Query 018091
Match_columns 361
No_of_seqs 146 out of 1248
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:04:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 8.5E-55 1.9E-59 426.2 25.3 325 37-361 1-334 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 3.7E-52 7.9E-57 412.3 24.4 286 36-360 4-308 (451)
3 PRK11412 putative uracil/xanth 100.0 1.7E-47 3.6E-52 382.8 29.6 280 48-360 8-303 (433)
4 TIGR03616 RutG pyrimidine util 100.0 5.3E-45 1.1E-49 366.1 31.2 294 26-360 7-308 (429)
5 PRK10720 uracil transporter; P 100.0 2.6E-45 5.6E-50 368.4 28.5 272 36-360 2-288 (428)
6 TIGR00801 ncs2 uracil-xanthine 100.0 3E-44 6.5E-49 359.9 29.6 277 44-360 1-297 (415)
7 PF00860 Xan_ur_permease: Perm 100.0 8.2E-45 1.8E-49 361.4 19.9 280 48-360 1-295 (389)
8 TIGR03173 pbuX xanthine permea 100.0 7.6E-43 1.6E-47 349.1 26.5 266 54-360 1-281 (406)
9 COG2252 Xanthine/uracil/vitami 100.0 8.5E-27 1.8E-31 230.2 24.8 283 33-359 4-309 (436)
10 TIGR00843 benE benzoate transp 100.0 3.2E-26 7E-31 225.2 25.5 255 49-355 22-277 (395)
11 PF03594 BenE: Benzoate membra 99.9 2.8E-24 6E-29 208.4 23.3 257 49-357 6-263 (378)
12 COG3135 BenE Uncharacterized p 99.9 8E-23 1.7E-27 194.5 20.8 254 49-357 21-278 (402)
13 COG0659 SUL1 Sulfate permease 99.7 3.8E-16 8.2E-21 161.5 25.5 257 47-360 21-308 (554)
14 PRK11660 putative transporter; 99.6 1.2E-13 2.7E-18 144.0 25.3 265 47-359 29-338 (568)
15 TIGR00815 sulP high affinity s 99.6 2.8E-13 6.2E-18 141.2 25.6 268 47-360 14-319 (563)
16 KOG0236 Sulfate/bicarbonate/ox 98.9 6.2E-08 1.3E-12 102.8 19.3 261 64-360 91-387 (665)
17 PF00916 Sulfate_transp: Sulfa 98.7 1.1E-08 2.5E-13 97.2 5.4 172 163-359 2-206 (280)
18 PF11840 DUF3360: Protein of u 97.8 0.0015 3.2E-08 64.0 16.8 274 34-360 52-349 (492)
19 KOG1172 Na+-independent Cl/HCO 97.4 0.12 2.5E-06 56.0 25.7 281 56-360 364-694 (876)
20 TIGR00834 ae anion exchange pr 97.3 0.22 4.7E-06 54.8 27.4 252 87-359 403-717 (900)
21 TIGR00843 benE benzoate transp 83.5 26 0.00056 35.4 13.2 139 74-248 248-393 (395)
22 PF00955 HCO3_cotransp: HCO3- 81.0 1.9 4.2E-05 44.8 4.3 120 228-359 277-398 (510)
23 TIGR00801 ncs2 uracil-xanthine 59.5 1.3E+02 0.0028 30.4 11.7 78 86-185 270-347 (415)
24 KOG1924 RhoA GTPase effector D 59.2 11 0.00024 40.9 4.0 16 34-49 615-633 (1102)
25 TIGR03173 pbuX xanthine permea 56.0 2.2E+02 0.0048 28.4 14.8 77 86-184 254-330 (406)
26 PF13792 Sulfate_tra_GLY: Sulf 53.5 50 0.0011 25.7 6.0 58 46-116 15-74 (84)
27 KOG1292 Xanthine/uracil transp 49.4 71 0.0015 33.1 7.8 147 83-253 303-465 (510)
28 PF01914 MarC: MarC family int 49.3 2E+02 0.0044 26.0 13.7 30 168-197 164-200 (203)
29 PF00916 Sulfate_transp: Sulfa 47.3 12 0.00026 35.2 2.0 18 336-353 187-204 (280)
30 PF03594 BenE: Benzoate membra 46.7 3.2E+02 0.0069 27.5 14.7 143 70-248 228-377 (378)
31 PRK11660 putative transporter; 45.6 3.9E+02 0.0084 28.2 16.0 83 88-194 314-396 (568)
32 PLN00028 nitrate transmembrane 44.1 3.6E+02 0.0077 27.3 14.0 38 73-110 63-104 (476)
33 KOG1924 RhoA GTPase effector D 43.6 21 0.00045 38.9 3.1 8 169-176 736-743 (1102)
34 PF11821 DUF3341: Protein of u 42.7 96 0.0021 27.6 6.8 29 270-301 78-106 (173)
35 KOG2675 Adenylate cyclase-asso 40.1 26 0.00057 35.5 3.1 16 4-19 231-246 (480)
36 PF05977 MFS_3: Transmembrane 37.6 5E+02 0.011 27.1 16.1 129 41-184 214-345 (524)
37 PRK11412 putative uracil/xanth 36.6 4.8E+02 0.01 26.7 12.6 77 86-184 276-352 (433)
38 PRK05122 major facilitator sup 34.1 97 0.0021 30.0 6.1 71 42-112 12-86 (399)
39 PF00860 Xan_ur_permease: Perm 33.5 3.4E+02 0.0073 27.0 9.9 116 51-189 234-350 (389)
40 TIGR01299 synapt_SV2 synaptic 32.6 5.5E+02 0.012 28.2 12.0 38 75-112 196-237 (742)
41 PF06946 Phage_holin_5: Phage 31.5 89 0.0019 24.9 4.2 33 218-250 23-55 (93)
42 PF04284 DUF441: Protein of un 30.8 2.7E+02 0.0058 24.0 7.3 93 152-250 18-121 (140)
43 PF04172 LrgB: LrgB-like famil 29.4 2.4E+02 0.0052 26.0 7.4 78 167-250 11-94 (215)
44 COG3333 Uncharacterized protei 27.6 6.7E+02 0.015 26.0 10.6 32 328-359 241-272 (504)
45 PF02162 XYPPX: XYPPX repeat ( 27.3 34 0.00073 17.9 0.8 7 12-18 8-14 (15)
46 TIGR00815 sulP high affinity s 25.7 8E+02 0.017 25.8 16.7 81 89-193 295-375 (563)
47 COG2985 Predicted permease [Ge 24.5 1.6E+02 0.0034 30.8 5.6 26 151-179 400-425 (544)
48 COG3493 CitS Na+/citrate sympo 23.8 7.8E+02 0.017 25.0 10.3 38 145-185 112-151 (438)
49 COG0659 SUL1 Sulfate permease 23.3 9E+02 0.02 25.5 15.6 117 49-194 249-365 (554)
50 COG2095 MarC Multiple antibiot 22.2 2.3E+02 0.0049 25.9 5.8 49 146-197 141-197 (203)
51 PRK10739 putative antibiotic t 22.2 2.4E+02 0.0051 25.6 5.9 29 169-197 157-192 (197)
52 PRK11663 regulatory protein Uh 21.9 7.7E+02 0.017 24.3 10.4 144 29-189 1-154 (434)
53 PF06570 DUF1129: Protein of u 21.8 5.9E+02 0.013 22.9 10.7 84 146-250 81-166 (206)
54 PRK10720 uracil transporter; P 21.8 5.2E+02 0.011 26.2 9.0 33 153-185 306-338 (428)
55 PRK15087 hemolysin; Provisiona 20.9 5.6E+02 0.012 23.4 8.2 62 47-109 13-75 (219)
56 PRK04288 antiholin-like protei 20.6 4.6E+02 0.01 24.5 7.5 43 202-250 68-110 (232)
57 PRK12585 putative monovalent c 20.4 3.6E+02 0.0078 24.5 6.4 43 146-189 6-55 (197)
58 COG3817 Predicted membrane pro 20.2 6.6E+02 0.014 24.1 8.3 17 173-189 50-66 (313)
59 PRK09705 cynX putative cyanate 20.2 5.2E+02 0.011 25.1 8.5 36 68-104 228-263 (393)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.5e-55 Score=426.21 Aligned_cols=325 Identities=54% Similarity=0.981 Sum_probs=306.0
Q ss_pred cceecCCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchH-HHHHHHHHHHHHHHHHHHHHhCCCcceeeccc
Q 018091 37 LQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDK-GRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPS 115 (361)
Q Consensus 37 ~~~~~~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~-~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps 115 (361)
+.|++||.|||...+++|+||+++|+..++++|.+++.+++.+++|. +++||++++++||.|++|+++|.|||+++|+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 46999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCCCCCCcch----hhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHH
Q 018091 116 AAFTLPVLSIINDYNDGSFTSEHD----RFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGL 191 (361)
Q Consensus 116 ~a~~~~~~~i~~~~g~~~~~~~~~----~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l 191 (361)
++|+.|..++.....+.+..++++ +|++.+++++||+++++++++++|++|+.+++.|++.|..+.+.++++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 999999999998767777665544 6999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccchhhHHHHHHHHHHHHHH--hhhhc--ccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccc
Q 018091 192 FMRGFPLLGNCVEIGLPMLVLLVICQQY--LKRLH--PKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSC 267 (361)
Q Consensus 192 ~~~~~~~~~~~~~i~l~~l~v~i~l~~~--~k~~~--~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~ 267 (361)
++.+.+.++.+|.+++..+++.++++++ .++.. .+++++++++++++++.+.|+.|+++..++.+|.+++.+..++
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 43332 2557899999999999999999999999999998888888899
Q ss_pred cccccccCCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHH
Q 018091 268 RTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLV 347 (361)
Q Consensus 268 ~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~l 347 (361)
|+|.+...+++||+.+|+|++||.|+||.+....+....++.++|++|++.+++|.++.++++.+.+||++..||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99988888999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred hhhcCCCCCCccCC
Q 018091 348 EGIFGSVVGTTASV 361 (361)
Q Consensus 348 aglfG~~~~tt~s~ 361 (361)
+|+||+..++|+|+
T Consensus 321 ~gl~G~gtG~Tt~~ 334 (510)
T KOG1292|consen 321 AGLFGTGTGSTTSV 334 (510)
T ss_pred HHhhCCCccceeec
Confidence 99999999999875
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.7e-52 Score=412.28 Aligned_cols=286 Identities=29% Similarity=0.483 Sum_probs=263.6
Q ss_pred ccceecCCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH----hCCCccee
Q 018091 36 QLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTV 111 (361)
Q Consensus 36 ~~~~~~~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~----~G~rlPiv 111 (361)
+.....|||+|+.|.+++|+||+++||.+++++|++++.+.+++++|+.+++|+++++||++|++|.+ .|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 34455788889999999999999999999999999999999999999999999999999999999997 46699999
Q ss_pred eccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhh-hhccccCccchHHHHHHHHHH
Q 018091 112 MGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWG-NLARFFSPIVIVPFVCVVGLG 190 (361)
Q Consensus 112 ~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~-~l~~~~Pp~ViG~~v~lIGl~ 190 (361)
+|+||+++.|+.++.++++ .+++.++|+++++|+++++++.. ++ |++|+|||.|+|.++++||++
T Consensus 84 lG~sFafi~p~i~~~~~~g------------~~~~~~~G~ii~ag~~~~li~~~--~~~~l~rlfPPvVtG~Vi~~IGls 149 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG------------DGIAALLGGIIAAGLVYFLISPI--VKIRLARLFPPVVTGPVVLVIGLS 149 (451)
T ss_pred EechHHHHHHHHHHHhccC------------CchHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCceEEeEeeeehhh
Confidence 9999999999998887653 35899999999999999999975 56 999999999999999999999
Q ss_pred HHHhhhcccc--------------cchhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCC
Q 018091 191 LFMRGFPLLG--------------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAY 256 (361)
Q Consensus 191 l~~~~~~~~~--------------~~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~ 256 (361)
|++.++++++ ++..+++.+++++++++++.|++ +|++++|+|+++||++++.+|
T Consensus 150 L~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g~-------~~~i~ILiGlv~G~~la~~~G----- 217 (451)
T COG2233 150 LAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKGF-------LRRIPILIGLVVGYLLALFMG----- 217 (451)
T ss_pred hHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHhC-----
Confidence 9999987642 25678999999999999999765 789999999999999999998
Q ss_pred CCCcccccccccccccccCCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCc
Q 018091 257 NNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSR 336 (361)
Q Consensus 257 ~~~~~~~~~~~~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r 336 (361)
.+|++. +.+++||++|++++|++ +||+.+++++++++++++.|++|++.++++.++++..++++++|
T Consensus 218 -----------~vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~r 284 (451)
T COG2233 218 -----------MVDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRR 284 (451)
T ss_pred -----------CcCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCccccc
Confidence 468886 89999999999999998 99999999999999999999999999999999987666789999
Q ss_pred hhHHhhHHHHHhhhcCCCCCCccC
Q 018091 337 SIGLQGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 337 ~~~~~Gl~s~laglfG~~~~tt~s 360 (361)
++++||++++++|+||++|.|||+
T Consensus 285 g~~aDGlat~iag~fg~~p~Ttfa 308 (451)
T COG2233 285 GLLADGLATLIAGLFGGFPNTTFA 308 (451)
T ss_pred ceeeccHHHHHHHhcCCCCCCchh
Confidence 999999999999999999999986
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=1.7e-47 Score=382.80 Aligned_cols=280 Identities=19% Similarity=0.288 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHh
Q 018091 48 PQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIN 127 (361)
Q Consensus 48 ~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~ 127 (361)
++.+++|+||+++|+.+++++|+++++++|+|++|+..++|++++++|++|++|+++|+|||+++|+|++++.++.++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred hcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhccc-c------
Q 018091 128 DYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL-G------ 200 (361)
Q Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~-~------ 200 (361)
.....+. .++..++...|+.+++|++++++|++++++|++|+|||.|+|+++++||++|++.+++++ +
T Consensus 88 ~~~~~g~-----~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~ 162 (433)
T PRK11412 88 GEASRGT-----PINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA 162 (433)
T ss_pred cccccCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc
Confidence 2110000 011223344557999999999999999999999999999999999999999999988753 1
