RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 018090
         (361 letters)



>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 184

 Score =  162 bits (410), Expect = 2e-49
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 121 RVAYQGLPGAYSEAAARKAYPKCET--VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSI 178
           ++ Y G  G +S  A R+ + + E    P        KAV        V+PIENS+ G+I
Sbjct: 2   QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61

Query: 179 HRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIV 238
           +   D L +  +   GE++L +N  L G       ++K+V+S   A++Q    +      
Sbjct: 62  NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 121

Query: 239 RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 298
               D T  +   +    E    A+A   + E YG   +   I+D   NVTRFL++  + 
Sbjct: 122 YDYVDSTIQSLTKI----ENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 177

Query: 299 II 300
             
Sbjct: 178 QF 179


>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 65.2 bits (159), Expect = 4e-14
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 302 GTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRP 348
            +++    S++F+L+E  G L K L +F   DINLT IESRP R   
Sbjct: 10  NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK 56


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
           domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 309 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRP 348
             ++  + + PG+L   L  FAL +INL+ IESRP + + 
Sbjct: 3   MFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL 42


>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
           [TaxId: 562]}
          Length = 289

 Score = 26.2 bits (57), Expect = 6.4
 Identities = 29/182 (15%), Positives = 49/182 (26%), Gaps = 20/182 (10%)

Query: 134 AAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLR------ 187
           AA     P       D      + +        ++  +   G S       +        
Sbjct: 48  AAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGA 107

Query: 188 HRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAG 247
             LHI  +V             V KEE+       +A    +     + + R  A    G
Sbjct: 108 AGLHIEDQVGAKRCGHRPNKAIVSKEEMVD---RIRAAVDAKTDPDFVIMARTDALAVEG 164

Query: 248 AAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPY 307
                         A+  AQA    G ++L  +   +     +F    + PI+A      
Sbjct: 165 LDA-----------AIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFG 213

Query: 308 KT 309
            T
Sbjct: 214 AT 215


>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 77

 Score = 24.3 bits (53), Expect = 8.4
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 309 TSIVFTLEEGPGMLFKALAVFALRDINLTKIESR 342
             +    E   G+L     + A    N+T  ++ 
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTF 35


>d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas
           putida [TaxId: 303]}
          Length = 509

 Score = 26.1 bits (57), Expect = 8.8
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 32  GLDLRVLNKWECTCVGVLAQTHRAITPVEDDRPYTPDVQ 70
           GLDLR   K               +   + DR + PD++
Sbjct: 448 GLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIE 486


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,297,688
Number of extensions: 59595
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)