BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018090
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
pdb|2QMX|A Chain A, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
Length = 283
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGS 177
T +AYQG PGAYSE AA + E +PC+ F+ F AV D AV+PIENS+GGS
Sbjct: 5 TNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGS 61
Query: 178 IHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGI 237
IH+NYDLLLR + I+ E + V HCLLGLPG E + SHPQAL QC +
Sbjct: 62 IHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFATHPQ 121
Query: 238 VRI-SADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296
+R +A DTAG+A+ VA ++ A+AS +A E+YGLDIL E + D++ N+TRF +A
Sbjct: 122 IRAEAAYDTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAH 181
Query: 297 E--PIIAGTD-RP----YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPL 349
E P I+ RP KTSIVF L G LF+ALA FALR I+LTKIESRP RK+
Sbjct: 182 ENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAF 241
Query: 350 RVV 352
+
Sbjct: 242 EYL 244
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 9/234 (3%)
Query: 118 TKVRVAYQGLPGAYSEAAARKAYPKCET--VPCDQFEAAFKAVELWLVDKAVLPIENSVG 175
+ V + G G ++EAA + + +PC A + V D A +PIENSV
Sbjct: 5 SAVTYTFLGPQGTFTEAALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIENSVE 64
Query: 176 GSIHRNYDLLLR-HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEM---- 230
G + D + L I+ E + + L+ PGV ++KR+ +H A AQC +
Sbjct: 65 GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124
Query: 231 TLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTR 290
L N V S+ A A ++ + A AAE GL++LAE I D+ D VTR
Sbjct: 125 HLPNADYVPGSST-AASAXGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTR 183
Query: 291 FLILAREPIIAGTDRPYKTSIVFTL-EEGPGMLFKALAVFALRDINLTKIESRP 343
F++++R + KT++V L E+ PG L + L FA R +NL++IESRP
Sbjct: 184 FILVSRPGALPERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRP 237
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 13/232 (5%)
Query: 121 RVAYQGLPGAYSEAAARKAYPKCETV--PCDQFEAAFKAVELWLVDKAVLPIENSVGGSI 178
++ Y G G +S A R+ + + E P KAV V+PIENS+ G+I
Sbjct: 5 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 64
Query: 179 HRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIV 238
+ D L + + GE++L +N L G ++K+V+S A++Q T + +
Sbjct: 65 NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQ---TTNYIHQH 121
Query: 239 RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 298
+ D Q + I E A+A + E YG + I+D NVTRFL++ +
Sbjct: 122 QFDYDYVDSTIQSLTKI-ENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 180
Query: 299 IIAGTDRPYKTSIVFTL---EEGPGMLFKALAVFALRDINLTKIESRPQRKR 347
TS+ F + + PG+L L FAL +INL+ IESRP + +
Sbjct: 181 QFDQN----ATSLXFLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTQ 228
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 16/192 (8%)
Query: 167 VLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGL--PGVLKEELKRVFSHPQA 224
++ EN+V G + N D L+ + +VG ++ VN G E + +HP
Sbjct: 61 IVAWENNVEGYVVPNLDALIDAK-DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHG 119
Query: 225 LAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD 284
LAQC+ ++ + A A A + + GE A A E+Y + + IQD
Sbjct: 120 LAQCKRFIAEHRLSTQPATSNAAACRDLIP-GEI---AFGPAICGELYDITRIGTAIQDY 175
Query: 285 DDNVTRFLILAREPIIA--------GTDRPYKTSIVFT-LEEGPGMLFKALAVFALRDIN 335
T FL+L+ +A + Y++ + L GPG+L L VF +N
Sbjct: 176 QGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLN 235
Query: 336 LTKIESRPQRKR 347
T SRP + R
Sbjct: 236 XTSFISRPIKGR 247
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 310 SIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQR 345
S++F+L+E G L K L +F DINLT IESRP R
Sbjct: 36 SLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSR 71
>pdb|2YNZ|A Chain A, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
pdb|2YNZ|B Chain B, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
pdb|2YNZ|C Chain C, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
Length = 154
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 207 LPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASA 266
+ ++ E ++V + A+A +++NLG +S DD GA AS G T + +
Sbjct: 25 IKKLIYETNQKVDQNTSAIADINTSITNLGTDALSWDDEEGA--FSASHGTSGTNKITNV 82
Query: 267 QAAEI 271
A EI
Sbjct: 83 AAGEI 87
>pdb|2NRA|C Chain C, Crystal Structure Of Pi Initiator Protein In Complex With
Iteron Dna
Length = 276
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 200 VNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGER- 258
+NH L LP KRV AL + L + +I A+D A A++ S+ R
Sbjct: 21 LNHTLAQLPL----PAKRVMYMALALIDSKEPLERGRVFKIRAEDLAALAKITPSLAYRQ 76
Query: 259 --DTGAVASAQAAEIYGLDILA 278
+ G + A + G DI+A
Sbjct: 77 LKEGGKLLGASKISLRGDDIIA 98
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 202 HCLLGLPGVLKEELKRVF-------SHPQALAQCEMTLSNLGIVRISADDTAGAAQMVAS 254
+C +G P L ++ F HP L + E+ SAD + A Q++A
Sbjct: 68 YCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIK------TLFSADSISRAKQILAM 121
Query: 255 IGERDTGAVASAQAAEIYGL-DILAEKIQDDD 285
I R TGA + +Q I+GL D +A I D
Sbjct: 122 IPGRATGAYSHSQG--IHGLRDAIASGIASRD 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,541,874
Number of Sequences: 62578
Number of extensions: 423200
Number of successful extensions: 933
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 12
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)