Q ss_pred --------cchhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccc
Q 018091 201 --------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRS 272 (361)
Q Consensus 201 --------~~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~~ 272 (361)
.++.+++.++.+++.++++.|+ ++|++++|+|+++||+++.++.. . |++
T Consensus 163 ~~~~~~~~~~~~~a~~~l~~il~~~~~~~g-------~~~~~svLiGiv~G~v~a~~~~g---------------~-d~~ 219 (433)
T PRK11412 163 DPNGKIQLPPFGLSVAVMCLVLAMIIFLPQ-------RIARYSLLVGTIVGWILWAFCFP---------------S-SHS 219 (433)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHhC---------------C-Ccc
Confidence 1245677777777788777755 48899999999999998764420 2 666
Q ss_pred ccCCCCCcccCCCCCCcCCCc-ccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhc
Q 018091 273 YLLSSAPWIKVPYPFQWGTPI-FRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIF 351 (361)
Q Consensus 273 ~~~~~a~~f~~P~~~~fg~P~-f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglf 351 (361)
. +.+++|. +++|+.|. ||+++++++++++++.+.|++|++.+++|.++++.++++++||++.+||++|+++|+|
T Consensus 220 ~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglf 294 (433)
T PRK11412 220 L-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPL 294 (433)
T ss_pred h-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhc
Confidence 4 6778885 34589995 9999999999999999999999999999999876655789999999999999999999
Q ss_pred CCCCCCccC
Q 018091 352 GSVVGTTAS 360 (361)
Q Consensus 352 G~~~~tt~s 360 (361)
|+.|+|+||
T Consensus 295 g~~p~tt~s 303 (433)
T PRK11412 295 AVIPFSPFV 303 (433)
T ss_pred CCCCCCchh
Confidence 999999987
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=5.3e-45 Score=366.08 Aligned_cols=294 Identities=24% Similarity=0.390 Sum_probs=243.5
Q ss_pred CCCCcccc-ccccceecCCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-
Q 018091 26 PIWTPAEQ-LQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL- 103 (361)
Q Consensus 26 ~~~~~~~~-~~~~~~~~~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~- 103 (361)
|.|.++++ +++..|++|||||+++++++|+||+++|+++++++|+++ |+|++ ++++++|++|++|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~ 75 (429)
T TIGR03616 7 PKWKPKQGSLEHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLI 75 (429)
T ss_pred CCceeccccCcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHH
Confidence 44445433 355779999999999999999999999999999999996 57764 579999999999974
Q ss_pred hCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhh---hhhccccCccch
Q 018091 104 FGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAW---GNLARFFSPIVI 180 (361)
Q Consensus 104 ~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~---~~l~~~~Pp~Vi 180 (361)
+|+|+|+++|+|++|+.++.++... ...+. ..++++++|+++++|++++++++++.+ +|++|+|||.|+
T Consensus 76 ~G~rlP~v~G~sf~f~~~~~~~~~~-~~~~~-------~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~ 147 (429)
T TIGR03616 76 TGGRVPSYLGSSAAFVGAVIAATGY-NGQGT-------NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVT 147 (429)
T ss_pred hCCCceeEEcCcHHHHHHHHHHHhh-cccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHH
Confidence 6999999999999999988765421 11111 135899999999999999999998654 889999999999
Q ss_pred HHHHHHHHHHHHHhhhccccc---chhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018091 181 VPFVCVVGLGLFMRGFPLLGN---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYN 257 (361)
Q Consensus 181 G~~v~lIGl~l~~~~~~~~~~---~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~ 257 (361)
|.++++||+++++.++++.+. ....++++++.+++++++.|++ +|++++|+|+++||++|+.++.. +
T Consensus 148 G~vv~lIGlsL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~~~-------l~~~avLiGivvG~iva~~l~~~--~- 217 (429)
T TIGR03616 148 GAVVMAIGLNLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTRGM-------LQRLLILVGLIAAYLAYFILTNV--F- 217 (429)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhh--c-
Confidence 999999999999999987542 1235777777777777777654 78899999999999999987421 0
Q ss_pred CCcccccccccccccccCCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCch
Q 018091 258 NVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRS 337 (361)
Q Consensus 258 ~~~~~~~~~~~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~ 337 (361)
+...+.|++. +.+++|+++| +|+.|+||++.++.+++.++++++|++|++.++++..+++. ++++||+
T Consensus 218 ------g~~~~vd~s~-v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~--~~~i~r~ 285 (429)
T TIGR03616 218 ------GLGKAVDFSP-ISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNL--DPYMGRA 285 (429)
T ss_pred ------CCCccccCcc-cccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--Cchhccc
Confidence 0001468775 7789999999 57789999999999999999999999999999999987543 3469999
Q ss_pred hHHhhHHHHHhhhcCCCCCCccC
Q 018091 338 IGLQGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 338 ~~~~Gl~s~laglfG~~~~tt~s 360 (361)
+.+||++|+++|++|+.|.|+|+
T Consensus 286 l~adGl~t~~agl~g~~p~tt~~ 308 (429)
T TIGR03616 286 FVGDGLATMLSGSVGGTGVTTYA 308 (429)
T ss_pred hhhhhHHHHHHHhcCCCCCccee
Confidence 99999999999999999999986
No 5
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=2.6e-45 Score=368.37 Aligned_cols=272 Identities=25% Similarity=0.391 Sum_probs=238.0
Q ss_pred ccceecCCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHh-CCCcceeecc
Q 018091 36 QLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF-GTRLPTVMGP 114 (361)
Q Consensus 36 ~~~~~~~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~-G~rlPiv~gp 114 (361)
+..|++|||||+.+.+++|+||+++|+.+++++|+++ |+|+++ +++++|++|++|++. |.|+|+++|+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 5679999999999999999999999999999999986 788743 689999999999975 5699999999
Q ss_pred ccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhh--h-hhhhccccCccchHHHHHHHHHHH
Q 018091 115 SAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSG--A-WGNLARFFSPIVIVPFVCVVGLGL 191 (361)
Q Consensus 115 s~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~g--l-~~~l~~~~Pp~ViG~~v~lIGl~l 191 (361)
||+|+.++.++.. .+|++++|+++++|+++++++++. + ++|++|+|||.|+|.++++||+++
T Consensus 71 sfa~i~~~~~~~~---------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L 135 (428)
T PRK10720 71 SFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLEL 135 (428)
T ss_pred cHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 9999999877653 369999999999999999999962 1 578999999999999999999999
Q ss_pred HHhhhcccc-----------cchhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 018091 192 FMRGFPLLG-----------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVP 260 (361)
Q Consensus 192 ~~~~~~~~~-----------~~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~ 260 (361)
.+.++++.+ .++.+++++++++++++++.|++ +|++++++||++||++++.+|.
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~kg~-------~~~~~iLigIvvG~ila~~lG~-------- 200 (428)
T PRK10720 136 AGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFRGF-------LAIIPILIGVLVGYALSFAMGM-------- 200 (428)
T ss_pred HHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhccH-------HHHhHHHHHHHHHHHHHHHhcC--------
Confidence 999886542 24667888888888777777654 6789999999999999999974
Q ss_pred ccccccccccccccCCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHH
Q 018091 261 EQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGL 340 (361)
Q Consensus 261 ~~~~~~~~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~ 340 (361)
.|++. +.+++|+++|. |+.|+||+..++.+++.+++.++|++|++.++++..+++..++++.||++.+
T Consensus 201 --------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~a 268 (428)
T PRK10720 201 --------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFA 268 (428)
T ss_pred --------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhh
Confidence 36654 67789999994 6679999999999999999999999999999999987654456789999999
Q ss_pred hhHHHHHhhhcCCCCCCccC
Q 018091 341 QGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 341 ~Gl~s~laglfG~~~~tt~s 360 (361)
||++|+++|+||++|+|+|+
T Consensus 269 dGlatii~glfG~~p~tty~ 288 (428)
T PRK10720 269 NGLSTVISGFFGSTPNTTYG 288 (428)
T ss_pred hhHHHHHHHhcCCCCccccc
Confidence 99999999999999999986
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=3e-44 Score=359.90 Aligned_cols=277 Identities=28% Similarity=0.471 Sum_probs=244.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhC---CCcceeeccccchHH
Q 018091 44 NPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFG---TRLPTVMGPSAAFTL 120 (361)
Q Consensus 44 ~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G---~rlPiv~gps~a~~~ 120 (361)
|||+++.+++|+||+++|+.+++++|++++.+. +|++|+..++|++++++|++|++|++.. .|+|.++|++|+++.
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999999 9999999999999999999999999753 347999999999999
Q ss_pred HHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhh--h-hhhhhccccCccchHHHHHHHHHHHHHhhhc
Q 018091 121 PVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS--G-AWGNLARFFSPIVIVPFVCVVGLGLFMRGFP 197 (361)
Q Consensus 121 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~--g-l~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~ 197 (361)
+...+..+ +++++++|+++++|+++++++++ + .++|++|+|||.|.|.++++||+++++.+++
T Consensus 80 ~~~~~~~~--------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~ 145 (415)
T TIGR00801 80 PMIAIGSG--------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVK 145 (415)
T ss_pred HHHHHHhc--------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHH
Confidence 88766543 46899999999999999999985 3 3578999999999999999999999999887
Q ss_pred ccc--------------cchhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q 018091 198 LLG--------------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQT 263 (361)
Q Consensus 198 ~~~--------------~~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~ 263 (361)
+++ .++.++++++++++.++++.|++ +|++++++++++||++++.+|.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g~-------~~~~aiLigiv~g~i~a~~lg~----------- 207 (415)
T TIGR00801 146 MAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKGF-------LKSISILIGILVGYILALFMGI----------- 207 (415)
T ss_pred HhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 642 13567888888887777777654 7889999999999999999874
Q ss_pred cccccccccccCCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhH
Q 018091 264 KLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGI 343 (361)
Q Consensus 264 ~~~~~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl 343 (361)
+|+++ +.+++|+++|.+++|+ |+||++.+..++++++++++|++|++.++++.+|++.++++++||++.+||+
T Consensus 208 -----~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl 280 (415)
T TIGR00801 208 -----VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGL 280 (415)
T ss_pred -----ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhH
Confidence 36654 6678999999988887 7999999999999999999999999999999998754436889999999999
Q ss_pred HHHHhhhcCCCCCCccC
Q 018091 344 GMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 344 ~s~laglfG~~~~tt~s 360 (361)
+|+++|+||++|.|+|+
T Consensus 281 ~~i~aglfG~~p~t~~s 297 (415)
T TIGR00801 281 ATLLAGLFGGFPNTTFA 297 (415)
T ss_pred HHHHHHhcCCCCCcchh
Confidence 99999999999999875
No 7
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=8.2e-45 Score=361.38 Aligned_cols=280 Identities=32% Similarity=0.536 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-hCCCcceeeccccchHHHHHHHH
Q 018091 48 PQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL-FGTRLPTVMGPSAAFTLPVLSII 126 (361)
Q Consensus 48 ~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~-~G~rlPiv~gps~a~~~~~~~i~ 126 (361)
+|++++|+||+++|+++++++|.++++++|+ ++|+.++++++++++|++|++|++ .|+|+|+++|+|++++.......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 5899999999999999999999999999899 778889999999999999999999 79999999999999887332221
Q ss_pred hhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhccccc-----
Q 018091 127 NDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGN----- 201 (361)
Q Consensus 127 ~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~~~----- 201 (361)
..+ ..|++++++++|+++++|+++++++++++++|++|+|||.|.|.++++||+++.+.++++.+.
