Query 018090
Match_columns 361
No_of_seqs 213 out of 1130
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 1.9E-79 6.7E-84 589.9 29.1 230 119-352 6-244 (283)
2 2qmw_A PDT, prephenate dehydra 100.0 1.4E-78 4.7E-83 579.8 26.0 226 119-352 3-233 (267)
3 3mwb_A Prephenate dehydratase; 100.0 1.4E-78 4.9E-83 590.9 26.1 234 119-352 6-246 (313)
4 3luy_A Probable chorismate mut 100.0 2E-75 7E-80 572.1 22.1 230 118-352 5-252 (329)
5 1phz_A Protein (phenylalanine 99.3 1.4E-12 4.7E-17 131.4 6.6 50 303-352 29-78 (429)
6 2ko1_A CTR148A, GTP pyrophosph 95.6 0.013 4.5E-07 44.4 4.8 40 307-346 4-43 (88)
7 1wdn_A GLNBP, glutamine bindin 95.3 0.48 1.6E-05 39.8 14.0 94 119-234 109-206 (226)
8 3h7m_A Sensor protein; histidi 94.4 0.6 2.1E-05 39.5 12.3 94 119-234 117-214 (234)
9 3mpk_A Virulence sensor protei 94.2 0.39 1.3E-05 42.7 11.1 95 119-235 139-238 (267)
10 1xt8_A Putative amino-acid tra 94.2 0.72 2.5E-05 41.4 13.0 94 119-234 153-249 (292)
11 3k4u_A Binding component of AB 94.2 0.3 1E-05 42.4 10.0 94 119-234 115-212 (245)
12 1zpv_A ACT domain protein; str 94.2 0.067 2.3E-06 41.0 5.2 38 308-345 5-42 (91)
13 3kzg_A Arginine 3RD transport 94.1 0.46 1.6E-05 40.9 11.1 93 120-234 111-214 (237)
14 4f3p_A Glutamine-binding perip 93.9 0.47 1.6E-05 41.3 10.7 80 119-209 130-213 (249)
15 2f1f_A Acetolactate synthase i 93.7 0.071 2.4E-06 47.1 5.1 39 308-346 3-41 (164)
16 2pc6_A Probable acetolactate s 93.2 0.08 2.7E-06 46.9 4.5 39 308-346 4-42 (165)
17 3del_B Arginine binding protei 92.9 1.3 4.4E-05 38.0 11.8 93 119-234 118-216 (242)
18 2fgc_A Acetolactate synthase, 92.4 0.13 4.6E-06 46.7 4.9 39 308-346 29-67 (193)
19 2f06_A Conserved hypothetical 92.0 0.14 5E-06 42.7 4.5 37 308-344 6-42 (144)
20 2yjp_A Putative ABC transporte 91.9 0.94 3.2E-05 40.9 10.1 49 119-169 164-212 (291)
21 3qax_A Probable ABC transporte 91.9 2 6.9E-05 37.1 11.9 93 119-234 139-237 (268)
22 4dz1_A DALS D-alanine transpor 91.4 0.98 3.4E-05 39.8 9.5 80 119-209 137-225 (259)
23 2qpq_A Protein BUG27; alpha/be 90.6 1.9 6.3E-05 40.7 11.1 130 116-255 127-285 (301)
24 3i6v_A Periplasmic His/Glu/Gln 90.6 3.1 0.00011 35.8 11.8 90 121-234 108-201 (232)
25 2pfz_A Putative exported prote 90.3 9.1 0.00031 35.5 15.4 170 119-296 2-214 (301)
26 2vha_A Periplasmic binding tra 90.1 2.4 8.1E-05 37.7 10.8 93 120-234 131-232 (287)
27 2f5x_A BUGD; periplasmic bindi 89.6 1.2 4.2E-05 42.4 9.0 129 118-255 138-296 (312)
28 3tql_A Arginine-binding protei 89.6 1.8 6.3E-05 36.2 9.2 50 118-169 108-158 (227)
29 2f06_A Conserved hypothetical 89.6 0.33 1.1E-05 40.5 4.4 35 309-343 72-107 (144)
30 4i62_A Amino acid ABC transpor 89.4 0.77 2.6E-05 39.9 6.8 49 119-169 150-198 (269)
31 2y7i_A STM4351; arginine-bindi 89.0 0.91 3.1E-05 38.4 6.9 49 119-169 112-160 (229)
32 3un6_A Hypothetical protein sa 88.7 15 0.0005 34.0 15.6 137 117-265 51-209 (341)
33 2pfy_A Putative exported prote 88.6 13 0.00044 34.3 15.1 170 119-296 3-215 (301)
34 3kbr_A Cyclohexadienyl dehydra 88.5 0.72 2.5E-05 39.5 5.9 49 119-169 125-173 (239)
35 2pyy_A Ionotropic glutamate re 88.3 4.1 0.00014 34.0 10.5 78 119-209 112-193 (228)
36 4h5g_A Amino acid ABC superfam 88.2 1.1 3.7E-05 39.2 7.1 48 120-169 124-171 (243)
37 1u8s_A Glycine cleavage system 86.7 1.3 4.6E-05 38.6 6.7 36 307-342 92-127 (192)
38 3hv1_A Polar amino acid ABC up 86.4 1.1 3.8E-05 39.3 6.1 94 119-234 127-232 (268)
39 1ii5_A SLR1257 protein; membra 86.4 1.7 5.7E-05 36.7 6.9 78 119-209 116-197 (233)
40 2yln_A Putative ABC transporte 86.3 3.8 0.00013 36.7 9.7 92 119-234 164-261 (283)
41 2dvz_A BUGE, putative exported 86.2 4.2 0.00014 38.7 10.3 128 117-254 141-297 (314)
42 2hpg_A ABC transporter, peripl 85.7 7.2 0.00025 36.9 11.7 161 116-282 7-220 (327)
43 3ksx_A Nitrate transport prote 85.5 21 0.00073 32.5 16.2 133 115-255 26-177 (324)
44 1lst_A Lysine, arginine, ornit 85.4 2.1 7.1E-05 36.5 7.1 48 120-169 112-161 (239)
45 2vpn_A Periplasmic substrate b 84.7 25 0.00086 32.6 16.2 172 119-296 2-217 (316)
46 2v25_A Major cell-binding fact 84.1 2.2 7.4E-05 36.6 6.7 49 119-169 148-200 (259)
47 2pvu_A ARTJ; basic amino acid 83.0 2.4 8.1E-05 37.4 6.6 48 120-169 148-196 (272)
48 2q88_A EHUB, putative ABC tran 81.8 2.6 8.8E-05 36.5 6.3 48 120-169 125-173 (257)
49 2nwr_A 2-dehydro-3-deoxyphosph 81.6 0.11 3.6E-06 49.3 -3.0 44 59-102 219-265 (267)
50 2nyi_A Unknown protein; protei 79.9 1.8 6.1E-05 38.2 4.6 36 307-342 92-127 (195)
51 4eq9_A ABC transporter substra 79.4 17 0.00058 30.6 10.6 94 119-234 115-219 (246)
52 2x26_A Periplasmic aliphatic s 77.8 38 0.0013 30.2 13.2 150 118-278 3-176 (308)
53 4ab5_A Transcriptional regulat 76.8 20 0.00069 29.4 10.1 138 116-271 6-163 (222)
54 3uif_A Sulfonate ABC transport 76.1 48 0.0017 30.5 15.6 116 143-268 46-176 (348)
55 1ii5_A SLR1257 protein; membra 76.0 31 0.0011 28.6 11.2 117 142-271 45-168 (233)
56 1xs5_A 29 kDa protein, membran 76.0 46 0.0016 30.2 15.8 109 119-236 4-124 (241)
57 2zzv_A ABC transporter, solute 75.0 31 0.0011 32.6 12.2 142 117-265 33-218 (361)
58 3tmg_A Glycine betaine, L-prol 71.8 61 0.0021 29.7 15.7 154 117-279 15-198 (280)
59 2re1_A Aspartokinase, alpha an 71.4 3.9 0.00013 35.1 4.3 34 308-341 25-59 (167)
60 3mpk_A Virulence sensor protei 70.4 39 0.0013 29.5 10.9 114 142-271 72-193 (267)
61 2xwv_A Sialic acid-binding per 70.4 69 0.0024 29.8 17.1 172 119-296 4-220 (312)
62 3n5l_A Binding protein compone 70.1 22 0.00076 32.9 9.6 83 119-210 116-213 (310)
63 2ozz_A Hypothetical protein YH 69.8 57 0.002 29.8 12.1 111 143-264 46-161 (231)
64 3del_B Arginine binding protei 69.4 22 0.00076 30.0 8.8 114 142-272 51-172 (242)
65 4go7_X Aspartokinase; transfer 68.3 5.4 0.00018 36.0 4.7 34 308-341 35-69 (200)
66 2dtj_A Aspartokinase; protein- 67.2 6 0.00021 34.3 4.7 33 308-340 15-48 (178)
67 1wdn_A GLNBP, glutamine bindin 66.2 49 0.0017 27.1 10.1 114 142-271 42-163 (226)
68 3tml_A 2-dehydro-3-deoxyphosph 65.8 0.72 2.4E-05 44.2 -1.7 34 60-93 240-273 (288)
69 3ix1_A N-formyl-4-amino-5-amin 65.7 53 0.0018 29.3 11.0 103 143-255 36-151 (302)
70 3p7i_A PHND, subunit of alkylp 65.7 6.4 0.00022 37.1 4.9 83 119-210 126-222 (321)
71 3fs2_A 2-dehydro-3-deoxyphosph 65.7 0.73 2.5E-05 44.4 -1.7 34 60-93 258-291 (298)
72 2iee_A ORF2, probable ABC tran 65.0 16 0.00055 32.1 7.2 46 119-169 132-179 (271)
73 3i6v_A Periplasmic His/Glu/Gln 64.6 30 0.001 29.4 8.7 113 142-271 45-158 (232)
74 3qsl_A Putative exported prote 63.6 82 0.0028 28.1 13.9 138 118-265 33-194 (346)
75 3sz8_A 2-dehydro-3-deoxyphosph 63.3 0.72 2.5E-05 44.1 -2.2 34 60-93 239-272 (285)
76 2hzl_A Trap-T family sorbitol/ 62.8 84 0.0029 29.6 12.2 121 118-242 32-196 (365)
77 3kzg_A Arginine 3RD transport 62.6 13 0.00044 31.6 5.9 116 142-272 44-165 (237)
78 3ho7_A OXYR; beta-alpha-barrel 62.2 57 0.0019 26.8 9.8 137 116-270 9-167 (232)
79 1zco_A 2-dehydro-3-deoxyphosph 61.2 0.78 2.7E-05 43.0 -2.4 38 56-93 221-258 (262)
80 3qsl_A Putative exported prote 61.0 11 0.00038 34.0 5.5 49 120-169 139-194 (346)
81 1vs1_A 3-deoxy-7-phosphoheptul 60.4 0.89 3.1E-05 43.1 -2.1 33 60-92 240-272 (276)
82 1sw5_A Osmoprotection protein 59.4 32 0.0011 31.1 8.4 161 118-280 6-207 (275)
83 4gvo_A LMO2349 protein; struct 59.1 40 0.0014 29.0 8.6 80 119-209 118-205 (243)
84 2x7q_A Ca3427, possible thiami 58.6 1.1E+02 0.0037 27.8 12.8 131 117-255 14-165 (321)
85 1vr6_A Phospho-2-dehydro-3-deo 58.4 1.2 4.2E-05 43.6 -1.6 34 60-93 308-341 (350)
86 1zbm_A Hypothetical protein AF 58.4 15 0.00053 32.6 5.9 50 119-170 103-152 (280)
87 2pyy_A Ionotropic glutamate re 58.3 75 0.0026 26.0 13.7 114 142-271 41-164 (228)
88 2qkf_A 3-deoxy-D-manno-octulos 57.6 1.1 3.9E-05 42.4 -1.9 35 59-93 233-267 (280)
89 4ddd_A Immunogenic protein; ss 56.7 17 0.0006 34.0 6.2 50 120-170 147-203 (327)
90 3s1t_A Aspartokinase; ACT doma 56.6 8 0.00027 33.9 3.5 27 314-340 23-49 (181)
91 1p99_A Hypothetical protein PG 56.4 37 0.0013 31.8 8.3 88 118-215 39-134 (295)
92 4dz1_A DALS D-alanine transpor 56.4 97 0.0033 26.6 12.0 116 142-271 69-197 (259)
93 3p7i_A PHND, subunit of alkylp 56.1 1.3E+02 0.0044 28.0 12.8 146 114-269 10-188 (321)
94 2dt9_A Aspartokinase; protein- 55.9 6.7 0.00023 33.5 2.9 34 308-341 16-50 (167)
95 1o60_A 2-dehydro-3-deoxyphosph 55.6 1.2 4.2E-05 42.5 -2.1 35 59-93 236-270 (292)
96 4ddd_A Immunogenic protein; ss 55.3 1.2E+02 0.0042 28.1 11.8 134 117-256 31-195 (327)
97 4i62_A Amino acid ABC transpor 54.7 37 0.0012 29.0 7.5 114 142-271 82-204 (269)
98 1r9l_A Glycine betaine-binding 54.6 1.3E+02 0.0046 27.7 14.2 205 116-330 6-259 (309)
99 3tql_A Arginine-binding protei 54.1 84 0.0029 25.7 9.5 114 142-271 42-164 (227)
100 4f3p_A Glutamine-binding perip 54.0 50 0.0017 28.1 8.3 114 142-271 63-184 (249)
101 3hn0_A Nitrate transport prote 53.8 11 0.00039 34.4 4.2 49 120-169 97-150 (283)
102 2rc8_A Glutamate [NMDA] recept 53.4 18 0.00061 32.6 5.4 80 119-209 170-259 (294)
103 3qax_A Probable ABC transporte 52.8 1E+02 0.0036 26.0 10.9 114 142-272 71-193 (268)
104 1ygy_A PGDH, D-3-phosphoglycer 52.2 12 0.00042 38.0 4.5 39 308-346 454-493 (529)
105 3fxb_A Trap dicarboxylate tran 51.4 1.6E+02 0.0053 27.5 15.4 177 106-289 3-223 (326)
106 2pvu_A ARTJ; basic amino acid 51.3 76 0.0026 27.5 9.1 114 142-271 81-202 (272)
107 2v25_A Major cell-binding fact 50.8 1.1E+02 0.0037 25.6 10.0 116 142-271 82-206 (259)
108 3lou_A Formyltetrahydrofolate 50.4 19 0.00066 34.1 5.3 36 307-342 9-44 (292)
109 2yln_A Putative ABC transporte 50.1 70 0.0024 28.3 8.8 115 142-271 97-216 (283)
110 3n0v_A Formyltetrahydrofolate 49.5 19 0.00066 33.9 5.2 35 308-342 8-42 (286)
111 3k4u_A Binding component of AB 48.4 35 0.0012 28.9 6.3 176 142-352 45-235 (245)
112 3uif_A Sulfonate ABC transport 48.2 18 0.00061 33.5 4.7 48 119-169 119-173 (348)
113 3o1l_A Formyltetrahydrofolate 46.7 24 0.00083 33.6 5.4 37 307-343 21-57 (302)
114 2dt9_A Aspartokinase; protein- 46.0 9.9 0.00034 32.4 2.3 34 308-341 97-131 (167)
115 3mtj_A Homoserine dehydrogenas 45.9 15 0.00051 36.9 4.0 37 308-344 357-395 (444)
116 3k5p_A D-3-phosphoglycerate de 45.0 37 0.0012 33.8 6.6 39 307-345 342-380 (416)
117 3nvt_A 3-deoxy-D-arabino-heptu 44.2 2.7 9.1E-05 41.7 -1.8 34 60-93 344-377 (385)
118 2y7i_A STM4351; arginine-bindi 44.0 43 0.0015 27.7 6.0 114 142-271 46-166 (229)
119 3fxq_A LYSR type regulator of 43.8 1.3E+02 0.0046 26.3 9.7 116 139-270 117-248 (305)
120 3ksx_A Nitrate transport prote 43.1 40 0.0014 30.6 6.2 48 119-169 131-185 (324)
121 3onm_A Transcriptional regulat 43.0 1.5E+02 0.005 24.8 14.6 135 116-270 25-172 (238)
122 3kbr_A Cyclohexadienyl dehydra 42.9 14 0.00048 31.2 2.8 115 142-272 55-180 (239)
123 3nrb_A Formyltetrahydrofolate 42.8 26 0.00089 33.0 4.9 36 307-342 6-41 (287)
124 2czl_A Hypothetical protein TT 42.4 39 0.0013 29.8 5.8 50 118-169 95-144 (272)
125 3h7m_A Sensor protein; histidi 42.1 1.4E+02 0.0049 24.4 11.6 112 142-270 51-170 (234)
126 2re1_A Aspartokinase, alpha an 41.7 17 0.00057 31.0 3.1 26 315-340 113-138 (167)
127 2y7p_A LYSR-type regulatory pr 40.8 50 0.0017 27.7 6.0 144 116-270 6-162 (218)
128 3k2d_A ABC-type metal ION tran 39.9 1.7E+02 0.0058 26.9 9.8 112 116-236 4-128 (237)
129 4ef1_A Pheromone COB1/lipoprot 39.8 2.3E+02 0.0078 26.1 14.2 148 118-279 4-190 (246)
130 2ql3_A Probable transcriptiona 39.6 1.5E+02 0.0051 23.9 11.3 139 118-266 5-156 (209)
131 1ixc_A CBNR, LYSR-type regulat 39.2 1.9E+02 0.0063 24.9 15.5 141 116-269 89-247 (294)
132 2q88_A EHUB, putative ABC tran 37.8 39 0.0013 28.8 4.9 113 143-271 54-179 (257)
133 1us5_A Putative GLUR0 ligand b 37.7 2.1E+02 0.0073 25.2 12.6 137 117-265 18-187 (314)
134 4eq9_A ABC transporter substra 37.6 90 0.0031 26.0 7.2 115 143-271 49-175 (246)
135 3cg4_A Response regulator rece 37.4 1.3E+02 0.0046 22.8 7.9 111 218-330 13-125 (142)
136 2wqp_A Polysialic acid capsule 37.4 3.4 0.00012 40.5 -2.3 32 62-93 234-267 (349)
137 3gxa_A Outer membrane lipoprot 37.4 1E+02 0.0035 29.1 8.0 109 117-236 22-145 (275)
138 3mah_A Aspartokinase; aspartat 37.2 13 0.00046 31.3 1.8 28 316-343 29-56 (157)
139 4esw_A Pyrimidine biosynthesis 36.5 1.6E+02 0.0054 27.0 9.2 86 143-236 40-133 (342)
140 3tqw_A Methionine-binding prot 36.3 2.6E+02 0.0088 25.7 12.1 108 118-236 3-125 (240)
141 3hv1_A Polar amino acid ABC up 36.3 19 0.00065 31.2 2.7 113 143-271 62-188 (268)
142 4ib2_A Putative lipoprotein; p 36.2 1.1E+02 0.0038 28.4 8.0 109 119-236 12-132 (252)
143 2yjp_A Putative ABC transporte 35.9 89 0.003 27.6 7.2 114 142-271 98-218 (291)
144 1pb7_A N-methyl-D-aspartate re 35.5 22 0.00074 32.1 3.0 74 127-209 176-257 (292)
145 3ab4_A Aspartokinase; aspartat 34.9 35 0.0012 33.5 4.6 34 307-340 263-297 (421)
146 3p96_A Phosphoserine phosphata 34.8 31 0.0011 33.1 4.2 38 308-345 12-49 (415)
147 2x26_A Periplasmic aliphatic s 34.8 53 0.0018 29.3 5.5 47 120-169 106-159 (308)
148 2dtj_A Aspartokinase; protein- 34.3 22 0.00075 30.7 2.7 28 315-342 105-132 (178)
149 1sc6_A PGDH, D-3-phosphoglycer 33.8 34 0.0012 33.6 4.3 35 308-342 331-365 (404)
150 3n5l_A Binding protein compone 33.0 1.8E+02 0.006 26.7 8.9 143 118-270 4-180 (310)
151 1ve4_A ATP phosphoribosyltrans 32.6 2.8E+02 0.0095 25.0 10.6 140 118-278 4-170 (206)
152 2rin_A Putative glycine betain 32.2 2.9E+02 0.01 25.2 14.9 157 117-279 6-194 (298)
153 3lte_A Response regulator; str 32.1 55 0.0019 24.8 4.5 78 218-297 12-89 (132)
154 1xt8_A Putative amino-acid tra 30.6 2.5E+02 0.0086 24.4 9.2 114 142-271 87-207 (292)
155 3u65_B TP33 protein; tetratric 30.5 3.4E+02 0.012 25.3 13.1 176 116-296 8-233 (328)
156 1vli_A Spore coat polysacchari 29.2 4.6 0.00016 40.1 -2.8 32 61-92 245-278 (385)
157 3i42_A Response regulator rece 29.2 43 0.0015 25.3 3.4 109 218-330 9-120 (127)
158 2h9b_A HTH-type transcriptiona 29.0 3E+02 0.01 24.2 12.8 139 119-270 91-249 (312)
159 3fzv_A Probable transcriptiona 28.8 98 0.0034 26.9 6.1 142 116-267 93-247 (306)
160 3kht_A Response regulator; PSI 28.2 76 0.0026 24.5 4.8 109 218-331 11-127 (144)
161 3oxn_A Putative transcriptiona 28.1 2.5E+02 0.0087 23.1 8.8 144 116-277 17-183 (241)
162 3l76_A Aspartokinase; alloster 27.9 52 0.0018 34.1 4.6 36 307-342 443-479 (600)
163 3grc_A Sensor protein, kinase; 27.5 47 0.0016 25.5 3.3 110 218-331 12-126 (140)
164 2b4a_A BH3024; flavodoxin-like 27.4 1.7E+02 0.0058 22.2 6.7 106 217-328 20-127 (138)
165 3gl9_A Response regulator; bet 27.0 53 0.0018 24.9 3.6 76 219-297 9-85 (122)
166 1z7m_E ATP phosphoribosyltrans 26.8 3E+02 0.01 24.7 9.0 140 120-278 2-172 (208)
167 3eod_A Protein HNR; response r 26.3 93 0.0032 23.4 4.9 110 217-330 12-124 (130)
168 3s1t_A Aspartokinase; ACT doma 25.9 57 0.0019 28.3 3.9 33 308-340 98-131 (181)
169 3jv9_A OXYR, transcriptional r 25.6 2.5E+02 0.0087 22.3 15.5 137 117-271 3-165 (219)
170 2ozz_A Hypothetical protein YH 25.3 1.2E+02 0.0041 27.7 6.1 47 120-168 113-161 (231)
171 2vha_A Periplasmic binding tra 24.7 3.3E+02 0.011 23.4 10.4 115 143-271 65-188 (287)
172 2x7q_A Ca3427, possible thiami 24.6 3.8E+02 0.013 24.0 9.8 46 120-166 119-174 (321)
173 2b4l_A Glycine betaine-binding 24.2 2.7E+02 0.0093 25.3 8.5 89 116-210 163-257 (268)
174 2j48_A Two-component sensor ki 23.8 54 0.0018 23.7 2.9 78 218-298 7-85 (119)
175 3hn0_A Nitrate transport prote 23.6 3.9E+02 0.013 23.8 16.7 112 143-267 35-153 (283)
176 1atg_A MODA, periplasmic molyb 23.6 1.1E+02 0.0038 25.0 5.2 50 121-170 106-165 (231)
177 2a5s_A N-methyl-D-aspartate re 23.0 38 0.0013 30.2 2.3 48 120-169 162-213 (284)
178 3cnb_A DNA-binding response re 22.9 1E+02 0.0035 23.4 4.6 112 218-332 14-130 (143)
179 3gzg_A Molybdate-binding perip 22.8 1.1E+02 0.0039 27.3 5.5 49 120-169 133-190 (253)
180 3r26_A Molybdate-binding perip 22.5 92 0.0031 27.2 4.7 49 120-169 117-174 (237)
181 3l6g_A Betaine ABC transporter 22.2 4.2E+02 0.014 23.6 14.6 132 143-279 32-181 (256)
182 1o63_A ATP phosphoribosyltrans 21.9 2.3E+02 0.0079 25.8 7.3 142 119-278 2-165 (219)
183 3hdv_A Response regulator; PSI 21.2 1.1E+02 0.0036 23.3 4.3 113 217-331 12-126 (136)
184 3tvi_A Aspartokinase; structur 20.7 1.1E+02 0.0036 30.6 5.1 74 268-341 253-334 (446)
185 2vd2_A ATP phosphoribosyltrans 20.2 2.7E+02 0.0092 25.2 7.3 143 117-278 3-174 (214)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=1.9e-79 Score=589.91 Aligned_cols=230 Identities=50% Similarity=0.751 Sum_probs=219.8
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL 198 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l 198 (361)
+++||||||+|||||+||+++| +++||+||++||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 4689999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhc-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCcee
Q 018090 199 VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNL-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL 277 (361)
Q Consensus 199 pI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iL 277 (361)
||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++|+++++++.|||||+.||++|||+||
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il 162 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL 162 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence 9999999999999999999999999999999999998 799999999999999999987788999999999999999999
Q ss_pred eccccCCCCCceEEEEEeeCCCC--------CCCCCCceEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCCCCC
Q 018090 278 AEKIQDDDDNVTRFLILAREPII--------AGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPL 349 (361)
Q Consensus 278 a~~IqD~~~N~TRFlvl~r~~~~--------~~~~~~~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~~pw 349 (361)
+++|||+++|+|||+||++++.. +. .+.+||||+|+++|+||+|+++|++|+++|||||||||||+++++|
T Consensus 163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~ 241 (283)
T 2qmx_A 163 KENLADEEWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAF 241 (283)
T ss_dssp ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTT
T ss_pred cccCcCCCCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCc
Confidence 99999999999999999998643 21 2258999999999999999999999999999999999999999999
Q ss_pred eee
Q 018090 350 RVV 352 (361)
Q Consensus 350 ~y~ 352 (361)
+|+
T Consensus 242 ~Y~ 244 (283)
T 2qmx_A 242 EYL 244 (283)
T ss_dssp EEE
T ss_pred ceE
Confidence 984
No 2
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=1.4e-78 Score=579.80 Aligned_cols=226 Identities=29% Similarity=0.392 Sum_probs=216.2
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCc--eeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCE--TVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEV 196 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e--~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi 196 (361)
+++||||||+|||||+||+++|++.+ ++||+||++||++|++|++||||||||||++|+|.+|||+|.+++++|+||+
T Consensus 3 ~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~ 82 (267)
T 2qmw_A 3 AMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEI 82 (267)
T ss_dssp -CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEEE
Confidence 57899999999999999999998754 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCce
Q 018090 197 QLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDI 276 (361)
Q Consensus 197 ~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~i 276 (361)
.+||+|||++++|+++++|++||||||||+||++||++.+++.+++.|||+||++|++ + .|||||+.||++|||+|
T Consensus 83 ~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~i 158 (267)
T 2qmw_A 83 RLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFTP 158 (267)
T ss_dssp EEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCCE
T ss_pred EEEeeeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCcE
Confidence 9999999999999999999999999999999999999977999999999999999986 3 99999999999999999
Q ss_pred eeccccCCCCCceEEEEEeeCCCCCCCCCCceEEEEEEe---cCCcchHHHHHHHHHHCCccccceeeecCCCCCCeee
Q 018090 277 LAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTL---EEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVV 352 (361)
Q Consensus 277 La~~IqD~~~N~TRFlvl~r~~~~~~~~~~~KtSi~f~~---~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~~pw~y~ 352 (361)
|+++|||+++|+|||+||++++ .+ + .+||||+|++ +|+||+|+++|++|+++|||||||||||+++++|+|+
T Consensus 159 l~~~I~D~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~ 233 (267)
T 2qmw_A 159 IDTHIEDYPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYR 233 (267)
T ss_dssp EEECCCSCSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEE
T ss_pred eeccccCCCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEE
Confidence 9999999999999999999987 33 3 6899999999 7999999999999999999999999999999999984
No 3
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=1.4e-78 Score=590.95 Aligned_cols=234 Identities=29% Similarity=0.448 Sum_probs=220.9
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCC--CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcC-CeEEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYP--KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH-RLHIVGE 195 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~--~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~-~L~IvgE 195 (361)
+++||||||+|||||+||+++|+ +.+++||.||++||++|++|++||||||||||++|+|.+|||+|.++ +|+|+||
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~IvgE 85 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIRE 85 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEEE
Confidence 57899999999999999999884 57899999999999999999999999999999999999999999985 7999999
Q ss_pred EEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcC
Q 018090 196 VQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYG 273 (361)
Q Consensus 196 i~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~Yg 273 (361)
+.+||+|||++++|.++++|++||||||||+||++||+++ +++++++.|||+||++|+++++++.|||||+.||++||
T Consensus 86 ~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Yg 165 (313)
T 3mwb_A 86 ALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQP 165 (313)
T ss_dssp EEEECCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHCT
T ss_pred EEEeeeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHcC
Confidence 9999999999999999999999999999999999999986 59999999999999999987766899999999999999
Q ss_pred -CceeeccccCCCCCceEEEEEeeCCCCCCCCCCceEEEEEEec-CCcchHHHHHHHHHHCCccccceeeecCCCCCCee
Q 018090 274 -LDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLE-EGPGMLFKALAVFALRDINLTKIESRPQRKRPLRV 351 (361)
Q Consensus 274 -L~iLa~~IqD~~~N~TRFlvl~r~~~~~~~~~~~KtSi~f~~~-~~PGaL~~iL~~Fa~~~INLtkIESRP~~~~pw~y 351 (361)
|+||+++|||+++|+|||+||++++..+..++.+||||+|+++ |+||+|+++|++|+++|||||||||||+++++|+|
T Consensus 166 ~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y 245 (313)
T 3mwb_A 166 GLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHY 245 (313)
T ss_dssp TCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSE
T ss_pred ChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccE
Confidence 9999999999999999999999986544445678999999997 99999999999999999999999999999999998
Q ss_pred e
Q 018090 352 V 352 (361)
Q Consensus 352 ~ 352 (361)
+
T Consensus 246 ~ 246 (313)
T 3mwb_A 246 F 246 (313)
T ss_dssp E
T ss_pred E
Confidence 4
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=2e-75 Score=572.11 Aligned_cols=230 Identities=24% Similarity=0.310 Sum_probs=212.6
Q ss_pred CccEEEEeCCCCcHHHHHHHHHC--------CCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcC-
Q 018090 118 TKVRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH- 188 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA~~~f--------~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~- 188 (361)
.++|||||||+|||||+||+++| ++.+++||.||++||++|++|+ ||||||||||++|+|.+|||+|.++
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~~ 83 (329)
T 3luy_A 5 SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDAK 83 (329)
T ss_dssp CCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTCS
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhccC
Confidence 46799999999999999999975 3578999999999999999999 9999999999999999999999885
Q ss_pred CeEEEEEEEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhh
Q 018090 189 RLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQA 268 (361)
Q Consensus 189 ~L~IvgEi~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~A 268 (361)
+|+|+||+.+||+|||++++|.++++|++|||||||++||++||++++++.+++.|||+||++++. +.|||||+.|
T Consensus 84 ~l~I~gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~~----~~AAIas~~A 159 (329)
T 3luy_A 84 DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLIP----GEIAFGPAIC 159 (329)
T ss_dssp SCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCCT----TEEEEECTTH
T ss_pred CcEEEEEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhCC----CCceeCCHHH
Confidence 799999999999999999999999999999999999999999999999999999999999998753 5899999999
Q ss_pred HHHcCCceeeccccCCCCCceEEEEEeeCCCC------CC-CCCCceEEEEEEec--CCcchHHHHHHHHHHCCccccce
Q 018090 269 AEIYGLDILAEKIQDDDDNVTRFLILAREPII------AG-TDRPYKTSIVFTLE--EGPGMLFKALAVFALRDINLTKI 339 (361)
Q Consensus 269 A~~YgL~iLa~~IqD~~~N~TRFlvl~r~~~~------~~-~~~~~KtSi~f~~~--~~PGaL~~iL~~Fa~~~INLtkI 339 (361)
|++|||+||+++|||+++|+|||+||++++.. +. ..+.+|||++|.++ |+||+|+++|++|+++|||||||
T Consensus 160 AelYgL~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkI 239 (329)
T 3luy_A 160 GELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSF 239 (329)
T ss_dssp HHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred HHHcCCccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEE
Confidence 99999999999999999999999999997542 11 12347889888876 68999999999999999999999
Q ss_pred eeecCCCCCCeee
Q 018090 340 ESRPQRKRPLRVV 352 (361)
Q Consensus 340 ESRP~~~~pw~y~ 352 (361)
||||+++++|+|+
T Consensus 240 ESRP~~~~~~~Y~ 252 (329)
T 3luy_A 240 ISRPIKGRTGTYS 252 (329)
T ss_dssp EEEEETTEEEEEE
T ss_pred EeeECCCCCccEE
Confidence 9999999999985
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.31 E-value=1.4e-12 Score=131.35 Aligned_cols=50 Identities=40% Similarity=0.536 Sum_probs=47.0
Q ss_pred CCCCceEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCCCCCeee
Q 018090 303 TDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVV 352 (361)
Q Consensus 303 ~~~~~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~~pw~y~ 352 (361)
.++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++++|+|+
T Consensus 29 ~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~ 78 (429)
T 1phz_A 29 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYE 78 (429)
T ss_dssp CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEE
T ss_pred CCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEE
Confidence 34568999999999999999999999999999999999999999999984
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.65 E-value=0.013 Score=44.45 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=35.7
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCC
Q 018090 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRK 346 (361)
Q Consensus 307 ~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~ 346 (361)
+.+.|.+..+|+||.|.++.+.|++.|+|+..+...+..+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 5677888889999999999999999999999999877654
No 7
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=95.31 E-value=0.48 Score=39.85 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=66.6
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHH-hc---CCeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LR---HRLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~---~~L~Ivg 194 (361)
..+|++. .|+..+....+.+++.+++.+.+..+++++|.+|++|+++..- .++..+ .+ .++.+.+
T Consensus 109 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~---------~~~~~~~~~~~~~~l~~~~ 177 (226)
T 1wdn_A 109 GKVVAVK--SGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDT---------PNILYFIKTAGNGQFKAVG 177 (226)
T ss_dssp TCEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEH---------HHHHHHHHTTTTTTEEEEE
T ss_pred CCEEEEE--cCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCc---------HHHHHHHHhCCCCceEEec
Confidence 3579884 6787777777777788899999999999999999999988762 233322 22 2578887
Q ss_pred EEEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 195 EVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 195 Ei~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
....+...+++.+++ +|+-..+..++|.+
T Consensus 178 ~~~~~~~~~~~~~k~-----------~~~l~~~~~~~l~~ 206 (226)
T 1wdn_A 178 DSLEAQQYGIAFPKG-----------SDELRDKVNGALKT 206 (226)
T ss_dssp EEEEEEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCcccCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 766666677776654 35555566666654
No 8
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=94.39 E-value=0.6 Score=39.54 Aligned_cols=94 Identities=14% Similarity=-0.018 Sum_probs=65.5
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHH-HHhc---CCeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYD-LLLR---HRLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlD-lL~~---~~L~Ivg 194 (361)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..-. +.. ++.+ .++.+.+
T Consensus 117 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~ 185 (234)
T 3h7m_A 117 GRKVALH--RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMV---------PGMYIIRENRLTNLVPVA 185 (234)
T ss_dssp TSCEEEE--TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHTTCTTEEEEE
T ss_pred CCEEEEE--eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccH---------HHHHHHHhcCCCceEEec
Confidence 3478886 57776666666666678999999999999999999999887521 222 2222 3588888
Q ss_pred EEEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 195 EVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 195 Ei~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
....+...+++..++ +|+-..+..+.|.+
T Consensus 186 ~~~~~~~~~~~~~~~-----------~~~l~~~l~~~l~~ 214 (234)
T 3h7m_A 186 RSIAAQRYGYAVRQG-----------DAELLARFSEGLAI 214 (234)
T ss_dssp EEEEEEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred cccCCCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 777777777766653 45555666666654
No 9
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=94.23 E-value=0.39 Score=42.75 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh----cCCeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL----RHRLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~----~~~L~Ivg 194 (361)
..+||+.. |+..+....+.+++.+++.+++.++++++|.+|++|+++..- .++..++ ..++.+.+
T Consensus 139 g~~i~v~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~---------~~~~~~~~~~~~~~l~~~~ 207 (267)
T 3mpk_A 139 GRTVALVR--NSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQ---------ISASYYVNRYFAGKLRIAS 207 (267)
T ss_dssp TCEEEEET--TCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEH---------HHHHHHHHHHCTTTEEEEE
T ss_pred CCEEEEeC--CchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecH---------HHHHHHHHhcCCCceEEEe
Confidence 46899884 666676667778889999999999999999999999999762 2222222 24588887
Q ss_pred EEEE-eeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHhc
Q 018090 195 EVQL-VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNL 235 (361)
Q Consensus 195 Ei~l-pI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~~ 235 (361)
.... +...+++.+++ +|+-..+..+.|.+.
