BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018091
         (361 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 32.0 bits (71), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 41  IHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLL 100
           +   PP  Q + L+ QH   M G TV     LVP++   H +   V    L  +G+ TLL
Sbjct: 8   VSERPPLLQTIPLSLQHLFAMFGATV-----LVPVL--FHINPATV----LLFNGIGTLL 56

Query: 101 QTLFGT-RLPTVMGPSAAFTLPVL 123
                  ++P  +G S AF  PVL
Sbjct: 57  YLFICKGKIPAYLGSSFAFISPVL 80


>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
          Length = 521

 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 243 VWAFAAILTAAGAYNNVPEQTKLSCRTDR-SYLLSSAPWIKVPYP---FQWGTPIFRASH 298
           VW   ++ +  G  N+VPE    + + D    +  SA W+   +      W   I+R   
Sbjct: 390 VWGEVSLYSYGGKVNSVPETATATAQRDSIIKVWMSATWMDPAHDDANLAWIREIYR--E 447

Query: 299 VFGMIGAALVTSAESTGTFI 318
           +F   G   V    + GTFI
Sbjct: 448 IFATTGGVPVPDDRTEGTFI 467


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,010,921
Number of Sequences: 62578
Number of extensions: 386387
Number of successful extensions: 943
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 7
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)