T Consensus 80 g~~---------~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~ 150 (389)
T PF00860_consen 80 GMA---------ESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNP 150 (389)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---B
T ss_pred ccc---------cchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccc
Confidence 111 124578999999999999999999999999999999999999999999999999999876532
Q ss_pred ---------chhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccc
Q 018091 202 ---------CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRS 272 (361)
Q Consensus 202 ---------~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~~ 272 (361)
+..++..++...+.++++.|+ ++|++++++|+++||++++.+|.. |++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ailigi~~g~i~~~~~g~~----------------~~~ 207 (389)
T PF00860_consen 151 DGLLVGDGKNLGLAVLTLLFILLLSLFLKG-------FLRKGAILIGIIAGWIVAAILGVV----------------DFS 207 (389)
T ss_dssp TT-B---HHHHHHHHHHHHHHHHHHHSSST-------TTTTHHHHHHHHHHHHHHHHHHHT----------------TSS
T ss_pred cccccccccccccccccchhhhhhhhhhhh-------hcccccchhhhhhhhhhhhccccc----------------ccC
Confidence 223455556666666666544 467899999999999999999853 444
Q ss_pred ccCCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcC
Q 018091 273 YLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFG 352 (361)
Q Consensus 273 ~~~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG 352 (361)
+.+.++||+++|++++|++|+||+.+++.++.+++++++|++|++.+++|..|++.++++++||++.+||++|+++|+||
T Consensus 208 ~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G 287 (389)
T PF00860_consen 208 PSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFG 287 (389)
T ss_dssp H-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhc
Confidence 22566899999999999999999999999999999999999999999999999766668899999999999999999999
Q ss_pred CCCCCccC
Q 018091 353 SVVGTTAS 360 (361)
Q Consensus 353 ~~~~tt~s 360 (361)
+.|.|+|+
T Consensus 288 ~~~~t~~~ 295 (389)
T PF00860_consen 288 TSPTTTYS 295 (389)
T ss_dssp ---EEE-H
T ss_pred CCCCcccc
Confidence 99999885
No 8
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=7.6e-43 Score=349.09 Aligned_cols=266 Identities=29% Similarity=0.469 Sum_probs=234.8
Q ss_pred HHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH----HhCCCcceeeccccchHHHHHHHHhhc
Q 018091 54 AFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQT----LFGTRLPTVMGPSAAFTLPVLSIINDY 129 (361)
Q Consensus 54 GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~----~~G~rlPiv~gps~a~~~~~~~i~~~~ 129 (361)
|+||+++|+.+++++|++++++.|+|++|+.++++++++++|++|++|+ .+|+|+|+++|||++++.++..+..+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 5899999999999999999999999999999999999999999999997 35899999999999999988766532
Q ss_pred CCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhcccc---------
Q 018091 130 NDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLG--------- 200 (361)
Q Consensus 130 g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~~--------- 200 (361)
+++++++|+++++|++++++| ++++|++|+|||.++|.++++||+++.+.++++..
T Consensus 80 -------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~ 144 (406)
T TIGR03173 80 -------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFG 144 (406)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCccccc
Confidence 479999999999999999999 46899999999999999999999999998886542
Q ss_pred --cchhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccccCCCC
Q 018091 201 --NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSA 278 (361)
Q Consensus 201 --~~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~a 278 (361)
+++.+++.++++++++.++.|+ ++|++++++++++||++++.+|. .|++. +.++
T Consensus 145 ~~~~~~l~l~~l~~~il~~~~~~~-------~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~~ 200 (406)
T TIGR03173 145 SPQNLGLALLTLVIILLLNRFGKG-------FLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAEA 200 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhh-------HHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hccC
Confidence 2356788887777766666544 47789999999999999999874 35543 6667
Q ss_pred CcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCCCCc
Q 018091 279 PWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTT 358 (361)
Q Consensus 279 ~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~tt 358 (361)
+|+.+|++++|++|+||+..+..++.+++++++|++|+..++++..|++ .|++++||++.+||++|+++|+||++|.|+
T Consensus 201 ~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~-~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~ 279 (406)
T TIGR03173 201 PWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRP-ITEKDLAGGLRADGLGSALGGLFNTFPYTS 279 (406)
T ss_pred CeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCchhccchHHhccHHHHHHHHhCCCCCcc
Confidence 9999999888999999999999999999999999999999999998753 456789999999999999999999999988
Q ss_pred cC
Q 018091 359 AS 360 (361)
Q Consensus 359 ~s 360 (361)
|+
T Consensus 280 ~~ 281 (406)
T TIGR03173 280 FS 281 (406)
T ss_pred hh
Confidence 75
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.95 E-value=8.5e-27 Score=230.18 Aligned_cols=283 Identities=16% Similarity=0.188 Sum_probs=215.6
Q ss_pred cccccceecCCCCC-hHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccee
Q 018091 33 QLQQLQYCIHSNPP-WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTV 111 (361)
Q Consensus 33 ~~~~~~~~~~e~pp-~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv 111 (361)
+-.|+.|+++|+.+ .++|+.+|++++++|.|...++|.+++++ |+| ..++..++++.++++|++++++ +|+|+.
T Consensus 4 ~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~~---~~av~~AT~l~a~~gs~~mgl~-An~P~a 78 (436)
T COG2252 4 GDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GMP---VGAVFVATCLAAAIGSIAMGLY-ANLPIA 78 (436)
T ss_pred hHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CCC---chhHHHHHHHHHHHHHHHHHHH-HcCchh
Confidence 44688999999998 99999999999999999999999999984 676 5888999999999999999996 999999
Q ss_pred eccccchHHHH-HHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCc-------cchHHH
Q 018091 112 MGPSAAFTLPV-LSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSP-------IVIVPF 183 (361)
Q Consensus 112 ~gps~a~~~~~-~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp-------~ViG~~ 183 (361)
++|.+..-... .++...++ .+||+++|+++++|+++++++++|+|+|++|.+|. ..+|.+
T Consensus 79 lapgmglnAfFaftvv~~~g------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlF 146 (436)
T COG2252 79 LAPGMGLNAFFAFTVVLGMG------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLF 146 (436)
T ss_pred hcchhhHHHHHHHHHHHhcC------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99998322111 12333333 57999999999999999999999999999999997 446777
Q ss_pred HHHHHHHHHHhhhcc------cc---c-chhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhh
Q 018091 184 VCVVGLGLFMRGFPL------LG---N-CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAA 253 (361)
Q Consensus 184 v~lIGl~l~~~~~~~------~~---~-~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~ 253 (361)
+++||+........+ +| + ...++++++++++++ ..||+ +.+++++|+..+++++++|..
T Consensus 147 ia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~g~~ 215 (436)
T COG2252 147 IALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIILGID 215 (436)
T ss_pred HHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHhccc
Confidence 777777755443321 22 2 356677888877777 66665 489999999999999999853
Q ss_pred cCCCCCcccccccccccccccCCCCCcccCCCCCCcCCC--cccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC--C
Q 018091 254 GAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTP--IFRASHVFGMIGAALVTSAESTGTFIAASRFAGATA--P 329 (361)
Q Consensus 254 ~~~~~~~~~~~~~~~~d~~~~~~~a~~f~~P~~~~fg~P--~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~--~ 329 (361)
.. + .+....-|. -.|...+.+.. ...+..+..++...+++++|++|++.++++++|..+ .
T Consensus 216 ~~--------------~-~~~~~~~p~-~~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g 279 (436)
T COG2252 216 VH--------------F-GGLVGAPPS-LSPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNG 279 (436)
T ss_pred cc--------------c-cccccCCCC-ccchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCC
Confidence 11 0 000010000 00111111111 122455667789999999999999999999998533 3
Q ss_pred CCccCCchhHHhhHHHHHhhhcCCCCCCcc
Q 018091 330 PAHVLSRSIGLQGIGMLVEGIFGSVVGTTA 359 (361)
Q Consensus 330 ~~~~~~r~~~~~Gl~s~laglfG~~~~tt~ 359 (361)
+.++.+|.+.+|++++++++++|+++.|+|
T Consensus 280 ~~~~~~~al~~D~v~t~~ga~~GtS~~t~y 309 (436)
T COG2252 280 KMPRIGKALLADSVATVVGALFGTSTVTAY 309 (436)
T ss_pred CccccchHHHHhHHHHHHHHhcCCcchhhh
Confidence 457999999999999999999999999876
No 10
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.95 E-value=3.2e-26 Score=225.24 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhh
Q 018091 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (361)
Q Consensus 49 ~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~ 128 (361)
..+.+|+..+++.+.+.+++.+..+++.|+|++|.++|+++.++.+|++|++|+++ +|+|++++||. |..++...
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awSt----PGaAll~~ 96 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSA----PGAALLVT 96 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCc----hHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999995 89999999995 33333211
Q ss_pred cCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhcccccchhhHHH
Q 018091 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLP 208 (361)
Q Consensus 129 ~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~~~~~~i~l~ 208 (361)
.. + +.+++++.|+++++|++.+++|++|+++|++|+||+.+.+.+++.|.+.+.-..++...+.+.+++.
T Consensus 97 ~~-~---------~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~ 166 (395)
T TIGR00843 97 GF-P---------GISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFS 166 (395)
T ss_pred hc-C---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11 0 1579999999999999999999999999999999999999999888666544444445556666655
Q ss_pred HHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccccCCCCCcccCCCCCC
Q 018091 209 MLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQ 288 (361)
Q Consensus 209 ~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~a~~f~~P~~~~ 288 (361)
.++.+++ .| |+.+++++++++++|+++++..|.. |.++ +.. . +..| .
T Consensus 167 mll~~l~----~~-------r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~-~-l~~p---~ 213 (395)
T TIGR00843 167 MLLCWLA----SK-------AFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF-K-IALP---Q 213 (395)
T ss_pred HHHHHHH----HH-------HhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc-c-cccc---e
Confidence 5444443 22 3356799999999999999988743 2221 110 0 2334 5
Q ss_pred cCCCcccHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCC
Q 018091 289 WGTPIFRASHVFGM-IGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVV 355 (361)
Q Consensus 289 fg~P~f~~~~i~~~-~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~ 355 (361)
|..|+||+...+.. +|.+++++.+..-.-.++.|.+||+++ .|+.+..+|++|+++++||+++
T Consensus 214 ~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p----~~~~~~~tGl~sll~ApfGg~~ 277 (395)
T TIGR00843 214 FIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP----AKPIIAAAGLAALFAAFAGGIS 277 (395)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC----chHHHHHHHHHHHHHhccCCch
Confidence 67799998887765 499999998665556788888887543 6999999999999999999998
No 11
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.93 E-value=2.8e-24 Score=208.41 Aligned_cols=257 Identities=23% Similarity=0.273 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhh
Q 018091 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (361)
Q Consensus 49 ~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~ 128 (361)
+++..|+..+++.+.+.+++.+..+++.|++++|+.+|+.+.++.+|+.|++.++ .+|+|++.+||. |..++..+
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl-~yR~Pi~~AWSt----PGaAlL~~ 80 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSL-RYRMPIVTAWST----PGAALLAT 80 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchhhcch----HHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999 599999999998 44443332
Q ss_pred cCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhcccccchhhHHH
Q 018091 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLP 208 (361)
Q Consensus 129 ~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~~~~~~i~l~ 208 (361)
... +.+++++.|+++++|++.+++|++|+++|++|+||+.+...|++.+-+...-..++.+.+++.+...
T Consensus 81 ~~~----------~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ 150 (378)
T PF03594_consen 81 SLP----------GYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGP 150 (378)
T ss_pred hcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 210 1689999999999999999999999999999999999999999988333333333445567878777
Q ss_pred HHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccccCCCCCcccCCCCCC
Q 018091 209 MLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQ 288 (361)
Q Consensus 209 ~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~a~~f~~P~~~~ 288 (361)
+++.+++..|+ .++++++.++++|.++++..|.. +..+ +. -++..| .