T Consensus 208 ~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 238 (267)
T 3mpk_A 208 ALDLPPAEIALATTRG-----------QTELMSILNKALYSI 238 (267)
T ss_dssp ECSSCCEEEEEEEETT-----------CHHHHHHHHHHHHTS
T ss_pred ccCCCceeEEEEEcCC-----------CHHHHHHHHHHHHhC
Confidence 7653 56666666543 566667777777653
No 10
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=94.21 E-value=0.72 Score=41.44 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=65.6
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHH-Hhc-CCeEEEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL-LLR-HRLHIVGEV 196 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDl-L~~-~~L~IvgEi 196 (361)
..+|++. .|+..+....+.+++.+++.+++.++++++|.+|++|+++..- ..+.. +.+ .++.+.+..
T Consensus 153 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~---------~~~~~~~~~~~~l~~~~~~ 221 (292)
T 1xt8_A 153 DKTLLLN--KGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDN---------TLLFAWVKDHPDFKMGIKE 221 (292)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEH---------HHHHHHHHHCTTEEEEEEE
T ss_pred CCEEEEe--CCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecH---------HHHHHHHHhCCCeEEcccc
Confidence 3579884 6888888777777888899999999999999999999988752 23332 222 247787765
Q ss_pred EEeeee-EeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 197 QLVVNH-CLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 197 ~lpI~h-~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
.-+..+ +++..++ +|+-.....++|.+
T Consensus 222 ~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 249 (292)
T 1xt8_A 222 LGNKDVIAPAVKKG-----------DKELKEFIDNLIIK 249 (292)
T ss_dssp EEEEEEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred cccCceeEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 555555 5555442 45556666666655
No 11
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=94.18 E-value=0.3 Score=42.40 Aligned_cols=94 Identities=14% Similarity=0.042 Sum_probs=66.3
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHH-h---cCCeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-L---RHRLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~---~~~L~Ivg 194 (361)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..- .++..+ . ...+.+.+
T Consensus 115 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~---------~~~~~~~~~~~~~~~~~~~ 183 (245)
T 3k4u_A 115 ELTLVTK--FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDL---------PFNVAFMAQKGQGYLVHLD 183 (245)
T ss_dssp SCEEEEE--TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEH---------HHHHHHHHHTTTTTEEEEC
T ss_pred CcEEEEe--CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcH---------HHHHHHHhcCCccceeecC
Confidence 4689886 6888888888888889999999999999999999999988752 222222 2 23466666
Q ss_pred EEEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 195 EVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 195 Ei~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
+...+...+++..++ +|+-..+..+.|.+
T Consensus 184 ~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 212 (245)
T 3k4u_A 184 TSLTYEPLGWAIKKG-----------DPDFLNWLNHFLAQ 212 (245)
T ss_dssp CCCSCEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCcccccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 555555666665543 45556666666654
No 12
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=94.17 E-value=0.067 Score=41.03 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=33.4
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCC
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQR 345 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~ 345 (361)
+..|.+..+|+||.|.++.+.|+++|+|+..+......
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 56677888999999999999999999999999876554
No 13
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=94.13 E-value=0.46 Score=40.91 Aligned_cols=93 Identities=6% Similarity=0.110 Sum_probs=64.5
Q ss_pred cEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-c---------CC
Q 018090 120 VRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-R---------HR 189 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~---------~~ 189 (361)
.+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..- .++..+. + .+
T Consensus 111 ~~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~---------~~~~~~~~~~~~~~~~l~~~ 179 (237)
T 3kzg_A 111 KKIGVR--KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDY---------EAAKYWMASEPYAYKLIGKK 179 (237)
T ss_dssp CEEEEE--TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEH---------HHHHHHHTTSSTTHHHHCCS
T ss_pred CEEEEe--cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCc---------HHHHHHHHhCCccccccCCc
Confidence 678886 4666555556667778999999999999999999999988762 2333222 2 26
Q ss_pred eEEEEEEE-EeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 190 LHIVGEVQ-LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 190 L~IvgEi~-lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
+.+.+... .+...+++.+++ +|+-..+-.++|.+
T Consensus 180 l~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 180 YKLIGKKISIGEGYSIMANPD-----------QFVLIKKINKILLE 214 (237)
T ss_dssp EEEEEEEEECTTCBCCEECGG-----------GHHHHHHHHHHHHH
T ss_pred eEEecCccccCccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 88887754 555556655542 46666777777765
No 14
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=93.85 E-value=0.47 Score=41.32 Aligned_cols=80 Identities=16% Similarity=0.070 Sum_probs=61.5
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-c---CCeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-R---HRLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~---~~L~Ivg 194 (361)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..-. ++..+. + .++.+.+
T Consensus 130 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~l~~~~ 198 (249)
T 4f3p_A 130 GKVIAAK--TGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTP---------NVLFFVNNEGKGRVKVAG 198 (249)
T ss_dssp TSEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHTTTTTTEEEEE
T ss_pred CCEEEEe--CCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcH---------HHHHHHHhCCCCceEEec
Confidence 3589875 68877777777788889999999999999999999999987622 333222 2 3588888
Q ss_pred EEEEeeeeEeeeCCC
Q 018090 195 EVQLVVNHCLLGLPG 209 (361)
Q Consensus 195 Ei~lpI~h~Lla~~g 209 (361)
+...+...+++..++
T Consensus 199 ~~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 199 APVSGDKYGIGFPKG 213 (249)
T ss_dssp EEEEEEEEEEEEETT
T ss_pred CCCCCccEEEEEcCC
Confidence 888778788877665
No 15
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=93.70 E-value=0.071 Score=47.06 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=34.8
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCC
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRK 346 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~ 346 (361)
+-.|.+.+.|+||.|.++.+.|+++|+|+.++...|...
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d 41 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDD 41 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSC
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCC
Confidence 345677788999999999999999999999999999874
No 16
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=93.17 E-value=0.08 Score=46.86 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=35.1
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCC
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRK 346 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~ 346 (361)
|-.|.+.+.|+||.|.++.+.|+++|+|+.++...|+..
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d 42 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTED 42 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCC
Confidence 456777888999999999999999999999999998874
No 17
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=92.91 E-value=1.3 Score=37.99 Aligned_cols=93 Identities=17% Similarity=0.048 Sum_probs=63.4
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-cC-CeEEEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RH-RLHIVGEV 196 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~-~L~IvgEi 196 (361)
..+||+. .|+..+....+ +++.+++.+++.++++++|.+|++|+++.. ..++..++ +. .+.+.+..
T Consensus 118 g~~i~v~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~---------~~~~~~~~~~~~~~~~~~~~ 185 (242)
T 3del_B 118 YRSVAVQ--TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLE---------PSIAQVVLKDFPALSTATID 185 (242)
T ss_dssp SSCEEEE--TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEEC---------HHHHHHHGGGCTTEEEEEEE
T ss_pred CCEEEEE--cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEec---------HHHHHHHHHhCCCeEEecCc
Confidence 3578875 58888777766 778899999999999999999999998875 22333333 33 37777654
Q ss_pred EEeee----eEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 197 QLVVN----HCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 197 ~lpI~----h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
..... .+++.+++ +|+-..+..++|.+
T Consensus 186 ~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 216 (242)
T 3del_B 186 LPEDQWVLGYGIGVASD-----------RPALALKIEAAVQE 216 (242)
T ss_dssp CCGGGCEEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred cCcccccceEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 43333 55555543 45566666666655
No 18
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=92.40 E-value=0.13 Score=46.66 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=34.7
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCCC
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRK 346 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~~ 346 (361)
|-.|.+.++|+||.|.++.+.|+.+|+|+.+|-.-|+..
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted 67 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESET 67 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSS
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCC
Confidence 456777889999999999999999999999998888765
No 19
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.04 E-value=0.14 Score=42.71 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=30.7
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeeecC
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQ 344 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~ 344 (361)
+-.|.+.++|+||.|.++.+.|+++|||+..|.--+.
T Consensus 6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 3456668899999999999999999999999854333
No 20
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=91.89 E-value=0.94 Score=40.92 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=42.6
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
..+||+ +.|+..+....+.+++.+++.+.+..+++++|.+|++|+++++
T Consensus 164 gk~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 212 (291)
T 2yjp_A 164 DQTLLV--NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHD 212 (291)
T ss_dssp TSEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CCEEEE--ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEec
Confidence 357988 4788888887787888889999999999999999999999986
No 21
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=91.85 E-value=2 Score=37.14 Aligned_cols=93 Identities=17% Similarity=0.040 Sum_probs=63.0
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHH-HhcC-CeEEEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL-LLRH-RLHIVGEV 196 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDl-L~~~-~L~IvgEi 196 (361)
..+|++. .|+..+....+ +++.+++.+++.++++++|.+|++|+++.. ...+.. +.+. ++.+.++.
T Consensus 139 g~~i~~~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~---------~~~~~~~~~~~~~~~~~~~~ 206 (268)
T 3qax_A 139 YSSVAVQ--TGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLE---------PSVGRVVLKDFPNLVATRLE 206 (268)
T ss_dssp SSCEEEE--TTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEEC---------HHHHHHHGGGCTTEEEEEEE
T ss_pred CCEEEEe--cCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEec---------HHHHHHHHHhCCCcEEecCc
Confidence 3478874 68877777665 677889999999999999999999998875 223332 2333 47777755
Q ss_pred EEeee----eEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 197 QLVVN----HCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 197 ~lpI~----h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
.-... .+++.+++ +|+-..+-.++|.+
T Consensus 207 ~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 237 (268)
T 3qax_A 207 LPPECWVLGCGLGVAKD-----------RPEEIQTIQQAITD 237 (268)
T ss_dssp CCGGGCBCCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 44444 55555543 45556666666654
No 22
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=91.43 E-value=0.98 Score=39.77 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=57.5
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCC------CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHH-HHhc--CC
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPK------CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYD-LLLR--HR 189 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~------~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlD-lL~~--~~ 189 (361)
..+||+. .|+..+....+.+++ .+++.+++.++++++|.+|++|+.+..-. ++. ++.+ .+
T Consensus 137 g~~v~v~--~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~ 205 (259)
T 4dz1_A 137 KYSIGYP--RGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEP---------VYFTFKNKKKMP 205 (259)
T ss_dssp GSCEEEE--TTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHH---------HHHHHHHTSCCC
T ss_pred CCEEEEe--CCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHhccCCCc
Confidence 3578885 688888877777765 68899999999999999999999987622 232 2222 34
Q ss_pred eEEEEEEEEeeeeEeeeCCC
Q 018090 190 LHIVGEVQLVVNHCLLGLPG 209 (361)
Q Consensus 190 L~IvgEi~lpI~h~Lla~~g 209 (361)
+.+.....-+...+++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~k~ 225 (259)
T 4dz1_A 206 IESRYVFKNVDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEEEEEEEEEEETT
T ss_pred eEeecccCCCceEEEEEeCC
Confidence 66666665566677766654
No 23
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=90.59 E-value=1.9 Score=40.73 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCCccEEEEeCCCCcHHHHHHHHHC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeE
Q 018090 116 DGTKVRVAYQGLPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 191 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTySe~AA~~~f---~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~ 191 (361)
..++.+++..|+ ||-+|.++..+. + +.+.+|+....+++.+|..|++|.++...- ....++...+++
T Consensus 127 ~p~~~~~g~~g~-Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~~--------~~~~~i~~g~lr 197 (301)
T 2qpq_A 127 TNTQVTYGSCGN-GTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTAS--------SAIPFIKAGKLQ 197 (301)
T ss_dssp SSCCCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEHH--------HHHHHHHTTSEE
T ss_pred CCCceEEecCCC-CcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcHH--------HHHHHHhcCCeE
Confidence 345667887776 999999987654 2 356789999999999999999999987522 233444444566
Q ss_pred EEEE----------------------EEEeeeeEeeeCCCCCccCccEEE---echHHHHHHHHHHHhcCCeEEeccCHH
Q 018090 192 IVGE----------------------VQLVVNHCLLGLPGVLKEELKRVF---SHPQALAQCEMTLSNLGIVRISADDTA 246 (361)
Q Consensus 192 IvgE----------------------i~lpI~h~Lla~~g~~l~~Ik~Vy---SHPqALaQC~~fL~~~~~~~i~~~STA 246 (361)
+.+- +.+...+.|++.+|++.+-+.++- .--.+..+.++++++.++... ..+.+
T Consensus 198 ~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~~~~-~~~~~ 276 (301)
T 2qpq_A 198 ALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTA-SDGPE 276 (301)
T ss_dssp EEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTCEEE-EECHH
T ss_pred EEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCCcCC-CCCHH
Confidence 5542 223445778888886432222221 111112334556666676544 34556
Q ss_pred HHHHHHHhc
Q 018090 247 GAAQMVASI 255 (361)
Q Consensus 247 ~AA~~va~~ 255 (361)
+..+++.+.
T Consensus 277 ~~~~~~~~~ 285 (301)
T 2qpq_A 277 VFQKMVETD 285 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666643
No 24
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=90.57 E-value=3.1 Score=35.78 Aligned_cols=90 Identities=13% Similarity=-0.000 Sum_probs=61.6
Q ss_pred EEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHH-Hhc--CCeEEEEEE-
Q 018090 121 RVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL-LLR--HRLHIVGEV- 196 (361)
Q Consensus 121 rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDl-L~~--~~L~IvgEi- 196 (361)
+||+. .|+..+....+. +.+++.+++.++++++|.+|++|+.+..- .++.. +.+ .++.++++.
T Consensus 108 ~igv~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~---------~~~~~~~~~~~~~~~~~~~~~ 174 (232)
T 3i6v_A 108 IVAAQ--TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADR---------DYLVPIVAESGGELMFVGDDV 174 (232)
T ss_dssp EEEEE--TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEH---------HHHHHHHHHTTTSSEEEEEEE
T ss_pred CEEEe--cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEECh---------HHHHHHHHhCCCCeEEecCCC
Confidence 89985 588877776664 67899999999999999999999988752 22232 222 458888763
Q ss_pred EEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 197 QLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 197 ~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
..+...+++.+++ +|+-..+..+.|.+
T Consensus 175 ~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 201 (232)
T 3i6v_A 175 PLGGGVGMGLRES-----------DGELRGKFDAAITS 201 (232)
T ss_dssp ECSSCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 4445566665543 45555555566554
No 25
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=90.26 E-value=9.1 Score=35.47 Aligned_cols=170 Identities=9% Similarity=0.006 Sum_probs=98.9
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeecccccc--------
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENSVGGS-------- 177 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f--------~~~e~vp~~s-----f~eVf~aV~~g~~d~gVVPIENS~~G~-------- 177 (361)
..|+++.-|+|+..++++..|- ++.++..+.+ -.+++++|..|.+|++++..-+ ..|.
T Consensus 2 ~lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~ 80 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDG 80 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGG
T ss_pred eeEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhc
Confidence 3689999999998888877652 2355544443 3799999999999999986321 0000
Q ss_pred -----------------hHHhHH-HHhcCCeEEEEEEEEeeeeEeeeCCCC-CccCcc--EEEechHHHHHHHHHHHhcC
Q 018090 178 -----------------IHRNYD-LLLRHRLHIVGEVQLVVNHCLLGLPGV-LKEELK--RVFSHPQALAQCEMTLSNLG 236 (361)
Q Consensus 178 -----------------V~~tlD-lL~~~~L~IvgEi~lpI~h~Lla~~g~-~l~~Ik--~VySHPqALaQC~~fL~~~~ 236 (361)
..+.++ .+.+.++++.+-....-.+ +..++.+ +++|++ +|..- ... -..+++.+|
T Consensus 81 lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 156 (301)
T 2pfz_A 81 LPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVG 156 (301)
T ss_dssp STTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcC
Confidence 111121 3345678888755444444 4444333 566765 56553 222 257888889
Q ss_pred CeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCce-EEEEEee
Q 018090 237 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVT-RFLILAR 296 (361)
Q Consensus 237 ~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~T-RFlvl~r 296 (361)
+..++. +.++....+..+ .-.|+..+.......++.=+.+.+......++ -++++++
T Consensus 157 a~pv~~-~~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 214 (301)
T 2pfz_A 157 AQPVTV-QQAELAQAMATG--VIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNK 214 (301)
T ss_dssp CEEEEC-CGGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEH
T ss_pred Ccceec-CHHHHHHHHhcC--eeeEEecCccccccccHHHHhhhheecccccceeEEEEcH
Confidence 877666 334444444443 23466777766666666544555543333344 4444554
No 26
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=90.08 E-value=2.4 Score=37.68 Aligned_cols=93 Identities=15% Similarity=0.056 Sum_probs=60.5
Q ss_pred cEEEEeCCCCcHHHHHHHHHC----CCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-c----CCe
Q 018090 120 VRVAYQGLPGAYSEAAARKAY----PKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-R----HRL 190 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f----~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~----~~L 190 (361)
.+||+. .|+..+.....++ .+.+++++.+..+++++|.+|++|+++... ..+..+. + ..+
T Consensus 131 ~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~---------~~~~~~~~~~~~~~~~ 199 (287)
T 2vha_A 131 KAVVVT--SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDD---------ALLAGERAKAKKPDNW 199 (287)
T ss_dssp CEEEEE--TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEH---------HHHHHHHTTSSSGGGE
T ss_pred CEEEEe--CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeCh---------HHHHHHHHhCCCCCce
Confidence 579874 7888887776654 357889999999999999999999988752 2222222 1 145
Q ss_pred EEEEEEEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 191 HIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
.+++....+....++.+++ +|+-..+..++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 232 (287)
T 2vha_A 200 DIVGKPQSQEAYGCMLRKD-----------DPQFKKLMDDTIAQ 232 (287)
T ss_dssp EEESCCSCEEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred EecCCccccCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 6665433344455555543 35555556666654
No 27
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=89.65 E-value=1.2 Score=42.36 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=77.5
Q ss_pred CccEEEEeCCCCcHHHHHHHHHC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEE
Q 018090 118 TKVRVAYQGLPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIV 193 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA~~~f---~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~Iv 193 (361)
++.+++..|. ||-+|.++..+. + +...+|+....+++.+|..|++|.++...- ....++...++++.
T Consensus 138 ~~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~--------~~~~~i~~g~lr~L 208 (312)
T 2f5x_A 138 DKISLANAGI-GAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTT--------NTTQQITSGKVKAY 208 (312)
T ss_dssp GGCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEHH--------HHHHHHHTTSSEEE
T ss_pred CceEEeCCCC-CcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEechH--------HHHHHHHcCCeEEE
Confidence 3567777776 899999987654 2 356789999999999999999999987532 23334444455554
Q ss_pred EE----------------------EEEeeeeEeeeCCCCCccCccEEE---echHHHHHHHHHHHhcCCeEEecc-CHHH
Q 018090 194 GE----------------------VQLVVNHCLLGLPGVLKEELKRVF---SHPQALAQCEMTLSNLGIVRISAD-DTAG 247 (361)
Q Consensus 194 gE----------------------i~lpI~h~Lla~~g~~l~~Ik~Vy---SHPqALaQC~~fL~~~~~~~i~~~-STA~ 247 (361)
+- +.+...+.|++.+|++.+-+.++- .--.+....++++++.++...... +.++
T Consensus 209 av~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~~~~~~~~~~~~ 288 (312)
T 2f5x_A 209 AVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLGAEVLTNEANPEA 288 (312)
T ss_dssp EECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHTTCEECGGGCSHHH
T ss_pred EEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCCcccCCCCCHHH
Confidence 32 223345678888886432222211 111112234556666666543321 5566
Q ss_pred HHHHHHhc
Q 018090 248 AAQMVASI 255 (361)
Q Consensus 248 AA~~va~~ 255 (361)
..+++.+.
T Consensus 289 ~~~~~~~~ 296 (312)
T 2f5x_A 289 LQAKVKQQ 296 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666643
No 28
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=89.62 E-value=1.8 Score=36.17 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=40.5
Q ss_pred CccEEEEeCCCCcHHHHHHHHHCCC-CceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 118 TKVRVAYQGLPGAYSEAAARKAYPK-CETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA~~~f~~-~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
...+||+. .|+..+.-..+.+++ .+++.+.+.++++++|.+|++|+.+..
T Consensus 108 ~g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 158 (227)
T 3tql_A 108 KGKIIGVQ--GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGD 158 (227)
T ss_dssp TTCEEEEE--TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESC
T ss_pred CCCEEEEE--ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeC
Confidence 34689876 466666666666666 899999999999999999999998865
No 29
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=89.61 E-value=0.33 Score=40.47 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=29.3
Q ss_pred EEEE-EEecCCcchHHHHHHHHHHCCccccceeeec
Q 018090 309 TSIV-FTLEEGPGMLFKALAVFALRDINLTKIESRP 343 (361)
Q Consensus 309 tSi~-f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP 343 (361)
++++ +.++|+||.|.++++.|+++|||+..+.+.+
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~ 107 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA 107 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc
Confidence 4444 4789999999999999999999998777654
No 30
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=89.39 E-value=0.77 Score=39.89 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+++..
T Consensus 150 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 150 QKKVGAQ--KGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp -CEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred CCeEEEe--cCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 4689874 688888877788888899999999999999999999999876
No 31
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=88.99 E-value=0.91 Score=38.36 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=41.5
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
..+||+. .|+..+....+.+++.+++.+++..+++++|.+|++|+++..
T Consensus 112 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 112 GKKVGLE--NGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp TCEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEEe--cCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 3578884 677777777767778889999999999999999999998876
No 32
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=88.65 E-value=15 Score=34.01 Aligned_cols=137 Identities=15% Similarity=0.085 Sum_probs=79.2
Q ss_pred CCccEEEEeCCCCcHHHHHHHH---HCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHH-hcC
Q 018090 117 GTKVRVAYQGLPGAYSEAAARK---AYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LRH 188 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~AA~~---~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~~ 188 (361)
...++|+|..-.+...-..|.. +|. ++++++..+..++++++.+|++|+++.... .++... ...
T Consensus 51 ~~~l~vg~~~~~~~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~ 122 (341)
T 3un6_A 51 QQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIE--------LAMKSKQKGS 122 (341)
T ss_dssp CCEEEEEECSSGGGHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHH--------HHHHHHHTTC
T ss_pred CceEEEEEEeccccHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchH--------HHHHHHHCCC
Confidence 3467899975433333344443 553 267889999999999999999999987533 222222 234
Q ss_pred CeEEEEEEEEeeeeEeeeCCCC---CccCc---cEEEechHH---HHHHHHHHHhcCC-----eEEeccCHHHHHHHHHh
Q 018090 189 RLHIVGEVQLVVNHCLLGLPGV---LKEEL---KRVFSHPQA---LAQCEMTLSNLGI-----VRISADDTAGAAQMVAS 254 (361)
Q Consensus 189 ~L~IvgEi~lpI~h~Lla~~g~---~l~~I---k~VySHPqA---LaQC~~fL~~~~~-----~~i~~~STA~AA~~va~ 254 (361)
++.+++-.. +-...|+++++. +++|+ ++|..-... ....+.+|++.++ +++.. +..++...+..
T Consensus 123 ~~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~ 200 (341)
T 3un6_A 123 NIKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE 200 (341)
T ss_dssp CCEEEEESC-EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT
T ss_pred CeEEEeecC-CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc
Confidence 677766532 334567777653 45666 466543211 1123457777653 44555 45566666665
Q ss_pred cCCCCeEEecC
Q 018090 255 IGERDTGAVAS 265 (361)
Q Consensus 255 ~~~~~~AAIas 265 (361)
+. - .|++..
T Consensus 201 G~-v-Da~~~~ 209 (341)
T 3un6_A 201 HR-I-TGYSVA 209 (341)
T ss_dssp TS-C-SEEEEE
T ss_pred CC-C-CEEEec
Confidence 42 2 345443
No 33
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=88.56 E-value=13 Score=34.33 Aligned_cols=170 Identities=12% Similarity=0.024 Sum_probs=96.4
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeecccccc--------
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENSVGGS-------- 177 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f--------~~~e~vp~~s-----f~eVf~aV~~g~~d~gVVPIENS~~G~-------- 177 (361)
..|+++.-|+|+..+.++..|. ++.++..+.+ -.+++++|..|.+|.+++..-+. .|.
T Consensus 3 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~-~~~~p~~~~~~ 81 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSAL-GNEDPLFEIDS 81 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGG-TTTCGGGGGGG
T ss_pred EEEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhh-hccCccccccc
Confidence 4689999999988888876642 2344544443 37899999999999998863211 000
Q ss_pred -----------------hHHhH-HHHhcCCeEEEEEEEEeeeeEeeeCCC-CCccCcc--EEEechHHHHHHHHHHHhcC
Q 018090 178 -----------------IHRNY-DLLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNLG 236 (361)
Q Consensus 178 -----------------V~~tl-DlL~~~~L~IvgEi~lpI~h~Lla~~g-~~l~~Ik--~VySHPqALaQC~~fL~~~~ 236 (361)
..+.+ +.+.+.++++.+-....-.+ +..++. .+++|++ +|..- ... -.++++.+|
T Consensus 82 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 157 (301)
T 2pfy_A 82 VPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMG 157 (301)
T ss_dssp STTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcC
Confidence 01111 23345678887754444443 444433 3566765 56553 222 256888889
Q ss_pred CeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCce-EEEEEee
Q 018090 237 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVT-RFLILAR 296 (361)
Q Consensus 237 ~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~T-RFlvl~r 296 (361)
+..++.. .++....+..+ .-.|+..+.......++.=+.+.+......++ -++++++
T Consensus 158 a~pv~~~-~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~k~~~~~~~~~~~~~~~~n~ 215 (301)
T 2pfy_A 158 AVPTTVQ-TPEVPQAFSTG--VIDAMLTSPATGVDSQAWDYVKYYYDAQAFIPQSFVIANK 215 (301)
T ss_dssp SEEEECC-GGGHHHHHHTT--SCSBEEECHHHHHHTTGGGTCCEEEECCCCCCEEEEEEEH
T ss_pred Ccceecc-HHHHHHHHhcc--eeeeEecCccccccccHHHHhhhhcccccccceeeEEEcH
Confidence 8776653 33434434433 23456777666555565444444443333334 3444444
No 34
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=88.48 E-value=0.72 Score=39.51 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=42.8
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
..+||+. .|+..+....+.+++.+++.+++..+++++|.+|++|+.+..
T Consensus 125 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 125 GVTAIVN--PGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp TCEEEEC--TTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred CcEEEEc--CCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 4678875 688888888888888999999999999999999999998875
No 35
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=88.29 E-value=4.1 Score=34.00 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=51.9
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHH-hc---CCeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LR---HRLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~---~~L~Ivg 194 (361)
..+|++. .|+..+....+ .+.+++.+.+..+++++|.+|++|+.+.+-. ++..+ .+ ..+.+.+
T Consensus 112 g~~i~~~--~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~---------~~~~~~~~~~~~~~~~~~ 178 (228)
T 2pyy_A 112 GKVVATT--AGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAP---------VLLFYAANEGKGKVEIVG 178 (228)
T ss_dssp TCEEEEE--TTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHTTTTTTEEEEE
T ss_pred CCeEEEE--cCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCCcEEEec
Confidence 3578884 56665554443 3567889999999999999999999998722 23222 22 2577777
Q ss_pred EEEEeeeeEeeeCCC
Q 018090 195 EVQLVVNHCLLGLPG 209 (361)
Q Consensus 195 Ei~lpI~h~Lla~~g 209 (361)
...-+..++++.+++
T Consensus 179 ~~~~~~~~~~~~~~~ 193 (228)
T 2pyy_A 179 SILREESYGIILPNN 193 (228)
T ss_dssp EEEEEEEECCEECTT
T ss_pred ccccceeEEEEEeCC
Confidence 655455566665543
No 36
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=88.24 E-value=1.1 Score=39.24 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=42.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+|+.. .|+..+....+.++..+++.+++..+++++|.+|++|+.+..
T Consensus 124 ~~i~v~--~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 124 ANIAAQ--KGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp SEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred CEEEec--CCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 578775 688888888888999999999999999999999999998864
No 37
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=86.68 E-value=1.3 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=31.1
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHHCCccccceeee
Q 018090 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 307 ~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
..+.|.+..+|+||.|+++.+.|+.+|+|+..+...
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence 355666777899999999999999999999988765
No 38
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=86.44 E-value=1.1 Score=39.32 Aligned_cols=94 Identities=7% Similarity=0.011 Sum_probs=59.9
Q ss_pred ccEEEEeCCCCcHHHHHHHHH-------CCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHH-hc---
Q 018090 119 KVRVAYQGLPGAYSEAAARKA-------YPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LR--- 187 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~-------f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~--- 187 (361)
..+||+. .|+..+....++ +++.+++.+++.++++++|.+|++|+.+..-. ++..+ .+
T Consensus 127 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~ 195 (268)
T 3hv1_A 127 GKTLGAQ--AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRV---------YANYYLEKSGV 195 (268)
T ss_dssp TCCEEEE--TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHH---------HHHHHHHHTTC
T ss_pred CCEEEEE--eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHH---------HHHHHHHhCCC
Confidence 3578885 566666544332 23367899999999999999999999997632 23322 22
Q ss_pred -CCeEEEEEEEEeeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 188 -HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 188 -~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
.++.+.+....+...+++.+++ +|+-..+..++|.+
T Consensus 196 ~~~l~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 232 (268)
T 3hv1_A 196 LDQYNVMPAGYEGESFAVGARKV-----------DKTLIKKINQGFET 232 (268)
T ss_dssp GGGEEEEECSSCCEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCceEECCCCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 3477776554455555555542 45555666666654
No 39
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=86.35 E-value=1.7 Score=36.71 Aligned_cols=78 Identities=9% Similarity=-0.038 Sum_probs=51.7
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHH-hc---CCeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LR---HRLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~---~~L~Ivg 194 (361)
..+|++. .|+..+....+. +.+++.+.+..+++++|.+|++|+++..-. ++..+ .+ ..+.+.+
T Consensus 116 g~~v~~~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~ 182 (233)
T 1ii5_A 116 NKEVAVV--RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDRP---------ALIYYTRQNPNLNLEVTE 182 (233)
T ss_dssp TCEEEEE--TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEEHH---------HHHHHHHHCGGGCEEECS
T ss_pred CCeEEEE--CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeCHH---------HHHHHHHhCCCCcEEEeC
Confidence 3578885 567666655443 568899999999999999999999887622 22222 11 2466665
Q ss_pred EEEEeeeeEeeeCCC
Q 018090 195 EVQLVVNHCLLGLPG 209 (361)
Q Consensus 195 Ei~lpI~h~Lla~~g 209 (361)
....+..++++.+++
T Consensus 183 ~~~~~~~~~~~~~k~ 197 (233)
T 1ii5_A 183 IRVSLEPYGFVLKEN 197 (233)
T ss_dssp CCSEEEEEEEEEETT
T ss_pred ccccccceEEEEcCC
Confidence 544445566666654
No 40
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=86.26 E-value=3.8 Score=36.74 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=59.8
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHH-HhcC---CeEEEE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL-LLRH---RLHIVG 194 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDl-L~~~---~L~Ivg 194 (361)
..+|++ +.|+..+....++ +.+++.+.+..+++.+|.+|++|++++.- .++.. +.+. ++.+++
T Consensus 164 G~~v~v--~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~---------~~~~~~~~~~~~~~l~~~~ 230 (283)
T 2yln_A 164 GVKTAQ--SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDE---------LAVLDYLKKNPNAGVKIVW 230 (283)
T ss_dssp TSEEEE--CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEH---------HHHHHHHHHSTTSSEEEEE
T ss_pred CCEEEE--ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecH---------HHHHHHHHhCCCCcEEEcc
Confidence 357886 6788777665553 56889999999999999999999999862 22222 2222 377766
Q ss_pred -EEEE-eeeeEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 195 -EVQL-VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 195 -Ei~l-pI~h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
...- +....++.+++ +|+-..+..++|.+
T Consensus 231 ~~~~~~~~~~~i~~~k~-----------~~~l~~~i~~al~~ 261 (283)
T 2yln_A 231 SAPADEKVGSGLIVNKG-----------NDEAVAKFSTAINE 261 (283)
T ss_dssp ECCGGGCEEECCEEESS-----------CHHHHHHHHHHHHH
T ss_pred CcccCCcccEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 3333 34445555543 35556666666654
No 41
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=86.23 E-value=4.2 Score=38.68 Aligned_cols=128 Identities=10% Similarity=-0.009 Sum_probs=77.2
Q ss_pred CCccEEEEeCCCCcHHHHHHHHHCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEE
Q 018090 117 GTKVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 192 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~AA~~~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~I 192 (361)
.++.+++..|+ ||-.|.++..+.. +.+.+|+....+++.+|..|++|.++...- ....++...++++
T Consensus 141 p~~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~ 211 (314)
T 2dvz_A 141 PGKYSYGSSGT-CGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLP--------SSMPQIQAGKLRA 211 (314)
T ss_dssp TTTCEEEESCT-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEHH--------HHHHHHHTTSSEE
T ss_pred CCcEEEeCCCC-CcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcHH--------HHHHHHHcCCEEE
Confidence 34567887776 9999999876542 356789999999999999999999987532 2334444445655
Q ss_pred EEEE----------------------EEeeeeEeeeCCCCCccCccEEE---echHHHHHHHHHHHhcCCeEEeccCHHH
Q 018090 193 VGEV----------------------QLVVNHCLLGLPGVLKEELKRVF---SHPQALAQCEMTLSNLGIVRISADDTAG 247 (361)
Q Consensus 193 vgEi----------------------~lpI~h~Lla~~g~~l~~Ik~Vy---SHPqALaQC~~fL~~~~~~~i~~~STA~ 247 (361)
.+-. .+...+.|++.+|++.+-+.++. .--.+....++++++.++... ..+.++
T Consensus 212 Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g~~~~-~~~~~~ 290 (314)
T 2dvz_A 212 MAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPS-GNTPEE 290 (314)
T ss_dssp EEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTEEEC-CCCHHH
T ss_pred EEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCCcCC-CCCHHH
Confidence 5422 23345678888886432222221 111112234455555565432 345566
Q ss_pred HHHHHHh
Q 018090 248 AAQMVAS 254 (361)
Q Consensus 248 AA~~va~ 254 (361)
..+++.+
T Consensus 291 ~~~~~~~ 297 (314)
T 2dvz_A 291 FAKEIKE 297 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 42
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=85.69 E-value=7.2 Score=36.90 Aligned_cols=161 Identities=11% Similarity=-0.009 Sum_probs=92.1
Q ss_pred CCCccEEEEeCCCCcHHHHHHHHHC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeecc---------
Q 018090 116 DGTKVRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENS--------- 173 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTySe~AA~~~f--------~~~e~vp~~s-----f~eVf~aV~~g~~d~gVVPIENS--------- 173 (361)
.....|+++..|+|+....++.+|. ++.++..+.+ -.+++++|..|.+|.+++..-..
T Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~ 86 (327)
T 2hpg_A 7 AKYTLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGV 86 (327)
T ss_dssp CSEEEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGG
T ss_pred cceEEEEEccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCccHHh
Confidence 3456899999999988777776542 2244444443 37899999999999998864210
Q ss_pred -------------------------cccchHH-hHHHHhc-CCeEEEEE-EEEeeeeEeeeCCC-CCccCcc--EEEech
Q 018090 174 -------------------------VGGSIHR-NYDLLLR-HRLHIVGE-VQLVVNHCLLGLPG-VLKEELK--RVFSHP 222 (361)
Q Consensus 174 -------------------------~~G~V~~-tlDlL~~-~~L~IvgE-i~lpI~h~Lla~~g-~~l~~Ik--~VySHP 222 (361)
..|.+.. ..+.+.+ .++++.+- ......+ +..++. .+++|++ +|..-+
T Consensus 87 ~~lPfl~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~-~~~~~pI~s~~DLkG~KiRv~~ 165 (327)
T 2hpg_A 87 MNLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRH-FVTNKPIRKPEDLNGLRIRTPG 165 (327)
T ss_dssp GGSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-EEESSCCSSGGGGTTCEEECCS
T ss_pred ccCCeEECCCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCccee-EecCCCCCCHHHHCCCEEEeCC
Confidence 1221111 1122333 67888876 4444433 333433 3667776 676543
Q ss_pred HHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeecccc
Q 018090 223 QALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQ 282 (361)
Q Consensus 223 qALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~Iq 282 (361)
-. -..++++.+|+..++..- ++....+..+ .-.|+..+.....-.++.=+.+.+.
T Consensus 166 ~~--~~~~~~~alGa~pv~m~~-~Evy~ALq~G--~VDg~~~p~~~~~~~~~~ev~ky~~ 220 (327)
T 2hpg_A 166 AP--AWQESIRSLGAIPVAVNF-GEIYTAVQTR--AVDGAELTYANVYNGGLYEVLKYMS 220 (327)
T ss_dssp SH--HHHHHHHHHTSEEECCCG-GGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEEE
T ss_pred CH--HHHHHHHHcCCEeeecCH-HHHHHHHHcC--CeeEEECCHHHHHHcChhhhccEEE
Confidence 22 235788888987665532 3333333333 2356666766554455543444443
No 43
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=85.48 E-value=21 Score=32.47 Aligned_cols=133 Identities=17% Similarity=0.065 Sum_probs=78.7
Q ss_pred CCCCccEEEEeCCCCcHHHHHHHHHCC------CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcC
Q 018090 115 DDGTKVRVAYQGLPGAYSEAAARKAYP------KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH 188 (361)
Q Consensus 115 ~~~~~~rIAyLGP~GTySe~AA~~~f~------~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~ 188 (361)
.....+||||......|.-.-...+|. +++++++.+..+++++|.+|++|++++... ...+......
T Consensus 26 ~~~~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~ 98 (324)
T 3ksx_A 26 AEPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDI-------PPLFAQAAGA 98 (324)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESH-------HHHHHHHTTC
T ss_pred CCCCeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCH-------HHHHHHhcCC
Confidence 345678999996433232222222442 357888889999999999999999986422 2222222345
Q ss_pred CeEEEEEEEE-eeeeEeeeCCCC---CccCcc--EEEechHH--HHHHHHHHHhcC-----CeEEeccCHHHHHHHHHhc
Q 018090 189 RLHIVGEVQL-VVNHCLLGLPGV---LKEELK--RVFSHPQA--LAQCEMTLSNLG-----IVRISADDTAGAAQMVASI 255 (361)
Q Consensus 189 ~L~IvgEi~l-pI~h~Lla~~g~---~l~~Ik--~VySHPqA--LaQC~~fL~~~~-----~~~i~~~STA~AA~~va~~ 255 (361)
++.+++-... +-...|+++++. +++|++ +|..-+-. ......+|.+.+ ++.+.. +.+++...+..+
T Consensus 99 ~~~~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G 177 (324)
T 3ksx_A 99 DLLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG 177 (324)
T ss_dssp CEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT
T ss_pred CEEEEEEecCCCCceEEEEeCCCCCCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC
Confidence 6777775532 234667777653 445553 56554322 223455777665 345554 666777766665
No 44
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=85.42 E-value=2.1 Score=36.47 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=40.3
Q ss_pred cEEEEeCCCCcHHHHHHHHHC--CCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKAY--PKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f--~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+||+. .|+..+....+.+ ++.+++.+++.++++++|.+|++|+++..
T Consensus 112 ~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 161 (239)
T 1lst_A 112 KHVGVL--QGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQD 161 (239)
T ss_dssp CEEEEE--TTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CEEEEE--cCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 579885 6888777777766 45788999999999999999999998875
No 45
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=84.72 E-value=25 Score=32.64 Aligned_cols=172 Identities=9% Similarity=-0.026 Sum_probs=97.0
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeec---------------
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIEN--------------- 172 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f------~~~e~vp~~s-----f~eVf~aV~~g~~d~gVVPIEN--------------- 172 (361)
..|+++..|+|+..++++.+|- ++.++..+.+ -.+++++|..|.+|.+++..-+
T Consensus 2 ~lk~a~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 81 (316)
T 2vpn_A 2 NWRYAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPY 81 (316)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCe
Confidence 3689999999999888887652 3455555554 3899999999999999876211
Q ss_pred ---c-c-------cc--chHHh-HHHHhcCCeEEEEEEEEeeeeEeeeCCC-CCccCcc--EEEechHHHHHHHHHHHhc
Q 018090 173 ---S-V-------GG--SIHRN-YDLLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSNL 235 (361)
Q Consensus 173 ---S-~-------~G--~V~~t-lDlL~~~~L~IvgEi~lpI~h~Lla~~g-~~l~~Ik--~VySHPqALaQC~~fL~~~ 235 (361)
+ . .| .+.+. .+.+.+.++++.+-......+.. .++. .+++|++ +|..-+-.. -.++++.+
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~-~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~l 158 (316)
T 2vpn_A 82 LMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPL--LAETYKAF 158 (316)
T ss_dssp CSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHH--HHHHHHHH
T ss_pred ecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEe-cCCCCCChHHhCCCEEEeCCCHH--HHHHHHHc
Confidence 1 0 12 11111 12334467888876655544433 4333 3667776 666533222 24788888
Q ss_pred CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCce-EEEEEee
Q 018090 236 GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVT-RFLILAR 296 (361)
Q Consensus 236 ~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~T-RFlvl~r 296 (361)
|+..++..- ++....+..+ .-.|+..+.......++.=+.+.+.+..+.++ -++++++
T Consensus 159 Ga~pv~m~~-~Evy~ALq~G--~VDg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 159 GATPTPLPW-GEVYGGLQTG--IIDGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp TCEEEECCG-GGHHHHHHHT--SCSEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC--CcceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 987765532 2333333333 23466666655555565444445544334443 3444444
No 46
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=84.08 E-value=2.2 Score=36.61 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=38.1
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCC----CceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPK----CETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~----~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
..+|++. .|+..+....+++.+ .+++.+.+..+++++|.+|++|+++..
T Consensus 148 g~~i~~~--~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 200 (259)
T 2v25_A 148 GANIGVA--QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVD 200 (259)
T ss_dssp TCEEEEE--TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CCEEEEe--cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEec
Confidence 3568885 577666666655432 378899999999999999999999875
No 47
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=82.96 E-value=2.4 Score=37.45 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=40.2
Q ss_pred cEEEEeCCCCcHHHHHHHHHCC-CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKAYP-KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~-~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+|++. .|+..+....+.++ ..+++.+.+..+++++|.+|++|+++.+
T Consensus 148 ~~i~~~--~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~ 196 (272)
T 2pvu_A 148 KTIGVQ--NATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITD 196 (272)
T ss_dssp SCEEEE--TTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CeEEEE--cCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeC
Confidence 568885 47777777777666 6788899999999999999999999986
No 48
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=81.79 E-value=2.6 Score=36.48 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=39.1
Q ss_pred cEEEEeCCCCcHHHHHHHHH-CCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKA-YPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~-f~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+||+ +.|+..+....+. +++.+++.+++.++++++|.+|++|+++..
T Consensus 125 ~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 125 AKIGA--PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp CCEEE--CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEE--ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 56887 5688777766554 455688999999999999999999998875
No 49
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=81.61 E-value=0.11 Score=49.34 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=35.5
Q ss_pred ccCCCCCCCcccchhhhhcccccccccccccCCcc-cccc--ccccc
Q 018090 59 VEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL-PTLV--YGQIA 102 (361)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l-p~~~--~~~~~ 102 (361)
+.=|+-+.|+++++|++|++.|++|+.|++++..+ -.+| .+|||
T Consensus 219 ~mIE~H~~pd~al~Dg~qsl~p~~l~~l~~~i~~~~~~~g~~~~~~~ 265 (267)
T 2nwr_A 219 VFMETHPEPEKALSDASTQLPLSQLEGIIEAILEIREVASKYYETIP 265 (267)
T ss_dssp EEEEEESCGGGCSSCTTTCEEGGGHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred EEEEecCCcccCCCccccCCCHHHHHHHHHHHHHHHHHhCCccccCc
Confidence 44566789999999999999999999999999776 5555 66665
No 50
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=79.94 E-value=1.8 Score=38.23 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=31.3
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHHCCccccceeee
Q 018090 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 307 ~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
.++.|.+.-+|+||.++.+-+.|+++|+|+..+...
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 456666777899999999999999999999988764
No 51
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=79.43 E-value=17 Score=30.64 Aligned_cols=94 Identities=6% Similarity=-0.028 Sum_probs=57.7
Q ss_pred ccEEEEeCCCCcHHHHHHHH---HCCC--Cceee-cCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-c---C
Q 018090 119 KVRVAYQGLPGAYSEAAARK---AYPK--CETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-R---H 188 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~---~f~~--~e~vp-~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~---~ 188 (361)
..+||+ ..|+..+....+ .++. .+++. ..+.++++++|.+|++|+.+..- .++..++ + .
T Consensus 115 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~---------~~~~~~~~~~~~~ 183 (246)
T 4eq9_A 115 GKSTEV--VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDK---------IGVETVIKNQGLD 183 (246)
T ss_dssp TCEEEE--CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEH---------HHHHHHHHHHTCT
T ss_pred CCEEEE--ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecH---------HHHHHHHHhCCCC
Confidence 458888 578888777766 4553 45553 35999999999999999998752 2333222 1 2
Q ss_pred CeEEEEEEEEeee-eEeeeCCCCCccCccEEEechHHHHHHHHHHHh
Q 018090 189 RLHIVGEVQLVVN-HCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 189 ~L~IvgEi~lpI~-h~Lla~~g~~l~~Ik~VySHPqALaQC~~fL~~ 234 (361)
++.+.+....... .+++.+++ +|+-..+..+.|.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 219 (246)
T 4eq9_A 184 NLKVIELPSDQQPYVYPLLAQG-----------QDELKSFVDKRIKE 219 (246)
T ss_dssp TEEEEECCCSSCCEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred CceEecCcCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 4777664433222 33333332 45556666666654
No 52
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=77.83 E-value=38 Score=30.21 Aligned_cols=150 Identities=15% Similarity=0.026 Sum_probs=80.0
Q ss_pred CccEEEEeCCCCcHHHHHH-HHH----CCC--CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCe
Q 018090 118 TKVRVAYQGLPGAYSEAAA-RKA----YPK--CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA-~~~----f~~--~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L 190 (361)
+.+|||+......| ..|. ..+ +++ .+++.+.+-.++++++.+|++|+++.... ......-...++
T Consensus 3 ~~lrig~~~~~~~~-~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~-------~~~~~~~~g~~~ 74 (308)
T 2x26_A 3 EALRIGYQKGSIGM-VLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDI-------PPIFAQAAGADL 74 (308)
T ss_dssp SEEEEEECTTCHHH-HHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSH-------HHHHHHHTTCCE
T ss_pred eEEEEEccCCchHH-HHHHhcChHhHhcCCCceEEEECCCcHHHHHHHHCCCCCEEcccCc-------HHHHHHhcCCCe
Confidence 45789998643223 2222 112 333 56788888889999999999999986322 111111112356
Q ss_pred EEEEEEE-EeeeeEeeeCCCC---CccCcc--EEEechHH--HHHHHHHHHhcCC-----eEEeccCHHHHHHHHHhcCC
Q 018090 191 HIVGEVQ-LVVNHCLLGLPGV---LKEELK--RVFSHPQA--LAQCEMTLSNLGI-----VRISADDTAGAAQMVASIGE 257 (361)
Q Consensus 191 ~IvgEi~-lpI~h~Lla~~g~---~l~~Ik--~VySHPqA--LaQC~~fL~~~~~-----~~i~~~STA~AA~~va~~~~ 257 (361)
.+++... .+....++++++. +++|++ +|...+-. ......+|.+.++ +.+ ..+..++...+..+.
T Consensus 75 ~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~-~~~~~~~~~al~~G~- 152 (308)
T 2x26_A 75 VYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPT-YLTPADARAAFQQGN- 152 (308)
T ss_dssp EEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEE-ECCHHHHHHHHHTTS-
T ss_pred EEEEEecCCCCceEEEEeCCCCCCCHHHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEE-ecChHHHHHHHHcCC-
Confidence 6655432 2335667777653 345553 56553221 2234566766653 223 335666777776653
Q ss_pred CCeEEecCHhhHH----HcCCceee
Q 018090 258 RDTGAVASAQAAE----IYGLDILA 278 (361)
Q Consensus 258 ~~~AAIas~~AA~----~YgL~iLa 278 (361)
-.|++.....+. ..+++++.
T Consensus 153 -vDa~~~~~~~~~~~~~~~~~~~l~ 176 (308)
T 2x26_A 153 -VDAWAIWDPYYSAALLQGGVRVLK 176 (308)
T ss_dssp -SSEEEEETTHHHHHHHHSSEEEEE
T ss_pred -CCEEEecchhHHHHHhcCCcEEEe
Confidence 345554443322 23555554
No 53
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=76.78 E-value=20 Score=29.36 Aligned_cols=138 Identities=15% Similarity=0.042 Sum_probs=73.7
Q ss_pred CCCccEEEEeCCCCcH-HHHHHH---HHCCCCceeec-CCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCe
Q 018090 116 DGTKVRVAYQGLPGAY-SEAAAR---KAYPKCETVPC-DQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTy-Se~AA~---~~f~~~e~vp~-~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L 190 (361)
..+..+||+...-+.+ --.... +.+|+.++... .+-.++.+.+.+|++|+|++.-... ..+
T Consensus 6 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~-------------~~~- 71 (222)
T 4ab5_A 6 EAGELRIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEK-------------QNG- 71 (222)
T ss_dssp TTEEEEEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCC-------------CTT-
T ss_pred ccceEEEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCC-------------cCC-
Confidence 3455677766443332 112222 23576554333 2346789999999999999853211 111
Q ss_pred EEEEEEEEeeeeEeeeCCCC--------CccCcc---EEE-ech-HHHHHHHHHHHhcCC--eEEeccCHHHHHHHHHhc
Q 018090 191 HIVGEVQLVVNHCLLGLPGV--------LKEELK---RVF-SHP-QALAQCEMTLSNLGI--VRISADDTAGAAQMVASI 255 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~g~--------~l~~Ik---~Vy-SHP-qALaQC~~fL~~~~~--~~i~~~STA~AA~~va~~ 255 (361)
+..+.......++++.++- +++++. -|. +.. ....+..+++.+.+. ....++|...+.++|..+
T Consensus 72 -~~~~~l~~~~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 150 (222)
T 4ab5_A 72 -ISFQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR 150 (222)
T ss_dssp -EEEEEEEEEEEEEEECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT
T ss_pred -eEEEEeecCcEEEEecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC
Confidence 2333334444555554442 334432 333 111 223445566665542 256777777777877765
Q ss_pred CCCCeEEecCHhhHHH
Q 018090 256 GERDTGAVASAQAAEI 271 (361)
Q Consensus 256 ~~~~~AAIas~~AA~~ 271 (361)
...+|.+...++.
T Consensus 151 ---~gi~~~p~~~~~~ 163 (222)
T 4ab5_A 151 ---RGIAALPYWTVMP 163 (222)
T ss_dssp ---SCBEEEEHHHHHH
T ss_pred ---CeEEEcchHHhHH
Confidence 3466777776653
No 54
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=76.15 E-value=48 Score=30.52 Aligned_cols=116 Identities=12% Similarity=-0.036 Sum_probs=67.1
Q ss_pred Cce--eecCC-HHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc
Q 018090 143 CET--VPCDQ-FEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK 216 (361)
Q Consensus 143 ~e~--vp~~s-f~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik 216 (361)
+++ +...+ ..++++++.+|++|+++.... ......-...++.+++.....-...|+++++. +++|++
T Consensus 46 v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DLk 118 (348)
T 3uif_A 46 VEWVPAAMASVGPVINEGFASGKIDFGIYGDL-------PPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDLK 118 (348)
T ss_dssp EEEEEECTTCHHHHHHHHHHTTCCCEEEEESH-------HHHHHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGGT
T ss_pred EEEEecccCCCcHHHHHHHHcCCCCEEecCcH-------HHHHHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHcC
Confidence 566 45554 678899999999999985422 11111223457787776555555677777653 445553
Q ss_pred --EEEechH--HHHHHHHHHHhcC-----CeEEeccCHHHHHHHHHhcCCCCeEEecCHhh
Q 018090 217 --RVFSHPQ--ALAQCEMTLSNLG-----IVRISADDTAGAAQMVASIGERDTGAVASAQA 268 (361)
Q Consensus 217 --~VySHPq--ALaQC~~fL~~~~-----~~~i~~~STA~AA~~va~~~~~~~AAIas~~A 268 (361)
+|...+- .......+|.+.| ++.+.. +.+++...+..+. -.|++.....
T Consensus 119 Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~--vDa~~~~~~~ 176 (348)
T 3uif_A 119 GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT--VDGFFSLFDS 176 (348)
T ss_dssp TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS--SSEEEESTTH
T ss_pred CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC--CCEEEechHH
Confidence 6654322 2233456777665 444444 5566666666653 3455554443
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=76.04 E-value=31 Score=28.62 Aligned_cols=117 Identities=13% Similarity=-0.004 Sum_probs=69.2
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC-----CccCcc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV-----LKEELK 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~-----~l~~Ik 216 (361)
+.++++..++.++++++.+|++|+++-++.-+ . +......+... .-++.....++++++. +++|++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~------~--~r~~~~~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVT------P--ERAAIEGITFT-QPYFSSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECC------H--HHHTSTTEEEC-CCCEEEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecC------c--cccccceeEEc-cceeecCeEEEEECCCCCCCCCHHHhC
Confidence 46888888999999999999999887544311 1 11000111111 1122334555555432 334443
Q ss_pred --EEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 --RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 --~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|..-.- .. ...+|.+.+...+.+.+..++.+++..+ .-.|+|.....+..
T Consensus 116 g~~v~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 116 NKEVAVVRD-TT-AVDWANFYQADVRETNNLTAAITLLQKK--QVEAVMFDRPALIY 168 (233)
T ss_dssp TCEEEEETT-SH-HHHHHHHTTCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CCeEEEECC-cc-HHHHHHHcCCCeEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 4433221 11 1346666678888899999999999876 34677777766543
No 56
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=75.97 E-value=46 Score=30.17 Aligned_cols=109 Identities=16% Similarity=0.033 Sum_probs=68.1
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh---cCCeE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRLH 191 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~---~~~L~ 191 (361)
..|||+.+...+.-..++.++|. +.+++.+.+..+..+|+.+|++|.+..-. ...++... ..++.
T Consensus 4 ~i~vG~~~~~~~~~~~~~~~~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~--------~~~l~~~~~~~g~~l~ 75 (241)
T 1xs5_A 4 TVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH--------VPHMQQFNQEHNGDLV 75 (241)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE--------HHHHHHHHHHHTCCEE
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccCC--------HHHHHHHHHHCCCCEE
Confidence 47899997654423444555663 26899999999999999999999976421 23344433 35677
Q ss_pred EEEEEEEeeeeEeeeCCCCCccCc-c--EEEe--chHHHHHHHHHHHhcC
Q 018090 192 IVGEVQLVVNHCLLGLPGVLKEEL-K--RVFS--HPQALAQCEMTLSNLG 236 (361)
Q Consensus 192 IvgEi~lpI~h~Lla~~g~~l~~I-k--~VyS--HPqALaQC~~fL~~~~ 236 (361)
+++.+...- ..+...+-.+++|+ + +|.- -|--..-...+|.+.|
T Consensus 76 ~v~~~~~~p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~aG 124 (241)
T 1xs5_A 76 SVGNVHVEP-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAG 124 (241)
T ss_dssp EEEEEEECC-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEeecccc-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHHCC
Confidence 777654332 35555544567777 2 5543 3444444555676544
No 57
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=75.04 E-value=31 Score=32.62 Aligned_cols=142 Identities=11% Similarity=-0.050 Sum_probs=83.4
Q ss_pred CCccEEEEeCCCCcHHHHHHHHHC--------CCCceeecC-----CHHHHHHHHHcCCcCeEEEeeecc---------c
Q 018090 117 GTKVRVAYQGLPGAYSEAAARKAY--------PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENS---------V 174 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~AA~~~f--------~~~e~vp~~-----sf~eVf~aV~~g~~d~gVVPIENS---------~ 174 (361)
....|+++..|+|+..+.++..+. ++.++..+. +..+++++|..|.+|++++..-.. .
T Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~ 112 (361)
T 2zzv_A 33 RYRWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFL 112 (361)
T ss_dssp CEEEEEEESSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGS
T ss_pred ceEEEEeccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccccccCcHHHHH
Confidence 346899999999977777765542 224544444 458999999999999998864211 1
Q ss_pred c---cch------HH---------hHH-HHhcCCeEEEEEEEEeeeeEeeeCCC-CCccCcc--EEEechHHHHHHHHHH
Q 018090 175 G---GSI------HR---------NYD-LLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTL 232 (361)
Q Consensus 175 ~---G~V------~~---------tlD-lL~~~~L~IvgEi~lpI~h~Lla~~g-~~l~~Ik--~VySHPqALaQC~~fL 232 (361)
. ... .. .++ .+.+.++++.+ ......+.+..++. .+++|++ +|..-. .. ..+++
T Consensus 113 ~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~g~~~~~~~~~pI~s~~DLkG~kirv~~-~~--~~~~~ 188 (361)
T 2zzv_A 113 SSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQHDLNIIHSKKPIRRFEDFKGVKLRVPG-GM--IAEVF 188 (361)
T ss_dssp SCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EECCCCCCEEESSCCCSGGGGTTCEEECCS-HH--HHHHH
T ss_pred hcCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccCCccccceeCCCcCChHHhCCCEEeecC-HH--HHHHH
Confidence 0 000 00 111 12346788888 65555454444433 3667776 565543 22 35788
Q ss_pred HhcCCeEEeccCHHHHHHHHHhcCCCCeEEecC
Q 018090 233 SNLGIVRISADDTAGAAQMVASIGERDTGAVAS 265 (361)
Q Consensus 233 ~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas 265 (361)
+.+|+..++. +.++....+..+. -.|+..+
T Consensus 189 ~~lGa~pv~~-~~~e~~~ALq~G~--VDg~~~~ 218 (361)
T 2zzv_A 189 AAAGASTVLL-PGGEVYPALERGV--IDAADFV 218 (361)
T ss_dssp HHTTCEEECC-CGGGHHHHHHTTS--CSEEECS
T ss_pred HHcCCeeeec-ChHHHHHHHHcCC--cceeecC
Confidence 8889877665 4445555555442 3455433
No 58
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=71.84 E-value=61 Score=29.73 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=85.3
Q ss_pred CCccEEEEeCCCCcHHHHHHH-----HHC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhc
Q 018090 117 GTKVRVAYQGLPGAYSEAAAR-----KAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR 187 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~AA~-----~~f---~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~ 187 (361)
...++||+.. |++..+. ..+ + +++.++.. -..+++++.+|++|+.+--.-+.+.. ..++.. .
T Consensus 15 ~~~I~Ig~~~----~te~~i~~~i~~~~Le~~G~~Ve~~~~~-~~~~~~AL~~G~iD~~~e~w~~~~~~---~~~~~~-~ 85 (280)
T 3tmg_A 15 LKSVKIGYVN----WGGETAATNVLKVVFEKMGYNAEIFSVT-TSIMYQYLASGKIDGTVSSWVPTADK---FYYEKL-K 85 (280)
T ss_dssp CEEEEEEECC----CHHHHHHHHHHHHHHHHTTEEEEEEECC-HHHHHHHHHTTSSSEEEEEEETTTTH---HHHHHH-G
T ss_pred CCCEEEEcCC----CchHHHHHHHHHHHHHHCCCceEEEECC-cHHHHHHHHCCCCcEEEeccCCcccH---HHHHHh-c
Confidence 4457888876 3332221 122 2 35677764 47789999999999877544433322 234433 3
Q ss_pred CCeEEEEEEEEeeeeEeeeCCCC---CccCcc--------EEEechHHHH---HHHHHHHhcCC-e-EEecc-CHHH---
Q 018090 188 HRLHIVGEVQLVVNHCLLGLPGV---LKEELK--------RVFSHPQALA---QCEMTLSNLGI-V-RISAD-DTAG--- 247 (361)
Q Consensus 188 ~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik--------~VySHPqALa---QC~~fL~~~~~-~-~i~~~-STA~--- 247 (361)
.++...+...-.-.+.|++++.. +++|++ +++.=|.... .....++.++. . +..+. |.+.
T Consensus 86 ~~l~~l~~~~~~~~~~l~V~~~~~i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l~~yGL~~~~~~v~~s~~~m~~ 165 (280)
T 3tmg_A 86 TKFVDLGANYEGTIQGFVVPSYVPISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVPSSESVMLA 165 (280)
T ss_dssp GGEEEEEEEEEEEEEEEEEETTSCCCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHHHHTTCTTTSEEECCCHHHHHH
T ss_pred CcEEEccccCCCceEEEEECCCCCCCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHHHhcCCCCceEEEeCCHHHHHH
Confidence 47888887766666888887754 344553 3455444332 22345555554 2 33333 3221
Q ss_pred HHHHHHhcCCCCeEE-ecCHhhHHHcCCceeec
Q 018090 248 AAQMVASIGERDTGA-VASAQAAEIYGLDILAE 279 (361)
Q Consensus 248 AA~~va~~~~~~~AA-Ias~~AA~~YgL~iLa~ 279 (361)
+.+...+.+....+. =.+--.-..|+|.+|+.
T Consensus 166 ~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 198 (280)
T 3tmg_A 166 SLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDD 198 (280)
T ss_dssp HHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred HHHHHHHCCCCEEEEEecCchhhhcCCeEEecC
Confidence 122333334444443 45556666899999874
No 59
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=71.43 E-value=3.9 Score=35.07 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.8
Q ss_pred eEEEEEE-ecCCcchHHHHHHHHHHCCccccceee
Q 018090 308 KTSIVFT-LEEGPGMLFKALAVFALRDINLTKIES 341 (361)
Q Consensus 308 KtSi~f~-~~~~PGaL~~iL~~Fa~~~INLtkIES 341 (361)
-+.|.+. ++++||.+.++++.|+++|||.-.|-+
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 4555544 789999999999999999999999864
No 60
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=70.44 E-value=39 Score=29.45 Aligned_cols=114 Identities=16% Similarity=0.055 Sum_probs=68.2
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC----CccCcc-
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~~Ik- 216 (361)
+.++++..++.++++++.+|++|... ++-.+.+- ...+.. ..-++.....|+++++. ++++++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r----------~~~~~f-s~p~~~~~~~l~~~~~~~~i~~~~dL~g 139 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG-ALFVNSAR----------ESFLSF-SRPYVRNGMVIVTRQDPDAPVDADHLDG 139 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGG----------TTTEEE-CSCSEEECEEEEEESSTTSCSSGGGCTT
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe-cccCChhh----------hcceEe-chhhccCceEEEEECCCCCCCCHHHHCC
Confidence 46788889999999999999999843 43322111 111111 11223344566666552 334432
Q ss_pred -EEEechHHHHHHHHHHHh-c-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 -RVFSHPQALAQCEMTLSN-L-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 -~VySHPqALaQC~~fL~~-~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|....- .. -..+|.+ . +++++.+.|..++.+.+..+. -.|+|.....+..
T Consensus 140 ~~i~v~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~Gr--vDa~i~~~~~~~~ 193 (267)
T 3mpk_A 140 RTVALVRN-SA-AIPLLQRRYPQAKVVTADNPSEAMLMVANGQ--ADAVVQTQISASY 193 (267)
T ss_dssp CEEEEETT-CT-HHHHHHHHCTTSEEEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred CEEEEeCC-ch-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 3333221 11 2345554 3 588899999999999998863 4678877766543
No 61
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=70.38 E-value=69 Score=29.75 Aligned_cols=172 Identities=7% Similarity=-0.044 Sum_probs=99.5
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeecc------------
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY--------PKCETVPCDQ-----FEAAFKAVELWLVDKAVLPIENS------------ 173 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f--------~~~e~vp~~s-----f~eVf~aV~~g~~d~gVVPIENS------------ 173 (361)
.+|+++.-|+|+..+.++..|. ++.++..+.+ -.+++++|..|.+|.+++..-+-
T Consensus 4 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~P~~~~~~l 83 (312)
T 2xwv_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL 83 (312)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchhhhhhccchhhhcC
Confidence 4789999888998888886642 2244444444 48999999999999999864210
Q ss_pred -------------c-ccchH-HhHHHH-hcCCeEEEEEEEEeeeeEeeeCCC-CCccCcc--EEEechHHHHHHHHHHHh
Q 018090 174 -------------V-GGSIH-RNYDLL-LRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLSN 234 (361)
Q Consensus 174 -------------~-~G~V~-~tlDlL-~~~~L~IvgEi~lpI~h~Lla~~g-~~l~~Ik--~VySHPqALaQC~~fL~~ 234 (361)
+ .|.+. +.++-+ .+.++++.+-......+. ..++. .+++|++ +|..-+.. -...+++.
T Consensus 84 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~-~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~a 160 (312)
T 2xwv_A 84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQT-TSNRAINSIADMKGLKLRVPNAA--TNLAYAKY 160 (312)
T ss_dssp TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-EESSCCCSGGGGTTCEEEECSCH--HHHHHHHH
T ss_pred CcccCCHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceee-ecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHH
Confidence 0 11111 111222 235788888777776654 34433 3667776 56654432 23568888
Q ss_pred cCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceE-EEEEee
Q 018090 235 LGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTR-FLILAR 296 (361)
Q Consensus 235 ~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TR-Flvl~r 296 (361)
+|+..++..- ++....+..+ .-.|+..+.......++.=+++.+......++- ++++++
T Consensus 161 lGa~pv~m~~-~Evy~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 161 VGASPTPMAF-SEVYLALQTN--AVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp HTCEEEECCG-GGHHHHHHTT--SSSEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred cCCeeeecCH-HHHHHHHHcC--CcceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 8987665533 2333333333 235666666655555665455555544444444 444444
No 62
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=70.07 E-value=22 Score=32.92 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=55.1
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC-C--C------CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhc--
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY-P--K------CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR-- 187 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f-~--~------~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~-- 187 (361)
..+|+|-.+-++..|.+...++ . + .+.+...+..+++.+|.+|++|.+++... ++..+.+
T Consensus 116 gk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~~ 186 (310)
T 3n5l_A 116 SLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELTQ 186 (310)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHC
T ss_pred CCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHhC
Confidence 3489986665555566655432 2 1 23456678899999999999999998632 3333322
Q ss_pred ----CCeEEEEEEEEeeeeEeeeCCCC
Q 018090 188 ----HRLHIVGEVQLVVNHCLLGLPGV 210 (361)
Q Consensus 188 ----~~L~IvgEi~lpI~h~Lla~~g~ 210 (361)
.+++++++...--.+.+++++|.
T Consensus 187 ~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 187 PEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp HHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred ccchhCEEEEEECCCCCCCcEEEECCC
Confidence 46888887654445778887774
No 63
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=69.82 E-value=57 Score=29.81 Aligned_cols=111 Identities=15% Similarity=-0.048 Sum_probs=76.1
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEe---eeeEeeeCCCCCccCccEEE
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLV---VNHCLLGLPGVLKEELKRVF 219 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lp---I~h~Lla~~g~~l~~Ik~Vy 219 (361)
.++.+...|+..+.+|.+|.+|++|+- ...+-..+.+.++.++-++--+ -.|.|+.+++ ....|++|-
T Consensus 46 ~~i~~mrg~~~RI~aL~~gk~D~aI~S--------~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~~ikrVG 116 (231)
T 2ozz_A 46 FYYAHMRGADIRVECLLNGVYDMAVVS--------RLAAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESGNVKRVG 116 (231)
T ss_dssp EEEEECSCHHHHHHHHHTTSCSEEEEE--------HHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGGGCCEEE
T ss_pred EEEEEccChHHHHHHHHcCCCCEEEEe--------cccchhhhcccCeEEEEEcCCCccccCeEEEEeCC-CccccEEEE
Confidence 578899999999999999999999974 2334444445566666555433 3466777665 335669999
Q ss_pred echHHHHHHHHHHHh-cCCeEEec-cCHHHHHHHHHhcCCCCeEEec
Q 018090 220 SHPQALAQCEMTLSN-LGIVRISA-DDTAGAAQMVASIGERDTGAVA 264 (361)
Q Consensus 220 SHPqALaQC~~fL~~-~~~~~i~~-~STA~AA~~va~~~~~~~AAIa 264 (361)
-.+-...|+.--=.. .+.++..+ .+.+++...+..+. -.|+|-
T Consensus 117 vd~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~--IDA~Iw 161 (231)
T 2ozz_A 117 LDSRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGD--VDAVIW 161 (231)
T ss_dssp ECTTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTS--CCEEEE
T ss_pred ecCCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCC--ccEEEE
Confidence 988888877421111 35555566 78888888888764 356666
No 64
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=69.36 E-value=22 Score=29.99 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=71.5
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEE--eeeeEeeeCCCC---CccCcc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL--VVNHCLLGLPGV---LKEELK 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l--pI~h~Lla~~g~---~l~~Ik 216 (361)
+.++++. ++.+++.++++|++|.++-.+- .+-+. ...+.. .-++ .....++++++. +++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r--~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMS--------ITPSR--LKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBB--------CCHHH--HTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCc--------CCHHH--Hhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 4678888 8999999999999998752221 12111 123333 4444 666777777653 344442
Q ss_pred --EEEechHHHHHHHHHHHhc-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHc
Q 018090 217 --RVFSHPQALAQCEMTLSNL-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (361)
Q Consensus 217 --~VySHPqALaQC~~fL~~~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 272 (361)
+|... ..... ..++.+. +.+++.+.+..++.+.+..+ .-.|+|+....+..+
T Consensus 118 g~~i~v~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQ-TGTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHG--KSPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEE-TTSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEE-cCcHH-HHHHHhCCCceEEEECCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 34322 22222 3345444 57888899999999999876 356888888777654
No 65
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=68.31 E-value=5.4 Score=35.97 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=28.5
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHHCCccccceee
Q 018090 308 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIES 341 (361)
Q Consensus 308 KtSi~f-~~~~~PGaL~~iL~~Fa~~~INLtkIES 341 (361)
-+.|.+ .++++||.+.++++.|+++|||.-.|-.
