..-++.+|.++|...+.
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 3456777778899999999999999999999999999999999999876554
No 401
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.82 E-value=3.5e+02 Score=22.15 Aligned_cols=86 Identities=7% Similarity=-0.088 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhhccccCCCCccchhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCchhHHHHHHHHHHh
Q 018089 233 RKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--DGDDNVKALFRQGQAYMA 310 (361)
Q Consensus 233 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Ai~~~~~al~--~~p~~~ka~~~~g~~~~~ 310 (361)
..++++++.+... +.-.-++....+|...+.++ ..+...++...|..... +.-..+.-|-.-|..+..
T Consensus 58 ~lLErc~~~F~~~---------~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~ 127 (202)
T 3esl_A 58 STMERCLIYIQDM---------ETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN 127 (202)
T ss_dssp HHHHHHHHHHTTC---------GGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc---------ccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 4566666655321 11124667778888877765 23446688888877775 455667777788899999
Q ss_pred cCCHHHHHHHHHHHHhhC
Q 018089 311 LNDVDAAVESFEKALKLE 328 (361)
Q Consensus 311 ~~~~~~A~~~~~~a~~l~ 328 (361)
.|++.+|.+.|+..++..
T Consensus 128 ~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 128 AQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 999999999999999865
No 402
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=20.79 E-value=1.3e+02 Score=22.05 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=30.8
Q ss_pred hhHHHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHH
Q 018089 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
...+++.|......+..++..|.|+.|.-..++|++
T Consensus 4 ~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~E 39 (127)
T 1ufb_A 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAE 39 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 456788899999999999999999998888888877
No 403
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=20.11 E-value=2.8e+02 Score=20.81 Aligned_cols=38 Identities=3% Similarity=0.007 Sum_probs=31.9
Q ss_pred HHHhhHHHHHhccHHHHhhhHHHHHHHHHHHHHhhhhc
Q 018089 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
.++.+......+..+..+|+++++-....||+.++.+.
T Consensus 32 Lydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L 69 (131)
T 3iqc_A 32 LYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTEL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35567778888889999999999999999999987654
No 404
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.05 E-value=6.1e+02 Score=27.37 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhc----CC----HHHHHHHHHHHhh-cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018089 260 RKTKSQIFTNSSACKLKL----GD----LKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l----~~----~~~Ai~~~~~al~-~~p~~~ka~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 330 (361)
....+.+++..|.++.++ .. .++-.+.|.+.++ .++.+.|++.-...-...+++|-.|++++.++++-.|
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~- 1315 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKR- 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 334455566644444333 22 2223334444454 4667777776555555578999999999999999887
Q ss_pred CHHHHHHHHHHHHHHH
Q 018089 331 DGGIKKELAVAKKKIH 346 (361)
Q Consensus 331 ~~~~~~~l~~~~~~~~ 346 (361)
..+.+..+.++.+.++
T Consensus 1316 ~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1316 TRDHFVELAAINGALG 1331 (1354)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcC
Confidence 5566666666655554
Done!