T Consensus 151 ml~~~l~~~r~-----------~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~~--~~~~~p---~ 197 (378)
T PF03594_consen 151 MLAVFLLARRF-----------SPRYAVLAALVAGVAVAALTGQL----------------HPSA-LQ--LSLAHP---V 197 (378)
T ss_pred HHHHHHHHHHH-----------cchhHHHHHHHHHHHHHHhcCCC----------------Cccc-cc--ccccee---E
Confidence 77777755433 34589999999999998877642 2221 11 123344 6
Q ss_pred cCCCcccHhHHHHHH-HHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCCCC
Q 018091 289 WGTPIFRASHVFGMI-GAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGT 357 (361)
Q Consensus 289 fg~P~f~~~~i~~~~-~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~t 357 (361)
|..|+||+..++.+. |+++++|......-.++-|..|++. +.|+-+...|++|++.++||+++.+
T Consensus 198 ~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~----p~~~~~~~tGl~s~l~ApfGg~~~n 263 (378)
T PF03594_consen 198 FTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQP----PVNPLITVTGLASLLAAPFGGHAVN 263 (378)
T ss_pred EECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCC----CchHHHHHHHHHHHHHhhhchhhhH
Confidence 788999999999875 9999999966666688889888854 4899999999999999999998765
No 12
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=8e-23 Score=194.52 Aligned_cols=254 Identities=23% Similarity=0.292 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhh
Q 018091 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (361)
Q Consensus 49 ~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~ 128 (361)
+++..|++.+++-+.++.++.+..+++.|.+++|+++|+.+..+.+|+.|+..++. +|+|++.+||. |..++..+
T Consensus 21 ~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWST----PG~all~a 95 (402)
T COG3135 21 QTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWST----PGAALLVA 95 (402)
T ss_pred hhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecC----ccHHHHHh
Confidence 78999999999999999998888889999999999999999999999999999994 99999999998 55544432
Q ss_pred cCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhcc---cccchhh
Q 018091 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPL---LGNCVEI 205 (361)
Q Consensus 129 ~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~---~~~~~~i 205 (361)
.. . +.++.++.|+++++|.+.++.|.+|.++|+++.+|+.+...+++.| +.+++++. +.+++.+
T Consensus 96 sl-~---------g~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGI---LL~F~l~a~~a~~~~p~l 162 (402)
T COG3135 96 SL-G---------GLSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGI---LLRFGLKAFKALPTQPLL 162 (402)
T ss_pred cc-C---------CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHH---HHHHHHHHHhccCCChHH
Confidence 21 0 2689999999999999999999999999999999999999998888 66666654 5567878
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccccCCCCCcccCCC
Q 018091 206 GLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPY 285 (361)
Q Consensus 206 ~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~a~~f~~P~ 285 (361)
.+.+++.++...++. ++++++..+++|.+++...|.. +. .......+.|
T Consensus 163 ~lpmv~~~ll~r~f~-----------pr~aV~aalvvgv~va~~~G~~----------------~~---~~~~~~~~~p- 211 (402)
T COG3135 163 VLPMVLAYLLARVFA-----------PRYAVIAALVVGVLVAALLGDL----------------HT---ALVALEISTP- 211 (402)
T ss_pred HHHHHHHHHHHHHcC-----------chHHHHHHHHHHHHHHHHhCcc----------------cc---cccccccCcc-
Confidence 777777776553333 3599999999999999998843 11 1112234456
Q ss_pred CCCcCCCcccHhHHHHHH-HHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCCCC
Q 018091 286 PFQWGTPIFRASHVFGMI-GAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGT 357 (361)
Q Consensus 286 ~~~fg~P~f~~~~i~~~~-~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~t 357 (361)
+|..|+||+.+++.+. |+++++|......-.++-|.+|++. ..+..+...|+.+++++.||++.++
T Consensus 212 --~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~p----p~~pl~~~TGl~sll~ApfG~~t~n 278 (402)
T COG3135 212 --TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQP----PPSPLIVATGLASLLSAPFGGHTVN 278 (402)
T ss_pred --eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCCC----CCchHHHHhHHHHHHhcccccceec
Confidence 7888999999999875 9999999966667788899888854 3678899999999999999998875
No 13
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.8e-16 Score=161.52 Aligned_cols=257 Identities=20% Similarity=0.265 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHHh--hcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHH
Q 018091 47 WPQALLLAFQHYIVMLGTTVLISSTLVP--LMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (361)
Q Consensus 47 ~~~~i~~GlQh~l~m~~~~vvvP~il~~--a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~ 124 (361)
+++.+++|++-.. +++|.-++- +.|.++ ...+.++-++.++.+++|.+-=.+.||..++..-+..
T Consensus 21 l~~Dl~AGltva~------valP~ama~a~~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 21 LRGDLLAGLTVAA------VALPLAMAFAIAAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred hHHHHHHHHHHHH------HHhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 6679999998544 455666553 469998 7888999999999999966665799998866555554
Q ss_pred HHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhccc-c---
Q 018091 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL-G--- 200 (361)
Q Consensus 125 i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~-~--- 200 (361)
+.++.. .++++.+.-+.+++|++++++|++|+ +++.+++|..|+-.++..||+.++-..+..+ |
T Consensus 88 ~i~~~~-----------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 88 VIASLV-----------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 444210 15799999999999999999999997 9999999999998899999997765544221 1
Q ss_pred ------------------cc---hhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 018091 201 ------------------NC---VEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV 259 (361)
Q Consensus 201 ------------------~~---~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~ 259 (361)
.| ..++++++.+++.+.++.+ |.++.++++++++.+.+.++...
T Consensus 156 ~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~----------~~P~~liaiv~~t~i~~~~~~~~----- 220 (554)
T COG0659 156 KVSGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTP----------RIPSPLIALVLGTLIVWIFPLDS----- 220 (554)
T ss_pred cccchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhh----------hCCcHHHHHHHHHHHHHHhcCCc-----
Confidence 12 2345555555554433332 24678999999999999986421
Q ss_pred cccccccccccccccCCCCCcccCCCCCCcCCCcccHhHH----HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCC
Q 018091 260 PEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHV----FGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLS 335 (361)
Q Consensus 260 ~~~~~~~~~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i----~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~ 335 (361)
..++ .+..+.....+ +|..|.++++.+ ...+.++++.+.|++.+..+.++.+|+ +++.|
T Consensus 221 -~~~G----~i~~~lp~~~~--------~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~n 283 (554)
T COG0659 221 -LRYG----EIPGSLPSGLP--------HFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSN 283 (554)
T ss_pred -hhcc----cCcccCCcCCC--------cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCC
Confidence 0010 01111111122 445565555444 445578888999999999999988765 46689
Q ss_pred chhHHhhHHHHHhhhcCCCCCCccC
Q 018091 336 RSIGLQGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 336 r~~~~~Gl~s~laglfG~~~~tt~s 360 (361)
|++.++|++|+.+|+||++|.|...
T Consensus 284 rELiaqGiaNi~sglfgg~p~~g~~ 308 (554)
T COG0659 284 RELIAQGIANIASGLFGGIPATGSI 308 (554)
T ss_pred HHHHHhhHHHHHHHHhCCccccchh
Confidence 9999999999999999999998753
No 14
>PRK11660 putative transporter; Provisional
Probab=99.62 E-value=1.2e-13 Score=144.04 Aligned_cols=265 Identities=19% Similarity=0.262 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHH
Q 018091 47 WPQALLLAFQHYIVMLGTTVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (361)
Q Consensus 47 ~~~~i~~GlQh~l~m~~~~vvvP~il~~a--~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~ 124 (361)
+...+.+|++-.+.. +|.-++-| .|+++ +..+..+-+++++.+++|+.--++.||..+...-...
T Consensus 29 l~~D~iAGltv~~~~------iPq~mayA~lag~pp-------~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~ 95 (568)
T PRK11660 29 FTRDLIAGITVGIIA------IPLAMALAIASGVPP-------QYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYP 95 (568)
T ss_pred hhHHHHHHHHHHHHH------HHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHH
Confidence 678999999865554 45555433 58887 5678899999999999977777899998743222222
Q ss_pred HHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhccc-c---
Q 018091 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL-G--- 200 (361)
Q Consensus 125 i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~-~--- 200 (361)
+.++ .+.+.+..+.+++|++++++|++|+ +++.+++|..|+..++..+|+.++-..++.+ |
T Consensus 96 ~~~~--------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~ 160 (568)
T PRK11660 96 VSQQ--------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQM 160 (568)
T ss_pred HHHH--------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2222 3456677789999999999999996 8999999999999999999986654433211 1
Q ss_pred --------------------cch---hhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCC-
Q 018091 201 --------------------NCV---EIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAY- 256 (361)
Q Consensus 201 --------------------~~~---~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~- 256 (361)
.+| .+++.++++++++.++.++ ...-++++++++++++.++..+..
T Consensus 161 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~----------iP~~li~iiv~t~~~~~~~~~~~~v 230 (568)
T PRK11660 161 AHVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILWPRLKIR----------LPGHLPALLAGTAVMGVLNLLGGHV 230 (568)
T ss_pred CCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhccc----------CchHHHHHHHHHHHHHHHhccCCCc
Confidence 012 2444555544443322222 355688999999998888743110
Q ss_pred CCCcccccccccc-cc-c--ccCCCCCcccCCCCCCcCCC-------cccHhH----HHHHHHHHHHHHHHHHHHHHHHH
Q 018091 257 NNVPEQTKLSCRT-DR-S--YLLSSAPWIKVPYPFQWGTP-------IFRASH----VFGMIGAALVTSAESTGTFIAAS 321 (361)
Q Consensus 257 ~~~~~~~~~~~~~-d~-~--~~~~~a~~f~~P~~~~fg~P-------~f~~~~----i~~~~~~~lv~~~esig~~~av~ 321 (361)
+.....+. ... |- . ......|-+.+| +..| .+|++. +...+.+.++..+|++.+....+
T Consensus 231 ~~vg~~~~--~~~~~g~~~~~ip~~~p~~~~p----~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~ 304 (568)
T PRK11660 231 ATIGSRFH--YVLADGSQGNGIPPLLPQFVLP----WNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLD 304 (568)
T ss_pred eeeccccc--ccccccccccCCCCCCCCCCCC----ccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 00 0 000001111122 1101 235544 33455778888889887777777
Q ss_pred hhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCCCCcc
Q 018091 322 RFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTA 359 (361)
Q Consensus 322 ~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~tt~ 359 (361)
+..++ +.+.||++.++|++|+++|+||++|.+++
T Consensus 305 ~~~~~----~~d~n~EL~a~G~aNi~~~~fgg~p~~~s 338 (568)
T PRK11660 305 GMTGT----KHSANSELVGQGLGNIVAPFFGGITATAA 338 (568)
T ss_pred HhcCC----CCCCcHHHHHHhHHHHHHHHhCcccccch
Confidence 76553 35689999999999999999999999875
No 15
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.60 E-value=2.8e-13 Score=141.21 Aligned_cols=268 Identities=21% Similarity=0.229 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHH
Q 018091 47 WPQALLLAFQHYIVMLGTTVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS 124 (361)
Q Consensus 47 ~~~~i~~GlQh~l~m~~~~vvvP~il~~a--~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~ 124 (361)
+...+.+|++-.+.. +|.-++-| .|+++ ...+..+.+..++.+++|+.--++.||..+.-.-...
T Consensus 14 l~~Di~aGltv~~~~------iP~~~ayA~laglpp-------~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 14 FKGDLMAGLTVGILL------IPQAMAYAILAGLSP-------IYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred hhhHHHHHHHHHHHH------HHHHHHHHHHcCCCc-------hhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 678999999865444 45555433 58988 5678899999999999987777899998743333333
Q ss_pred HHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhc------c
Q 018091 125 IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFP------L 198 (361)
Q Consensus 125 i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~------~ 198 (361)
+..+++..+..+. ...+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++-..++ .
T Consensus 81 ~v~~~~~~~~~~~-----~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~ 154 (563)
T TIGR00815 81 VIARVGLQYLFDC-----DAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISI 154 (563)
T ss_pred HHHHhcCCCCccc-----HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4444432221111 2456677889999999999999996 99999999999999999999977633221 1
Q ss_pred -----------------cc-c---chh---hHHHHHHHHHHHHHHhhhhcccchhh--HhHHHHHHHHHHHHHHHHHHHh
Q 018091 199 -----------------LG-N---CVE---IGLPMLVLLVICQQYLKRLHPKAHFI--VERFALLFCIGVVWAFAAILTA 252 (361)
Q Consensus 199 -----------------~~-~---~~~---i~l~~l~v~i~l~~~~k~~~~~~~~~--~~~~aiLigivvG~~~a~~~g~ 252 (361)
++ . |+. ++++++++++ ..|++.++.++. ......|+.+++++++.+.++.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~----~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~ 230 (563)
T TIGR00815 155 FNTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLL----YTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLH 230 (563)
T ss_pred CCCCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH----HHHHhhhhccchhcccccHHHHHHHHHHHHHHHHcc
Confidence 11 1 332 2233333333 233332211111 1235678888888888776632
Q ss_pred hcCCCCCcccccccccccccccCCCCCcccCCCCCCcCCCcccHhH----HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 018091 253 AGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASH----VFGMIGAALVTSAESTGTFIAASRFAGATA 328 (361)
Q Consensus 253 ~~~~~~~~~~~~~~~~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~----i~~~~~~~lv~~~esig~~~av~~~~~~~~ 328 (361)
.+ .+.. .+++-|- .+| .+..|.+|+.. +...+.++++.++|++...++.++..++
T Consensus 231 ~~--------------~~~~-~~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~-- 289 (563)
T TIGR00815 231 KK--------------QGVS-ILGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY-- 289 (563)
T ss_pred CC--------------CCeE-EEeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 10 0110 0111110 122 23445566544 3345688899999999998888887654
Q ss_pred CCCccCCchhHHhhHHHHHhhhcCCCCCCccC
Q 018091 329 PPAHVLSRSIGLQGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 329 ~~~~~~~r~~~~~Gl~s~laglfG~~~~tt~s 360 (361)
+.+.||++.++|++|+++|+||++|.+.++
T Consensus 290 --~~d~n~El~a~G~~N~~~~~fg~~p~~~s~ 319 (563)
T TIGR00815 290 --KIDANQELVAQGIANIVGSFFSCYPATGSL 319 (563)
T ss_pred --CCCCcHHHHHhhHHHHHHHHhCccCCCCcc
Confidence 356899999999999999999999998653
No 16
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=98.92 E-value=6.2e-08 Score=102.84 Aligned_cols=261 Identities=17% Similarity=0.185 Sum_probs=163.2
Q ss_pred hHhHHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHH--HHhhcCC-CCCCCcc
Q 018091 64 TTVLISSTLVPL--MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLS--IINDYND-GSFTSEH 138 (361)
Q Consensus 64 ~~vvvP~il~~a--~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~--i~~~~g~-~~~~~~~ 138 (361)
+++.+|--++-+ +|+++ ...+..+.++.+++.++|+--++..||-. .+.-+.. +.+.... ....++
T Consensus 91 g~l~VPQ~iaYa~la~lpp-------iyGLYssf~~~~iY~~fGtsr~isiG~~a-v~sLmv~~~v~~~v~~~~~~~~~- 161 (665)
T KOG0236|consen 91 GSLSVPQGLAYALLAGLPP-------IYGLYSSFFPPLIYAIFGTSRHVSIGPFA-VVSLMVGTVVSQVVLSEAPSNDI- 161 (665)
T ss_pred eeeecchHHHHHHHcCCCh-------HHHHHHHHHHHHHheeccCCCcccccHHH-HHHHHHHHHHHHHHhccCCCcCc-
Confidence 344556655543 57776 67788899999999999999999888854 2222211 1111100 000001
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhh------cccc------------
Q 018091 139 DRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGF------PLLG------------ 200 (361)
Q Consensus 139 ~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~------~~~~------------ 200 (361)
...++.+....+++|++++++|++|+ +++.+++|..++..++...++.+.--.+ +++.