T Consensus 35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Q 69 (200)
T 4go7_X 35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQ 69 (200)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEC
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEee
Confidence 444444 5789999999999999999999999954
No 66
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=67.19 E-value=6 Score=34.32 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=27.4
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHHCCcccccee
Q 018090 308 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIE 340 (361)
Q Consensus 308 KtSi~f-~~~~~PGaL~~iL~~Fa~~~INLtkIE 340 (361)
-+.|.+ .++++||.+.++++.|+++|||+-.|-
T Consensus 15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~ 48 (178)
T 2dtj_A 15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVL 48 (178)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEE
Confidence 444544 368999999999999999999998874
No 67
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=66.23 E-value=49 Score=27.13 Aligned_cols=114 Identities=10% Similarity=-0.035 Sum_probs=67.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC----CccCcc-
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~~Ik- 216 (361)
+.++++. ++.++++++.+|++|+++-.+.-+ ...+ ..+.... -.......++++++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~------~~r~----~~~~~~~-p~~~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 42 DYELKPM-DFSGIIPALQTKNVDLALAGITIT------DERK----KAIDFSD-GYYKSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSEEEEEEECC------HHHH----TTSEECS-CCEEEEEEEEEETTCCSCSSSTTTTT
T ss_pred EEEEEEC-CHHHHHHHHhCCCCCEEEEcCcCC------HHHh----Ccccccc-chhcCceEEEEeCCCCCCCCHHHhCC
Confidence 4667776 789999999999999987544311 1111 1111111 122334556665543 344442
Q ss_pred -EEEechHHHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 -RVFSHPQALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 -~VySHPqALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|....- .. ...+|.+. +.+++.+.|..++.+++..+. -.|++.+...+..
T Consensus 110 ~~i~~~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 163 (226)
T 1wdn_A 110 KVVAVKSG-TG-SVDYAKANIKTKDLRQFPNIDNAYMELGTNR--ADAVLHDTPNILY 163 (226)
T ss_dssp CEEEEETT-SH-HHHHHHHHCCCSEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred CEEEEEcC-Cc-HHHHHHHhCCCceEEEeCCHHHHHHHHHcCC--cCEEEeCcHHHHH
Confidence 4544322 22 24566663 578888899999999998763 4577777766543
No 68
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=65.84 E-value=0.72 Score=44.19 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=29.9
Q ss_pred cCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 60 EDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
.=|+-|.|++++||++|+|.|++|+.|++++..+
T Consensus 240 ~iE~H~~pd~al~D~~~sl~p~el~~lv~~ir~i 273 (288)
T 3tml_A 240 FMETHPNPAEAKSDGPNAVPLNRMGALLETLVTL 273 (288)
T ss_dssp EEEEESSGGGCSSCGGGCEEGGGHHHHHHHHHHH
T ss_pred EEeeccChhhcCCchhhcCCHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999998665
No 69
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=65.68 E-value=53 Score=29.30 Aligned_cols=103 Identities=9% Similarity=-0.135 Sum_probs=60.4
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHH-hcCCeEEEEEEEEeeeeEeeeCCCC---CccCc--c
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LRHRLHIVGEVQLVVNHCLLGLPGV---LKEEL--K 216 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~I--k 216 (361)
+++++..+-.+.+++|.+|++|+++.... ..+... ...++.+++.....-...|+++++. +++|+ +
T Consensus 36 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk 107 (302)
T 3ix1_A 36 VDIVFPTNPTDPIQLTASGAIPLALSYQP--------DVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGL 107 (302)
T ss_dssp EEEECCSSTTHHHHHHHHTSCSEEEECHH--------HHHHHHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTS
T ss_pred EEEecCCCCchHHHHHHCCCCCEEecCHH--------HHHHHHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCC
Confidence 67788877779999999999999985321 112221 2346777777665545778887653 34555 3
Q ss_pred EEEechH--HHHHHHHHHHhcC-----CeEEeccCHHHHHHHHHhc
Q 018090 217 RVFSHPQ--ALAQCEMTLSNLG-----IVRISADDTAGAAQMVASI 255 (361)
Q Consensus 217 ~VySHPq--ALaQC~~fL~~~~-----~~~i~~~STA~AA~~va~~ 255 (361)
+|....- .....+.+|.+.+ ++.+.... .+...+..+
T Consensus 108 ~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~~~--~~~~al~~G 151 (302)
T 3ix1_A 108 TVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGF--ELGASIVSG 151 (302)
T ss_dssp EEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTT--CHHHHHHHS
T ss_pred EEEeCCCcchHHHHHHHHHHcCCCHHHeEEEecCc--cHHHHHhCC
Confidence 5544322 2233566777654 44555532 233444443
No 70
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=65.66 E-value=6.4 Score=37.10 Aligned_cols=83 Identities=14% Similarity=0.018 Sum_probs=54.5
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC-C--C-----CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh----
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY-P--K-----CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---- 186 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f-~--~-----~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~---- 186 (361)
..+|+|-.|-++..+.+...++ . + .+.++..+..+++.+|.+|++|.+++... ++..+.
T Consensus 126 gk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~---------~~~~~~~~~p 196 (321)
T 3p7i_A 126 DLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTE---------NLDKLKTSAP 196 (321)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHTHHHHCH
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechH---------HHHHHHHhCc
Confidence 3589987776665666665422 2 1 23467788999999999999999998622 333222
Q ss_pred --cCCeEEEEEEEEeeeeEeeeCCCC
Q 018090 187 --RHRLHIVGEVQLVVNHCLLGLPGV 210 (361)
Q Consensus 187 --~~~L~IvgEi~lpI~h~Lla~~g~ 210 (361)
..+++|+++...--.+.++++++.
T Consensus 197 ~~~~~lrvl~~s~~~p~~~i~~~k~~ 222 (321)
T 3p7i_A 197 EKLKELKVIWKSPLIPGDPIVWRKNL 222 (321)
T ss_dssp HHHTTEEEEEECSCBCCCEEEEETTS
T ss_pred chhccEEEEEEcCCCCCCceeeeCCC
Confidence 246888876543334667777664
No 71
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=65.66 E-value=0.73 Score=44.37 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=29.4
Q ss_pred cCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 60 EDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
.=|+-|.|++++||++|+|.|++|+.|++++..+
T Consensus 258 ~IE~H~tpd~al~D~~~sl~p~el~~lv~~ir~i 291 (298)
T 3fs2_A 258 FIETHEDPDNAPSDGPNMVPIDKMPALLEKLMAF 291 (298)
T ss_dssp EEEEESSGGGCSSSGGGCEEGGGHHHHHHHHHHH
T ss_pred EEEecCChhccCCchhhcCCHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999988544
No 72
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=64.98 E-value=16 Score=32.06 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=36.1
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHH--HHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAA--FKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eV--f~aV~~g~~d~gVVP 169 (361)
..+||+ +.|+..+....+ ++. +++.+++..++ +++|.+|++| +++.
T Consensus 132 g~~i~v--~~g~~~~~~l~~-~~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~ 179 (271)
T 2iee_A 132 GKKAAG--AATTVYMEVARK-YGA-KEVIYDNATNEQYLKDVANGRTD-VILN 179 (271)
T ss_dssp TCEEES--CTTSHHHHHHHH-TTC-EEEECSSCCHHHHHHHHHHTSSC-EEEE
T ss_pred CCEEEE--eCCccHHHHHHH-cCC-ceEEeCChhhHHHHHHHHcCCcc-EEec
Confidence 357887 478877766554 444 88899999999 9999999999 7764
No 73
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=64.62 E-value=30 Score=29.38 Aligned_cols=113 Identities=9% Similarity=0.009 Sum_probs=70.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCCCccCcc-EEEe
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELK-RVFS 220 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik-~VyS 220 (361)
+.++++. ++..++.++.+|++|.++-++-. |-+- +..+... .-++.....++++++. +++++ +|..
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------t~~r--~~~~~fs-~p~~~~~~~~~~~~~~-~~dL~g~igv 111 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSI--------TDER--DEVIDFT-QNYIPPTASSYVATSD-GADLSGIVAA 111 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTSEEE-EEEECCCEEEEEESST-TCCTTSEEEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcC--------CHHH--HhhcCcc-cccccCCeEEEEECCC-hHHhCCCEEE
Confidence 4677775 89999999999999976643321 2111 1223333 3355566777777653 33332 3332
Q ss_pred chHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 221 HPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 221 HPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
-. ... -..+|.+.+++++.+.|..++.+++..+ .-.|+|+....+..
T Consensus 112 ~~-g~~-~~~~l~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 158 (232)
T 3i6v_A 112 QT-ATI-QAGYIAESGATLVEFATPEETIAAVRNG--EADAVFADRDYLVP 158 (232)
T ss_dssp ET-TSH-HHHHHHHSSSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred ec-Cch-HHHHHHhcCCeEEEeCCHHHHHHHHHcC--CcCEEEEChHHHHH
Confidence 21 212 2446666688889999999999999876 35678877776643
No 74
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=63.61 E-value=82 Score=28.14 Aligned_cols=138 Identities=17% Similarity=0.052 Sum_probs=81.2
Q ss_pred CccEEEEeCCCCcHH---HHHHHH-HCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-cC
Q 018090 118 TKVRVAYQGLPGAYS---EAAARK-AYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RH 188 (361)
Q Consensus 118 ~~~rIAyLGP~GTyS---e~AA~~-~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~ 188 (361)
.+.+|.+-+..|++. ..|..+ +|. ++++++..+..+++++|.+|++|+++.+.. .++.... ..
T Consensus 33 ~~~~i~~~~~~~~~~~~~~~a~~~g~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~--------~~~~~~~~~~ 104 (346)
T 3qsl_A 33 AKVQIAVGGKPLIYYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFE--------HTLSLQAKGQ 104 (346)
T ss_dssp SEEEEEESCTTSGGGHHHHHHHHTTHHHHTTCEEEEEECSSHHHHHHHHHTTSCSEEEEETH--------HHHHHHHTTC
T ss_pred CceEEEecCccchhhhHHHHHHHCCchHhhCCeEEEEecCChHHHHHHHHCCCCCEEccchH--------HHHHHHhCCC
Confidence 456676666655443 222221 232 367888899999999999999999987543 2333222 34
Q ss_pred CeEEEEEEEEeeeeEeeeCCCC-----CccCcc--EEEec-hH--HHHHHHHHHHhcC-----CeEEeccCHHHHHHHHH
Q 018090 189 RLHIVGEVQLVVNHCLLGLPGV-----LKEELK--RVFSH-PQ--ALAQCEMTLSNLG-----IVRISADDTAGAAQMVA 253 (361)
Q Consensus 189 ~L~IvgEi~lpI~h~Lla~~g~-----~l~~Ik--~VySH-Pq--ALaQC~~fL~~~~-----~~~i~~~STA~AA~~va 253 (361)
++.+++.....-...++++++. +++|++ +|... +- .....+.+|++.+ ++++...+.+++...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~ 184 (346)
T 3qsl_A 105 FYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALR 184 (346)
T ss_dssp CEEEEEESBSSCCEEEEEETTTCTTCCSGGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHH
T ss_pred CeEEEEecccCCCcEEEEecCcccCCCChHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHH
Confidence 5666665444334566666532 455553 66554 22 1334467777764 45677777777777777
Q ss_pred hcCCCCeEEecC
Q 018090 254 SIGERDTGAVAS 265 (361)
Q Consensus 254 ~~~~~~~AAIas 265 (361)
.+. -.|++..
T Consensus 185 ~G~--vDa~~~~ 194 (346)
T 3qsl_A 185 SGQ--IDAISNT 194 (346)
T ss_dssp HTS--CSEEEEE
T ss_pred cCC--ccEEEec
Confidence 653 2344443
No 75
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=63.35 E-value=0.72 Score=44.13 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=29.9
Q ss_pred cCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 60 EDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
.=|+-|.|++++||++|+|.|++|+.|++++..+
T Consensus 239 ~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~~i 272 (285)
T 3sz8_A 239 FLEAHPDPDRARCDGPSALPLHQLEGLLSQMKAI 272 (285)
T ss_dssp EEEEESCGGGCSCSSCCCEEGGGHHHHHHHHHHH
T ss_pred EEEeccChhccCCchhhccCHHHHHHHHHHHHHH
Confidence 3456689999999999999999999999998665
No 76
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=62.78 E-value=84 Score=29.62 Aligned_cols=121 Identities=12% Similarity=-0.078 Sum_probs=72.3
Q ss_pred CccEEEEeCCCC-cHHHHHHHHHC--------CCCceeecC-----CHHHHHHHHHcCCcCeEEEeeeccc--------c
Q 018090 118 TKVRVAYQGLPG-AYSEAAARKAY--------PKCETVPCD-----QFEAAFKAVELWLVDKAVLPIENSV--------G 175 (361)
Q Consensus 118 ~~~rIAyLGP~G-TySe~AA~~~f--------~~~e~vp~~-----sf~eVf~aV~~g~~d~gVVPIENS~--------~ 175 (361)
...|+++..|+| +..+.++..+. ++.++..+. +..+++++|..|.+|++++..-... .
T Consensus 32 ~~l~~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~ 111 (365)
T 2hzl_A 32 VTWRLASSFPKSLDTIFGGAEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALA 111 (365)
T ss_dssp CEEEEEESSCTTCTTTTHHHHHHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHT
T ss_pred eEEEEeccCCCCCCchhHHHHHHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhcccChhHhhh
Confidence 468999999988 54455554431 235665555 3589999999999999998742210 0
Q ss_pred cchH------------------HhHH-HHhcCCeEEEEEEEEeeeeEeeeCCC-CCccCcc--EEEechHHHHHHHHHHH
Q 018090 176 GSIH------------------RNYD-LLLRHRLHIVGEVQLVVNHCLLGLPG-VLKEELK--RVFSHPQALAQCEMTLS 233 (361)
Q Consensus 176 G~V~------------------~tlD-lL~~~~L~IvgEi~lpI~h~Lla~~g-~~l~~Ik--~VySHPqALaQC~~fL~ 233 (361)
+.+. +.++ ++.+.++++.+-......+....++. .+++|++ +|..-+ --.++++
T Consensus 112 ~~lPf~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~~pI~s~~DLkG~KiR~~~----~~~~~~~ 187 (365)
T 2hzl_A 112 AAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQMGGWFRREINTVADMQGLKMRVGG----FAGKVME 187 (365)
T ss_dssp TCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSBCCCEESSCCCSTGGGTTCEEECCT----THHHHHH
T ss_pred hcCCCCCCHHHHHHHHHcCChHHHHHHHHHHCCCEEEeccCCCcccceeecCCCCChHHhCCCEEecCC----cHHHHHH
Confidence 1000 0111 12345788877655554433323333 3677776 666553 2356788
Q ss_pred hcCCeEEec
Q 018090 234 NLGIVRISA 242 (361)
Q Consensus 234 ~~~~~~i~~ 242 (361)
.+|+..++.
T Consensus 188 ~lGa~pv~~ 196 (365)
T 2hzl_A 188 RLGVVPQQI 196 (365)
T ss_dssp TTTCEEECC
T ss_pred HcCCcceec
Confidence 888876654
No 77
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=62.56 E-value=13 Score=31.57 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=69.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik-- 216 (361)
+.++++. ++.++++++.+|++|.++.++--+-+.. ..+... .-++.....++++++. +++|++
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~----------~~~~fs-~p~~~~~~~~~~~~~~~~~~~~dL~g~ 111 (237)
T 3kzg_A 44 TCTFEAY-IFDDLFPALKNREVDLVIASMIITDERK----------KHFIFS-LPYMESNSQYITTVDSKISTFDDLHGK 111 (237)
T ss_dssp EEEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGG----------GTCEEC-CCSBCCEEEEEEETTCSCCSGGGGTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHh----------ccceee-eeeeecceEEEEECCCCCCCHHHhCCC
Confidence 3677887 7899999999999998764433222110 011111 1223344566666653 344442
Q ss_pred EEEechHHHHHHHHHHHhc-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHc
Q 018090 217 RVFSHPQALAQCEMTLSNL-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 272 (361)
+|... ..-.....+++.. +.+++.+.|..++.+++..+ .-.|+|.....+..+
T Consensus 112 ~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 112 KIGVR-KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNN--QVDASLMDYEAAKYW 165 (237)
T ss_dssp EEEEE-TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHHH
T ss_pred EEEEe-cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcC--CCCEEEeCcHHHHHH
Confidence 44332 2333334444444 47888999999999999876 346777777766543
No 78
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=62.21 E-value=57 Score=26.83 Aligned_cols=137 Identities=10% Similarity=-0.034 Sum_probs=73.1
Q ss_pred CCCccEEEEeCCCCcH-HHHHHH---HHCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCe
Q 018090 116 DGTKVRVAYQGLPGAY-SEAAAR---KAYPKCETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTy-Se~AA~---~~f~~~e~vp-~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L 190 (361)
..+..+||+...-+.+ --.... +.+|+.++.. ..+..++.+.+.+|++|+|++.-.... .+
T Consensus 9 ~~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~-------------~~- 74 (232)
T 3ho7_A 9 LTGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAET-------------EG- 74 (232)
T ss_dssp -CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCC-------------TT-
T ss_pred cceeEEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCC-------------CC-
Confidence 3455777776544332 111112 2357765433 345789999999999999998643111 11
Q ss_pred EEEEEEEEeeeeEeeeCCC--------CCccCcc---EEEechH--HHHHHHHHHHhcCC----eEEeccCHHHHHHHHH
Q 018090 191 HIVGEVQLVVNHCLLGLPG--------VLKEELK---RVFSHPQ--ALAQCEMTLSNLGI----VRISADDTAGAAQMVA 253 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~g--------~~l~~Ik---~VySHPq--ALaQC~~fL~~~~~----~~i~~~STA~AA~~va 253 (361)
+..+.......++++.++ .+++++. -|...+. ...+..+++.+.+. ....++|...+.++|+
T Consensus 75 -l~~~~l~~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 153 (232)
T 3ho7_A 75 -LEDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVE 153 (232)
T ss_dssp -EEEEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHH
T ss_pred -eEEEEecccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHH
Confidence 223333344455555443 2333332 2222111 12345566665443 2466777777777777
Q ss_pred hcCCCCeEEecCHhhHH
Q 018090 254 SIGERDTGAVASAQAAE 270 (361)
Q Consensus 254 ~~~~~~~AAIas~~AA~ 270 (361)
.+ ...+|.+...+.
T Consensus 154 ~g---~gi~~~p~~~~~ 167 (232)
T 3ho7_A 154 SG---QGITFIPQLTVE 167 (232)
T ss_dssp TT---CCEEEEEGGGGG
T ss_pred cC---CcEEEecHHHhh
Confidence 64 346777777665
No 79
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=61.18 E-value=0.78 Score=43.03 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=31.1
Q ss_pred cccccCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 56 ITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 56 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
+.-+-=|+-+.|+++++|++|+|.|++|+.|++++..+
T Consensus 221 a~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~~~ 258 (262)
T 1zco_A 221 ADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELEAL 258 (262)
T ss_dssp CSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHHHT
T ss_pred CCEEEEEecCCccccCChhhcCCCHHHHHHHHHHHHHH
Confidence 33335567789999999999999999999999887443
No 80
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=61.04 E-value=11 Score=34.01 Aligned_cols=49 Identities=8% Similarity=-0.000 Sum_probs=39.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHC---C----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f---~----~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+|++.|+ ||-++.....++ + +.+++++.+..+++.++.+|++|.++++
T Consensus 139 k~i~~~~~-gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 139 RKIGVTAP-GSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp CEEEESST-TSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CEEEECCC-CcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 58999875 777777665543 2 3578899999999999999999999985
No 81
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=60.44 E-value=0.89 Score=43.09 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=28.9
Q ss_pred cCCCCCCCcccchhhhhcccccccccccccCCc
Q 018090 60 EDDRPYTPDVQSSEANERSQDSQSSGFHKDLNL 92 (361)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~ 92 (361)
.=|+-+.|+++++|++|+|.|++|+.|++++..
T Consensus 240 ~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~i~~ 272 (276)
T 1vs1_A 240 IVEVHPNPEEALSDAKQQLTPGEFARLMGELRW 272 (276)
T ss_dssp EEEBCSSGGGCSSCGGGCBCHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCchhcCCCHHHHHHHHHHHHH
Confidence 445778999999999999999999999988743
No 82
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=59.36 E-value=32 Score=31.14 Aligned_cols=161 Identities=11% Similarity=0.081 Sum_probs=82.2
Q ss_pred CccEEEEeCCCCcHH--HHHHHHHCC----CCceee-cCCHHHHHHHHHcCCcCeEEEeeec---ccccc-------hHH
Q 018090 118 TKVRVAYQGLPGAYS--EAAARKAYP----KCETVP-CDQFEAAFKAVELWLVDKAVLPIEN---SVGGS-------IHR 180 (361)
Q Consensus 118 ~~~rIAyLGP~GTyS--e~AA~~~f~----~~e~vp-~~sf~eVf~aV~~g~~d~gVVPIEN---S~~G~-------V~~ 180 (361)
..++||+.+-.+.+- +.+ ..++. ++++++ ..+-..+++++.+|++|+++-=.-+ +..+. -.+
T Consensus 6 ~~i~ig~~~~~~~~~~~~~~-~~~le~~G~~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~ 84 (275)
T 1sw5_A 6 ERVVIGSKPFNEQYILANMI-AILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQY 84 (275)
T ss_dssp CCEEECCCSSHHHHHHHHHH-HHHHHHTTCCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHH
T ss_pred CCEEEEcCCCcHHHHHHHHH-HHHHHHcCCcEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHH
Confidence 357788864322221 111 12332 356666 6678899999999999988510000 01111 111
Q ss_pred hHHHHh-----cCCeEEEEEEEEeeeeEeeeCC------CC-CccCcc------EEEechHHHH---HHHHHHHhcCC--
Q 018090 181 NYDLLL-----RHRLHIVGEVQLVVNHCLLGLP------GV-LKEELK------RVFSHPQALA---QCEMTLSNLGI-- 237 (361)
Q Consensus 181 tlDlL~-----~~~L~IvgEi~lpI~h~Lla~~------g~-~l~~Ik------~VySHPqALa---QC~~fL~~~~~-- 237 (361)
.++.+. +.++.+.+-....-.+.|++++ |. +++|++ ++-+-+.-.. .-..+++.+++
T Consensus 85 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~ 164 (275)
T 1sw5_A 85 IFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEF 164 (275)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhcCCeEEeccCCCCCeeEEEEeHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCc
Confidence 333322 2478888887666668888765 32 344543 2222222111 11225665553
Q ss_pred eEEeccCHHHHHHHHHhcCCCCeEEecCHh-hHHHcCCceeecc
Q 018090 238 VRISADDTAGAAQMVASIGERDTGAVASAQ-AAEIYGLDILAEK 280 (361)
Q Consensus 238 ~~i~~~STA~AA~~va~~~~~~~AAIas~~-AA~~YgL~iLa~~ 280 (361)
+.+..-+.+.+...+.++ ..+.+.+-+.. ....|+|.+|..+
T Consensus 165 ~~~~~~~~~~~~~Al~~g-~vd~~~~~~p~~~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 165 KEVKQMEPTLMYEAIKNK-QVDVIPAYTTDSRVDLFNLKILEDD 207 (275)
T ss_dssp SEEEECCGGGHHHHHHTT-SCSEEEEETTCHHHHHTTEEECBCT
T ss_pred ccccCCCHHHHHHHHHcC-CCeEEEEeCCCcchhcCCeEEccCC
Confidence 222233455545555544 35555553333 3456899988754
No 83
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=59.06 E-value=40 Score=29.00 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=50.9
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC---C-CCc-eeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-c--CCe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY---P-KCE-TVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-R--HRL 190 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f---~-~~e-~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~--~~L 190 (361)
..+|+.+ .|+..+.....+. + ..+ .+...+..+++++|.+|++|..+.. ..+++.+. + ..+
T Consensus 118 g~~v~v~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~---------~~~~~~~~~~~~~~~ 186 (243)
T 4gvo_A 118 GKRVITS--ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIST---------PFAVDFQNKTSAIKE 186 (243)
T ss_dssp TCEEEEC--TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEEC---------HHHHHHHHHTCSSCE
T ss_pred CCeEEEe--cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEcc---------HHHHHHHHhhCCCce
Confidence 3578876 4776666655432 2 233 3467889999999999999976531 12333333 2 247
Q ss_pred EEEEEEEEeeeeEeeeCCC
Q 018090 191 HIVGEVQLVVNHCLLGLPG 209 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~g 209 (361)
.++++..-+...+++.+++
T Consensus 187 ~~~~~~~~~~~~~~~~~k~ 205 (243)
T 4gvo_A 187 KVVGDVLSNAKVYFMLGKD 205 (243)
T ss_dssp EEEEEEEECCEECCEECTT
T ss_pred EEeccCCCCCcEEEEEeCC
Confidence 7888877776666666654
No 84
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=58.65 E-value=1.1e+02 Score=27.83 Aligned_cols=131 Identities=15% Similarity=-0.005 Sum_probs=73.3
Q ss_pred CCccEEEEeCCCCcHHHHHHHH--HCC----CCceeecCCHH-HHHHHHHcCCcCeEEEeeecccccchHHhHHHH-hcC
Q 018090 117 GTKVRVAYQGLPGAYSEAAARK--AYP----KCETVPCDQFE-AAFKAVELWLVDKAVLPIENSVGGSIHRNYDLL-LRH 188 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~AA~~--~f~----~~e~vp~~sf~-eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~~ 188 (361)
..+++|+|+.-.+...-..|.. +|. +++++.+.+-. .++++|.+|++|+++.... ..+... ...
T Consensus 14 ~~~l~ig~~~~~~~~p~~~A~~~G~~~~~Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~ 85 (321)
T 2x7q_A 14 LPTLKVAYIPEHFSTPLFFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTE--------AFIADIAKGN 85 (321)
T ss_dssp CCCEEEEECCSGGGHHHHHHHHTTHHHHTTCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHTTC
T ss_pred CceEEEEeeCCccchHHHHHHHCCcHHHCCceEEEEECCCCHHHHHHHHHcCCccEEecCcH--------HHHHHHHCCC
Confidence 3457899985443332333333 442 35677776644 5899999999999986432 122222 223
Q ss_pred C-eEEEEEEEE-eeeeEeeeCCCC----CccCccEEEech-HHHH-HHHHHH-HhcC----CeEEeccCHHHHHHHHHhc
Q 018090 189 R-LHIVGEVQL-VVNHCLLGLPGV----LKEELKRVFSHP-QALA-QCEMTL-SNLG----IVRISADDTAGAAQMVASI 255 (361)
Q Consensus 189 ~-L~IvgEi~l-pI~h~Lla~~g~----~l~~Ik~VySHP-qALa-QC~~fL-~~~~----~~~i~~~STA~AA~~va~~ 255 (361)
+ +.+++-+.- |....|+++++. +++|+|+|..-. -.-. ....+| .+.+ ++++.+.+.+++...+..+
T Consensus 86 ~~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DLK~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G 165 (321)
T 2x7q_A 86 ENIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQLKRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLK 165 (321)
T ss_dssp TTEEEEEEEECSCCEEEEEEESSCTTCSSGGGCCEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTC
T ss_pred CcEEEEEEecCCCcceEEEECCCCCCCCChHHcceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcC
Confidence 5 887776542 222457665432 455667776553 1111 123344 3444 3566776777777766654
No 85
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=58.44 E-value=1.2 Score=43.62 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=29.9
Q ss_pred cCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 60 EDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
.=|+-+.|+++++|++|+|.|++|+.|++++..+
T Consensus 308 ~IE~H~~pd~al~D~~~sL~p~e~~~lv~~ir~i 341 (350)
T 1vr6_A 308 IVEVHPEPEKALSDGKQSLDFELFKELVQEMKKL 341 (350)
T ss_dssp EEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCchhhcCCHHHHHHHHHHHHHH
Confidence 4457789999999999999999999999988554
No 86
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=58.36 E-value=15 Score=32.62 Aligned_cols=50 Identities=22% Similarity=0.085 Sum_probs=39.3
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEee
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPI 170 (361)
.+|||+. ..||.++...+.++.+.+++.. ++.++..++.+|++|.+++.-
T Consensus 103 GK~Iav~-~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ 152 (280)
T 1zbm_A 103 GKRIAVP-GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIH 152 (280)
T ss_dssp TCEEEES-CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECS
T ss_pred CCEEEec-CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEec
Confidence 3689997 4578888777777777777665 678999999999999988753
No 87
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=58.30 E-value=75 Score=25.97 Aligned_cols=114 Identities=9% Similarity=0.015 Sum_probs=67.3
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-cCCeEEEEEEEEeeeeEeeeCCC-------CCcc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLHIVGEVQLVVNHCLLGLPG-------VLKE 213 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~~L~IvgEi~lpI~h~Lla~~g-------~~l~ 213 (361)
+.++++.+++.++++++.+|++|.++-++.-+ .+....+. ...+. .....++++++ .+++
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~-----~~r~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISIT-----AEREQNFDFSLPIF-------ASGLQIMVRNLESGTGDIRSID 108 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCC-----HHHHHHSEECSCSE-------EEEEEEEEEC-----CCCCSGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccC-----HHHHccceecccch-------hcceEEEEECCccccCCcCCHH
Confidence 46888998999999999999999886322110 11111111 11221 22234444432 1344
Q ss_pred Ccc--EEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 214 ELK--RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 214 ~Ik--~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
|++ +|....-. . -..+|.+.++..+.+.|..++.+++..+ .-.|+|.+...+..
T Consensus 109 dL~g~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~~~~~~ 164 (228)
T 2pyy_A 109 DLPGKVVATTAGS-T-AATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDAPVLLF 164 (228)
T ss_dssp GCTTCEEEEETTS-H-HHHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred HcCCCeEEEEcCc-H-HHHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecHHHHHH
Confidence 442 44432221 1 3467777788888899999999999875 34577777766543
No 88
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=57.65 E-value=1.1 Score=42.39 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=15.3
Q ss_pred ccCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 59 VEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
+.=|+-+.|+++++|++|++.|++|+.|++++..+
T Consensus 233 ~~IE~H~~~d~al~D~~~sl~p~~l~~lv~~i~~~ 267 (280)
T 2qkf_A 233 LFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKAL 267 (280)
T ss_dssp EEEEC----------------CCHHHHHHHHHHHH
T ss_pred EEEeecCCcccCCCccccCCCHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999998655
No 89
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=56.69 E-value=17 Score=33.99 Aligned_cols=50 Identities=22% Similarity=0.075 Sum_probs=39.6
Q ss_pred cEEEEeCCCCcHHHHHHHHHCC----C---CceeecCCHHHHHHHHHcCCcCeEEEee
Q 018090 120 VRVAYQGLPGAYSEAAARKAYP----K---CETVPCDQFEAAFKAVELWLVDKAVLPI 170 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~----~---~e~vp~~sf~eVf~aV~~g~~d~gVVPI 170 (361)
.+|+| |..||-+|.++..++. + ...+++.+..+++.++..|++|..+...
T Consensus 147 k~v~~-~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 147 KRVNI-GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp SEEEC-CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CEEec-CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 47886 6779989988776542 1 2458999999999999999999988743
No 90
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=56.56 E-value=8 Score=33.86 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=25.3
Q ss_pred EecCCcchHHHHHHHHHHCCcccccee
Q 018090 314 TLEEGPGMLFKALAVFALRDINLTKIE 340 (361)
Q Consensus 314 ~~~~~PGaL~~iL~~Fa~~~INLtkIE 340 (361)
.++++||.+.++++.|+++|||.-.|.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 578999999999999999999999996
No 91
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=56.43 E-value=37 Score=31.75 Aligned_cols=88 Identities=9% Similarity=-0.025 Sum_probs=57.2
Q ss_pred CccEEEEeCCCCcHHHHHHHHHCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh----cCC
Q 018090 118 TKVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL----RHR 189 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA~~~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~----~~~ 189 (361)
...||||.+|.... ..++.++|. +++++.+.+..+..+|+.+|++|++..-. ...++... ..+
T Consensus 39 ~~i~IG~~~~~~~~-~~~~~~~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~--------~~~l~~~~~~~~g~~ 109 (295)
T 1p99_A 39 KKVTIGVASNDTKA-WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQH--------FAFLDQYKKAHKGTK 109 (295)
T ss_dssp -CEEEEESSSCCHH-HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEE--------HHHHHHHHHHCTTCC
T ss_pred CeEEEEEeCCcHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccCC--------HHHHHHHHHhcCCCC
Confidence 45899999765533 444555664 36899999999999999999999987421 23344432 246
Q ss_pred eEEEEEEEEeeeeEeeeCCCCCccCc
Q 018090 190 LHIVGEVQLVVNHCLLGLPGVLKEEL 215 (361)
Q Consensus 190 L~IvgEi~lpI~h~Lla~~g~~l~~I 215 (361)
+.+++.+...- ..+...+=.+++|+
T Consensus 110 l~~v~~~~~~p-~g~ys~~iksl~DL 134 (295)
T 1p99_A 110 ISALSTTVLAP-LGIYSDKIKDVKKV 134 (295)
T ss_dssp EEEEEEEEECC-CEEECSSCSCGGGC
T ss_pred EEEEEeecccc-ceeecCCCCChHHc
Confidence 88887664432 34444433466777
No 92
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=56.39 E-value=97 Score=26.63 Aligned_cols=116 Identities=11% Similarity=-0.054 Sum_probs=63.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCC-----CCccCcc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG-----VLKEELK 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g-----~~l~~Ik 216 (361)
+.++++. ++.++++++.+|++|.++-.+-.+- .-. ..+... +-++.....++++++ .+++|++
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~------~r~----~~~~fs-~p~~~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSGISITD------KRK----KVIDFS-EPYYINSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEEEECCH------HHH----TTEEEC-CCSEEEEEEEEEETTSCCCCCSGGGGG
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEECCcCCH------HHh----hccccc-cchhhCceEEEEEcCCCCCCCCHHHhC
Confidence 4678888 8999999999999999775543221 111 111111 112223344544332 1344442
Q ss_pred --EEEechH--HHHHHHHHHHhcC----CeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 --RVFSHPQ--ALAQCEMTLSNLG----IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 --~VySHPq--ALaQC~~fL~~~~----~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|....- ....-++.+...+ .+++.+.|..++.+.+..+. -.|++.....+..
T Consensus 137 g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 197 (259)
T 4dz1_A 137 KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGN--LDLAFIEEPVYFT 197 (259)
T ss_dssp GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 3433221 1122223333323 56788889999999998763 4677777766543
No 93
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=56.13 E-value=1.3e+02 Score=27.99 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=76.4
Q ss_pred CCCCCccEEEEeCCCCcHHHHHH----HHH----CC-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHH
Q 018090 114 PDDGTKVRVAYQGLPGAYSEAAA----RKA----YP-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL 184 (361)
Q Consensus 114 ~~~~~~~rIAyLGP~GTySe~AA----~~~----f~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDl 184 (361)
.......+||++.-.....-... .++ .+ ++++++..++.++++++.+|++|++++. .. .....