T Consensus 162 ---~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~ 237 (665)
T KOG0236|consen 162 ---ATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIV 237 (665)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEee
Confidence 14688899999999999999999996 9999999988887788877775543322 2110
Q ss_pred --------c---chhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccc
Q 018091 201 --------N---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRT 269 (361)
Q Consensus 201 --------~---~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~ 269 (361)
+ ++.+++..+++.+....+.++.. ++-++.....-++.+++++++++.+...+.+.. ...
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~l~~L~~~k~~~~~~~-~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------~~~ 308 (665)
T KOG0236|consen 238 FDLLANLPKTLATLVLSLIFLVVLLLTKELNPKFK-KKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------IIV 308 (665)
T ss_pred HHhhhcccccchhhhhHHHHHHHHHHHHHhhhhhc-ccceeecccHHHHHHHHHHHHHHHhccccccCC--------eee
Confidence 0 13344444444333221333221 111223455688999999999998864310000 001
Q ss_pred cccccCCCCCcccCCCCCCcCCCccc--HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHH
Q 018091 270 DRSYLLSSAPWIKVPYPFQWGTPIFR--ASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLV 347 (361)
Q Consensus 270 d~~~~~~~a~~f~~P~~~~fg~P~f~--~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~l 347 (361)
+ + + .++ +| +...|.++ ...+...+.+.++.+.|+++--...++..+++ -+-|+++.+-|++|++
T Consensus 309 ~--~-i--~~g--~~---~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~----vd~nqELiAlG~~Ni~ 374 (665)
T KOG0236|consen 309 G--E-I--PRG--FP---PPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYK----VDSNQELIALGISNIL 374 (665)
T ss_pred c--c-C--CCC--CC---CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCe----eCCChHHHHHHHHHHh
Confidence 0 1 1 112 22 22334333 23455678899999999887777777776653 4579999999999999
Q ss_pred hhhcCCCCCCccC
Q 018091 348 EGIFGSVVGTTAS 360 (361)
Q Consensus 348 aglfG~~~~tt~s 360 (361)
+++|++.|+|..+
T Consensus 375 sSff~~~p~tgs~ 387 (665)
T KOG0236|consen 375 SSFFGCYPTTGSF 387 (665)
T ss_pred hhhhceEcccchh
Confidence 9999999998754
No 17
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.73 E-value=1.1e-08 Score=97.19 Aligned_cols=172 Identities=22% Similarity=0.251 Sum_probs=103.8
Q ss_pred HhhhhhhhhccccCccchHHHHHHHHHHHHHhhhccc-c----------------------c--ch---hhHHHHHHHHH
Q 018091 163 GYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL-G----------------------N--CV---EIGLPMLVLLV 214 (361)
Q Consensus 163 g~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~-~----------------------~--~~---~i~l~~l~v~i 214 (361)
|++|+ +++.|++|..|+..++..+|+.++...++.+ | + ++ .++..++++..
T Consensus 2 Gllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 2 GLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred ccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 66775 9999999999999999999997765433210 0 0 11 12222222222
Q ss_pred HHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccc-cccCCCCCcccCCCCCCcCCCc
Q 018091 215 ICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDR-SYLLSSAPWIKVPYPFQWGTPI 293 (361)
Q Consensus 215 ~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~-~~~~~~a~~f~~P~~~~fg~P~ 293 (361)
.. ++.++..+ ++...+....++.+++++++++.++... . .++. .+....-|.+.+|. . .
T Consensus 81 ~~-~~~~~~~~-~~~~~~~p~~li~vv~~~~~~~~~~~~~---~---------~v~~~~~i~~~lp~~~~p~-~-----~ 140 (280)
T PF00916_consen 81 II-RLLPKRLP-SRFWPPIPAPLIVVVLGTLLSWLFLLDK---Y---------GVAIVGEIPSGLPPPSLPS-F-----D 140 (280)
T ss_pred hh-hhhhhhcc-ccccccccccceeeehhhhhhhhhhhcc---c---------cccccccccccCccccCcc-c-----c
Confidence 22 22221111 1223345567888888888887774211 0 1111 11111122233331 0 3
Q ss_pred ccH----hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCCCCcc
Q 018091 294 FRA----SHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTA 359 (361)
Q Consensus 294 f~~----~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~tt~ 359 (361)
+|+ ..+...+.++++..+|++.+..++++..++ +.+.||++.+.|++|+++|+||++|.+..
T Consensus 141 ~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~----~~d~n~El~a~G~aNi~s~~~gg~p~~~s 206 (280)
T PF00916_consen 141 ISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGY----RIDPNQELIALGLANIVSGLFGGMPGSGS 206 (280)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhhhhhcccccc----cCCcHHHHHHhhhccccchhhcccccccc
Confidence 333 334455688889999999888877776553 34689999999999999999999999865
No 18
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.78 E-value=0.0015 Score=63.96 Aligned_cols=274 Identities=15% Similarity=0.184 Sum_probs=156.2
Q ss_pred ccccceecCCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcch------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018091 34 LQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGD------KGRVIQSLLFMSGLNTLLQTLFGTR 107 (361)
Q Consensus 34 ~~~~~~~~~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~------~~~~i~a~~~~~Gi~tllq~~~G~r 107 (361)
-+|..|+.+|-.|.. +|..--.+|++.. ....++.+|++++- ...++.+.+|+.=+++++.- .++
T Consensus 52 ~rD~rfE~ED~vPAl----AgtIGkivMvsAv---~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~an 122 (492)
T PF11840_consen 52 FRDYRFEWEDLVPAL----AGTIGKIVMVSAV---AAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RAN 122 (492)
T ss_pred CcccccchHHhhHHH----HhhhhHHHHHHHH---HHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--ccc
Confidence 456677888877733 3333334554432 22334446888762 23455555554444444333 467
Q ss_pred cceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHH
Q 018091 108 LPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVV 187 (361)
Q Consensus 108 lPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lI 187 (361)
++=-.||=. .+.|.. ...| +-+.++| +..|++-+++++++--+|+.++-..-|.|..+..+
T Consensus 123 LAGthgPmI-pLIp~i---vaaG-------------gHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllyl 183 (492)
T PF11840_consen 123 LAGTHGPMI-PLIPLI---VAAG-------------GHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYL 183 (492)
T ss_pred ccCCCCCcc-hhhHHH---HHcC-------------CCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeee
Confidence 766666644 222332 2222 2345555 45688889999998889999999998888777666
Q ss_pred HHHHHHhhhc----ccc--cchhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 018091 188 GLGLFMRGFP----LLG--NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPE 261 (361)
Q Consensus 188 Gl~l~~~~~~----~~~--~~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~ 261 (361)
|+.-.--.++ +.. +...++++.+.+.+++..++.++.| | ..++-++-+++-++++.+|.-
T Consensus 184 G~~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~~K---r---WLaIPl~~~~a~~~a~~lGa~-------- 249 (492)
T PF11840_consen 184 GFVGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKIEK---R---WLAIPLCSILAGVLAFALGAP-------- 249 (492)
T ss_pred hhhhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcc---c---hhhhhHHHHHHHHHHHHcCCC--------
Confidence 6532222222 111 2334666666666666666666533 2 356777777777778888741
Q ss_pred ccccccccccccc-----CCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHH----HHHHHHHHHHHhhhCCCC---C
Q 018091 262 QTKLSCRTDRSYL-----LSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTS----AESTGTFIAASRFAGATA---P 329 (361)
Q Consensus 262 ~~~~~~~~d~~~~-----~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~----~esig~~~av~~~~~~~~---~ 329 (361)
.||... ....=|..=-+-++.++|.+ ...+..+|+++... -|.+|+ ...++.+ +++ .
T Consensus 250 -------f~f~t~pglp~lnP~YWWge~tGw~LglP~~--~hfiav~PFAiLAVaMWSpDflgh-rvFqeln-ypk~~~k 318 (492)
T PF11840_consen 250 -------FEFTTEPGLPNLNPMYWWGEETGWQLGLPTL--EHFIAVLPFAILAVAMWSPDFLGH-RVFQELN-YPKETKK 318 (492)
T ss_pred -------ceeecCCCCCCCCCcccccCCcccccCCCcH--HHHHHhccHHHHHHHHhCchHHHH-HHHHHhc-Cchhhcc
Confidence 233210 11111211122345677764 34444444444332 377776 4455553 322 1
Q ss_pred CCccCCchhHHhhHHHHHhhhcCCCCCCccC
Q 018091 330 PAHVLSRSIGLQGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 330 ~~~~~~r~~~~~Gl~s~laglfG~~~~tt~s 360 (361)
..-+++..+....+=+++++.+|+-..++++
T Consensus 319 vlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW 349 (492)
T PF11840_consen 319 VLMNVDDTMTMCSIRQIVGSILGGGNIASSW 349 (492)
T ss_pred eeecccchhHHHHHHHHHhhcccCCcccccc
Confidence 2236899999999999999999998876653
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.12 Score=55.98 Aligned_cols=281 Identities=13% Similarity=0.151 Sum_probs=150.6
Q ss_pred HHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHH---HHHHHHhhcCCC
Q 018091 56 QHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTL---PVLSIINDYNDG 132 (361)
Q Consensus 56 Qh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~---~~~~i~~~~g~~ 132 (361)
...+.+|.+.+...+..++-++-.. +-..-++=+++...++.++.+++|..=-+++|.+.-.+. .+..+..+++.
T Consensus 364 a~~lfiYfa~l~P~ItFG~ll~~~T-dg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~- 441 (876)
T KOG1172|consen 364 AATLFIYFACLLPAITFGGLLGEAT-DGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL- 441 (876)
T ss_pred hHHHHHHHHhhhhHhhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC-
Confidence 4556666665544444444332222 334556678899999999999985444456666652222 22223333321
Q ss_pred CCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhc---------------
Q 018091 133 SFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFP--------------- 197 (361)
Q Consensus 133 ~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~--------------- 197 (361)
.-++-..=..+++.++.++++.+.. ..++++|+...=-.+=++|.+..+..++.
T Consensus 442 ----------dyl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~ 510 (876)
T KOG1172|consen 442 ----------DYLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDS 510 (876)
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 1122233346788888899998875 78888888755444444444445444433
Q ss_pred ----------ccc--------------cchhhHHHHHHHHHHHHHHhhhhcc------cchhhHhHHHHHHHHHHHHHHH
Q 018091 198 ----------LLG--------------NCVEIGLPMLVLLVICQQYLKRLHP------KAHFIVERFALLFCIGVVWAFA 247 (361)
Q Consensus 198 ----------~~~--------------~~~~i~l~~l~v~i~l~~~~k~~~~------~~~~~~~~~aiLigivvG~~~a 247 (361)
... ++..++++..+..+.+..++|++.+ +.++++.=|++.++|++-+.+.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~ 590 (876)
T KOG1172|consen 511 KPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLID 590 (876)
T ss_pred cCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHH
Confidence 000 1223444444445556667777654 3345666678999999999988
Q ss_pred HHHHhhcCCCCCcccccccccccccccCCC-CCcccCCCCCCcCCCccc-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 018091 248 AILTAAGAYNNVPEQTKLSCRTDRSYLLSS-APWIKVPYPFQWGTPIFR-ASHVFGMIGAALVTSAESTGTFIAASRFAG 325 (361)
Q Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~-a~~f~~P~~~~fg~P~f~-~~~i~~~~~~~lv~~~esig~~~av~~~~~ 325 (361)
+..+... .++... +..+...-.. -.|+-.|. ...|-++ ..++++.+.+++.-++|+-=+..-++|. +
T Consensus 591 ~~~~~~~-~~kl~v------p~~~~~t~~~~rgw~v~~~---~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e 659 (876)
T KOG1172|consen 591 YFGGSVE-TPKLPV------PSVFPPTWPFDRGWFVPPF---GKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-E 659 (876)
T ss_pred hhccccC-CCcccc------CcCCCCCCcccCCeeeCCC---CCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-c
Confidence 8876321 011000 0011110011 24543331 1123222 2444455566666666643221222221 1
Q ss_pred CCCCCCccCCchhHHhhHHHHHhhhcCCCCCCccC
Q 018091 326 ATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 326 ~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~tt~s 360 (361)
++-.+.....=-+..-|+.+.++|+||-...++..