T Consensus 10 ~~~~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~lG~~ve~~~~~~~~~~i~aL~~G~vDia~~~-------~~-~~~~~ 81 (321)
T 3p7i_A 10 EEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYG-------NL-SAMEA 81 (321)
T ss_dssp ----CCEEEEECCSSCHHHHHHHHHHHHHHHHHHHTSCEEEECCSSHHHHHHHHHTTSCSEEECC-------HH-HHHHH
T ss_pred hhcCCcEEEEEecCCCHHHHHHHHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHcCCCcEEEEC-------hH-HHHHH
Confidence 34556788999976655433221 111 12 4678888999999999999999999852 11 11222
Q ss_pred HhcCCeEEEEEEE----Eee-eeEeeeCCCC---CccCc----c--EEE-echHHH---HHHHHHH-HhcC-----CeEE
Q 018090 185 LLRHRLHIVGEVQ----LVV-NHCLLGLPGV---LKEEL----K--RVF-SHPQAL---AQCEMTL-SNLG-----IVRI 240 (361)
Q Consensus 185 L~~~~L~IvgEi~----lpI-~h~Lla~~g~---~l~~I----k--~Vy-SHPqAL---aQC~~fL-~~~~-----~~~i 240 (361)
..+.+..++.... -|- ...|+++++. +++|+ + +|. ..+-.. --...+| .+.+ ++.+
T Consensus 82 ~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v 161 (321)
T 3p7i_A 82 VDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRT 161 (321)
T ss_dssp HHHSCEEEEEEEEETTCCSSBCEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEE
T ss_pred HHhcCCEEEEEEeccCCCcceEEEEEEECCCCCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceee
Confidence 2234544443221 111 1356666654 44555 3 343 233221 1112223 4444 3345
Q ss_pred eccCHHHHHHHHHhcCCCCeEEecCHhhH
Q 018090 241 SADDTAGAAQMVASIGERDTGAVASAQAA 269 (361)
Q Consensus 241 ~~~STA~AA~~va~~~~~~~AAIas~~AA 269 (361)
+..+...++..+..+. -.|++.....+
T Consensus 162 ~~~~~~~a~~al~~G~--vDa~~~~~~~~ 188 (321)
T 3p7i_A 162 VNAGHETNALAVANKQ--VDVATNNTENL 188 (321)
T ss_dssp EECCHHHHHHHHHTTS--SSEEEEEHHHH
T ss_pred ecCCHHHHHHHHHCCC--ceEEEechHHH
Confidence 6666777888887653 34555554443
No 94
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=55.86 E-value=6.7 Score=33.46 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=27.8
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHHCCccccceee
Q 018090 308 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIES 341 (361)
Q Consensus 308 KtSi~f-~~~~~PGaL~~iL~~Fa~~~INLtkIES 341 (361)
-+.|.+ .++++||.+.++++.|+++|||.-.|-.
T Consensus 16 ~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q 50 (167)
T 2dt9_A 16 HAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQ 50 (167)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEB
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 344443 3579999999999999999999999865
No 95
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=55.63 E-value=1.2 Score=42.46 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=30.7
Q ss_pred ccCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 59 VEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 59 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
+.=|+-+.|+++++|++|+|.|++|+.|++++..+
T Consensus 236 l~IE~H~~~d~al~Dg~~sl~p~~l~~lv~~ir~i 270 (292)
T 1o60_A 236 LFLEAHPNPNQAKCDGPSALPLSALEGFVSQMKAI 270 (292)
T ss_dssp EEEEEESSGGGCSSCCTTCEEGGGHHHHHHHHHHH
T ss_pred EEEEecCCcccCCchhhcCCCHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999998655
No 96
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=55.26 E-value=1.2e+02 Score=28.06 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=78.5
Q ss_pred CCccEEEEeCCCCcHHHHHH---H---HH-C--CC--CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHH-
Q 018090 117 GTKVRVAYQGLPGAYSEAAA---R---KA-Y--PK--CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL- 184 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~AA---~---~~-f--~~--~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDl- 184 (361)
.+.++|+.-+|-|+|--.+. . +. + .+ +++.+...-.+.+.+|.+|++|++++... .+...+.-
T Consensus 31 ~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~-----~~~~a~~g~ 105 (327)
T 4ddd_A 31 REYILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSD-----LEYYAYNGL 105 (327)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHH-----HHHHHHHTC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcH-----HHHHHHhCc
Confidence 45678888878788743221 1 11 1 22 45666677889999999999999997532 11111110
Q ss_pred --Hh----cCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--EEEe-chH--HHHHHHHHHHhcCC-----eEEeccCH
Q 018090 185 --LL----RHRLHIVGEVQLVVNHCLLGLPGV---LKEELK--RVFS-HPQ--ALAQCEMTLSNLGI-----VRISADDT 245 (361)
Q Consensus 185 --L~----~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik--~VyS-HPq--ALaQC~~fL~~~~~-----~~i~~~ST 245 (361)
+. ..++..++-+.- -...|+++++. +++|++ +|.- .+- .....+.++++.++ ..+...+.
T Consensus 106 ~~f~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~ 184 (327)
T 4ddd_A 106 GFYEKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKS 184 (327)
T ss_dssp GGGTTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGGTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCH
T ss_pred CcccccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHhCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCH
Confidence 11 135777776553 44567776653 344543 4432 221 12334567766554 35777888
Q ss_pred HHHHHHHHhcC
Q 018090 246 AGAAQMVASIG 256 (361)
Q Consensus 246 A~AA~~va~~~ 256 (361)
+++...+..++
T Consensus 185 ~~a~~aL~~G~ 195 (327)
T 4ddd_A 185 SEQAQALCDNK 195 (327)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHcCC
Confidence 89888888764
No 97
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=54.67 E-value=37 Score=28.96 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=68.3
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCC--C---CccCcc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG--V---LKEELK 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g--~---~l~~Ik 216 (361)
+.++++. ++.++++++.+|++|.++.++.. +-+. ...+.. ..-.......++++++ . +++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------~~~r--~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSK--------TDER--SKVFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBC--------CHHH--HTTEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcC--------CHhH--hhceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 4678888 99999999999999987643221 1111 111111 1123344455666554 2 344543
Q ss_pred --EEEechHHHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 --RVFSHPQALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 --~VySHPqALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|....-.. ...++.+. +..++.+.|..++.+.+..+ .-.|++.....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSG--QVDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcC--CCCEEEeChHHHHH
Confidence 444332221 24556553 47888899999999999876 35677777766543
No 98
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=54.56 E-value=1.3e+02 Score=27.71 Aligned_cols=205 Identities=10% Similarity=-0.016 Sum_probs=106.9
Q ss_pred CCCccEEEEeCCCCcHH--HHHHHHHC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-cC
Q 018090 116 DGTKVRVAYQGLPGAYS--EAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RH 188 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTyS--e~AA~~~f---~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~ 188 (361)
....++|++..-....- +.++ ..+ + +++.++.-+-..+++++.+|++|+.+--.-+. -...|+... +.
T Consensus 6 ~~~~I~ig~~~~~e~~~~~~i~~-~~Le~~Gy~Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~----~~~~~~~~~~~~ 80 (309)
T 1r9l_A 6 KGITVNPVQSTITEETFQTLLVS-RALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPL----HDNMYEAAGGDK 80 (309)
T ss_dssp TTCEECEEECSCGGGHHHHHHHH-HHHHHTTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETT----THHHHHHTTGGG
T ss_pred CCceEEEeecCccHHHHHHHHHH-HHHHHcCCCeEEeecCchHHHHHHHhcCCceEEeccccCc----cHHHHHHhhcCC
Confidence 44568899886333221 2222 222 2 25555545778899999999999886322222 234555443 24
Q ss_pred CeEEEEEEEEeeeeEeeeCC------C-CCccCcc----------------EEEechHHHH---HHHHHHHhcCCe--EE
Q 018090 189 RLHIVGEVQLVVNHCLLGLP------G-VLKEELK----------------RVFSHPQALA---QCEMTLSNLGIV--RI 240 (361)
Q Consensus 189 ~L~IvgEi~lpI~h~Lla~~------g-~~l~~Ik----------------~VySHPqALa---QC~~fL~~~~~~--~i 240 (361)
++...+.....-.+.|++++ + .+++|++ +++.-|.... .-...|+.++.. +.
T Consensus 81 ~l~~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~ 160 (309)
T 1r9l_A 81 KFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVT 160 (309)
T ss_dssp TEEECSCSEEEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEE
T ss_pred cEEEecccCCCceEEEEEchhhhhhcCCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceE
Confidence 67777765555567777755 3 2577786 6665553322 224466666643 44
Q ss_pred eccCHHH----HHHHHHhcCCCCeEEe-cCHhhHHHc----CCceeecccc--CCCCCceEEEEEeeCCCCCCCCCCceE
Q 018090 241 SADDTAG----AAQMVASIGERDTGAV-ASAQAAEIY----GLDILAEKIQ--DDDDNVTRFLILAREPIIAGTDRPYKT 309 (361)
Q Consensus 241 ~~~STA~----AA~~va~~~~~~~AAI-as~~AA~~Y----gL~iLa~~Iq--D~~~N~TRFlvl~r~~~~~~~~~~~Kt 309 (361)
.+.++.. ++....+.+....+.+ .+--....| +|.+|...-. +...+..+ +|...... .-..+..
T Consensus 161 ~~~~s~~~~~~~~~~A~~~g~~~v~~~w~P~~~~~~~~~g~dl~~Le~~~~~~~~~~~~~~--~L~d~k~~--~~p~~~~ 236 (309)
T 1r9l_A 161 HNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADT--KLPNGANY--GFPVSTM 236 (309)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEECBCSSCCCTTCTTCCC--BCTTSCBC--SSCSEEE
T ss_pred EcCCCHHHHHHHHHHHHHCCCCEEEEeecCchHhhhccccCCceEeccCcccccccccccc--cCCCcccc--CCCcceE
Confidence 4433321 2222333344555555 344445567 9999876631 11112222 12111100 0013455
Q ss_pred EEEEEe---cCCcchHHHHHHHHH
Q 018090 310 SIVFTL---EEGPGMLFKALAVFA 330 (361)
Q Consensus 310 Si~f~~---~~~PGaL~~iL~~Fa 330 (361)
..+++- ...| .+.++|+.|.
T Consensus 237 ~~v~~~~~~~~~P-~~~~~L~~~~ 259 (309)
T 1r9l_A 237 HIVANKAWAEKNP-AAAKLFAIMQ 259 (309)
T ss_dssp EEEEEHHHHHHCH-HHHHHHHHCC
T ss_pred EEEechhHHHHCh-HHHHHHHhCC
Confidence 555543 2457 6788888874
No 99
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=54.11 E-value=84 Score=25.66 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=67.4
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC----CccCcc-
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~~Ik- 216 (361)
+.++++. ++.++++++++|++|.++-++--+-+. ...+... .-++.....|+++++. ++++++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~s-~p~~~~~~~l~~~~~~~~~~~~~dL~g 109 (227)
T 3tql_A 42 VCTISNQ-PWDSLIPSLKLGKFDALFGGMNITTAR----------QKEVDFT-DPYYTNSVSFIADKNTPLTLSKQGLKG 109 (227)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTG----------GGTEEEC-SCSBCCEEEEEEETTSCCCCSTTTTTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhH----------Hhheecc-cceeccceEEEEeCCCCCCCCHHHhCC
Confidence 3577776 799999999999999876333211110 0111111 1123345666666553 344543
Q ss_pred -EEEechHHHHHHHHHHHhc--C-CeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 -RVFSHPQALAQCEMTLSNL--G-IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 -~VySHPqALaQC~~fL~~~--~-~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|....-... ..+|.+. . +..+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 110 ~~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 110 KIIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp CEEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred CEEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 4433322211 3455543 3 7888999999999998875 35688888876654
No 100
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=53.99 E-value=50 Score=28.08 Aligned_cols=114 Identities=9% Similarity=-0.004 Sum_probs=67.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC----CccCcc-
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~~Ik- 216 (361)
+.++++. ++.++++++.+|++|.++.++.-+ +..+ ..+... .-++.....++++++. +++|++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~------~~r~----~~~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIK------EERR----KAIDFS-DPYYDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECC------HHHH----TTEEEC-SCCEEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccC------HHHH----cCccee-cceeeccEEEEEECCCCCcCChHHhCC
Confidence 4677776 679999999999999977554322 1111 111111 1223344566665543 334442
Q ss_pred -EEEechHHHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 -RVFSHPQALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 -~VySHPqALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|..-. .... ..+|.+. ...++.+.|..++.+++..+ .-.|+|+....+..
T Consensus 131 ~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 184 (249)
T 4f3p_A 131 KVIAAKT-GTAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAG--RVDAAMHDTPNVLF 184 (249)
T ss_dssp SEEEEET-TSHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CEEEEeC-CChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcC--CeeEEEeCcHHHHH
Confidence 443322 2222 3466553 47888999999999999876 35678887776654
No 101
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=53.84 E-value=11 Score=34.35 Aligned_cols=49 Identities=14% Similarity=-0.002 Sum_probs=38.8
Q ss_pred cEEEEeCCCCcHHHHHHHHHCC----CCceeecC-CHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKAYP----KCETVPCD-QFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~----~~e~vp~~-sf~eVf~aV~~g~~d~gVVP 169 (361)
.|||+-| .||-+|...+.++. +.+++... ++.++..++.+|++|.++++
T Consensus 97 K~Iav~~-~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 97 PALYVFG-NGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp CCEECSS-TTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CEEEecC-CCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 5788764 58888876655432 46788877 89999999999999999986
No 102
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=53.39 E-value=18 Score=32.60 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=53.2
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCCC----CceeecCCHHHHHHHHHc--CCcCeEEEeeecccccchHHhHHHHhc----C
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYPK----CETVPCDQFEAAFKAVEL--WLVDKAVLPIENSVGGSIHRNYDLLLR----H 188 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~~----~e~vp~~sf~eVf~aV~~--g~~d~gVVPIENS~~G~V~~tlDlL~~----~ 188 (361)
..+||+ ..|+..+....+.+++ .+.+.+.+.++++++|.+ |++|+.+.. ..+++.+.+ .
T Consensus 170 g~~vg~--~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~---------~~~~~~~~~~~~~~ 238 (294)
T 2rc8_A 170 GFRFGT--VRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMD---------KALLDYEVSIDADC 238 (294)
T ss_dssp TCCEEC--BTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEE---------HHHHHHHHHTCSSS
T ss_pred CeEEEE--EcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEec---------HHHHHHHHhhCCCC
Confidence 357887 4688877777666653 234568899999999999 999988864 223443322 2
Q ss_pred CeEEEEEEEEeeeeEeeeCCC
Q 018090 189 RLHIVGEVQLVVNHCLLGLPG 209 (361)
Q Consensus 189 ~L~IvgEi~lpI~h~Lla~~g 209 (361)
++.++++..-...+.++.+++
T Consensus 239 ~l~~~~~~~~~~~~~ia~~k~ 259 (294)
T 2rc8_A 239 KLLTVGKPFAIEGYGIGLPPN 259 (294)
T ss_dssp CEEECSCCEEEEEECCEECTT
T ss_pred CEEEcCCcccccceEEEecCC
Confidence 577777655555566666654
No 103
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=52.76 E-value=1e+02 Score=25.96 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=71.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEE--eeeeEeeeCCC-C---CccCc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL--VVNHCLLGLPG-V---LKEEL 215 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l--pI~h~Lla~~g-~---~l~~I 215 (361)
+.++++. ++.++++++.+|++|.++..+. .+-+. ...+.. .-++ .....++++++ . +++|+
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r--~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL 137 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMS--------ITPSR--QKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLT 137 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCB--------CCHHH--HTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGG
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCc--------cCHhH--hcceee--ecceecccceEEEEECCCCCCCCHHHh
Confidence 4678888 8999999999999998763222 11111 123333 4444 56677777665 2 44555
Q ss_pred c--EEEechHHHHHHHHHHHhc-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHc
Q 018090 216 K--RVFSHPQALAQCEMTLSNL-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (361)
Q Consensus 216 k--~VySHPqALaQC~~fL~~~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 272 (361)
+ +|....-. .. ..++.+. +.+.+.+.|..++.+.+..+ .-.|++.....+..+
T Consensus 138 ~g~~i~~~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 138 QYSSVAVQTGT-YQ-EHYLLSQPGICVRSFDSTLEVIMEVRYG--KSPVAVLEPSVGRVV 193 (268)
T ss_dssp GSSCEEEETTS-HH-HHHHHTSTTCCEEEESCHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCCEEEEecCc-HH-HHHHHhCCCceEEecCCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 3 44433222 22 3455554 57888889999999998876 356888887776654
No 104
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=52.24 E-value=12 Score=38.00 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=32.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCcccccee-eecCCC
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIE-SRPQRK 346 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIE-SRP~~~ 346 (361)
-..|++..+|+||.+.++.+.+.++|||+..+. +|-.++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~ 493 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG 493 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC
Confidence 467788889999999999999999999998875 344333
No 105
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=51.44 E-value=1.6e+02 Score=27.53 Aligned_cols=177 Identities=10% Similarity=-0.026 Sum_probs=99.2
Q ss_pred cccccCCCCCCCCccEEEEeCCCCcHHHHHHHHHC--------CCCceeecC---CHHHHHHHHHcCCcCeEEEeeec--
Q 018090 106 SIMELSSSPDDGTKVRVAYQGLPGAYSEAAARKAY--------PKCETVPCD---QFEAAFKAVELWLVDKAVLPIEN-- 172 (361)
Q Consensus 106 ~~~~~~~~~~~~~~~rIAyLGP~GTySe~AA~~~f--------~~~e~vp~~---sf~eVf~aV~~g~~d~gVVPIEN-- 172 (361)
|.+.-.+........|++.-.|+|+..++++.+|. +..++.|-. +-.+++++|..|.+|.+++..-+
T Consensus 3 ~~~~~~a~~~~a~~lr~a~~~~~~~~~~~~~~~fa~~Vee~s~G~i~v~p~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~ 82 (326)
T 3fxb_A 3 WSHPQFEKIEGRDTWRYAFEEAMTDVQGVYAQKFKEEIEANSDHEIQLFPYGTLGESADIMEQTQDGILQFVDQSPGFTG 82 (326)
T ss_dssp ------------CCCEEECSSCTTSHHHHHHHHHHHHHHHSSSCCCEEECTTSSCSHHHHHHHHHHTSCSEEECCHHHHT
T ss_pred CCCccccCcCcccEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHhCCCeeEEEecchhhh
Confidence 44444445556678999999999999999988763 234533322 46899999999999999874211
Q ss_pred ----------------cc--------ccc--hHHhHH-HHhcCCeEEEEEEEEeeeeEeeeCCCCCccCcc--EEEechH
Q 018090 173 ----------------SV--------GGS--IHRNYD-LLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELK--RVFSHPQ 223 (361)
Q Consensus 173 ----------------S~--------~G~--V~~tlD-lL~~~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik--~VySHPq 223 (361)
+. .|. +.+.++ .+.+.++++.+-....-.+....+|=.+++|++ +|..-+-
T Consensus 83 ~~~p~~~v~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~G~~~~~~~kpI~s~~DlkGlKiR~~~~ 162 (326)
T 3fxb_A 83 SLIPEAQVFFVPYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVAMTTKTPVTTCSDLDEVKFRVMTN 162 (326)
T ss_dssp TTSGGGGGGGSTTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEEEEESSCCSSGGGSTTCEEEECSC
T ss_pred hhCcchHHhcCCeecCCHHHHHHHHHcCcHHHHHHHHHHHHHcCeEEEEEecCCceEEecCCCCCChHHhCCCEEEecCC
Confidence 00 111 111222 233468888887777765533333333667776 5665432
Q ss_pred HHHHHHHHHHhcCCeEEec--cCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCce
Q 018090 224 ALAQCEMTLSNLGIVRISA--DDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVT 289 (361)
Q Consensus 224 ALaQC~~fL~~~~~~~i~~--~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~T 289 (361)
. --.++++.+|+..++. ...-.|.+ .+ --.++..+.....-+++.=+++.+......+.
T Consensus 163 ~--~~~~~~~alGa~pv~m~~~Evy~ALq---~G--vvDg~e~~~~~~~~~~~~Ev~ky~~~~~~~~~ 223 (326)
T 3fxb_A 163 P--LLVESYKAFGATPTPLPWGEVYGGLQ---TN--VIQGQENPTFFLYSTKIYEVTDYITYAGHNNF 223 (326)
T ss_dssp H--HHHHHHHHHTSEEEECCGGGHHHHHH---TT--SCCEEEEEHHHHHHTTGGGSCSEEEECCCCEE
T ss_pred H--HHHHHHHHcCCeeeecCHHHHHHHHH---cC--CcceEecCHHHHHhccHhhhcceeEEcCcccc
Confidence 2 2345777788766554 44444444 22 23567777666666666655555544343343
No 106
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=51.34 E-value=76 Score=27.48 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=65.5
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik-- 216 (361)
+.++++.+ +.++++++.+|++|+++-.+.- +-+. ...+... +-++.....|+++++. +++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r--~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITI--------TDER--KQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBC--------CHHH--HTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcC--------CHHH--HhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 46777876 9999999999999988632211 1111 1122211 1223444566666653 334442
Q ss_pred EEEechHHHHHHHHHHHhc---CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 RVFSHPQALAQCEMTLSNL---GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~---~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|....- ... ..+|.+. ..+++.+.+..++.+.+..+. -.|++.+...+..
T Consensus 149 ~i~~~~g-~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 149 TIGVQNA-TTG-QEAAEKLFGKGPHIKKFETTVVAIMELLNGG--VDAVITDNAVANE 202 (272)
T ss_dssp CEEEETT-SHH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred eEEEEcC-chH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcCC--ccEEEeCHHHHHH
Confidence 3443221 111 2345443 367778889999999988763 4577777766543
No 107
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=50.80 E-value=1.1e+02 Score=25.60 Aligned_cols=116 Identities=9% Similarity=-0.061 Sum_probs=63.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik-- 216 (361)
+.++++. ++.++++++.+|++|.++..+.-+ ...+ ..+.... -+......++++++. +++|++
T Consensus 82 ~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~------~~~~----~~~~~~~-p~~~~~~~~~~~~~~~i~~~~dL~g~ 149 (259)
T 2v25_A 82 KIKLVAV-NAKTRGPLLDNGSVDAVIATFTIT------PERK----RIYNFSE-PYYQDAIGLLVLKEKKYKSLADMKGA 149 (259)
T ss_dssp SEEEEEC-CTTTHHHHHHTTSCSEECSSCBCC------HHHH----TTEEECS-CSEEEEEEEEEEGGGCCCSGGGCTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEecCccC------HHHH----hcCcccc-cceeCceEEEEeCCCCCCCHHHhCCC
Confidence 3567777 458999999999999887443211 1111 1111111 112223445554432 334442
Q ss_pred EEEech--HHHHHHHHHHHhcC--CeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 RVFSHP--QALAQCEMTLSNLG--IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ~VySHP--qALaQC~~fL~~~~--~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|.... ......++++.+.+ .+.+.+.+..++.+.+..+. -.|++.+...+..
T Consensus 150 ~i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 206 (259)
T 2v25_A 150 NIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKR--VDAFSVDKSILLG 206 (259)
T ss_dssp EEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHTT
T ss_pred EEEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCC--CcEEEecHHHHHH
Confidence 343221 11223345555554 36778889899999988763 4577777665543
No 108
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=50.44 E-value=19 Score=34.08 Aligned_cols=36 Identities=3% Similarity=0.086 Sum_probs=32.5
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHHCCccccceeee
Q 018090 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 307 ~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
.+..|.+.-+|+||-.+++-+.++++|+|+..+...
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~ 44 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVF 44 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence 356677788999999999999999999999999987
No 109
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=50.14 E-value=70 Score=28.26 Aligned_cols=115 Identities=8% Similarity=0.001 Sum_probs=66.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik-- 216 (361)
+.++++.+ +.+++++|.+|++|+++..+.- ...+.-..+ .... -+......++++++. +++|++
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~----~t~~r~~~~-----~~~~-p~~~~~~~l~~~~~~~i~s~~dL~G~ 165 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVGL----TSPERQATF-----DKSE-PYSWSGAVLVAHNDSNIKSIADIKGV 165 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCCC----CSHHHHHHE-----EECS-CSEEECEEEEEETTCSCCSGGGCTTS
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCcc----CChhhhcce-----Eecc-CeeeecEEEEEECCCCCCCHHHhCCC
Confidence 46788887 9999999999999987743221 001111111 1111 122334456666543 344542
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|..-. .-. -..+|.+.+++++.+.+..++.+.+..+. -.|+|.....+..
T Consensus 166 ~v~v~~-g~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--vDa~i~~~~~~~~ 216 (283)
T 2yln_A 166 KTAQSL-TSN-YGEKAKAAGAQLVPVDGLAQSLTLIEQKR--ADATLNDELAVLD 216 (283)
T ss_dssp EEEECT-TSH-HHHHHHHTTCEEEECSSHHHHHHHHHTTS--CCEEEEEHHHHHH
T ss_pred EEEEec-Cch-HHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEecHHHHHH
Confidence 454322 211 23466666888888889999999888763 4577777665543
No 110
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=49.47 E-value=19 Score=33.95 Aligned_cols=35 Identities=9% Similarity=-0.143 Sum_probs=31.9
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeee
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
+..|.+.-+|+||-.+.+-+.|+++|+|+..+.+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 45677788999999999999999999999999887
No 111
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=48.39 E-value=35 Score=28.91 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=93.8
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCC--C---CccCcc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPG--V---LKEELK 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g--~---~l~~Ik 216 (361)
+.++++. ++..+++++.+|++|.++-++-. +-+. ...+.... -++.....++++++ . ++++++
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------t~~r--~~~~~~s~-p~~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 45 KLKLVPT-SWDGLIPGLVTEKFDIIISGMTI--------SQER--NLRVNFVE-PYIVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTSEECS-CSEEECEEEEEETTTTTTCCSGGGGC
T ss_pred eEEEEEc-cHHHHHHHHhCCCcCEEEecCcC--------CHHH--HhhcCcch-hhheeceEEEEECCcccccCCHHHhc
Confidence 3677775 69999999999999986533221 1111 11111111 22333456666655 2 445554
Q ss_pred ----EEEechHHHHHHHHHHHh-c-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceE
Q 018090 217 ----RVFSHPQALAQCEMTLSN-L-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTR 290 (361)
Q Consensus 217 ----~VySHPqALaQC~~fL~~-~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TR 290 (361)
+|... ..... ..+|.+ . +..++.+.|..++.+++..+ .-.|+|+....+..+- +.... ..
T Consensus 113 ~~g~~i~v~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~~~--------~~~~~--~~ 178 (245)
T 3k4u_A 113 KPELTLVTK-FGVSA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNVAFM--------AQKGQ--GY 178 (245)
T ss_dssp CSSCEEEEE-TTSHH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHHHHH--------HHTTT--TT
T ss_pred cCCcEEEEe-CCcHH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHHHHH--------hcCCc--cc
Confidence 34332 22222 345555 3 58889999999999999875 4578888876554331 00011 11
Q ss_pred EEEEeeCCCCCCCCCCceEEEEEEec-CCc---chHHHHHHHHHHCCccccceeeecCCCCCCeee
Q 018090 291 FLILAREPIIAGTDRPYKTSIVFTLE-EGP---GMLFKALAVFALRDINLTKIESRPQRKRPLRVV 352 (361)
Q Consensus 291 Flvl~r~~~~~~~~~~~KtSi~f~~~-~~P---GaL~~iL~~Fa~~~INLtkIESRP~~~~pw~y~ 352 (361)
+.++.. +. ....+.|.++ +.| ..|.++|..+...|- +.+|..|-....+|..-
T Consensus 179 ~~~~~~-~~-------~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~-~~~i~~k~~~~~~~~~~ 235 (245)
T 3k4u_A 179 LVHLDT-SL-------TYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGS-YDELYERWFVDTKWLEK 235 (245)
T ss_dssp EEEECC-CC-------SCEEECCEECTTCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHTCCSGGGC
T ss_pred eeecCC-Cc-------ccccEEEEEcCCCHHHHHHHHHHHHHHHhCcH-HHHHHHHhcCccccchh
Confidence 222221 10 1234444444 333 234445555555442 56777777777777653
No 112
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=48.24 E-value=18 Score=33.54 Aligned_cols=48 Identities=17% Similarity=0.005 Sum_probs=36.6
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCC-------CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYP-------KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~-------~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+||++ +.||-++.....++. +.++++. ++.+++.++.+|++|.++++
T Consensus 119 Gk~I~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 119 GKKIAL--HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp TSEEEE--CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred CCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 358998 479888877766542 2466665 68899999999999998865
No 113
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=46.67 E-value=24 Score=33.62 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=33.0
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHHCCccccceeeec
Q 018090 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRP 343 (361)
Q Consensus 307 ~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP 343 (361)
.+..|.+.-+|+||-.+.+-+.++++|+|+..+...-
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~ 57 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHS 57 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEe
Confidence 4667778889999999999999999999999998873
No 114
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=45.98 E-value=9.9 Score=32.40 Aligned_cols=34 Identities=29% Similarity=0.275 Sum_probs=27.2
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHHCCccccceee
Q 018090 308 KTSIVF-TLEEGPGMLFKALAVFALRDINLTKIES 341 (361)
Q Consensus 308 KtSi~f-~~~~~PGaL~~iL~~Fa~~~INLtkIES 341 (361)
|.|++= ...+.||.+.++++.|++.|||+..|-+
T Consensus 97 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~ 131 (167)
T 2dt9_A 97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT 131 (167)
T ss_dssp EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 455543 3567999999999999999999977753
No 115
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=45.88 E-value=15 Score=36.89 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=29.4
Q ss_pred eEEEEE--EecCCcchHHHHHHHHHHCCccccceeeecC
Q 018090 308 KTSIVF--TLEEGPGMLFKALAVFALRDINLTKIESRPQ 344 (361)
Q Consensus 308 KtSi~f--~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~ 344 (361)
++..++ .+.|+||.|.++-++|+++||++.++-.++.
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~ 395 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEP 395 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC-
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeeccc
Confidence 455554 5569999999999999999999999877765
No 116
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=45.02 E-value=37 Score=33.83 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=33.0
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCC
Q 018090 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQR 345 (361)
Q Consensus 307 ~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~ 345 (361)
....|.+.-.|.||.|.++-++|+++|||.....++-..
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~ 380 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDG 380 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCC
Confidence 356777777899999999999999999999998876543
No 117
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=44.17 E-value=2.7 Score=41.69 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=29.8
Q ss_pred cCCCCCCCcccchhhhhcccccccccccccCCcc
Q 018090 60 EDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~l 93 (361)
.=|+-|.|+++++|++++|.|++|+.|++++..+
T Consensus 344 ~iE~H~~pd~a~~D~~~sl~p~el~~lv~~i~~i 377 (385)
T 3nvt_A 344 MAEVHPDPAVALSDSAQQMDIPEFEEFWNAILAS 377 (385)
T ss_dssp EEEBCSCGGGCSSCTTTSBCHHHHHHHHHHHHHH
T ss_pred EEEecCChhhcCCcccccCCHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999988554
No 118
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=43.97 E-value=43 Score=27.73 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=66.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEee-eeEeeeCCCC--CccCcc--
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVV-NHCLLGLPGV--LKEELK-- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI-~h~Lla~~g~--~l~~Ik-- 216 (361)
+.++++. ++.++++++++|++|.++-++. .+-+. ...+.... -.+.. ...|+++++. +++|++
T Consensus 46 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r--~~~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL~g~ 113 (229)
T 2y7i_A 46 ECSFTNQ-SFDSLIPSLRFKKFDAVIAGMD--------MTPKR--EQQVSFSQ-PYYEGLSAVVVTRKGAYHTFADLKGK 113 (229)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCB--------CCHHH--HTTSEECS-CSBCCCCEEEEEETTSCCSTGGGTTC
T ss_pred eEEEEEc-CHHHHHHHHhCCCceEEEecCc--------cCHHH--hcceeecc-ccccCCcEEEEEeCCCCCCHHHHCCC
Confidence 3567775 7899999999999998762221 11111 11111111 12233 4566666552 334442
Q ss_pred EEEechHHHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 RVFSHPQALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|.... .... ..+|.+. +.+++.+.|..++.+++..+ .-.|+|+....+..
T Consensus 114 ~v~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 166 (229)
T 2y7i_A 114 KVGLEN-GTTH-QRYLQDKQQAITPVAYDSYLNAFTDLKNN--RLEGVFGDVAAIGK 166 (229)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESCHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred EEEEec-CCcH-HHHHHHhCCCCeEEecCCHHHHHHHHHcC--CcCEEEechHHHHH
Confidence 443322 2222 3466653 57888899999999999876 34678877776654
No 119
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=43.84 E-value=1.3e+02 Score=26.28 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=63.1
Q ss_pred HCCCCceeec-CCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC------C
Q 018090 139 AYPKCETVPC-DQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV------L 211 (361)
Q Consensus 139 ~f~~~e~vp~-~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~------~ 211 (361)
.+|+.++... .+-+++.+.+.+|++|+|+....... ...+ +..+.......++++.++- +
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~-----------~~~~--l~~~~L~~~~~~~v~~~~hpla~~~~ 183 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHD-----------IDTD--LEAQPLYVSDVVIVGQRQHPMANATR 183 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGG-----------SCTT--EEEEEEEECCEEEEEETTCTTTTCCS
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCC-----------CccC--eeEEEeecCcEEEEEcCCCCCCCCCC
Confidence 3677665433 34567888999999999998643110 0111 2223333334444443332 2
Q ss_pred ccCc---cEEE-echHH-HHHHHHHHHhcCC---e-EEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 018090 212 KEEL---KRVF-SHPQA-LAQCEMTLSNLGI---V-RISADDTAGAAQMVASIGERDTGAVASAQAAE 270 (361)
Q Consensus 212 l~~I---k~Vy-SHPqA-LaQC~~fL~~~~~---~-~i~~~STA~AA~~va~~~~~~~AAIas~~AA~ 270 (361)
++++ .-|. +.... -....+|+.+.+. . ...++|...+..+|+.+ ...|+.+...++
T Consensus 184 ~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 184 LAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp GGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred HHHHhCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 3333 3343 22222 2456677777654 2 35566777777777764 346777887765
No 120
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=43.11 E-value=40 Score=30.60 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=37.2
Q ss_pred ccEEEEeCCCCcHHHHHHHHHC---C----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 119 KVRVAYQGLPGAYSEAAARKAY---P----KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f---~----~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.++|++. .||.++....+++ + +.++++. ++.+++.++.+|++|.+++.
T Consensus 131 Gk~i~v~--~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 131 GKRIAFQ--KGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp TCEEEEC--TTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred CCEEEec--CCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 3579884 7998888766654 2 2566776 79999999999999988764
No 121
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=43.04 E-value=1.5e+02 Score=24.80 Aligned_cols=135 Identities=9% Similarity=-0.058 Sum_probs=72.8
Q ss_pred CCCccEEEEeCCCCc-HHHHHHH---HHCCCCcee-ecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCe
Q 018090 116 DGTKVRVAYQGLPGA-YSEAAAR---KAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (361)
Q Consensus 116 ~~~~~rIAyLGP~GT-ySe~AA~---~~f~~~e~v-p~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L 190 (361)
..+..+||+...-+. +--.+.. +.+|++++. -..+-.++.+.+.+|++|+|++.... . +
T Consensus 25 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~-------------~- 88 (238)
T 3onm_A 25 MEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--D-------------S- 88 (238)
T ss_dssp --CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC----------------C-
T ss_pred CceeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--C-------------C-
Confidence 455678877543322 2222222 236776653 34567789999999999999986431 0 1
Q ss_pred EEEEEEEEeeeeEeeeCCCCCc---cCccEEE-echHH-HHHHHHHHHhcCC--e-EEeccCHHHHHHHHHhcCCCCeEE
Q 018090 191 HIVGEVQLVVNHCLLGLPGVLK---EELKRVF-SHPQA-LAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGA 262 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~g~~l---~~Ik~Vy-SHPqA-LaQC~~fL~~~~~--~-~i~~~STA~AA~~va~~~~~~~AA 262 (361)
+..+.......++++.++-.+ ..+.-|. .+... .....+++.+.+. . ...++|...+.++|..+ ...|
T Consensus 89 -~~~~~l~~~~~~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gia 164 (238)
T 3onm_A 89 -HPHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGVT 164 (238)
T ss_dssp -CCEEEEEEECEEEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCBE
T ss_pred -cceEEeecCCEEEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeEE
Confidence 222333344455555554332 2333333 22222 3445667766553 2 35567777777777764 2456
Q ss_pred ecCHhhHH
Q 018090 263 VASAQAAE 270 (361)
Q Consensus 263 Ias~~AA~ 270 (361)
|.+...++
T Consensus 165 ilp~~~~~ 172 (238)
T 3onm_A 165 ARPIEMMS 172 (238)
T ss_dssp EEEGGGCC
T ss_pred EechHHcc
Confidence 66666543
No 122
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=42.87 E-value=14 Score=31.23 Aligned_cols=115 Identities=14% Similarity=0.031 Sum_probs=67.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC-----CccCcc
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV-----LKEELK 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~-----~l~~Ik 216 (361)
+.++++. ++.++++++++|++|.++.++.-+ +.-. ..+.... -++.....++++++. ++++++
T Consensus 55 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t------~~r~----~~~~fs~-p~~~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 55 KLVVVPT-SWPNLMRDFADDRFDIAMSGISIN------LERQ----RQAYFSI-PYLRDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp EEEEEEC-CTTTHHHHHHTTCCSEECSSCBCC------HHHH----TTCEECS-CSEEECEEEEEEGGGGGGGSSHHHHS
T ss_pred ceEEEEe-CHHHHHHHHHCCCcCEEEeCCcCC------HHHc----Cccccch-HHhccCcEEEEECCcccccCCHHHhc
Confidence 3677887 899999999999999876443211 1111 1111111 122334455555431 344443
Q ss_pred ----EEEechHHHHHHHHHHHh-c-CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHc
Q 018090 217 ----RVFSHPQALAQCEMTLSN-L-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIY 272 (361)
Q Consensus 217 ----~VySHPqALaQC~~fL~~-~-~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 272 (361)
+|....-.. -..+|.+ . +..++.+.|..++.+++..+ .-.|+|.....+..+
T Consensus 123 ~~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~~ 180 (239)
T 3kbr_A 123 QPGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDG--KADLMMTDAIEARLQ 180 (239)
T ss_dssp STTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTT--SCSEEEEEHHHHHHH
T ss_pred CCCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcC--CcCEEEEchHHHHHH
Confidence 454332221 1345555 3 47888889999999999876 346788777766543
No 123
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=42.77 E-value=26 Score=33.04 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=32.3
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHHCCccccceeee
Q 018090 307 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 307 ~KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
.+..|.+.-+|+||-.+.+-+.++++|+|+..+...
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~ 41 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQF 41 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeee
Confidence 356677888999999999999999999999999886
No 124
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=42.42 E-value=39 Score=29.77 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=37.0
Q ss_pred CccEEEEeCCCCcHHHHHHHHHCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 118 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA~~~f~~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
+.+|||+-+ .|+-++...+.+..+.+++.. .+.++..++.+|++|.++++
T Consensus 95 kGk~Ia~~~-~~~~~~~ll~~ll~~~~~~~~-~~~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 95 EGLRVAVPG-RHTTAYFLLSLYAQGFVPVEV-RYDRILPMVAQGEVEAGLII 144 (272)
T ss_dssp TTCEEEESC-TTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEEC
T ss_pred CCCEEEeCC-CCchHHHHHHHHhccCceeec-ChHHHHHHHHCCCCCEEEEe
Confidence 346899986 466556666666666666655 45689999999999999986
No 125
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=42.05 E-value=1.4e+02 Score=24.41 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=68.6
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCCC----ccCcc-
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVL----KEELK- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~----l~~Ik- 216 (361)
+.++++. ++.++++++++|++|. +.++-- +-+. ...+... .-.+.....|+++++.. ++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~--------~~~r--~~~~~~s-~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISW--------SEKR--ARQIDFT-PPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEEC--------CHHH--HTTEEEE-EEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccC--------CHhH--HhhcCCC-ccccccceEEEEECCCCCCCCHHHhCC
Confidence 4677765 7999999999999998 444321 1111 1223322 34556667788776643 33332
Q ss_pred -EEEechHHHHHHHHHHHhcC--CeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHH
Q 018090 217 -RVFSHPQALAQCEMTLSNLG--IVRISADDTAGAAQMVASIGERDTGAVASAQAAE 270 (361)
Q Consensus 217 -~VySHPqALaQC~~fL~~~~--~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~ 270 (361)
+|....-. . -..+|.+.+ ++.+.+.|..++.+++..+ .-.|+|.....+.
T Consensus 118 ~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDG-I-MHEYLAERGYGKDLVLTPTPADALRLLAAG--GCDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTS-H-HHHHHHTTTCGGGEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CEEEEEeCc-h-HHHHHHhcCCCceEEEeCCHHHHHHHHHcC--CceEEEeccHHHH
Confidence 33322211 1 135666643 6888899999999999876 3467777776654
No 126
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=41.71 E-value=17 Score=31.00 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.6
Q ss_pred ecCCcchHHHHHHHHHHCCcccccee
Q 018090 315 LEEGPGMLFKALAVFALRDINLTKIE 340 (361)
Q Consensus 315 ~~~~PGaL~~iL~~Fa~~~INLtkIE 340 (361)
..+.||.+.++++.|+++|||+..|-
T Consensus 113 m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 113 MRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred cCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 45789999999999999999999985
No 127
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=40.83 E-value=50 Score=27.70 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=70.7
Q ss_pred CCCccEEEEeCCCCcH-HHHHH---HHHCCCCceeec-CCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCe
Q 018090 116 DGTKVRVAYQGLPGAY-SEAAA---RKAYPKCETVPC-DQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTy-Se~AA---~~~f~~~e~vp~-~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L 190 (361)
..+..+||+....+.+ =-.+. ++.+|++++.-. .+..++.+.|.+|++|+|++.......+. ....|.+..+
T Consensus 6 ~~g~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l---~~~~l~~~~~ 82 (218)
T 2y7p_A 6 STRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGF---FQRRLFRHRY 82 (218)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTE---EEEEEEEECE
T ss_pred cceEEEEEecHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCcce---eEEEeeeccE
Confidence 4466778765322211 11112 223677665433 34578899999999999997422111110 0001111111
Q ss_pred EEEEEEEEeeeeEeeeCCCCCccCcc---EEEe-ch-HHHHHHHHHHHhcCC--e-EEeccCHHHHHHHHHhcCCCCeEE
Q 018090 191 HIVGEVQLVVNHCLLGLPGVLKEELK---RVFS-HP-QALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGERDTGA 262 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~g~~l~~Ik---~VyS-HP-qALaQC~~fL~~~~~--~-~i~~~STA~AA~~va~~~~~~~AA 262 (361)
. +.+|-.|-|.. +..+++++. -|.. .+ ....+..+++.+.+. . ...++|...+..+|+.+ ...|
T Consensus 83 ~----~v~~~~hpla~-~~i~l~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g---~Gia 154 (218)
T 2y7p_A 83 V----CMFRKDHPSAK-SPMSLKQFTELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIA 154 (218)
T ss_dssp E----EEEETTCSSCC-SSCCHHHHHHSEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBE
T ss_pred E----EEEcCCCCCCC-CCCCHHHHhhCCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCC---CEEE
Confidence 1 22344555543 334555543 2322 21 122334555665553 2 35566767777777764 2356
Q ss_pred ecCHhhHH
Q 018090 263 VASAQAAE 270 (361)
Q Consensus 263 Ias~~AA~ 270 (361)
|.+..++.
T Consensus 155 ilp~~~~~ 162 (218)
T 2y7p_A 155 TVPQRFAV 162 (218)
T ss_dssp EEEHHHHH
T ss_pred EcHHHHHH
Confidence 66766543
No 128
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=39.87 E-value=1.7e+02 Score=26.91 Aligned_cols=112 Identities=20% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCccEEEEeC-CCCcHHHHHHHHHC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh---c
Q 018090 116 DGTKVRVAYQG-LPGAYSEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---R 187 (361)
Q Consensus 116 ~~~~~rIAyLG-P~GTySe~AA~~~f---~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~---~ 187 (361)
.....|||+.+ |..--=+.+...+. | +.+++.+.+....-.|+.+|++|....=.. +.++.+. .
T Consensus 4 ~~~~ikVG~~~~p~~~il~~~~~~l~~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~--------pyL~~~nk~~g 75 (237)
T 3k2d_A 4 DTSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHK--------PYLDRQVEDRD 75 (237)
T ss_dssp CCCCEEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHHTSCSEEEEEEH--------HHHHHHHHHHC
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHHHhcCCEEEEEEeCChHhHHHHHHcCCCCeeccCCH--------HHHHHHHHHCC
Confidence 34568999984 32221122322222 2 478999999999999999999999886433 3444332 3
Q ss_pred CCeEEEEEEEEeeeeEeeeCCCCCccCcc---EEE--echHHHHHHHHHHHhcC
Q 018090 188 HRLHIVGEVQLVVNHCLLGLPGVLKEELK---RVF--SHPQALAQCEMTLSNLG 236 (361)
Q Consensus 188 ~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik---~Vy--SHPqALaQC~~fL~~~~ 236 (361)
++|..+|.+.+.- ..|.+.+-.+++|++ +|. .-|--.+..-..|.+.|
T Consensus 76 ~~lv~v~~~~~~p-~glYS~k~ksl~dL~~Ga~IaipnD~tN~~RaL~lL~~aG 128 (237)
T 3k2d_A 76 YKLTIAGNTFVYP-IAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQG 128 (237)
T ss_dssp CCEEEEEECCCCC-CEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCEEEEeeecccc-eEEecCCCCCHHHhcCCCEEEecCCccHHHHHHHHHHHCC
Confidence 5787777655442 466666656788887 544 34444444445555544
No 129
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=39.79 E-value=2.3e+02 Score=26.10 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=86.2
Q ss_pred CccEEEEeCCCCcHHH--HHHHHHCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh---cC
Q 018090 118 TKVRVAYQGLPGAYSE--AAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RH 188 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe--~AA~~~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~---~~ 188 (361)
...|||+.+ |.+.+ +.+...+. +.+++.+.+....-.|+.+|++|.+..=.. +.++... .+
T Consensus 4 ~~i~VG~~~--~p~~~i~~~v~~~l~k~Gi~veiv~F~dy~~pN~AL~~G~iD~n~fQh~--------pyl~~~~k~~g~ 73 (246)
T 4ef1_A 4 SVLKVGASP--VPHAEILEHVKPLLEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHV--------PFFNEAVKENDY 73 (246)
T ss_dssp EEEEEEECT--TTHHHHHHHHHHHHHHTTEEEEEEECSSSSHHHHHHHHTSCSEEEEEEH--------HHHHHHHHHHTC
T ss_pred cEEEEEEeC--CChHHHHHHHHHHHHhcCCEEEEEEeCCchhHHHHHHCCCCCEEecCCH--------HHHHHHHHHCCC
Confidence 457899984 23332 23334442 368999999999999999999999886432 3344332 35
Q ss_pred CeEEEEEEEEeeeeEeeeCCCCCccCcc---EEE--echHHHHHHHHHHHhcCC------------------------eE
Q 018090 189 RLHIVGEVQLVVNHCLLGLPGVLKEELK---RVF--SHPQALAQCEMTLSNLGI------------------------VR 239 (361)
Q Consensus 189 ~L~IvgEi~lpI~h~Lla~~g~~l~~Ik---~Vy--SHPqALaQC~~fL~~~~~------------------------~~ 239 (361)
+|..+|.+.+.. ..|.+.+-.+++|++ +|. .-|--.+..-..|.+.|+ ++
T Consensus 74 ~Lv~v~~~~~~p-~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~ 152 (246)
T 4ef1_A 74 DFVNAGAIHLEP-VGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKF 152 (246)
T ss_dssp CEEEEEEEEECC-CEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEE
T ss_pred CEEEEeeccccc-eEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEE
Confidence 788888765543 466666555778886 444 233333444455655442 34
Q ss_pred -EeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeec
Q 018090 240 -ISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAE 279 (361)
Q Consensus 240 -i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~ 279 (361)
+.. +.+..++.+.++ .- .||+.+..-|-.-||.....
T Consensus 153 ~~el-~aaql~~al~dg-~v-Daavin~n~a~~agl~p~~d 190 (246)
T 4ef1_A 153 NHES-DPAIMTTLYDNE-EG-AAVLINSNFAVDQGLNPKKD 190 (246)
T ss_dssp EEEE-CGGGHHHHHHTT-CS-SEEEECHHHHHHTTCCHHHH
T ss_pred eeec-CHHHHHHHhccc-cc-cEEEEechHHHHcCCCCccC
Confidence 443 334445544432 23 45554555555668875433
No 130
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=39.59 E-value=1.5e+02 Score=23.88 Aligned_cols=139 Identities=15% Similarity=0.031 Sum_probs=68.5
Q ss_pred CccEEEEeCCCCcH-HHHHH---HHHCCCCcee-ecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEE
Q 018090 118 TKVRVAYQGLPGAY-SEAAA---RKAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHI 192 (361)
Q Consensus 118 ~~~rIAyLGP~GTy-Se~AA---~~~f~~~e~v-p~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~I 192 (361)
+..+||+...-+.+ =-.+. ++.+|+.++. -..+-.++.+.+.+|++|+|++.-.....+... ..|.+..+.
T Consensus 5 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~- 80 (209)
T 2ql3_A 5 GPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQT---VPLMTREPM- 80 (209)
T ss_dssp EEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEEE---EEEEEECCE-
T ss_pred eeEEEeechhhhhhhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCceE---EEeecCceE-
Confidence 45677775443322 11222 2346776553 345678899999999999999863211111000 011111111
Q ss_pred EEEEEEeeeeEeeeCC-CCCccCc---cEEEechHHH-HHHHHHHHhcCC---eEEeccCHHHHHHHHHhcCCCCeEEec
Q 018090 193 VGEVQLVVNHCLLGLP-GVLKEEL---KRVFSHPQAL-AQCEMTLSNLGI---VRISADDTAGAAQMVASIGERDTGAVA 264 (361)
Q Consensus 193 vgEi~lpI~h~Lla~~-g~~l~~I---k~VySHPqAL-aQC~~fL~~~~~---~~i~~~STA~AA~~va~~~~~~~AAIa 264 (361)
+..+-.|-|...+ ..+++++ .-|...+... .+..+++.+.+. ....++|...+.++|+.+ ...||.
T Consensus 81 ---~v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi~~l 154 (209)
T 2ql3_A 81 ---VVLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRG---LGWTLL 154 (209)
T ss_dssp ---EEEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHT---SCBEEE
T ss_pred ---EEEeCCCccccCCCCcCHHHHhCCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcC---CeEEEe
Confidence 1223334343322 2444444 3343222222 345556665442 245677777777777765 234555
Q ss_pred CH
Q 018090 265 SA 266 (361)
Q Consensus 265 s~ 266 (361)
+.
T Consensus 155 p~ 156 (209)
T 2ql3_A 155 LQ 156 (209)
T ss_dssp SC
T ss_pred eC
Confidence 54
No 131
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=39.16 E-value=1.9e+02 Score=24.89 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=70.5
Q ss_pred CCCccEEEEeCCCCc-HHHHHHH---HHCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCe
Q 018090 116 DGTKVRVAYQGLPGA-YSEAAAR---KAYPKCETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (361)
Q Consensus 116 ~~~~~rIAyLGP~GT-ySe~AA~---~~f~~~e~vp-~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L 190 (361)
..+..+||+...-+. +--.... +.+|+.++.. ..+-.++.+.+.+|++|+|++.......+ +.. .
T Consensus 89 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~--------l~~--~ 158 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPG--------IEI--V 158 (294)
T ss_dssp CCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTT--------EEE--E
T ss_pred CCceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCC--------ceE--E
Confidence 345678887654432 2222222 2367765533 23467889999999999999864321111 000 0
Q ss_pred EEEE-E--EEEeeeeEeeeCCCCCccCc---cEEEec----hHHHHHHHHHHHhcCC--e-EEeccCHHHHHHHHHhcCC
Q 018090 191 HIVG-E--VQLVVNHCLLGLPGVLKEEL---KRVFSH----PQALAQCEMTLSNLGI--V-RISADDTAGAAQMVASIGE 257 (361)
Q Consensus 191 ~Ivg-E--i~lpI~h~Lla~~g~~l~~I---k~VySH----PqALaQC~~fL~~~~~--~-~i~~~STA~AA~~va~~~~ 257 (361)
.+.. + +..+-.|-|...+..+++++ .-|... +..-....+++.+.+. . ...++|...+.++|..+
T Consensus 159 ~l~~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g-- 236 (294)
T 1ixc_A 159 NIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAG-- 236 (294)
T ss_dssp EEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT--
T ss_pred EEeeccEEEEEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcC--
Confidence 1111 1 11222233322222334444 334332 1223445667766553 3 35567777777777764
Q ss_pred CCeEEecCHhhH
Q 018090 258 RDTGAVASAQAA 269 (361)
Q Consensus 258 ~~~AAIas~~AA 269 (361)
...|+.+...+
T Consensus 237 -~Gia~lp~~~~ 247 (294)
T 1ixc_A 237 -AASSIVPASVA 247 (294)
T ss_dssp -SCBEEEEHHHH
T ss_pred -CeEEEechhhh
Confidence 23566677654
No 132
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=37.83 E-value=39 Score=28.80 Aligned_cols=113 Identities=8% Similarity=-0.072 Sum_probs=64.7
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC-----CccCcc-
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV-----LKEELK- 216 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~-----~l~~Ik- 216 (361)
.++++. ++.+++.++++|++|.++-++.-+ -+. ...+... .-++.....++++++. ++++++
T Consensus 54 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t--------~~r--~~~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~~ 121 (257)
T 2q88_A 54 VVASIS-EYGAMIPGLQAGRHDAITAGLFMK--------PER--CAAVAYS-QPILCDAEAFALKKGNPLGLKSYKDIAD 121 (257)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSCCBCC--------HHH--HTTSEEC-SCCCEECEEEEEETTCTTCCCBHHHHHH
T ss_pred eeEEeC-CHHHHHHHHHCCCcCEEEecccCC--------HHH--Hhccccc-cchhcCceEEEEECCCccCCCCHHHHhc
Confidence 567776 489999999999999876333211 111 1111111 1122334566666553 233443
Q ss_pred ----EEEechHHHHHHHHHHHhcC---CeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 ----RVFSHPQALAQCEMTLSNLG---IVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ----~VySHPqALaQC~~fL~~~~---~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|.... .... ..+|.+.+ .+++.+.+..++.+++..+. -.|+|.....+..
T Consensus 122 ~~g~~i~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~i~~~~~~~~ 179 (257)
T 2q88_A 122 NPDAKIGAPG-GGTE-EKLALEAGVPRDRVIVVPDGQSGLKMLQDGR--IDVYSLPVLSIND 179 (257)
T ss_dssp CTTCCEEECT-TSHH-HHHHHHTTCCGGGEEECSSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred cCCceEEEEC-Cccc-HHHHHhcCCCCceEEEcCCHHHHHHHHHcCC--CcEEEcCHHHHHH
Confidence 343322 2122 34666653 47788899999999998863 4677777766544
No 133
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=37.71 E-value=2.1e+02 Score=25.21 Aligned_cols=137 Identities=7% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCccEEEEeCCCCcHH------HHHHHHHCCC--CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhc-
Q 018090 117 GTKVRVAYQGLPGAYS------EAAARKAYPK--CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR- 187 (361)
Q Consensus 117 ~~~~rIAyLGP~GTyS------e~AA~~~f~~--~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~- 187 (361)
.+..+|++.++-|+|- .+...+.+++ .++.+..+-.+.+++|.+|++|++++. .........
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~---------~~~~~~~~~~ 88 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQ---------NDIAYYAYQG 88 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEE---------HHHHHHHHHT
T ss_pred CceEEEEeCCCCchhHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEc---------cHhHHHHhcC
Q ss_pred -----------CCeEEEEEEEEeeeeEeeeCCCCCccCccEEEechHHH--------HHHHHHHHhcCCe-----EEecc
Q 018090 188 -----------HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQAL--------AQCEMTLSNLGIV-----RISAD 243 (361)
Q Consensus 188 -----------~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik~VySHPqAL--------aQC~~fL~~~~~~-----~i~~~ 243 (361)
.++..++ ....-...|+++++..+.++..+..++-+. .....++++.++. .+...
T Consensus 89 ~~~~~~~~~~~~~~~~v~-~~~~~~~~lvv~~~~~i~sl~dL~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~ 167 (314)
T 1us5_A 89 CCIPAFEGKPVKTIRALA-ALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRV 167 (314)
T ss_dssp CSSTTTTTCCCTTEEEEE-EEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECC
T ss_pred CCCCCCCCCCccchhehh-hcCcceEEEEEECCCCCCcHHHhCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecC
Q ss_pred CHHHHHHHHHhcCCCCeEEecC
Q 018090 244 DTAGAAQMVASIGERDTGAVAS 265 (361)
Q Consensus 244 STA~AA~~va~~~~~~~AAIas 265 (361)
+.+++...+..+ .-.+++..
T Consensus 168 ~~~~~~~al~~G--~vda~~~~ 187 (314)
T 1us5_A 168 SASQGIQLMQDK--RADALFYT 187 (314)
T ss_dssp CHHHHHHHHHTT--SCSEEEEE
T ss_pred CHHHHHHHHHcC--CccEEEEc
No 134
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=37.62 E-value=90 Score=26.00 Aligned_cols=115 Identities=7% Similarity=-0.075 Sum_probs=62.9
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCC-CC---CccCcc--
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLP-GV---LKEELK-- 216 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~-g~---~l~~Ik-- 216 (361)
.++++. ++.++++++.+|++|.++-++- ..+.-... +... .-++.....+++++ +. ++++++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~------~~~~r~~~----~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLS------YTKERAEK----YLYA-APIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCC------CCHHHHHH----EEEC-CCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccc------cChhhhhc----eeec-cceecCceEEEEECCCCCCCCHHHhCCC
Confidence 467787 8999999999999998763321 11111111 1111 22233345666665 32 334442
Q ss_pred EEEech--HHHHHHHHHHHhcC---CeEEec-cCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 RVFSHP--QALAQCEMTLSNLG---IVRISA-DDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ~VySHP--qALaQC~~fL~~~~---~~~i~~-~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|.... .......+++..++ +.+... .|..++.+++..+ .-.|+|+....+..
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~ 175 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDG--QFDYKIFDKIGVET 175 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcC--CceEEEecHHHHHH
Confidence 443322 11233334444443 455544 4788899988876 35678877776553
No 135
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=37.40 E-value=1.3e+02 Score=22.77 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=64.6
Q ss_pred EEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceEEEEEeeC
Q 018090 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILARE 297 (361)
Q Consensus 218 VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TRFlvl~r~ 297 (361)
|=.++......+..|.+.+++...+.+..+|.+.+.+.. ....|.........|++++..=-++.....+.+++++..
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 13 VDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECT
T ss_pred EcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECC
Confidence 445677788888889888888888888888888877642 345554433333445554443222223456889999876
Q ss_pred CCCCCCCCC--ceEEEEEEecCCcchHHHHHHHHH
Q 018090 298 PIIAGTDRP--YKTSIVFTLEEGPGMLFKALAVFA 330 (361)
Q Consensus 298 ~~~~~~~~~--~KtSi~f~~~~~PGaL~~iL~~Fa 330 (361)
......... .-..-++.-|-.+..|...|....
T Consensus 91 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 91 NAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp TCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 432111111 123334444555667777766543
No 136
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=37.37 E-value=3.4 Score=40.51 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=28.5
Q ss_pred CCCCCCcccc--hhhhhcccccccccccccCCcc
Q 018090 62 DRPYTPDVQS--SEANERSQDSQSSGFHKDLNLL 93 (361)
Q Consensus 62 ~~~~~p~~~~--~~~~~~~~~~~~~~~~~d~~~l 93 (361)
|+-|.|++++ +|+.|||.|++|..|++++..+
T Consensus 234 EkH~tld~a~~G~D~~~SL~p~ef~~lv~~ir~~ 267 (349)
T 2wqp_A 234 ERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHAL 267 (349)
T ss_dssp EEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHH
T ss_pred EeCCCccccCCCCChhhhCCHHHHHHHHHHHHHH
Confidence 5668899998 9999999999999999998655
No 137
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=37.35 E-value=1e+02 Score=29.08 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=68.4
Q ss_pred CCccEEEEeCCCCcHHHH---HHHHHCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh---
Q 018090 117 GTKVRVAYQGLPGAYSEA---AARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL--- 186 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~---AA~~~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~--- 186 (361)
....|||+.+ |.+.+. ++...+. +.+++.+.+....-.|+.+|++|....-.. +.++...
T Consensus 22 ~~tIkVG~~~--~p~~~il~~~~k~~l~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~--------pyL~~~nk~~ 91 (275)
T 3gxa_A 22 KKEIVFGTTV--GDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHK--------PYLDDFKKEH 91 (275)
T ss_dssp -CEEEEEEET--THHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECH--------HHHHHHHHHH
T ss_pred CCeEEEEEeC--CChHHHHHHHHHHHHHHcCCeEEEEEeCCcHhHHHHHHcCCCCeeecCCH--------HHHHHHHHHc
Confidence 4568999985 444442 2334442 268999999999999999999998885422 3444433
Q ss_pred cCCeEEEEEEEEeeeeEeeeCCCCCccCcc---EEEe--chHHHHHHHHHHHhcC
Q 018090 187 RHRLHIVGEVQLVVNHCLLGLPGVLKEELK---RVFS--HPQALAQCEMTLSNLG 236 (361)
Q Consensus 187 ~~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik---~VyS--HPqALaQC~~fL~~~~ 236 (361)
.++|..+|.+.+.- ..|.+.+-.+++|++ +|.- -|--.+..-..|.+.|
T Consensus 92 g~~Lv~v~~~~~~p-~glYS~kiksl~dL~~Ga~IAIPnDptN~~RaL~lL~~aG 145 (275)
T 3gxa_A 92 NLDITEVFQVPTAP-LGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELG 145 (275)
T ss_dssp TCCEEEEEECCBCC-CEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeccccc-eEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHHHCC
Confidence 35788777755432 466666656788887 5543 3443444444555544
No 138
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=37.22 E-value=13 Score=31.27 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=25.0
Q ss_pred cCCcchHHHHHHHHHHCCccccceeeec
Q 018090 316 EEGPGMLFKALAVFALRDINLTKIESRP 343 (361)
Q Consensus 316 ~~~PGaL~~iL~~Fa~~~INLtkIESRP 343 (361)
++.||.+.++++.|+++|||.-.|-+-+
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~ 56 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE 56 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC
Confidence 5789999999999999999999997643
No 139
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=36.46 E-value=1.6e+02 Score=27.01 Aligned_cols=86 Identities=13% Similarity=-0.017 Sum_probs=53.7
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-cCCeEEEEEEEEeeeeEeeeCCCC----CccCcc-
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRLHIVGEVQLVVNHCLLGLPGV----LKEELK- 216 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~~L~IvgEi~lpI~h~Lla~~g~----~l~~Ik- 216 (361)
++++...+-.++.++|.+|++|+|+...+ ..+.... ..++++++-+.-.-...+++.++. +++|++
T Consensus 40 Vei~~~~~~~~~~~al~sG~~D~g~~~~~--------~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLkG 111 (342)
T 4esw_A 40 IAILEPSNPSDVTELVGSGKVDMGLKAMV--------GTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKG 111 (342)
T ss_dssp EEEEEESSGGGHHHHHHHTSSSEEEEEHH--------HHHHHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGTT
T ss_pred EEEEeCCChHHHHHHHHcCCcCEEEecHH--------HHHHHHHCCCCeEEEEEeccCCcccccccccccccCCHHHhCC
Confidence 68889999999999999999999986432 2233322 246777776655444556654432 234443
Q ss_pred -EEE-echHHHHHHHHHHHhcC
Q 018090 217 -RVF-SHPQALAQCEMTLSNLG 236 (361)
Q Consensus 217 -~Vy-SHPqALaQC~~fL~~~~ 236 (361)
+|. .........+.+|++.|
T Consensus 112 K~ig~~~~~~~~~l~~~L~~~G 133 (342)
T 4esw_A 112 KRIGYVGEFGKIQVDELTKHYG 133 (342)
T ss_dssp CEEEESSSHHHHHHHHHHGGGT
T ss_pred CEEEecCCchHHHHHHHHHHcC
Confidence 443 22333445677787764
No 140
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=36.33 E-value=2.6e+02 Score=25.70 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=68.4
Q ss_pred CccEEEEeCCCCcHHH--HHHHHHC----C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh---c
Q 018090 118 TKVRVAYQGLPGAYSE--AAARKAY----P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---R 187 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe--~AA~~~f----~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~---~ 187 (361)
...|||+.+ |.+++ +.+...+ | +.+++.+.+....-.|+.+|++|....=.. +.++... .
T Consensus 3 ~~ikVG~~~--~p~~~i~~~~~~~l~~~~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyl~~~~k~~g 72 (240)
T 3tqw_A 3 AMVRVGTIA--GPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHL--------PYLKAQIEMRG 72 (240)
T ss_dssp -CEEEEEET--THHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHTTSCSEEEEEEH--------HHHHHHHHHHC
T ss_pred ceEEEEEeC--CChHHHHHHHHHHHHHhcCCeEEEEEeCChHhHHHHHHcCCcCeeccCCH--------HHHHHHHHHCC
Confidence 457899984 23332 2222222 2 478999999999999999999998875432 3444332 3
Q ss_pred CCeEEEEEEEEeeeeEeeeCCCCCccCcc---EEE--echHHHHHHHHHHHhcC
Q 018090 188 HRLHIVGEVQLVVNHCLLGLPGVLKEELK---RVF--SHPQALAQCEMTLSNLG 236 (361)
Q Consensus 188 ~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik---~Vy--SHPqALaQC~~fL~~~~ 236 (361)
++|..+|.+.+.- ..|.+.+-.+++|++ +|. .-|--.+..-..|.+.|
T Consensus 73 ~~lv~v~~~~~~p-~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~aG 125 (240)
T 3tqw_A 73 YKIVSIGKTFVYP-MGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQ 125 (240)
T ss_dssp CCEEEEEEEEECC-CEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCEEEEeeccccc-eEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHHHHHCC
Confidence 5788777766543 567776656788887 544 33444454555666655
No 141
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=36.32 E-value=19 Score=31.23 Aligned_cols=113 Identities=8% Similarity=-0.074 Sum_probs=62.8
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--E
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK--R 217 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik--~ 217 (361)
.++++++ +.++++++.+|++|.++-++ ..+-+.- ..+.... -++.....++++++. +++|++ +
T Consensus 62 ~~~~~~~-~~~~~~~l~~g~~D~~~~~~--------~~t~~r~--~~~~fs~-p~~~~~~~~~~~~~~~i~~~~dL~g~~ 129 (268)
T 3hv1_A 62 VEWQAID-WDMKETELKNGTIDLIWNGY--------SVTDERK--QSADFTE-PYMVNEQVLVTKKSSGIDSVAGMAGKT 129 (268)
T ss_dssp EEEEECC-GGGHHHHHHHTSCSEECSSC--------BCCHHHH--TTCEECC-CCEEECEEEEEEGGGCCCSSGGGTTCC
T ss_pred EEEEECC-HHHHHHHHHCCCCCEEEecC--------ccCHHHH--hcCcCcH-HHeeCceEEEEECCCCCCCHHHhCCCE
Confidence 5778874 99999999999999876221 1121111 1111111 223344566665542 333432 2
Q ss_pred EEechHHHHHHHHHHHhc---------CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 218 VFSHPQALAQCEMTLSNL---------GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 218 VySHPqALaQC~~fL~~~---------~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
|..- ..... ..+|.+. +.+++.+.|..++.+++..+. -.|+|+....+..
T Consensus 130 i~v~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 188 (268)
T 3hv1_A 130 LGAQ-AGSSG-YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR--IDGLLIDRVYANY 188 (268)
T ss_dssp EEEE-TTCHH-HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred EEEE-eCCch-HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC--CCEEEeCHHHHHH
Confidence 3221 11111 1222221 167888999999999999863 4678877776544
No 142
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=36.16 E-value=1.1e+02 Score=28.37 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh---cCCeE
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYP----KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL---RHRLH 191 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~----~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~---~~~L~ 191 (361)
..|||+.+-+.+--.+.+..++. +.+++.+.+....-.|+.+|++|....=.. +.++.+. .++|.
T Consensus 12 ~ikVG~~~~p~~~il~~v~~~~~k~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyL~~~~k~~g~~lv 83 (252)
T 4ib2_A 12 TIKVAASATPHAEILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHV--------PYLESFNEEKGTHLV 83 (252)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHHHTTCEEEEEECSSSSHHHHHHHTTSSSEEEEEEH--------HHHHHHHHHHCCCEE
T ss_pred eEEEEEcCCChHHHHHHHHHHHHhcCCeEEEEEecChhhHHHHHHcCCcCeeecCCH--------HHHHHHHHHCCCCEE
Confidence 57899984322222234444442 368999999999999999999998664322 3344333 35787
Q ss_pred EEEEEEEeeeeEeeeCCCCCccCcc---EEEechHHHHHHH--HHHHhcC
Q 018090 192 IVGEVQLVVNHCLLGLPGVLKEELK---RVFSHPQALAQCE--MTLSNLG 236 (361)
Q Consensus 192 IvgEi~lpI~h~Lla~~g~~l~~Ik---~VySHPqALaQC~--~fL~~~~ 236 (361)
.+|.+.+.- ..|.+.+-.+++|++ +|.----+-.|-| .+|.+.|
T Consensus 84 ~v~~~~~~p-~glyS~kiksl~dLk~Ga~IAipnd~sN~~RaL~lL~~aG 132 (252)
T 4ib2_A 84 DAGDIHYEP-FGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDNG 132 (252)
T ss_dssp EEEEEEECC-CEEEESSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEeeccccc-eEeecCCcCCHHHcCCCCEEEeeCCCCHHHHHHHHHHHCC
Confidence 777665443 566666556778887 5544333334443 4444444
No 143
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=35.87 E-value=89 Score=27.60 Aligned_cols=114 Identities=10% Similarity=0.033 Sum_probs=67.1
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik-- 216 (361)
+.++++.+ +.++++++.+|++|+++..+.- +.+. ...+... .-+......++++++. +++|++
T Consensus 98 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r--~~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk 165 (291)
T 2yjp_A 98 KVEFVLTE-AANRVEYVRSGKVDLILANFTQ--------TPER--AEAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQ 165 (291)
T ss_dssp GEEEEECC-GGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTS
T ss_pred eEEEEEcc-HHHHHHHHhCCCeeEEEeCCCC--------ChHH--Hccceec-cCeeecceEEEEeCCCCCCCHHHhCCC
Confidence 35677776 6899999999999988743221 1111 1122221 2233445667777653 344443
Q ss_pred EEEechHHHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 RVFSHPQALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|.. +..-.. ..+|.+. +.+++.+.+..++.+.+..+ .-.|++.....+..