T Consensus 660 ~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~ 694 (876)
T KOG1172|consen 660 NKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAAT 694 (876)
T ss_pred ccCCCCcchhHHHHHHHHHHHHHHhcCCCcccccc
Confidence 12222334556789999999999999988876653
No 20
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=97.31 E-value=0.22 Score=54.82 Aligned_cols=252 Identities=13% Similarity=0.100 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccee-eccccchHHHHHH---HHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHH
Q 018091 87 IQSLLFMSGLNTLLQTLFGTRLPTV-MGPSAAFTLPVLS---IINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVL 162 (361)
Q Consensus 87 i~a~~~~~Gi~tllq~~~G~rlPiv-~gps~a~~~~~~~---i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~ll 162 (361)
++=++++++++.++++++ +.-|+. .|.+.-...--.+ +...++. .-++...=..++++++.+++
T Consensus 403 v~E~Llstai~Giifslf-~GQPL~IlG~TGPilvF~~~ly~~c~~~~~-----------~yl~~~~WigiW~~~~~~ll 470 (900)
T TIGR00834 403 VSELLISTAVQGVLFALL-AAQPLLVVGFSGPLLVFEEAFFSFCESNGL-----------EYLVGRVWIGLWLVLLVLLL 470 (900)
T ss_pred HHHHHHHHHHHHHHHhhh-cCCceEEecCcccHHHHHHHHHHHHhhcCC-----------chHHHHHHHHHHHHHHHHHH
Confidence 456788999999999998 556654 5666522221112 2222210 11222233467888899999
Q ss_pred HhhhhhhhhccccCccchHHHHHHHHHHHHHhhhccc-------------------------------------------
Q 018091 163 GYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLL------------------------------------------- 199 (361)
Q Consensus 163 g~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~------------------------------------------- 199 (361)
+.+.. ..++|+++...--.+-++|++..+..+++.+
T Consensus 471 a~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (900)
T TIGR00834 471 VATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTL 549 (900)
T ss_pred HHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccccc
Confidence 99886 7889999986665555566654554443210
Q ss_pred -----ccchhhHH---HHHHHHHHHHHHhhhhcc------cchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccc
Q 018091 200 -----GNCVEIGL---PMLVLLVICQQYLKRLHP------KAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKL 265 (361)
Q Consensus 200 -----~~~~~i~l---~~l~v~i~l~~~~k~~~~------~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~ 265 (361)
......++ +..+.++.+..++|++.+ +.++++.=+++.++|++-+.+.+.++.+.. +....
T Consensus 550 ~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~~-~kl~V---- 624 (900)
T TIGR00834 550 GGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYT-QKLSV---- 624 (900)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCcc-cccCC----
Confidence 00012222 222233444445555432 234556667899999999988887652210 10000
Q ss_pred ccccccccc-CCCCCcccCCCCCCcCCCccc-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhH
Q 018091 266 SCRTDRSYL-LSSAPWIKVPYPFQWGTPIFR-ASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGI 343 (361)
Q Consensus 266 ~~~~d~~~~-~~~a~~f~~P~~~~fg~P~f~-~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl 343 (361)
.-.|... ...-.|+--|.......|.+. +.++++.+.+++.-++|+-=+..-+++-. ++-.+....+=-+..-|+
T Consensus 625 --p~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e-~kLkKgsgyH~Dllllg~ 701 (900)
T TIGR00834 625 --PSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKE-RKLKKGSGFHLDLLLVVG 701 (900)
T ss_pred --CCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCcc-ccCCCCcccchHHHHHHH
Confidence 0011110 011355522210000113332 35555666666667776443322222211 111222345667889999
Q ss_pred HHHHhhhcCCCCCCcc
Q 018091 344 GMLVEGIFGSVVGTTA 359 (361)
Q Consensus 344 ~s~laglfG~~~~tt~ 359 (361)
.+.++|+||-...++.
T Consensus 702 ~~~v~sllGLPw~~aa 717 (900)
T TIGR00834 702 MGGVAALFGLPWLSAA 717 (900)
T ss_pred HHHHHHhcCCCccccc
Confidence 9999999998877655
No 21
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=83.45 E-value=26 Score=35.35 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=82.3
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHH
Q 018091 74 PLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLI 153 (361)
Q Consensus 74 ~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~i 153 (361)
++.|.+.. +...+...|++|++-+.+|. .++..+ ....++... .. .|++ ...=.++-+
T Consensus 248 ~aaGy~~p-----~~~~~~~tGl~sll~ApfGg-~~~nla------aitaAic~G-----~~----ah~d-~~rR~~a~i 305 (395)
T TIGR00843 248 KAAGYNAP-----AKPIIAAAGLAALFAAFAGG-ISIGIA------AITAAICMG-----KD----AHED-KDKRWIAAA 305 (395)
T ss_pred HHcCCCCC-----chHHHHHHHHHHHHHhccCC-chhhhh------HHhHHHhcC-----cc----cccC-cCccchHHH
Confidence 44566543 36677889999999998853 332111 111122211 10 1111 334457788
Q ss_pred HHHHHHHHHHhh-hhhhhhccccCccchHHHHHHHHHHHHHhhhcc----cc--cchhhHHHHHHHHHHHHHHhhhhccc
Q 018091 154 VSSFINIVLGYS-GAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPL----LG--NCVEIGLPMLVLLVICQQYLKRLHPK 226 (361)
Q Consensus 154 vsGli~~llg~~-gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~----~~--~~~~i~l~~l~v~i~l~~~~k~~~~~ 226 (361)
++|++++++|++ +....+...+|+..+... -|+-+.+.-.++ +. ++-.-+++++++.. .|+
T Consensus 306 ~~Gv~yll~glfag~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~~~~~r~~a~~tflvta------Sg~--- 373 (395)
T TIGR00843 306 AAGIFYLLAGLFAGAITALFAALPKELIAAL---AGLALLGAIAGNIKIALHEDQERDAALIAFLATA------SGL--- 373 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH------hcC---
Confidence 999999999998 777889999999876532 444444432222 21 23445566666543 222
Q ss_pred chhhHhHHHHHHHHHHHHHHHH
Q 018091 227 AHFIVERFALLFCIGVVWAFAA 248 (361)
Q Consensus 227 ~~~~~~~~aiLigivvG~~~a~ 248 (361)
.++...+-.+|+++|.+...
T Consensus 374 --~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 374 --HFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred --CcccccHHHHHHHHHHHHHH
Confidence 23456899999999987654
No 22
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=81.03 E-value=1.9 Score=44.79 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccccCCC-CCcccCCCCCCcCCCccc-HhHHHHHHHH
Q 018091 228 HFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSS-APWIKVPYPFQWGTPIFR-ASHVFGMIGA 305 (361)
Q Consensus 228 ~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~-a~~f~~P~~~~fg~P~f~-~~~i~~~~~~ 305 (361)
++++.=+++.+++++-+.+...++ .. .++-.. ..++...... -.|+--| + ...|.+. ..++++.+.+
T Consensus 277 R~~isDf~v~iaI~~~~~~~~~~~-~~-~~kL~v------p~~f~pt~~~~r~W~v~p--~-~~~p~w~~~aA~~palll 345 (510)
T PF00955_consen 277 REIISDFGVPIAILIMTLVDYLFG-VD-TPKLNV------PSSFKPTSPGKRGWFVNP--F-GSLPWWAIFAAIIPALLL 345 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHhc-cc-ccccCC------CCCCCCCCCCCCCeecCc--c-cCCCHHHHHHHHHHHHHH
Confidence 455666789999999888877765 21 111000 0012210111 2455323 1 1224333 2344444555
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCCCCcc
Q 018091 306 ALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTA 359 (361)
Q Consensus 306 ~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~tt~ 359 (361)
++.-++|+-=+..-+++.. ++-.+.....=.+..-|+-+.++|++|-...++.
T Consensus 346 ~iL~F~DqnIts~ivn~~e-~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa 398 (510)
T PF00955_consen 346 TILFFMDQNITSLIVNRPE-NKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAA 398 (510)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHhHhHHHhCChh-hccCCCCcccHHHHHHHHHHHHHHHcCCCCcccC
Confidence 5555665322211122211 1111223345567889999999999997766554
No 23
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=59.48 E-value=1.3e+02 Score=30.43 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhh
Q 018091 86 VIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS 165 (361)
Q Consensus 86 ~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~ 165 (361)
-+...+++-|+++++-+++|. .|.-. |.- -..+.+.- +...-. +..++|++.++++++
T Consensus 270 ~~~r~l~adGl~~i~aglfG~-~p~t~-----~se-n~g~~~~T--------------~~~sr~-~~~~~a~~~i~~~l~ 327 (415)
T TIGR00801 270 RLHRGVLADGLATLLAGLFGG-FPNTT-----FAQ-NIGVIALT--------------RVASRW-VIVGAAVILIALGFF 327 (415)
T ss_pred cccchHHHhhHHHHHHHhcCC-CCCcc-----hhh-hheeeeec--------------CCCchH-HHHHHHHHHHHHHHH
Confidence 356788999999999999874 66521 110 00111110 111112 567888889999988
Q ss_pred hhhhhhccccCccchHHHHH
Q 018091 166 GAWGNLARFFSPIVIVPFVC 185 (361)
Q Consensus 166 gl~~~l~~~~Pp~ViG~~v~ 185 (361)
.-+..+...+|..|+|...+
T Consensus 328 pk~~~l~~~iP~~vlgg~~l 347 (415)
T TIGR00801 328 PKIAALITSIPSPVLGGASI 347 (415)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 66888999999998876544
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=59.25 E-value=11 Score=40.91 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=10.2
Q ss_pred ccccceecCC---CCChHH
Q 018091 34 LQQLQYCIHS---NPPWPQ 49 (361)
Q Consensus 34 ~~~~~~~~~e---~pp~~~ 49 (361)
+.++.|+++- |.+|.+
T Consensus 615 kpKK~~k~e~~Mrr~nW~k 633 (1102)
T KOG1924|consen 615 KPKKVYKPEVPMRRFNWSK 633 (1102)
T ss_pred CccccCCCCCccccCCccc
Confidence 6677787664 445664
No 25
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=56.03 E-value=2.2e+02 Score=28.44 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhh
Q 018091 86 VIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS 165 (361)
Q Consensus 86 ~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~ 165 (361)
=+...+..-|+++++-+++| ..|... + ..-. .+.+..+. .. --+.+++|++.++++++
T Consensus 254 ~~~~~l~~~Gi~~i~aglfG-~~p~t~---~--~~~~-~~~~~tg~--------------~s-r~~~~~~~~~lil~~l~ 311 (406)
T TIGR03173 254 DLAGGLRADGLGSALGGLFN-TFPYTS---F--SQNV-GLVQLTGV--------------KS-RYVVAAAGVILVLLGLF 311 (406)
T ss_pred hccchHHhccHHHHHHHHhC-CCCCcc---h--hhhH-HHHHHhCC--------------Cc-hHhHHHHHHHHHHHHHH
Confidence 35677899999999999987 477431 1 1111 11111110 01 11236788888888887
Q ss_pred hhhhhhccccCccchHHHH
Q 018091 166 GAWGNLARFFSPIVIVPFV 184 (361)
Q Consensus 166 gl~~~l~~~~Pp~ViG~~v 184 (361)
+.+..+...+|..|+|.+.
T Consensus 312 ~~~~~l~~~iP~~vlgg~~ 330 (406)
T TIGR03173 312 PKLAALVASIPQPVLGGAG 330 (406)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 7678999999999988743
No 26
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=53.46 E-value=50 Score=25.72 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHHHhhHhHHHHHHHh--hcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeecccc
Q 018091 46 PWPQALLLAFQHYIVMLGTTVLISSTLVP--LMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSA 116 (361)
Q Consensus 46 p~~~~i~~GlQh~l~m~~~~vvvP~il~~--a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~ 116 (361)
-+++.+++|++-.+.. +|.-++- .+|+++ ...+..+.+..++.+++|.+.-++.||+.