T Consensus 166 ~v~~-~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 218 (291)
T 2yjp_A 166 TLLV-NKGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDG--RGVALAHDNALLWA 218 (291)
T ss_dssp EEEE-ETTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEE-ecCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcC--CccEEEecHHHHHH
Confidence 4543 222222 2345443 47788888999999998876 34677777665543
No 144
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=35.51 E-value=22 Score=32.12 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=46.3
Q ss_pred CCCcHHHHHHHHH------CCCCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-c-CCeEEEEEEEE
Q 018090 127 LPGAYSEAAARKA------YPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-R-HRLHIVGEVQL 198 (361)
Q Consensus 127 P~GTySe~AA~~~------f~~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~-~~L~IvgEi~l 198 (361)
..|++.+....+. ++..+++.+++.++++++|.+|++|+.+.. ..+++.+. + .++.++++..-
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d---------~~~~~~~~~~~~~l~~~~~~~~ 246 (292)
T 1pb7_A 176 VKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWD---------SAVLEFEASQKCDLVTTGELFF 246 (292)
T ss_dssp BTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEE---------HHHHHHHHHHCTTEEECSSCSE
T ss_pred EcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEc---------HHHHHHHHhcCCCEEEcCcccc
Confidence 3467666554431 122456788999999999999999987753 22333222 2 35777776544
Q ss_pred eeeeEeeeCCC
Q 018090 199 VVNHCLLGLPG 209 (361)
Q Consensus 199 pI~h~Lla~~g 209 (361)
+..+.++.+++
T Consensus 247 ~~~~~ia~~k~ 257 (292)
T 1pb7_A 247 RSGFGIGMRKD 257 (292)
T ss_dssp EEEECCEEETT
T ss_pred CCceEEEEeCC
Confidence 55566666655
No 145
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=34.95 E-value=35 Score=33.51 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=28.4
Q ss_pred ceEEEEEE-ecCCcchHHHHHHHHHHCCcccccee
Q 018090 307 YKTSIVFT-LEEGPGMLFKALAVFALRDINLTKIE 340 (361)
Q Consensus 307 ~KtSi~f~-~~~~PGaL~~iL~~Fa~~~INLtkIE 340 (361)
+-+.|.+. ++++||.+.++++.|+++|||...|-
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~ 297 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVL 297 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEE
Confidence 34555554 78999999999999999999999884
No 146
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=34.82 E-value=31 Score=33.09 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=31.7
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeeecCC
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQR 345 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESRP~~ 345 (361)
+..|.+.-+|+||-...+-+.++++|+|+..+...-..
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~ 49 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIR 49 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEET
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEEC
Confidence 34455566899999999999999999999999876544
No 147
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=34.79 E-value=53 Score=29.27 Aligned_cols=47 Identities=19% Similarity=0.016 Sum_probs=33.9
Q ss_pred cEEEEeCCCCcHHHHHHHHHCC--C-----CceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKAYP--K-----CETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~--~-----~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+|++ +.|+.++.....++. + .+++. .+..+++.++.+|++|.++++
T Consensus 106 k~i~~--~~gs~~~~~l~~~l~~~Gl~~~~v~~~~-~~~~~~~~al~~G~vDa~~~~ 159 (308)
T 2x26_A 106 HKVAF--QKGSSSHNLLLRALRQAGLKFTDIQPTY-LTPADARAAFQQGNVDAWAIW 159 (308)
T ss_dssp SEEEE--CTTSHHHHHHHHHHHHTTCCGGGSEEEE-CCHHHHHHHHHTTSSSEEEEE
T ss_pred CEEee--eCCCcHHHHHHHHHHHcCCCHHHeEEEe-cChHHHHHHHHcCCCCEEEec
Confidence 47998 468888876655442 1 23343 468999999999999998874
No 148
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=34.26 E-value=22 Score=30.66 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=24.8
Q ss_pred ecCCcchHHHHHHHHHHCCccccceeee
Q 018090 315 LEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 315 ~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
..+.||.+.++++.|++.|||+..|-+.
T Consensus 105 m~~~~Gv~arif~aLa~~~InI~~istS 132 (178)
T 2dtj_A 105 MKSHPGVTAEFMEALRDVNVNIELISTS 132 (178)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred cccCccHHHHHHHHHHHCCCCEEEEEcC
Confidence 4589999999999999999999998643
No 149
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=33.83 E-value=34 Score=33.64 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=29.4
Q ss_pred eEEEEEEecCCcchHHHHHHHHHHCCccccceeee
Q 018090 308 KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 308 KtSi~f~~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
...|++.-.|+||.+.++-+.|+++|||+......
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~ 365 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ 365 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhcc
Confidence 44577777799999999999999999999776543
No 150
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=33.03 E-value=1.8e+02 Score=26.68 Aligned_cols=143 Identities=11% Similarity=0.023 Sum_probs=75.8
Q ss_pred CccEEEEeCCCCcHHHHHH----HHH----CC-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcC
Q 018090 118 TKVRVAYQGLPGAYSEAAA----RKA----YP-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRH 188 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA----~~~----f~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~ 188 (361)
...+||++.-...+.-... .++ .+ ++++++..++.++++++.+|++|+++.. .. ..+....+.
T Consensus 4 ~~l~iG~~p~~~p~~~~~~~~~l~~~l~k~lG~~ve~~~~~~~~~~i~al~~G~vDi~~~~-------~~-~~~~~~~~~ 75 (310)
T 3n5l_A 4 PVINFGIISTESSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYG-------NK-AAMEAVDRA 75 (310)
T ss_dssp CEEEEEECCSSCHHHHHHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTSCSEEECC-------HH-HHHHHHHHS
T ss_pred cEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHcCCCCEEEEC-------cH-HHHHHHHhc
Confidence 4578999877666543221 111 22 3677888999999999999999999843 11 112222234
Q ss_pred CeEEEEEEE----Ee-eeeEeeeCCCC---CccCc----c--EEE-echHHH--HHH-HHHH-HhcCC------eEEecc
Q 018090 189 RLHIVGEVQ----LV-VNHCLLGLPGV---LKEEL----K--RVF-SHPQAL--AQC-EMTL-SNLGI------VRISAD 243 (361)
Q Consensus 189 ~L~IvgEi~----lp-I~h~Lla~~g~---~l~~I----k--~Vy-SHPqAL--aQC-~~fL-~~~~~------~~i~~~ 243 (361)
+..+..... .+ ....|+++++. +++|+ + +|. ..+-.- ... +.+| .+.++ +.++..
T Consensus 76 ~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g 155 (310)
T 3n5l_A 76 HGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNS 155 (310)
T ss_dssp CEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEEC
T ss_pred CCeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccC
Confidence 444443221 11 12356676654 44555 3 343 233211 111 2223 44443 345555
Q ss_pred CHHHHHHHHHhcCCCCeEEecCHhhHH
Q 018090 244 DTAGAAQMVASIGERDTGAVASAQAAE 270 (361)
Q Consensus 244 STA~AA~~va~~~~~~~AAIas~~AA~ 270 (361)
+...+...+..+. -.|++.+...+.
T Consensus 156 ~~~~~~~al~~G~--vDa~~~~~~~~~ 180 (310)
T 3n5l_A 156 SHEVNALAVANKQ--VDVATFNTEGME 180 (310)
T ss_dssp CHHHHHHHHHTTS--SSEEEEEHHHHH
T ss_pred CHHHHHHHHHcCC--ccEEEecchhHH
Confidence 6566777777653 345655554443
No 151
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=32.56 E-value=2.8e+02 Score=24.96 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=87.2
Q ss_pred CccEEEEeCCCCcHHHHHHHHHC------C----CCceeecC---------CHHHHHHHHHcCCcCeEEEeeecccccch
Q 018090 118 TKVRVAYQGLPGAYSEAAARKAY------P----KCETVPCD---------QFEAAFKAVELWLVDKAVLPIENSVGGSI 178 (361)
Q Consensus 118 ~~~rIAyLGP~GTySe~AA~~~f------~----~~e~vp~~---------sf~eVf~aV~~g~~d~gVVPIENS~~G~V 178 (361)
.++|||.. +|.-++.+...+- . +-+++... --.|+-.-|+.|.+|.||+
T Consensus 4 ~~L~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~R~l~~~~~~~i~~~~~R~~DIp~yV~~G~~DlGIt---------- 71 (206)
T 1ve4_A 4 FALTVALP--KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKEGGVALLELRNKDVPIYVDLGIAEIGVV---------- 71 (206)
T ss_dssp SSEEEEEE--CSTTHHHHHHHHHHTTCCCCCC-----CEECCTTSEEEEEECGGGHHHHHHTTSSSEEEE----------
T ss_pred ccEEEEEc--CcccHHHHHHHHHHcCCCCcCCCCCcceEecCCCCeEEEEECchhHHHHHhCCCccEEEe----------
Confidence 46789987 9999988875431 0 11122222 2368899999999999996
Q ss_pred HHhHHHHhcCCeEEEEEEEEeeeeE---eeeCCCC-CccCccEEEechHHHHHHHHHHHhcC--CeEEeccCHHHHHHHH
Q 018090 179 HRNYDLLLRHRLHIVGEVQLVVNHC---LLGLPGV-LKEELKRVFSHPQALAQCEMTLSNLG--IVRISADDTAGAAQMV 252 (361)
Q Consensus 179 ~~tlDlL~~~~L~IvgEi~lpI~h~---Lla~~g~-~l~~Ik~VySHPqALaQC~~fL~~~~--~~~i~~~STA~AA~~v 252 (361)
-.|.|.+++..+..-..|...+| +++.++. .+ -++|.+-.--+. ++|+++++ ++++..+..-|+|=.+
T Consensus 72 --G~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~--~~RIATkyp~l~--~~yf~~~gi~~~ii~l~GsvE~ap~~ 145 (206)
T 1ve4_A 72 --GKDVLLDSGRDLFEPVDLGFGACRLSLIRRPGDTGP--IRRVATKYPNFT--ARLLKERGWAADVVELSGNIELAAVT 145 (206)
T ss_dssp --EHHHHHHCCSCCEEEEECCCSCEEEEEEECTTCCSC--CCEEEESCHHHH--HHHHHHTTCCCEEEECSSCTHHHHHT
T ss_pred --eeeeeeecCCCeEEeeccccCcEEEEEEEECCcccC--CCEEEECchHHH--HHHHHHCCCcEEEEECCCceeeccCC
Confidence 36777777444444456655555 4444442 22 456776665554 78998875 6777777666665432
Q ss_pred HhcCCCC-eEE-ecCHhhHHHcCCceee
Q 018090 253 ASIGERD-TGA-VASAQAAEIYGLDILA 278 (361)
Q Consensus 253 a~~~~~~-~AA-Ias~~AA~~YgL~iLa 278 (361)
- ..+ .+= ..+-..-+.+||++++
T Consensus 146 G---lAD~IvDivsTG~TLraNgL~~ie 170 (206)
T 1ve4_A 146 G---LADAVVDVVQTGATLRAAGLVEVE 170 (206)
T ss_dssp T---SSSEEEEEESSSHHHHHTTCEEEE
T ss_pred C---CceEEEEeccCHHHHHHCCCEEeE
Confidence 1 111 222 2456667899999985
No 152
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=32.24 E-value=2.9e+02 Score=25.17 Aligned_cols=157 Identities=9% Similarity=0.039 Sum_probs=84.0
Q ss_pred CCccEEEEeCCCCcHHH-HHHHHHC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-cCCe
Q 018090 117 GTKVRVAYQGLPGAYSE-AAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHRL 190 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe-~AA~~~f---~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~~L 190 (361)
...++||+++-.+.+-. .....++ + ++++++. +-..+++++.+|++|+++--..+ .....++... +.++
T Consensus 6 ~~~I~ig~~~~~~~~~~~~i~~~~Le~~G~~Ve~~~~-~~~~~~~Al~~G~iD~~~~~w~~----~~~~~~~~~~~~~~l 80 (298)
T 2rin_A 6 CGTVRFSDVGWTDITATTATATTILEALGYETDVKVL-SVPVTYTSLKNKDIDVFLGNWMP----TMEADIAPYREDKSV 80 (298)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHHHHTCEEEEECC-CHHHHHHHHHHTSCCEEEEEEET----TTHHHHHHHHTTTSE
T ss_pred CCCEEEecCCCcHHHHHHHHHHHHHHHcCCceEEEEC-CcHHHHHHHHcCCcEEEhhhccC----chHHHHHHHhhCCCE
Confidence 44678888763221111 1111223 2 3566774 55778999999999998643333 1334555444 4678
Q ss_pred EEEEEEEEeeeeEeeeCC-----CC-CccCcc--------EEEechH---HHHHHHHHHH--hcCC---eEEeccCHHH-
Q 018090 191 HIVGEVQLVVNHCLLGLP-----GV-LKEELK--------RVFSHPQ---ALAQCEMTLS--NLGI---VRISADDTAG- 247 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~-----g~-~l~~Ik--------~VySHPq---ALaQC~~fL~--~~~~---~~i~~~STA~- 247 (361)
.+++.....-...|++++ |+ +++|++ +.+.-|. .......-|+ +++. +.+. .+++.
T Consensus 81 ~~l~~~~~~~~~~l~V~~~~ae~~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~-~~~~~~ 159 (298)
T 2rin_A 81 ETVRENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVE-SSEQGM 159 (298)
T ss_dssp EEEEEEEEEEEEEEEEEHHHHHHTCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEEC-CCHHHH
T ss_pred EEeccCCCCCeEEEEEchhHHhcCCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceecc-CCHHHH
Confidence 888877666567888765 43 566774 4544442 2333445565 4544 3443 23322
Q ss_pred --HHHHHHhcCCCCeEEe-cCHhhHHHcCCceeec
Q 018090 248 --AAQMVASIGERDTGAV-ASAQAAEIYGLDILAE 279 (361)
Q Consensus 248 --AA~~va~~~~~~~AAI-as~~AA~~YgL~iLa~ 279 (361)
++....+.+....+.+ .+--.-..|+|.+|..
T Consensus 160 ~a~~~~A~~~g~~~v~~~w~p~~~~~~~~l~~L~d 194 (298)
T 2rin_A 160 LAQVARAEKSGDPIVFLGWEPHPMNANFKLTYLSG 194 (298)
T ss_dssp HHHHHHHHHTTCCCEEEEEESSTHHHHSCEEECBS
T ss_pred HHHHHHHHHCCCCEEEEEeccCchhhcCCeeECCC
Confidence 1122222333444444 3333445688888754
No 153
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=32.06 E-value=55 Score=24.76 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=49.2
Q ss_pred EEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceEEEEEeeC
Q 018090 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILARE 297 (361)
Q Consensus 218 VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TRFlvl~r~ 297 (361)
|=.++......+++|.+.+.....+.|..+|.+.+.+.. + ...|.........|++++..=-+....+.+.+++++..
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~ 89 (132)
T 3lte_A 12 VDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE-P-AIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGL 89 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC-C-SEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCS
T ss_pred EECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC-C-CEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCC
Confidence 445777888888999888888888888888888887653 3 34444433334445555543222223355677766654
No 154
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=30.60 E-value=2.5e+02 Score=24.38 Aligned_cols=114 Identities=9% Similarity=0.010 Sum_probs=65.3
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc--
Q 018090 142 KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK-- 216 (361)
Q Consensus 142 ~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik-- 216 (361)
+.++++.+ +.++++++.+|++|.++-++. ..... ...+... .-++.....++++++. +++|++
T Consensus 87 ~~~~~~~~-~~~~~~~l~~G~~D~~~~~~~------~~~~r----~~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 154 (292)
T 1xt8_A 87 KVQFVLVE-AANRVEFLKSNKVDIILANFT------QTPQR----AEQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDK 154 (292)
T ss_dssp CEEEEECC-GGGHHHHHHTTSCSEECSSCB------CCHHH----HTTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTS
T ss_pred eEEEEEcC-HHHHHHHHhCCCeeEEeecCC------CCcch----hcceeee-ccceecceEEEEECCCCCCCHHHhCCC
Confidence 45777775 689999999999998753221 11111 1112111 1223344566666553 344542
Q ss_pred EEEechHHHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 217 RVFSHPQALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
+|..-. .... ..++.+. +...+.+.|..++.+.+..+. -.|++.....+..
T Consensus 155 ~i~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~~~~~~~~~~ 207 (292)
T 1xt8_A 155 TLLLNK-GTTA-DAYFTQNYPNIKTLKYDQNTETFAALMDKR--GDALSHDNTLLFA 207 (292)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEeC-CCcH-HHHHHHhCCCceEEEcCCHHHHHHHHHcCC--ccEEEecHHHHHH
Confidence 454322 2222 3455543 477888899999999988763 4677777665543
No 155
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=30.52 E-value=3.4e+02 Score=25.32 Aligned_cols=176 Identities=9% Similarity=-0.056 Sum_probs=105.7
Q ss_pred CCCccEEEEeCCCCcHHHHHHHHHC--------CCCc--eeec---CCHHHHHHHHHc------CCcCeEEEeee-----
Q 018090 116 DGTKVRVAYQGLPGAYSEAAARKAY--------PKCE--TVPC---DQFEAAFKAVEL------WLVDKAVLPIE----- 171 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTySe~AA~~~f--------~~~e--~vp~---~sf~eVf~aV~~------g~~d~gVVPIE----- 171 (361)
.....|++..-|+|+..+.++.+|. +..+ +.|- -+-.+++++|.. |.+|.+++..-
T Consensus 8 ~~~~lk~a~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~p~g~Lg~~~e~~~~v~~~~~~~~G~id~~~~~~~~~~~~ 87 (328)
T 3u65_B 8 EKVVLKIASIAPARSIWETELKKLSAEWSEITGGLVSMKFYDMSSLGGEREGIRKLKSSRPGQAAPLDGAVFSCLGLSEL 87 (328)
T ss_dssp -CEEEEEEECSCTTSHHHHHHHHHHHHHHHHTTTCEEEEEEEHHHHTCHHHHHHHTSCSSTTSCCSCSEEEECHHHHHHH
T ss_pred cceEEEEeccCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCcCCHHHHHHHHhhhccCCCCceeEEEeccHhhhhh
Confidence 4456899999999999998887653 2233 3332 246899999999 99999987421
Q ss_pred ------ccccc--------chHHhH--------HHHhcCCeEEEEEEEEeeeeEeeeCCCCCccCcc--EEEechHHHHH
Q 018090 172 ------NSVGG--------SIHRNY--------DLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELK--RVFSHPQALAQ 227 (361)
Q Consensus 172 ------NS~~G--------~V~~tl--------DlL~~~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik--~VySHPqALaQ 227 (361)
+...- .+...+ +.+.+.++++.+-......|..-.+|=.+++|++ +|...+..-.-
T Consensus 88 ~P~~~~~v~~lPflf~~~~~~~~~~~~~~~~l~~~~~~~g~~~L~~~~~G~r~~~s~kpI~s~~DlkGlKiR~~~~~s~~ 167 (328)
T 3u65_B 88 APDSGIYTLSVPFLIQNEKDLERVLHELREDLDRPFRAAGFRVITWTNAGWLSFYTRAPYASLGQLKKQTIALSSLDSSV 167 (328)
T ss_dssp STTCCBGGGGSTTTSCSHHHHHHHHHHTHHHHHHHHHHTTEEEEEEEEEEEEEEEESSCCSSHHHHHHSEEEECSTTHHH
T ss_pred CChhhhhheeCCeecCCHHHHHHHHHHHHHHHHHHHHHCCeEEEEeecCCceEEEeCCCCCCHHHHCCCEEEECCCCChH
Confidence 11100 011111 1223468888887666666543223333667776 67762211112
Q ss_pred HHHHHHhcCCeEEe--ccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceEEEEEee
Q 018090 228 CEMTLSNLGIVRIS--ADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296 (361)
Q Consensus 228 C~~fL~~~~~~~i~--~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TRFlvl~r 296 (361)
-.++++.+|+..++ ....-.|.+. + --.++..+.....-+++.=+++.+....+.++=+.++-.
T Consensus 168 ~~~~~~alGa~pv~m~~~Evy~ALq~---G--vvDg~e~~~~~~~~~~~~Ev~ky~~~~~h~~~~~~~~~n 233 (328)
T 3u65_B 168 LGTCFRICGFDIKDAPNARLAPLLKA---G--SIDGFLSVHLFTWATGFYRYISYALDTKICPAVIGMLIS 233 (328)
T ss_dssp HHHHHHHHTCEEEECTTCCHHHHHHH---T--SCCEEEECHHHHHHSCGGGGCCEEECSCCEEEEEEEEEE
T ss_pred HHHHHHHCCCeeeecCHHHHHHHHHc---C--ccceEecCHHHHHHcchhhcCcEEEEcCccccceEEEEc
Confidence 25677778876544 4555555553 2 245777777777777877777777666666665544443
No 156
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=29.24 E-value=4.6 Score=40.10 Aligned_cols=32 Identities=6% Similarity=0.055 Sum_probs=27.9
Q ss_pred CCCCCCCcccc--hhhhhcccccccccccccCCc
Q 018090 61 DDRPYTPDVQS--SEANERSQDSQSSGFHKDLNL 92 (361)
Q Consensus 61 ~~~~~~p~~~~--~~~~~~~~~~~~~~~~~d~~~ 92 (361)
=|+-|.|++++ +|+.+||.|++|..|++++..
T Consensus 245 IEkHftldra~~G~D~~~SL~P~ef~~lv~~ir~ 278 (385)
T 1vli_A 245 IEKHFTIDKNLPGADHSFALNPDELKEMVDGIRK 278 (385)
T ss_dssp EEEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHH
T ss_pred EEeCCCccccCCCCchhhhCCHHHHHHHHHHHHH
Confidence 35668899998 999999999999999998843
No 157
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.16 E-value=43 Score=25.28 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=62.8
Q ss_pred EEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCC-CCCceEEEEEee
Q 018090 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLILAR 296 (361)
Q Consensus 218 VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~-~~N~TRFlvl~r 296 (361)
|=.++......+++|.+.+.....+.|..+|.+.+.+.. + ...|.........|++++.. |... ....+.+++++.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlii~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 9 VEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG-Y-DAVFIDLNLPDTSGLALVKQ-LRALPMEKTSKFVAVSG 85 (127)
T ss_dssp ECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC-C-SEEEEESBCSSSBHHHHHHH-HHHSCCSSCCEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC-C-CEEEEeCCCCCCCHHHHHHH-HHhhhccCCCCEEEEEC
Confidence 335677788888999888888888888888888887653 3 34444333334445555443 3322 356678888876
Q ss_pred CCCCCCCCCC--ceEEEEEEecCCcchHHHHHHHHH
Q 018090 297 EPIIAGTDRP--YKTSIVFTLEEGPGMLFKALAVFA 330 (361)
Q Consensus 297 ~~~~~~~~~~--~KtSi~f~~~~~PGaL~~iL~~Fa 330 (361)
...... ... .-..-++.-|-.+..|...++...
T Consensus 86 ~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 86 FAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp C-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred CcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 543211 100 001113444555666766666543
No 158
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=29.02 E-value=3e+02 Score=24.18 Aligned_cols=139 Identities=14% Similarity=0.057 Sum_probs=70.8
Q ss_pred ccEEEEeCCCCc-HHHHHHH---HHCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEE
Q 018090 119 KVRVAYQGLPGA-YSEAAAR---KAYPKCETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIV 193 (361)
Q Consensus 119 ~~rIAyLGP~GT-ySe~AA~---~~f~~~e~vp-~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~Iv 193 (361)
..+|++...-+. +--.... +.+|++++.. ..+..++.+.+.+|++|+|++.......| +.. ..+.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~--------l~~--~~L~ 160 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPA--------IKH--SLLR 160 (312)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTT--------EEE--EEEE
T ss_pred eEEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCC--------ceE--EEee
Confidence 677877654332 1122222 2357766543 34578899999999999999853321111 100 0111
Q ss_pred E-E--EEEeeeeEeee-CCC-CCccCcc---EEEec----hHHHHHHHHHHHhcCC---eEEeccCHHHHHHHHHhcCCC
Q 018090 194 G-E--VQLVVNHCLLG-LPG-VLKEELK---RVFSH----PQALAQCEMTLSNLGI---VRISADDTAGAAQMVASIGER 258 (361)
Q Consensus 194 g-E--i~lpI~h~Lla-~~g-~~l~~Ik---~VySH----PqALaQC~~fL~~~~~---~~i~~~STA~AA~~va~~~~~ 258 (361)
. + +..+-.|-|.. ... .+++|+. -|.-. +....+..+++.+.+. ....++|...+.++|..+
T Consensus 161 ~~~~~~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g--- 237 (312)
T 2h9b_A 161 NERLMVAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAG--- 237 (312)
T ss_dssp EEEEEEEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTT---
T ss_pred cceEEEEEcCCCccccccCCCCCHHHHcCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcC---
Confidence 1 1 12233344433 222 3445543 34321 1223455667766553 345667777777777764
Q ss_pred CeEEecCHhhHH
Q 018090 259 DTGAVASAQAAE 270 (361)
Q Consensus 259 ~~AAIas~~AA~ 270 (361)
...|+.+...++
T Consensus 238 ~Gia~lp~~~~~ 249 (312)
T 2h9b_A 238 EGISLVPASTQS 249 (312)
T ss_dssp SCBEEEEGGGGG
T ss_pred CcEEEecchhhh
Confidence 235666666543
No 159
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=28.82 E-value=98 Score=26.91 Aligned_cols=142 Identities=14% Similarity=0.072 Sum_probs=68.1
Q ss_pred CCCccEEEEeCCCCcHH-HHHHH---HHCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHh-cCC
Q 018090 116 DGTKVRVAYQGLPGAYS-EAAAR---KAYPKCETVP-CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL-RHR 189 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTyS-e~AA~---~~f~~~e~vp-~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~~ 189 (361)
..+..+|+....-+.+- -.... +.+|+.++.. ..+-.++.+.+.+|++|+|++.-...-.+.. ...|. +..
T Consensus 93 ~~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~---~~~l~~~~~ 169 (306)
T 3fzv_A 93 IAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIE---TEPLMPPQR 169 (306)
T ss_dssp CCEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEE---EEESSCCBC
T ss_pred CCceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccc---eeeeeeccc
Confidence 34567888864433221 11112 2357655432 3466788999999999999986332211100 00111 111
Q ss_pred eEEEEEEEEeeeeEeeeCCCCCccCc---cEEEe-chHHHHHHHHHHHhcCC---eEEeccCHHHHHHHHHhcCCCCeEE
Q 018090 190 LHIVGEVQLVVNHCLLGLPGVLKEEL---KRVFS-HPQALAQCEMTLSNLGI---VRISADDTAGAAQMVASIGERDTGA 262 (361)
Q Consensus 190 L~IvgEi~lpI~h~Lla~~g~~l~~I---k~VyS-HPqALaQC~~fL~~~~~---~~i~~~STA~AA~~va~~~~~~~AA 262 (361)
+. +.++-.|-|...+..+++++ .-|.- .+..-....+++.+.+. ....++|...+..+|..+ ...|
T Consensus 170 ~~----~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia 242 (306)
T 3fzv_A 170 PH----ALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQG---FGFS 242 (306)
T ss_dssp CE----EEEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTT---SCBE
T ss_pred cE----EEecCCCcccCCCCCCHHHHcCCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC---CCEE
Confidence 11 12333444433222233333 33432 22223444556666542 235567777777777664 2344
Q ss_pred ecCHh
Q 018090 263 VASAQ 267 (361)
Q Consensus 263 Ias~~ 267 (361)
|.+..
T Consensus 243 ~lp~~ 247 (306)
T 3fzv_A 243 LLVTR 247 (306)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 44443
No 160
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.22 E-value=76 Score=24.48 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=65.6
Q ss_pred EEechHHHHHHHHHHHhcCCe--EEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceEEEEEe
Q 018090 218 VFSHPQALAQCEMTLSNLGIV--RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILA 295 (361)
Q Consensus 218 VySHPqALaQC~~fL~~~~~~--~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TRFlvl~ 295 (361)
|=.++......+.+|.+.+.. ...+.|..+|.+.+.+. .+ ...|.........|++++..=-+......+.+++++
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-~~-dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 11 VEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA-KY-DLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC-CC-SEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC-CC-CEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 445778888889999887755 67778888888877654 23 455555555556677666542222244568889888
Q ss_pred eCCCCCC-----CCCCceEEEEEEecC-CcchHHHHHHHHHH
Q 018090 296 REPIIAG-----TDRPYKTSIVFTLEE-GPGMLFKALAVFAL 331 (361)
Q Consensus 296 r~~~~~~-----~~~~~KtSi~f~~~~-~PGaL~~iL~~Fa~ 331 (361)
....... ..+ ..-++.-|- .+..|...|...-.
T Consensus 89 ~~~~~~~~~~~~~~g---a~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 89 DNVSDDRAKQCMAAG---ASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTCCHHHHHHHHHTT---CSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcC---CCEEEECCCCcHHHHHHHHHHHHH
Confidence 6532110 011 122344344 67777777765543
No 161
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=28.09 E-value=2.5e+02 Score=23.13 Aligned_cols=144 Identities=14% Similarity=-0.011 Sum_probs=72.8
Q ss_pred CCCccEEEEeCCCCcH-HHHHHH---HHCCCCcee-ecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCe
Q 018090 116 DGTKVRVAYQGLPGAY-SEAAAR---KAYPKCETV-PCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRL 190 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTy-Se~AA~---~~f~~~e~v-p~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L 190 (361)
..+..+||+...-+.+ --.... +.+|+.++. -..+-.++.+.+.+|++|+|++...... .+
T Consensus 17 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~-------------~~- 82 (241)
T 3oxn_A 17 CDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPV-------------EP- 82 (241)
T ss_dssp CCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCC-------------TT-
T ss_pred CCceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCC-------------cc-
Confidence 4566788876432221 111111 235776653 2345678899999999999998532111 11
Q ss_pred EEEEEEEEeeeeEeeeCCC-------CCccCcc---EEEech--HHHHHHHHHHHhc-CCe-EEeccCHHHHHHHHHhcC
Q 018090 191 HIVGEVQLVVNHCLLGLPG-------VLKEELK---RVFSHP--QALAQCEMTLSNL-GIV-RISADDTAGAAQMVASIG 256 (361)
Q Consensus 191 ~IvgEi~lpI~h~Lla~~g-------~~l~~Ik---~VySHP--qALaQC~~fL~~~-~~~-~i~~~STA~AA~~va~~~ 256 (361)
+..+.......++++.++ .+++++. -|.-.+ ....+..+++.+. ... ...++|...+..+|+.+
T Consensus 83 -~~~~~l~~~~~~~v~~~~hpl~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g- 160 (241)
T 3oxn_A 83 -LRSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALAIVDTL- 160 (241)
T ss_dssp -EEEEEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--C-
T ss_pred -ceeEEeecccEEEEEeCCCCcccCCCCHHHHhcCCeEEEecCCCccchhHHHHHhhccceEEEECCcHHHHHHHHhCC-
Confidence 222333344444444333 3333332 232221 1123344444443 112 34667777777777764
Q ss_pred CCCeEEecCHhhHHH----cCCcee
Q 018090 257 ERDTGAVASAQAAEI----YGLDIL 277 (361)
Q Consensus 257 ~~~~AAIas~~AA~~----YgL~iL 277 (361)
...||.+...+.. .+|.++
T Consensus 161 --~giailp~~~~~~~~~~~~l~~~ 183 (241)
T 3oxn_A 161 --PIIITVPADLAYLVAERYDLVVK 183 (241)
T ss_dssp --CCEEEEEHHHHHHHHHHTTEEEE
T ss_pred --CeEEEcHHHHHHHhcccCCceEe
Confidence 3467777777664 355554
No 162
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=27.88 E-value=52 Score=34.11 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=29.6
Q ss_pred ceEEEEE-EecCCcchHHHHHHHHHHCCccccceeee
Q 018090 307 YKTSIVF-TLEEGPGMLFKALAVFALRDINLTKIESR 342 (361)
Q Consensus 307 ~KtSi~f-~~~~~PGaL~~iL~~Fa~~~INLtkIESR 342 (361)
+.+.|.+ .++++||...++++.|+++|||.-.|..-
T Consensus 443 ~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~ 479 (600)
T 3l76_A 443 DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQS 479 (600)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence 4455555 57899999999999999999999988543
No 163
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.48 E-value=47 Score=25.54 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=65.3
Q ss_pred EEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCC-CCCceEEEEEee
Q 018090 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLILAR 296 (361)
Q Consensus 218 VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~-~~N~TRFlvl~r 296 (361)
|=.++......+.+|.+.++....+.|..+|.+.+.+.. + ...|.........|++++.. |... ....+.+++++.
T Consensus 12 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~-~-dlvi~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 12 CEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP-Y-AAMTVDLNLPDQDGVSLIRA-LRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC-C-SEEEECSCCSSSCHHHHHHH-HHTSGGGTTCEEEEECT
T ss_pred EcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC-C-CEEEEeCCCCCCCHHHHHHH-HHhCcccCCCCEEEEec
Confidence 445777788889999888888888888888888887653 3 44554444344455555543 3332 345688999876
Q ss_pred CCCC---C-CCCCCceEEEEEEecCCcchHHHHHHHHHH
Q 018090 297 EPII---A-GTDRPYKTSIVFTLEEGPGMLFKALAVFAL 331 (361)
Q Consensus 297 ~~~~---~-~~~~~~KtSi~f~~~~~PGaL~~iL~~Fa~ 331 (361)
.... . ..- ..-..=++.-|-.+..|...|...-.
T Consensus 89 ~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 89 NAREGELEFNSQ-PLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp THHHHHHHHCCT-TTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHhh-hcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5211 0 100 01122234445567777777765543
No 164
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.37 E-value=1.7e+02 Score=22.18 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=59.6
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHh-cCCCCeEEecCHhhHHHcCCceeeccccCCCCCceEEEEEe
Q 018090 217 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVAS-IGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILA 295 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~-~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TRFlvl~ 295 (361)
-|=.++......+..|.+.++....+.+..+|.+.+.+ . .+ ...|.........|++++. .|.. ....+.+++++
T Consensus 20 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~-~~-dlvilD~~l~~~~g~~~~~-~l~~-~~~~~~ii~ls 95 (138)
T 2b4a_A 20 LVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS-TC-DLLIVSDQLVDLSIFSLLD-IVKE-QTKQPSVLILT 95 (138)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG-SC-SEEEEETTCTTSCHHHHHH-HHTT-SSSCCEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC-CC-CEEEEeCCCCCCCHHHHHH-HHHh-hCCCCCEEEEE
Confidence 34457777888889998878887878888888877765 3 23 3444433333344555443 3332 23468899998
Q ss_pred -eCCCCCCCCCCceEEEEEEecCCcchHHHHHHH
Q 018090 296 -REPIIAGTDRPYKTSIVFTLEEGPGMLFKALAV 328 (361)
Q Consensus 296 -r~~~~~~~~~~~KtSi~f~~~~~PGaL~~iL~~ 328 (361)
....... .... ..-++.-|-.+..|...|..
T Consensus 96 ~~~~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~ 127 (138)
T 2b4a_A 96 TGRHELIE-SSEH-NLSYLQKPFAISELRAAIDY 127 (138)
T ss_dssp SCC--CCC-CSSS-CEEEEESSCCHHHHHHHHHH
T ss_pred CCCCCHHH-HHHH-HHheeeCCCCHHHHHHHHHH
Confidence 6533221 1112 22233334456666666654
No 165
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=27.00 E-value=53 Score=24.88 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=48.9
Q ss_pred EechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCC-CCCceEEEEEeeC
Q 018090 219 FSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLILARE 297 (361)
Q Consensus 219 ySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~-~~N~TRFlvl~r~ 297 (361)
=.+|......+.+|.+.+.+...+.|..+|.+.+.+. .+ ...|.--......|++++.. |... ....+.+++++..
T Consensus 9 dd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~-~~-dlvllD~~~p~~~g~~~~~~-l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 9 DDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF-TP-DLIVLXIMMPVMDGFTVLKK-LQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB-CC-SEEEECSCCSSSCHHHHHHH-HHTSTTTTTSCEEEEESC
T ss_pred eCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-CC-CEEEEeccCCCCcHHHHHHH-HHhcccccCCCEEEEecC
Confidence 3577777888889988888888888888888877654 23 34554433334456665543 3222 2345778888754
No 166
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=26.81 E-value=3e+02 Score=24.74 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=84.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHCC----------C-Cceee---------cCCHHHHHHHHHcCCcCeEEEeeecccccchH
Q 018090 120 VRVAYQGLPGAYSEAAARKAYP----------K-CETVP---------CDQFEAAFKAVELWLVDKAVLPIENSVGGSIH 179 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~----------~-~e~vp---------~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~ 179 (361)
+|||.. +|.-++.+...+-. + -+++. +-.-.|+-.-|+.|.+|.||+
T Consensus 2 L~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~~i~~~~~R~~DIp~yV~~G~~DlGIt----------- 68 (208)
T 1z7m_E 2 IKIAIT--KGRIQKQVTKLLENADYDVEPILNLGRELQIKTKDDLQIIFGKPNDVITFLEHGIVDIGFV----------- 68 (208)
T ss_dssp CCEEEE--TTHHHHHHHHHHHTTTCCCCCC----CCSEECCTTSCCEEEECHHHHHHHHHTTSCSEEEE-----------
T ss_pred EEEEEc--cchhHHHHHHHHHHcCCCcccCCCCCcceEeecCCCEEEEEECchhHHHHHhCCCccEEEe-----------
Confidence 567776 89998887654310 0 11111 223579999999999999996
Q ss_pred HhHHHHhcCCe-EEEEEEEEeeeeE---eeeCCCCC-ccCc--cEEEechHHHHHHHHHHHhcC--CeEEeccCHHHHHH
Q 018090 180 RNYDLLLRHRL-HIVGEVQLVVNHC---LLGLPGVL-KEEL--KRVFSHPQALAQCEMTLSNLG--IVRISADDTAGAAQ 250 (361)
Q Consensus 180 ~tlDlL~~~~L-~IvgEi~lpI~h~---Lla~~g~~-l~~I--k~VySHPqALaQC~~fL~~~~--~~~i~~~STA~AA~ 250 (361)
-.|.|.++.. .+..-..|...+| +++.++.. .++. ++|.+-.--+. ++|+++++ ++++..+..-|+|=
T Consensus 69 -G~D~l~E~~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~~~RIATkyp~l~--~~yf~~~gi~~~ii~l~GsvE~ap 145 (208)
T 1z7m_E 69 -GKDTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYPRVT--KKYFAQKQEDIEIIKLEGSVELGP 145 (208)
T ss_dssp -EHHHHHHSSCCCEEEEEEETTCCCEEEEEECGGGGGCCCSSCEEEEESCHHHH--HHHHHHTTCCEEEEECSSCTTHHH
T ss_pred -eeeeeeecCCCCeEEeeccccCCEEEEEEEECCCccchhcCCCEEEECchHHH--HHHHHHcCCceEEEECCCceeecc
Confidence 3677777643 3555556655555 44444311 2332 46776665554 78999876 45666665555553
Q ss_pred HHHhcCCCC-eEEe-cCHhhHHHcCCceee
Q 018090 251 MVASIGERD-TGAV-ASAQAAEIYGLDILA 278 (361)
Q Consensus 251 ~va~~~~~~-~AAI-as~~AA~~YgL~iLa 278 (361)
.+ +..+ .+=| .+-..-+.+||++++
T Consensus 146 ~~---GlAD~IvDivsTG~TLr~NgL~~ie 172 (208)
T 1z7m_E 146 VV---GLADAIVDIVETGNTLSANGLEVIE 172 (208)
T ss_dssp HT---TSCSEEEEEESSSHHHHTTTCEEEE
T ss_pred CC---CcccEEEEEeCChHHHHHCCCEEeE
Confidence 32 1111 1222 456667899999985
No 167
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.26 E-value=93 Score=23.39 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=59.5
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceEEEEEee
Q 018090 217 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TRFlvl~r 296 (361)
-|=.++......+++|.+.+.....+.|..+|.+.+.+.. + ...|..-......|++++.. |... ...+.+++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlvi~d~~l~~~~g~~~~~~-l~~~-~~~~~ii~~t~ 87 (130)
T 3eod_A 12 IVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-P-DLMICDIAMPRMNGLKLLEH-IRNR-GDQTPVLVISA 87 (130)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC-C-SEEEECCC-----CHHHHHH-HHHT-TCCCCEEEEEC
T ss_pred EEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC-C-CEEEEecCCCCCCHHHHHHH-HHhc-CCCCCEEEEEc
Confidence 3445777788888999888888888888888888876542 3 45555555455667776653 3222 23567888876
Q ss_pred CCCCCCCCC--CceEEEEEEec-CCcchHHHHHHHHH
Q 018090 297 EPIIAGTDR--PYKTSIVFTLE-EGPGMLFKALAVFA 330 (361)
Q Consensus 297 ~~~~~~~~~--~~KtSi~f~~~-~~PGaL~~iL~~Fa 330 (361)
......... ..-..=++.-| +.+..|..++....
T Consensus 88 ~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 88 TENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp CCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 532110000 00011123333 36777777776554
No 168
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=25.87 E-value=57 Score=28.29 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.0
Q ss_pred eEEEE-EEecCCcchHHHHHHHHHHCCcccccee
Q 018090 308 KTSIV-FTLEEGPGMLFKALAVFALRDINLTKIE 340 (361)
Q Consensus 308 KtSi~-f~~~~~PGaL~~iL~~Fa~~~INLtkIE 340 (361)
|.|++ -...+.||.+.++++.+++.|||+..|-
T Consensus 98 ~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 98 KVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 44444 2356899999999999999999998886
No 169
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=25.59 E-value=2.5e+02 Score=22.30 Aligned_cols=137 Identities=15% Similarity=-0.016 Sum_probs=73.0
Q ss_pred CCccEEEEeCCCCcHH-HHHH---HHHCCCCceeec-CCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeE
Q 018090 117 GTKVRVAYQGLPGAYS-EAAA---RKAYPKCETVPC-DQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLH 191 (361)
Q Consensus 117 ~~~~rIAyLGP~GTyS-e~AA---~~~f~~~e~vp~-~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~ 191 (361)
.+..+||+...-+.+- -... .+.+|+.++... .+..++.+.+.+|++|+|++.-.... .+
T Consensus 3 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~~-------------~~-- 67 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQE-------------PG-- 67 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCCC-------------TT--
T ss_pred CCcEEEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCCCCC-------------CC--
Confidence 4567888875543331 1111 223677765443 46778999999999999998743211 11
Q ss_pred EEEEEEEeeeeEeeeCC--------CCCccCcc---EEEech--HHHHHHHHHHHh-----c---CCeEEeccCHHHHHH
Q 018090 192 IVGEVQLVVNHCLLGLP--------GVLKEELK---RVFSHP--QALAQCEMTLSN-----L---GIVRISADDTAGAAQ 250 (361)
Q Consensus 192 IvgEi~lpI~h~Lla~~--------g~~l~~Ik---~VySHP--qALaQC~~fL~~-----~---~~~~i~~~STA~AA~ 250 (361)
+..+.......++++.+ ..+++++. -|...+ .-..+..+++.+ . .-....++|...+.+
T Consensus 68 ~~~~~l~~~~~~~v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T 3jv9_A 68 IVTEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRH 147 (219)
T ss_dssp EEEEEEEEEEEEEEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHH
T ss_pred eeEEEeeeceEEEEEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHH
Confidence 12222233334444433 23444443 343322 222344555533 2 122356777777788
Q ss_pred HHHhcCCCCeEEecCHhhHHH
Q 018090 251 MVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 251 ~va~~~~~~~AAIas~~AA~~ 271 (361)
+|..+ ...||.+...+..
T Consensus 148 ~v~~g---~gi~~~p~~~~~~ 165 (219)
T 3jv9_A 148 MVASG---LAISVLPATALTE 165 (219)
T ss_dssp HHHHT---SCEEEEEGGGCCT
T ss_pred HHHcC---CcEEehhHHHHHh
Confidence 88775 3467767766543
No 170
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=25.26 E-value=1.2e+02 Score=27.66 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=39.2
Q ss_pred cEEEEeCCCCcHHHHHHHHH-CCCCceeec-CCHHHHHHHHHcCCcCeEEE
Q 018090 120 VRVAYQGLPGAYSEAAARKA-YPKCETVPC-DQFEAAFKAVELWLVDKAVL 168 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~-f~~~e~vp~-~sf~eVf~aV~~g~~d~gVV 168 (361)
+|||++ .||.-+..+.+. +++.++..+ .+..+++.++.+|++|.+|.
T Consensus 113 krVGvd--~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iw 161 (231)
T 2ozz_A 113 KRVGLD--SRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIW 161 (231)
T ss_dssp CEEEEC--TTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTSCCEEEE
T ss_pred EEEEec--CCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCCccEEEE
Confidence 799998 699988887664 455565566 78999999999999999998
No 171
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=24.72 E-value=3.3e+02 Score=23.36 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=65.5
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCCC---ccCcc--E
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVL---KEELK--R 217 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~---l~~Ik--~ 217 (361)
.++++. ++.+++.++.+|++|.++-.+- .+-+. ...+... .-++.....++++++.. ++|++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~t~~r--~~~~~~s-~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGSTT--------NNVER--QKQAAFS-DTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCB--------CCHHH--HTTCEEE-EEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEecccc--------CCcch--hhccccc-ceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 567777 4688999999999997752211 11111 1122222 33455556777776643 34442 4
Q ss_pred EEechH--HHHHHHHHHHhc--CCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHH
Q 018090 218 VFSHPQ--ALAQCEMTLSNL--GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEI 271 (361)
Q Consensus 218 VySHPq--ALaQC~~fL~~~--~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~ 271 (361)
|..-.- ......+++... +.+.+.+.|..++.+.+..+. -.|+|.+...+..
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~i~~~~~~~~ 188 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR--AVAFMMDDALLAG 188 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC--eeEEEeChHHHHH
Confidence 433211 112223333332 477888999999999998763 4577777665543
No 172
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=24.60 E-value=3.8e+02 Score=24.00 Aligned_cols=46 Identities=15% Similarity=-0.041 Sum_probs=33.9
Q ss_pred cEEEEeCCCCcHHHHHHHHH---CC---CCceeecCCHHHHHHHHHcC----CcCeE
Q 018090 120 VRVAYQGLPGAYSEAAARKA---YP---KCETVPCDQFEAAFKAVELW----LVDKA 166 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~---f~---~~e~vp~~sf~eVf~aV~~g----~~d~g 166 (361)
+|||+.+ .||-++.....+ .+ +.+++++.++.+++.++.+| ++|..
T Consensus 119 K~i~~~~-~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~ 174 (321)
T 2x7q_A 119 KRIGVSR-IGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAF 174 (321)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEE
T ss_pred ceEEeeC-CCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEE
Confidence 5899987 466666543221 22 25788998999999999999 99974
No 173
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=24.24 E-value=2.7e+02 Score=25.29 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=54.1
Q ss_pred CCCccEEEEeCCCCcH--HHHHHHHHC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCC
Q 018090 116 DGTKVRVAYQGLPGAY--SEAAARKAY---P-KCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHR 189 (361)
Q Consensus 116 ~~~~~rIAyLGP~GTy--Se~AA~~~f---~-~~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~ 189 (361)
....++||+.+=.+.. ++.++ +.+ | +++..+..+ .-.++++.+|++|..+ |+-+.-.-...++.+ +.+
T Consensus 163 ~~~~I~ig~~~w~e~~~~~~v~~-~~Le~~Gy~Ve~~~~~~-~~~~~al~~G~iD~~~---e~w~~~~~~~~~~~~-~~~ 236 (268)
T 2b4l_A 163 KGDKINLAYVAWDSEIASTNVIG-KVLEDLGYEVTLTQVEA-GPMWTAIATGSADASL---SAWLPNTHKAYAAKY-KGK 236 (268)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHH-HHHHHHTCEEEEEECCT-THHHHHHHHTSSSEEE---EEEETTTTHHHHHHT-TTS
T ss_pred cCcceEEEccCccHHHHHHHHHH-HHHHHcCCceEEEECCh-HHHHHHHHCCCCeEEe---hhhcCcCcHHHHHHH-cCC
Confidence 4557889998632211 12222 222 2 356777766 7789999999999873 221111122344444 667
Q ss_pred eEEEEEEEEeeeeEeeeCCCC
Q 018090 190 LHIVGEVQLVVNHCLLGLPGV 210 (361)
Q Consensus 190 L~IvgEi~lpI~h~Lla~~g~ 210 (361)
+.+.+.....-...|++++.+
T Consensus 237 ~~~l~~~~~~~~~~l~Vp~~~ 257 (268)
T 2b4l_A 237 YDDIGTSMTGVKMGLVVPQYM 257 (268)
T ss_dssp EEEEEEEEEEEEEEEEEETTC
T ss_pred eEEccCCCCCCeEEEEEehhh
Confidence 999998876667888876543
No 174
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.75 E-value=54 Score=23.73 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=46.7
Q ss_pred EEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCC-CCCceEEEEEee
Q 018090 218 VFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLILAR 296 (361)
Q Consensus 218 VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~-~~N~TRFlvl~r 296 (361)
|=.++....+.+..|...+++...+.+..+|.+.+.+.. ++ ..|.........|++++.. |... ....+.+++++.
T Consensus 7 v~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~-~d-lii~d~~~~~~~~~~~~~~-l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 7 LEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ-PI-VILMAWPPPDQSCLLLLQH-LREHQADPHPPLVLFLG 83 (119)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC-CS-EEEEECSTTCCTHHHHHHH-HHHTCCCSSCCCEEEES
T ss_pred EeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC-CC-EEEEecCCCCCCHHHHHHH-HHhccccCCCCEEEEeC
Confidence 335677778888888888888888888888888777652 33 4443322222334444332 3222 224567777776
Q ss_pred CC
Q 018090 297 EP 298 (361)
Q Consensus 297 ~~ 298 (361)
..
T Consensus 84 ~~ 85 (119)
T 2j48_A 84 EP 85 (119)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 175
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=23.65 E-value=3.9e+02 Score=23.80 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=66.3
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhc-CCeEEEEEEEEeeeeEeeeCCCCCccCccEEEec
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR-HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSH 221 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~-~~L~IvgEi~lpI~h~Lla~~g~~l~~Ik~VySH 221 (361)
.++..+.+..++.+++.+|++|++++|.. ....+..+ .+++|++-...- ...|++++. +.. |+|...
T Consensus 35 v~~~~~~~~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~~~~i~~~~~~g-~~~lv~~~~--LkG-K~Iav~ 102 (283)
T 3hn0_A 35 VQVKVVDSPDLAQALLIKQETDIAVLPMI--------NAANLYNKGIKIKLAGCPIWG-TLYLVEKTP--LKE-PALYVF 102 (283)
T ss_dssp EEEEEESCHHHHHHHHHTTCCSEEEEEHH--------HHHHHHHTTCSCEEEEEEECC-CCEEEECSS--CCS-CCEECS
T ss_pred EEEEEeCCHHHHHHHHHCCCCCEEEEcHH--------HHHHHHHCCCCeEEEEEeccc-EEEEEecCC--CCC-CEEEec
Confidence 57888999999999999999999998743 11112222 256666543322 223455433 322 466632
Q ss_pred -h--HHHHHHHHHHHhcC--CeEEecc-CHHHHHHHHHhcCCCCeEEecCHh
Q 018090 222 -P--QALAQCEMTLSNLG--IVRISAD-DTAGAAQMVASIGERDTGAVASAQ 267 (361)
Q Consensus 222 -P--qALaQC~~fL~~~~--~~~i~~~-STA~AA~~va~~~~~~~AAIas~~ 267 (361)
+ .+.-..+.+|++.+ ++++... +.+++...+..++ -+.+++....
T Consensus 103 ~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~-vDa~~~~eP~ 153 (283)
T 3hn0_A 103 GNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGK-VNRAVLGEPF 153 (283)
T ss_dssp STTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTS-CSEEEECTTH
T ss_pred CCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCC-CCEEEecccH
Confidence 2 23444567777765 5666665 6777777776653 3445444333
No 176
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=23.55 E-value=1.1e+02 Score=25.04 Aligned_cols=50 Identities=12% Similarity=0.025 Sum_probs=33.4
Q ss_pred EEEEeCCCCcHHHHHHHHHC---C-------CCceeecCCHHHHHHHHHcCCcCeEEEee
Q 018090 121 RVAYQGLPGAYSEAAARKAY---P-------KCETVPCDQFEAAFKAVELWLVDKAVLPI 170 (361)
Q Consensus 121 rIAyLGP~GTySe~AA~~~f---~-------~~e~vp~~sf~eVf~aV~~g~~d~gVVPI 170 (361)
+|+...|.++-...++..++ + ....+...+.+.+.+.|.+|+++.|+++.
T Consensus 106 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~i~~~~~ 165 (231)
T 1atg_A 106 HIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVAL 165 (231)
T ss_dssp CEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHHTTSSSEEEEEG
T ss_pred EEEecCCCCCchhHHHHHHHHHCCCcccccccceEEecCCHHHHHHHHHcCCCCEEEEEH
Confidence 68887776443333322222 1 01345678899999999999999999984
No 177
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=23.04 E-value=38 Score=30.15 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=31.9
Q ss_pred cEEEEeCCCCcHHHHHHHHHCCCC--ceeec--CCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGLPGAYSEAAARKAYPKC--ETVPC--DQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP~GTySe~AA~~~f~~~--e~vp~--~sf~eVf~aV~~g~~d~gVVP 169 (361)
.+||+. ..|++.+ ...+.+++. +++.+ ++.++++++|.+|++|+.+..
T Consensus 162 ~~vg~v-~~~s~~~-~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 162 FRFGTV-PNGSTER-NIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp CCEECC-TTSHHHH-HHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred ceEEEE-eCCchHH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEc
Confidence 467654 2356543 334444432 34555 899999999999999988864
No 178
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.94 E-value=1e+02 Score=23.36 Aligned_cols=112 Identities=9% Similarity=0.034 Sum_probs=65.2
Q ss_pred EEechHHHHHHHHHHHh-cCCe-EEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCC-CCCceEEEEE
Q 018090 218 VFSHPQALAQCEMTLSN-LGIV-RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDD-DDNVTRFLIL 294 (361)
Q Consensus 218 VySHPqALaQC~~fL~~-~~~~-~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~-~~N~TRFlvl 294 (361)
|=.++......+..|.+ .+++ ...+.+..+|.+.+.+.. + ...|.........|++++. .|... ....+.++++
T Consensus 14 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~-~-dlii~d~~l~~~~g~~~~~-~l~~~~~~~~~~ii~~ 90 (143)
T 3cnb_A 14 IEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK-P-DVVMLDLMMVGMDGFSICH-RIKSTPATANIIVIAM 90 (143)
T ss_dssp ECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC-C-SEEEEETTCTTSCHHHHHH-HHHTSTTTTTSEEEEE
T ss_pred EECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC-C-CEEEEecccCCCcHHHHHH-HHHhCccccCCcEEEE
Confidence 44577788888999998 7888 777888888888877653 4 3444443333344555544 34332 3456889988
Q ss_pred eeCCCCCCCC--CCceEEEEEEecCCcchHHHHHHHHHHC
Q 018090 295 AREPIIAGTD--RPYKTSIVFTLEEGPGMLFKALAVFALR 332 (361)
Q Consensus 295 ~r~~~~~~~~--~~~KtSi~f~~~~~PGaL~~iL~~Fa~~ 332 (361)
+......... -..-..-++.-|-.+..|...|.....+
T Consensus 91 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 91 TGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 8654211000 0001122344455677788777766543
No 179
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=22.77 E-value=1.1e+02 Score=27.32 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=37.5
Q ss_pred cEEEEeCC----CCcHHHHHHHHHCC-----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGL----PGAYSEAAARKAYP-----KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP----~GTySe~AA~~~f~-----~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.||++-=| .|.|..++..+. + ..+++..++..+++..|++|++|.|++.
T Consensus 133 ~~iai~dP~~~p~G~~a~~~l~~~-g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~ 190 (253)
T 3gzg_A 133 GRLAVGQTASVPAGSYAAAALRKL-GQWDSVSNRLAESESVRAALMLVSRGEAPLGIVY 190 (253)
T ss_dssp CCEEEECTTTSHHHHHHHHHHHHT-TCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CEEEEeCCCCCchHHHHHHHHHHc-CcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEE
Confidence 57888765 677776665442 2 1356788999999999999999999985
No 180
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=22.53 E-value=92 Score=27.21 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=37.0
Q ss_pred cEEEEeCC----CCcHHHHHHHHHCC-----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 018090 120 VRVAYQGL----PGAYSEAAARKAYP-----KCETVPCDQFEAAFKAVELWLVDKAVLP 169 (361)
Q Consensus 120 ~rIAyLGP----~GTySe~AA~~~f~-----~~e~vp~~sf~eVf~aV~~g~~d~gVVP 169 (361)
.||++--| .|.|+.++..+ .+ ...++...+..+++..|.+|++|.|++.
T Consensus 117 ~~iai~~p~~~p~G~~a~~~l~~-~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~ 174 (237)
T 3r26_A 117 GRLAVGDPEHVPAGIYAKEALQK-LGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVY 174 (237)
T ss_dssp CCEEEECTTTCHHHHHHHHHHHH-TTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CeEEEeCCCCCChHHHHHHHHHH-cCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEE
Confidence 57888766 57776666543 22 1246778899999999999999999985
No 181
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=22.18 E-value=4.2e+02 Score=23.60 Aligned_cols=132 Identities=12% Similarity=0.037 Sum_probs=76.6
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHHHHhcCCeEEEEEEEEeeeeEeeeCCCC---CccCcc---
Q 018090 143 CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGV---LKEELK--- 216 (361)
Q Consensus 143 ~e~vp~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~~Ik--- 216 (361)
++.++. +-..+++++.+|++|+.+--.-+++. ...++.. +.++...+...-.-.+.|++++.+ +++|++
T Consensus 32 Ve~~~~-~~~~~~~al~~G~iD~~~e~w~~~~~---~~~~~~~-~~~l~~l~~~~~~~~~~l~Vp~~~~i~si~DL~~~~ 106 (256)
T 3l6g_A 32 VKTTAL-DNAVAWQTVANGQADGMVSAWLPNTH---KTQWQKY-GKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQA 106 (256)
T ss_dssp EEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTT---HHHHHHH-GGGEEEEEEEEEEEEEEEEEETTSCCCBGGGCSSGG
T ss_pred eEEEEC-ChHHHHHHHHCCCCeEEEcccCCccc---HHHHHHh-CCceEEccccCCCceEEEEECCccCCCCHHHHHHhc
Confidence 567776 56778999999999986643333221 2344442 346777887766667888887754 445553
Q ss_pred --EEEechHHHH---HHHHHHHhc-CCe-EEecc-CHHH---HHHHHHhcCCCCeEEe-cCHhhHHHcCCceeec
Q 018090 217 --RVFSHPQALA---QCEMTLSNL-GIV-RISAD-DTAG---AAQMVASIGERDTGAV-ASAQAAEIYGLDILAE 279 (361)
Q Consensus 217 --~VySHPqALa---QC~~fL~~~-~~~-~i~~~-STA~---AA~~va~~~~~~~AAI-as~~AA~~YgL~iLa~ 279 (361)
+++.=|.... .....|+.+ +.. +..+. |.+. +.+.+.+.+....+.+ .+--.-..|+|.+|+.
T Consensus 107 ~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~~s~~~m~~~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 181 (256)
T 3l6g_A 107 NKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNKYDLKYLAD 181 (256)
T ss_dssp GGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEECCCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred CCeEEecCCCchhhHHHHHHHHhcCCCCCeEEecCCHHHHHHHHHHHHHCCCCEEEEeecCchhhhhcCeEEecC
Confidence 6666665433 223455556 543 33333 3321 1222333444555444 5666667899999874
No 182
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=21.89 E-value=2.3e+02 Score=25.80 Aligned_cols=142 Identities=13% Similarity=0.069 Sum_probs=82.2
Q ss_pred ccEEEEeCCCCcHHHHHHHHHCC-C------Cceee--------cCCHHHHHHHHHcCCcCeEEEeeecccccchHHhHH
Q 018090 119 KVRVAYQGLPGAYSEAAARKAYP-K------CETVP--------CDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYD 183 (361)
Q Consensus 119 ~~rIAyLGP~GTySe~AA~~~f~-~------~e~vp--------~~sf~eVf~aV~~g~~d~gVVPIENS~~G~V~~tlD 183 (361)
++|||.. +|.-++.+...+-. + .++.+ +---.|+-.-|+.|.+|.||+ -.|
T Consensus 2 ~L~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~~~~~~~i~~~~~R~~DIp~yV~~G~aDlGIt------------G~D 67 (219)
T 1o63_A 2 LLKLAIP--KGRLEEKVMTYLKKTGVIFERESSILREGKDIVCFMVRPFDVPTYLVHGVADIGFC------------GTD 67 (219)
T ss_dssp -CEEEEE--CSTTHHHHHHHHHHHTCCEEEECSSEEEETTEEEEEECGGGHHHHHHTTSCSEEEE------------EHH
T ss_pred cEEEEec--CchhHHHHHHHHHHCCCCccCCcCeeecCCCeEEEEECchhHHHHHhCCCccEEEe------------eeE
Confidence 4688886 89999888654310 0 11222 112368899999999999996 367
Q ss_pred HHhcCCeEEEEEEEEee---eeEeeeCCCCCccC-ccEEEechHHHHHHHHHHHhcC--CeEEeccCHHHHHHHHHhcCC
Q 018090 184 LLLRHRLHIVGEVQLVV---NHCLLGLPGVLKEE-LKRVFSHPQALAQCEMTLSNLG--IVRISADDTAGAAQMVASIGE 257 (361)
Q Consensus 184 lL~~~~L~IvgEi~lpI---~h~Lla~~g~~l~~-Ik~VySHPqALaQC~~fL~~~~--~~~i~~~STA~AA~~va~~~~ 257 (361)
+|.+++..+..-..|.. +.++++.++...++ -++|.+-.--+. ++|+++++ ++++..+..-|+|=.+--.
T Consensus 68 ~l~E~~~~v~elldLgfG~crl~vAvp~~~~~~~~~~RIATkyp~l~--r~yf~~~Gi~~~Ii~l~GsvE~aP~~GlA-- 143 (219)
T 1o63_A 68 VLLEKETSLIQPFFIPTNISRMVLAGPKGRGIPEGEKRIATKFPNVT--QRYCESKGWHCRIIPLKGSVELAPIAGLS-- 143 (219)
T ss_dssp HHHHSCCCCBCCSEEEEEEEEEEEEEETTTCCCSSCEEEEESCHHHH--HHHHHHHTCCEEEEECSSCTTHHHHHTSC--
T ss_pred eeeecCCCeeEEeccccccEEEEEEEECCCccccCCcEEEECcHHHH--HHHHHHCCCceEEEECCCceeeccCCCCc--
Confidence 77665322222233433 34455555421111 356776665554 78998876 5666666655555432111
Q ss_pred CCeEEe-cCHhhHHHcCCceee
Q 018090 258 RDTGAV-ASAQAAEIYGLDILA 278 (361)
Q Consensus 258 ~~~AAI-as~~AA~~YgL~iLa 278 (361)
...+=| .+-..-+.+||++++
T Consensus 144 DaIvDivsTG~TLraNgL~~ie 165 (219)
T 1o63_A 144 DLIVDITETGRTLKENNLEILD 165 (219)
T ss_dssp SEEEEEESSSHHHHHTTEEEEE
T ss_pred ceeEEeeccHHHHHHCCCEEee
Confidence 112223 456667899999985
No 183
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.18 E-value=1.1e+02 Score=23.26 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=65.7
Q ss_pred EEEechHHHHHHHHHHHhcCCeEEeccCHHHHHHHHHhcCCCCeEEecCHhhHHHcCCceeeccccCCCCCceEEEEEee
Q 018090 217 RVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 296 (361)
Q Consensus 217 ~VySHPqALaQC~~fL~~~~~~~i~~~STA~AA~~va~~~~~~~AAIas~~AA~~YgL~iLa~~IqD~~~N~TRFlvl~r 296 (361)
-|=.++......+.+|.+.+++...+.+..+|...+.+... ....|.........|++++. .|.......+++++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~-~dlvi~D~~l~~~~g~~~~~-~l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 12 VVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKR-IGLMITDLRMQPESGLDLIR-TIRASERAALSIIVVSG 89 (136)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTT-EEEEEECSCCSSSCHHHHHH-HHHTSTTTTCEEEEEES
T ss_pred EECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCC-CcEEEEeccCCCCCHHHHHH-HHHhcCCCCCCEEEEeC
Confidence 34457778888899998888888888888888888776532 34555444433444555554 34333245678888876
Q ss_pred CCCCCCCCC--CceEEEEEEecCCcchHHHHHHHHHH
Q 018090 297 EPIIAGTDR--PYKTSIVFTLEEGPGMLFKALAVFAL 331 (361)
Q Consensus 297 ~~~~~~~~~--~~KtSi~f~~~~~PGaL~~iL~~Fa~ 331 (361)
......... ..-..=++.-|-.+..|...|+....
T Consensus 90 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 90 DTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp SCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhc
Confidence 532100000 00012233445566777777766544
No 184
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=20.66 E-value=1.1e+02 Score=30.65 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=44.7
Q ss_pred hHHHcCCceeeccccCCCCCceEEEEEeeCCCC--CCC---CCCceEEEEEE---ecCCcchHHHHHHHHHHCCccccce
Q 018090 268 AAEIYGLDILAEKIQDDDDNVTRFLILAREPII--AGT---DRPYKTSIVFT---LEEGPGMLFKALAVFALRDINLTKI 339 (361)
Q Consensus 268 AA~~YgL~iLa~~IqD~~~N~TRFlvl~r~~~~--~~~---~~~~KtSi~f~---~~~~PGaL~~iL~~Fa~~~INLtkI 339 (361)
-|..+|.++.-.+..+...--|.|.--...... +-. ...+-+.|-+. .++.||.+.++++.|+++|||.-.|
T Consensus 253 ~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i 332 (446)
T 3tvi_A 253 PVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM 332 (446)
T ss_dssp HHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB
T ss_pred HHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE
Confidence 356789988877776543444765411100000 000 01123333343 3588999999999999999999888
Q ss_pred ee
Q 018090 340 ES 341 (361)
Q Consensus 340 ES 341 (361)
.+
T Consensus 333 ~~ 334 (446)
T 3tvi_A 333 PS 334 (446)
T ss_dssp CE
T ss_pred ec
Confidence 65
No 185
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=20.25 E-value=2.7e+02 Score=25.17 Aligned_cols=143 Identities=18% Similarity=0.208 Sum_probs=85.4
Q ss_pred CCccEEEEeCCCCcHHHHHHHHHC------C----C-Ccee----------ecCCHHHHHHHHHcCCcCeEEEeeecccc
Q 018090 117 GTKVRVAYQGLPGAYSEAAARKAY------P----K-CETV----------PCDQFEAAFKAVELWLVDKAVLPIENSVG 175 (361)
Q Consensus 117 ~~~~rIAyLGP~GTySe~AA~~~f------~----~-~e~v----------p~~sf~eVf~aV~~g~~d~gVVPIENS~~ 175 (361)
+.++|||.. +|.-++.+...+- . + -+++ .+-.-.|+-.-|+.|.+|.||+
T Consensus 3 ~~mL~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~~~v~~~~~R~~DIp~yV~~G~~DlGIt------- 73 (214)
T 2vd2_A 3 GKLLTMAMP--KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIA------- 73 (214)
T ss_dssp CCCEEEEEE--CSTTHHHHHHHHHHHTCCCCGGGTTCCCSEEEEGGGTEEEEEECTTHHHHHHHHTSSSEEEC-------
T ss_pred CccEEEEEc--ccccHHHHHHHHHHcCCCccCCCCCCCceEeecCCCCEEEEEECchhHHHHHhCCCccEEEe-------
Confidence 446889987 9999998875431 1 1 1111 1223468999999999999995
Q ss_pred cchHHhHHHHhcCCeEEEEEEEEeeeeE---eeeCCCCCccC-ccEEEechHHHHHHHHHHHhcC--CeEEeccCHHHHH
Q 018090 176 GSIHRNYDLLLRHRLHIVGEVQLVVNHC---LLGLPGVLKEE-LKRVFSHPQALAQCEMTLSNLG--IVRISADDTAGAA 249 (361)
Q Consensus 176 G~V~~tlDlL~~~~L~IvgEi~lpI~h~---Lla~~g~~l~~-Ik~VySHPqALaQC~~fL~~~~--~~~i~~~STA~AA 249 (361)
-.|.|.+++..+..-..|...+| +.+.++.+.++ -++|.+-.--+. ++|+++++ ++++..+..-|+|
T Consensus 74 -----G~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~RIATkyp~l~--~~yf~~~gi~~~ii~l~GsvE~a 146 (214)
T 2vd2_A 74 -----GKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVA--SSYFREQGEQVEIIKLNGSIELA 146 (214)
T ss_dssp -----CTHHHHSCSCSSEEEEECTTSCCEEEEEECTTCCCCSSSCEEEESCHHHH--HHHHHHHCCCCEEEECCSCTTHH
T ss_pred -----eeeeeeecCCCeEEeeccccCCEEEEEEEECCCChhhCCcEEEECcHHHH--HHHHHHcCCcEEEEECCCceeec
Confidence 36777776433334445644444 45554422222 346776665554 78998875 6777776665655
Q ss_pred HHHHhcCCCC-eEEe-cCHhhHHHcCCceee
Q 018090 250 QMVASIGERD-TGAV-ASAQAAEIYGLDILA 278 (361)
Q Consensus 250 ~~va~~~~~~-~AAI-as~~AA~~YgL~iLa 278 (361)
=.+- ..+ .+=| .+-..-+.+||++++
T Consensus 147 P~~G---lADaIvDivsTG~TLraNgL~~ie 174 (214)
T 2vd2_A 147 PLIG---LADRIVDIVSTGQTLKENGLVETE 174 (214)
T ss_dssp HHTT---SCSEEEEEECCSSSSCTTSCEEEE
T ss_pred cCCC---CceEEEEEeCCHHHHHHCCCEEeE
Confidence 3321 111 1212 344456788999884
Done!