T Consensus 15 ~~~~D~~aGltva~~~------iPq~~a~A~lAg~pp-------~~GLy~a~~~~liyalfG~s~~~~~Gp~a 74 (84)
T PF13792_consen 15 NLRGDLLAGLTVALVA------IPQGMAYALLAGVPP-------IYGLYAAIIPPLIYALFGSSRHMIVGPTA 74 (84)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCC-------CeeeHHHHHHHHHHhhccCCCccccChHH
Confidence 3678999999865444 5555554 368887 67788888999999999888888889876
No 27
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=49.36 E-value=71 Score=33.08 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHH--HHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHH
Q 018091 83 KGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTL--PVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINI 160 (361)
Q Consensus 83 ~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~--~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~ 160 (361)
....++..+..=|+++++-+++|..- |.+. +.- ..+.+. ..+. =+ .+-+++.+++
T Consensus 303 P~~~inRgi~~eGig~lL~gl~G~gt----G~Tt-~~ENigll~vT-KVgS-------------Rr----vvQ~aa~fmI 359 (510)
T KOG1292|consen 303 PPSVLNRGIGWEGIGSLLAGLFGTGT----GSTT-SVENIGLLGVT-KVGS-------------RR----VVQIAAGFMI 359 (510)
T ss_pred ChhhhhhhhhhhhHHHHHHHhhCCCc----ccee-eccceeeEeee-eeee-------------ee----ehhhhHHHHH
Confidence 46788899999999999999987432 2221 000 000000 0110 01 1346778888
Q ss_pred HHHhhhhhhhhccccCccchHHHHHHHHHHH-HHhhhccc-------ccchhhHHHHHHHHHHHHHHhhhhc---ccchh
Q 018091 161 VLGYSGAWGNLARFFSPIVIVPFVCVVGLGL-FMRGFPLL-------GNCVEIGLPMLVLLVICQQYLKRLH---PKAHF 229 (361)
Q Consensus 161 llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l-~~~~~~~~-------~~~~~i~l~~l~v~i~l~~~~k~~~---~~~~~ 229 (361)
++|.+|=++.+...||-.++|.+.+. ++.. ...+++++ .-|..+-.+.+..-+...+|.++-. ++..+
T Consensus 360 ~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~~~~v~Tg~~ 438 (510)
T KOG1292|consen 360 FFGIFGKFGAFFASIPDPIVGGLLCI-LFGMVGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQYPGPVHTGNG 438 (510)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHHHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhCCCccccCcH
Confidence 99988878899999998777765432 2221 22333332 1233332223333333344555443 22223
Q ss_pred hHhHH-HHH--HHHHHHHHHHHHHHhh
Q 018091 230 IVERF-ALL--FCIGVVWAFAAILTAA 253 (361)
Q Consensus 230 ~~~~~-aiL--igivvG~~~a~~~g~~ 253 (361)
++-.. .++ .-+.+|-++|++++-+
T Consensus 439 ~~d~ilnvll~~~m~Vggi~A~~LDnt 465 (510)
T KOG1292|consen 439 WFDDILNVLLSSRMLVGGILAFILDNT 465 (510)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence 32222 333 4577888888888643
No 28
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=49.29 E-value=2e+02 Score=26.01 Aligned_cols=30 Identities=7% Similarity=0.248 Sum_probs=20.0
Q ss_pred hhhhccccCc-------cchHHHHHHHHHHHHHhhhc
Q 018091 168 WGNLARFFSP-------IVIVPFVCVVGLGLFMRGFP 197 (361)
Q Consensus 168 ~~~l~~~~Pp-------~ViG~~v~lIGl~l~~~~~~ 197 (361)
-+++.|++.+ -+.|.+++.||++.+-.|+.
T Consensus 164 a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl~ 200 (203)
T PF01914_consen 164 ADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSGLR 200 (203)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777776 34677777777776655543
No 29
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=47.28 E-value=12 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.017 Sum_probs=8.2
Q ss_pred chhHHhhHHHHHhhhcCC
Q 018091 336 RSIGLQGIGMLVEGIFGS 353 (361)
Q Consensus 336 r~~~~~Gl~s~laglfG~ 353 (361)
.--.++=++++++|+=++
T Consensus 187 a~G~aNi~s~~~gg~p~~ 204 (280)
T PF00916_consen 187 ALGLANIVSGLFGGMPGS 204 (280)
T ss_pred Hhhhccccchhhcccccc
Confidence 334444445555544433
No 30
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=46.66 E-value=3.2e+02 Score=27.49 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=77.4
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHH
Q 018091 70 STLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQ 149 (361)
Q Consensus 70 ~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ 149 (361)
+-+-++.|.++. ....+..+|+++++.+.+|. .++. .-....++....+. -.|++.+|
T Consensus 228 ~aVL~a~GY~~p-----~~~~~~~tGl~s~l~ApfGg-~~~n------lAaitaAIc~g~ea--h~dp~rRy-------- 285 (378)
T PF03594_consen 228 IAVLRAAGYQPP-----VNPLITVTGLASLLAAPFGG-HAVN------LAAITAAICAGPEA--HPDPSRRY-------- 285 (378)
T ss_pred HHHHHHcCCCCC-----chHHHHHHHHHHHHHhhhch-hhhH------HHHHHHHHHcCCcc--CCCcccch--------
Confidence 333455676553 34556789999999998742 1111 11222334322110 01122222
Q ss_pred HHHHHHHHHHHHHHhhhh-hhhhccccCccchHHHHHHHHHHHHHhhhcc----cc--cchhhHHHHHHHHHHHHHHhhh
Q 018091 150 GSLIVSSFINIVLGYSGA-WGNLARFFSPIVIVPFVCVVGLGLFMRGFPL----LG--NCVEIGLPMLVLLVICQQYLKR 222 (361)
Q Consensus 150 Ga~ivsGli~~llg~~gl-~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~----~~--~~~~i~l~~l~v~i~l~~~~k~ 222 (361)
-+-+.+|++++++|++.- .-.+...+|+..+.. +-|+-+.+.-.+. +. ++-.-+++++++.. .|
T Consensus 286 ~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~---lAGLALlg~l~~sl~~A~~~~~~r~aAlvtFlvta------SG 356 (378)
T PF03594_consen 286 IAAVAAGVFYLLFGLFAAALVALFAALPPALIAA---LAGLALLGTLGGSLQTAFSDEKYREAALVTFLVTA------SG 356 (378)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH------cC
Confidence 345688999999998642 234667778766553 3444444432222 22 23344556655533 33
Q ss_pred hcccchhhHhHHHHHHHHHHHHHHHH
Q 018091 223 LHPKAHFIVERFALLFCIGVVWAFAA 248 (361)
Q Consensus 223 ~~~~~~~~~~~~aiLigivvG~~~a~ 248 (361)
+ .++...+-.+|+++|.++..
T Consensus 357 i-----sl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 357 I-----SLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred C-----CcccccHHHHHHHHHHHHHh
Confidence 2 23556899999999998753
No 31
>PRK11660 putative transporter; Provisional
Probab=45.62 E-value=3.9e+02 Score=28.16 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 018091 88 QSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGA 167 (361)
Q Consensus 88 ~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl 167 (361)
..-+++-|++.++-+++ ..+|.....+- . ++....| -+.-..+++.+.++.+.+-+
T Consensus 314 n~EL~a~G~aNi~~~~f-gg~p~~~s~sr----S--a~n~~aG--------------arT~la~iv~a~~~ll~ll~--- 369 (568)
T PRK11660 314 NSELVGQGLGNIVAPFF-GGITATAAIAR----S--AANVRAG--------------ATSPISAVIHALLVLLALLV--- 369 (568)
T ss_pred cHHHHHHhHHHHHHHHh-CcccccchHHH----H--HHHHhcC--------------CCcHHHHHHHHHHHHHHHHH---
Confidence 45567889999999987 45775322111 1 1221222 11222333333333333222
Q ss_pred hhhhccccCccchHHHHHHHHHHHHHh
Q 018091 168 WGNLARFFSPIVIVPFVCVVGLGLFMR 194 (361)
Q Consensus 168 ~~~l~~~~Pp~ViG~~v~lIGl~l~~~ 194 (361)
...+.+++|..+.+.++..+|+.++..
T Consensus 370 l~~ll~~iP~~vLa~ili~~~~~m~~~ 396 (568)
T PRK11660 370 LAPLLSYLPLSAMAALLLMVAWNMSEA 396 (568)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhhhH
Confidence 356789999999999999999987653
No 32
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=44.06 E-value=3.6e+02 Score=27.30 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=25.2
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 018091 73 VPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPT 110 (361)
Q Consensus 73 ~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~----~G~rlPi 110 (361)
.+..|+++.|........++...++.++.+. +|.|..+
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~ 104 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS 104 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 3457999888776665555666677777764 5666544
No 33
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=43.56 E-value=21 Score=38.90 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=3.4
Q ss_pred hhhccccC
Q 018091 169 GNLARFFS 176 (361)
Q Consensus 169 ~~l~~~~P 176 (361)
.-|++..|
T Consensus 736 qnLik~lP 743 (1102)
T KOG1924|consen 736 QNLIKHLP 743 (1102)
T ss_pred HHHHHhCC
Confidence 33444444
No 34
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=42.72 E-value=96 Score=27.62 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=14.2
Q ss_pred cccccCCCCCcccCCCCCCcCCCcccHhHHHH
Q 018091 270 DRSYLLSSAPWIKVPYPFQWGTPIFRASHVFG 301 (361)
Q Consensus 270 d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i~~ 301 (361)
|+.-.++..|.+++| .|-...|+...+..
T Consensus 78 dyP~~iGGKP~~S~P---afipi~FEltVL~a 106 (173)
T PF11821_consen 78 DYPLNIGGKPLFSWP---AFIPITFELTVLFA 106 (173)
T ss_pred ccceecCCCCCCCCc---ccchHHHHHHHHHH
Confidence 444335556777776 33222455544433
No 35
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=40.08 E-value=26 Score=35.50 Aligned_cols=16 Identities=56% Similarity=1.184 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 018091 4 TAGHHPPPPPQAAPPS 19 (361)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (361)
++|--|||||+++||.
T Consensus 231 s~~g~PPPPPP~PPp~ 246 (480)
T KOG2675|consen 231 SAPGAPPPPPPAPPPA 246 (480)
T ss_pred cCCCCCCCCCCCCCCc
Confidence 4555666666655554
No 36
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=37.58 E-value=5e+02 Score=27.12 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=70.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcce---eeccccc
Q 018091 41 IHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPT---VMGPSAA 117 (361)
Q Consensus 41 ~~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPi---v~gps~a 117 (361)
+.++|..+..+..++-..+.........|++..+..|.++.....+..+.-+.+-+++++...+..|++- +.....
T Consensus 214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~- 292 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL- 292 (524)
T ss_pred HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH-
Confidence 3445566666555555444443444557888877789988888887777777777777777765444431 111111
Q ss_pred hHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHH
Q 018091 118 FTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFV 184 (361)
Q Consensus 118 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v 184 (361)
.........+ .. .....+..+.++.|....+.-. ...-.+.+..|+.+.|=+.
T Consensus 293 ~~a~~~~~la-l~------------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 293 LFALALLLLA-LS------------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVF 345 (524)
T ss_pred HHHHHHHHHh-cc------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHH
Confidence 1111111111 10 2233455566667765554432 2334567778877666543
No 37
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=36.62 E-value=4.8e+02 Score=26.66 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhh
Q 018091 86 VIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS 165 (361)
Q Consensus 86 ~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~ 165 (361)
-+...+.+-|++|++-+++| -.|...=+.. .....+. +. .- -=.+.++|++.+++|++
T Consensus 276 ~l~rgi~~dGi~s~laglfg-~~p~tt~sqN---vGvi~~T---gV------------~S---R~v~~~aa~ilillgl~ 333 (433)
T PRK11412 276 RYRRSFVATGFMTLITVPLA-VIPFSPFVSS---IGLLTQT---GD------------YR---RRSFIYGSVMCLLVALI 333 (433)
T ss_pred ccccchhhccHHHHHHHhcC-CCCCCchhhh---hhhhhhc---CC------------ch---hHHHHHHHHHHHHHHHH
Confidence 46778999999999999986 5554211111 0111111 10 00 11356778889999998
Q ss_pred hhhhhhccccCccchHHHH
Q 018091 166 GAWGNLARFFSPIVIVPFV 184 (361)
Q Consensus 166 gl~~~l~~~~Pp~ViG~~v 184 (361)
+-+..+..-+|..|+|...
T Consensus 334 PK~~alia~IP~pVlGg~~ 352 (433)
T PRK11412 334 PALTRLFCSIPLPVSSAVM 352 (433)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 8788899999999987654
No 38
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=34.08 E-value=97 Score=30.05 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH----hCCCcceee
Q 018091 42 HSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVM 112 (361)
Q Consensus 42 ~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~----~G~rlPiv~ 112 (361)
+++.+....+...+-..+.......+.|..+.+..|.++.+.........+...+..++-+. +|.|..+..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF 86 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence 44444333333333333333223334555556667999888888888888888888887775 466665443
No 39
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=33.48 E-value=3.4e+02 Score=27.00 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcC
Q 018091 51 LLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYN 130 (361)
Q Consensus 51 i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g 130 (361)
++.-+...++.....+-.-..+++..|.++++ ..-+...+..-|++|++-+++|. .|...-. --.-.+..+ +
T Consensus 234 i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~-~~~~~r~l~~dg~~~~l~gl~G~-~~~t~~~-----en~g~i~~t-~ 305 (389)
T PF00860_consen 234 ILTFLIFALVAMFESIGTIVAVARIAGKDDPR-PPRIRRGLLADGLGTILAGLFGT-SPTTTYS-----ENAGGIAAT-G 305 (389)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCC-CCCHHHHHHHHHHHHHHHHHHT----EEE-H-----HHHHHHHHH-T
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCCcc-chhhcccceeeeeeeeechhhcC-CCCcccc-----ccchhhhhh-c
Confidence 33334443444444443344444545655543 44468888999999999999987 5543211 111111111 1
Q ss_pred CCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchH-HHHHHHHH
Q 018091 131 DGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIV-PFVCVVGL 189 (361)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG-~~v~lIGl 189 (361)
. .+ -=..+.++++.+++++...+..+...+|..|+| ..+.+.|.
T Consensus 306 v-----------~S----r~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 306 V-----------AS----RRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp B-----------------HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred c-----------cc----ceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 0 00 114567778888888887788899999998864 44444443
No 40
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=32.61 E-value=5.5e+02 Score=28.23 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=29.3
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHH----hCCCcceee
Q 018091 75 LMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVM 112 (361)
Q Consensus 75 a~gl~~~~~~~~i~a~~~~~Gi~tllq~~----~G~rlPiv~ 112 (361)
..|++..+...+.+..+++..+++++.++ +|.|..++.
T Consensus 196 ~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii 237 (742)
T TIGR01299 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237 (742)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 37899888888888888888999988886 566655444
No 41
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=31.50 E-value=89 Score=24.93 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=22.5
Q ss_pred HHhhhhcccchhhHhHHHHHHHHHHHHHHHHHH
Q 018091 218 QYLKRLHPKAHFIVERFALLFCIGVVWAFAAIL 250 (361)
Q Consensus 218 ~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~ 250 (361)
+..|+-.+-+++++...++++|+++|.+.++..
T Consensus 23 q~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~ 55 (93)
T PF06946_consen 23 QAIKKTKVVPNKWIPLISVVIGILLGAAAYPLT 55 (93)
T ss_pred HHHHHhccCCcchhhHHHHHHHHHHHHHhhhcC
Confidence 345554333577888889999999888765443
No 42
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=30.80 E-value=2.7e+02 Score=23.98 Aligned_cols=93 Identities=5% Similarity=0.045 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCc--cchHHHHHHHHHHHHHhhhcccc--------cchhhHHHHHHHHHHHHH-Hh
Q 018091 152 LIVSSFINIVLGYSGAWGNLARFFSP--IVIVPFVCVVGLGLFMRGFPLLG--------NCVEIGLPMLVLLVICQQ-YL 220 (361)
Q Consensus 152 ~ivsGli~~llg~~gl~~~l~~~~Pp--~ViG~~v~lIGl~l~~~~~~~~~--------~~~~i~l~~l~v~i~l~~-~~ 220 (361)
+.++..+..++-++++-+++..++-. .=.|.++..+++ +.|.+-...+ .+| .++..+..-+.... -.
T Consensus 18 i~iAa~vLL~lk~~~l~~~~~p~le~~Gl~~GiiiLtiai-LvPiAtGki~~~~l~~~f~s~-~g~~Ai~~Gilva~l~g 95 (140)
T PF04284_consen 18 IAIAACVLLILKLLPLDQYIFPFLEKKGLNWGIIILTIAI-LVPIATGKIGFKDLLNSFKSW-KGIIAILAGILVAWLGG 95 (140)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHhChhHhHHHHHHHH-HccccCCCcCHHHHHHHHhCH-HHHHHHHHHHHHHHHhc
Confidence 44556666666655432221222222 335777777765 6777665543 122 23333322221111 22
Q ss_pred hhhcccchhhHhHHHHHHHHHHHHHHHHHH
Q 018091 221 KRLHPKAHFIVERFALLFCIGVVWAFAAIL 250 (361)
Q Consensus 221 k~~~~~~~~~~~~~aiLigivvG~~~a~~~ 250 (361)
||+.- .-.++-+..|+++|++++..+
T Consensus 96 ~Gv~L----l~~~P~v~~gLviGTIiGV~f 121 (140)
T PF04284_consen 96 RGVNL----LKVQPQVIVGLVIGTIIGVAF 121 (140)
T ss_pred cChHH----HccCChhhHHHHHHHHHHHHH
Confidence 33211 112356899999999998776
No 43
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=29.43 E-value=2.4e+02 Score=25.98 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=36.4
Q ss_pred hhhhhcc-ccCccchHHHHHHHHHHHHHhhhccc--cc---chhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHH
Q 018091 167 AWGNLAR-FFSPIVIVPFVCVVGLGLFMRGFPLL--GN---CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCI 240 (361)
Q Consensus 167 l~~~l~~-~~Pp~ViG~~v~lIGl~l~~~~~~~~--~~---~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigi 240 (361)
+.+|.++ ++.|..+...+...-+.+...-.++. +. ++.++-.++.+.+=+.+..+.+.| +..+++.++
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~~i~y~~Y~~gg~~l~~lLgPatVALAvPLY~~~~~l~~------~~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLTGIPYEDYMQGGDILSFLLGPATVALAVPLYRQRRLLKK------NWIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 4456554 45566666554444333333322221 12 344454555554544333333311 123566666
Q ss_pred HHHHHHHHHH
Q 018091 241 GVVWAFAAIL 250 (361)
Q Consensus 241 vvG~~~a~~~ 250 (361)
.+|.+++...
T Consensus 85 ~~g~~~~~~~ 94 (215)
T PF04172_consen 85 LVGSLVSIFS 94 (215)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 44
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.63 E-value=6.7e+02 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=23.9
Q ss_pred CCCCccCCchhHHhhHHHHHhhhcCCCCCCcc
Q 018091 328 APPAHVLSRSIGLQGIGMLVEGIFGSVVGTTA 359 (361)
Q Consensus 328 ~~~~~~~~r~~~~~Gl~s~laglfG~~~~tt~ 359 (361)
..+.++.+|.....=-+++++.++|..|.+..
T Consensus 241 ~~s~~~~~~~~~~~lRgt~iG~~~GvlPg~Ga 272 (504)
T COG3333 241 WLSKKEFKRAWPTWLRGTLIGFLLGVLPGGGA 272 (504)
T ss_pred ccCHHHHHHhhHHHHHHhhhhhheecccCccH
Confidence 34556677777777778888889998887653
No 45
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=27.26 E-value=34 Score=17.90 Aligned_cols=7 Identities=71% Similarity=1.493 Sum_probs=5.0
Q ss_pred CCCCCCC
Q 018091 12 PPQAAPP 18 (361)
Q Consensus 12 ~~~~~~~ 18 (361)
|||++||
T Consensus 8 pPQ~~Pp 14 (15)
T PF02162_consen 8 PPQGYPP 14 (15)
T ss_pred CCCCCCC
Confidence 5777776
No 46
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=25.66 E-value=8e+02 Score=25.76 Aligned_cols=81 Identities=11% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 018091 89 SLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAW 168 (361)
Q Consensus 89 a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~ 168 (361)
.-+++.|++.++-+++ ..+|...+.|-. ++..+.|.. ..+.. ++++++..++.++ .
T Consensus 295 ~El~a~G~~N~~~~~f-g~~p~~~s~srs------~~~~~~G~~----------t~~a~-----i~~~~~~l~~~l~--~ 350 (563)
T TIGR00815 295 QELVAQGIANIVGSFF-SCYPATGSLSRT------AVNAKAGCR----------TQLSG-----VVTAIVVLLVLLV--L 350 (563)
T ss_pred HHHHHhhHHHHHHHHh-CccCCCCcchHH------HHHHhcCCc----------chHHH-----HHHHHHHHHHHHH--H
Confidence 4467889999999987 457765444321 112122211 12333 3344443333332 3
Q ss_pred hhhccccCccchHHHHHHHHHHHHH
Q 018091 169 GNLARFFSPIVIVPFVCVVGLGLFM 193 (361)
Q Consensus 169 ~~l~~~~Pp~ViG~~v~lIGl~l~~ 193 (361)
..+.+++|..+.+.++..+++.+..
T Consensus 351 ~~~l~~iP~~~la~ili~~~~~l~~ 375 (563)
T TIGR00815 351 TPLFYYIPQAALAAIIISAVRGLID 375 (563)
T ss_pred HHHHHhChHHHHHHHHHHHHhcccC
Confidence 4678899999999999999887653
No 47
>COG2985 Predicted permease [General function prediction only]
Probab=24.52 E-value=1.6e+02 Score=30.75 Aligned_cols=26 Identities=35% Similarity=0.668 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccCccc
Q 018091 151 SLIVSSFINIVLGYSGAWGNLARFFSPIV 179 (361)
Q Consensus 151 a~ivsGli~~llg~~gl~~~l~~~~Pp~V 179 (361)
+-++++++ +|+.|-.+++--++||..
T Consensus 400 GpLivaLi---LG~ig~iGpl~w~mP~~A 425 (544)
T COG2985 400 GPLIVALI---LGFIGAIGPLTWFMPPGA 425 (544)
T ss_pred cHHHHHHH---HHHhcccCceEEEcChhH
Confidence 34555554 555556688999999855
No 48
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=23.80 E-value=7.8e+02 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhhhhccccCccchHHHHH
Q 018091 145 IRTIQGSLIVSSFINIVLGYSG--AWGNLARFFSPIVIVPFVC 185 (361)
Q Consensus 145 ~~~~~Ga~ivsGli~~llg~~g--l~~~l~~~~Pp~ViG~~v~ 185 (361)
+-+.+=+.+++|-+ +|.-| +.+-+.|+|||.+.|.+-+
T Consensus 112 FL~fyIA~LI~GSI---LgmnRklLIk~~~~~i~~il~g~v~A 151 (438)
T COG3493 112 FLDFYIAALIVGSI---LGMNRKLLIKSLKRYIPPILAGMVGA 151 (438)
T ss_pred hHHHHHHHHHHhhh---hhccHHHHHHHHHhhhHHHHHHHHHH
Confidence 44445455555543 33321 3466899999988876544
No 49
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=23.26 E-value=9e+02 Score=25.55 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhh
Q 018091 49 QALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIND 128 (361)
Q Consensus 49 ~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~ 128 (361)
+.+..++.-.+..+.-++...-.+....|. +.|.. .=+++-|++-++-+++ ..+|.--+.+- .. +-.+
T Consensus 249 ~l~~~al~la~lg~iesllta~~~~~~~~~-~~d~n----rELiaqGiaNi~sglf-gg~p~~g~~sr----S~--~nv~ 316 (554)
T COG0659 249 ALLPYALALALLGLLESLLTAVSFDGMTGT-KHDSN----RELIAQGIANIASGLF-GGIPATGSISR----SA--INIK 316 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCC----HHHHHhhHHHHHHHHh-CCccccchhHH----HH--HHHH
Confidence 444444444444444444444444443333 23322 2346789999999987 56886433322 11 1111
Q ss_pred cCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHh
Q 018091 129 YNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMR 194 (361)
Q Consensus 129 ~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~ 194 (361)
.|.+ ..+..+..+.++. ++-+ +...+..+||-.+.+.++..+|..++..
T Consensus 317 sGar----------T~lsgi~~a~~ll-----l~l~--~~~~~~~~IP~a~Laavli~v~~~l~~~ 365 (554)
T COG0659 317 SGAR----------TRLSGIIHAALLL-----LLLL--FLAPLVSYIPLAALAAVLILVGWGLLDW 365 (554)
T ss_pred hCCc----------ChHHHHHHHHHHH-----HHHH--HHHHHHHhCcHHHHHHHHHHHHHHhccH
Confidence 2211 1233333333222 2222 2367788999999999999999988753
No 50
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=22.20 E-value=2.3e+02 Score=25.92 Aligned_cols=49 Identities=10% Similarity=0.325 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhhhhhhccccCc-------cchHHHHHHHHHHHHHhhhc
Q 018091 146 RTIQGSLIVSSFI-NIVLGYSGAWGNLARFFSP-------IVIVPFVCVVGLGLFMRGFP 197 (361)
Q Consensus 146 ~~~~Ga~ivsGli-~~llg~~gl~~~l~~~~Pp-------~ViG~~v~lIGl~l~~~~~~ 197 (361)
-.+..++++..++ +.++-. -+++.|++.. -+.|..++.+|++.+-.|++
T Consensus 141 ~~~~~~i~~~~~~~~~~l~~---s~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~Gl~ 197 (203)
T COG2095 141 LAVVLAILLASLLTYLILLS---SSRIMRLLGKTGLNALTRIMGLLLAALGVQMILDGLR 197 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444 443332 3667777775 35677777777777666554
No 51
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.19 E-value=2.4e+02 Score=25.59 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=19.6
Q ss_pred hhhccccCcc-------chHHHHHHHHHHHHHhhhc
Q 018091 169 GNLARFFSPI-------VIVPFVCVVGLGLFMRGFP 197 (361)
Q Consensus 169 ~~l~~~~Pp~-------ViG~~v~lIGl~l~~~~~~ 197 (361)
+++.|++.+. +.|.+++.||++.+-.|++
T Consensus 157 ~~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi~ 192 (197)
T PRK10739 157 SLFLRLLGEKGVNALERLMGLILVMLSTQMFLDGIR 192 (197)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777763 4677777777776665553
No 52
>PRK11663 regulatory protein UhpC; Provisional
Probab=21.87 E-value=7.7e+02 Score=24.27 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred CccccccccceecCCCCC-hHHHHHHHHHHHHHHHhh-----HhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 018091 29 TPAEQLQQLQYCIHSNPP-WPQALLLAFQHYIVMLGT-----TVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQT 102 (361)
Q Consensus 29 ~~~~~~~~~~~~~~e~pp-~~~~i~~GlQh~l~m~~~-----~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~ 102 (361)
|...+.....+++|++.+ +++.+....--..++.+. ....|.+..+ .|+++.+...+.+...+..+++.++-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G 79 (434)
T PRK11663 1 PADAPLITDKHEIDARYRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSG 79 (434)
T ss_pred CCCCCCCCCHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred H----hCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcc
Q 018091 103 L----FGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPI 178 (361)
Q Consensus 103 ~----~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ 178 (361)
. +|.|..+..+.....+........ .++.......++.|+..-....... ..+.+++|+.
T Consensus 80 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~l~g~~~g~~~~~~~-~~~~~~~~~~ 143 (434)
T PRK11663 80 IVSDRSNARYFMGIGLIATGIINILFGFS---------------SSLWAFALLWVLNAFFQGWGWPVCA-KLLTAWYSRT 143 (434)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHccchHHH-HHHHHhCCHH
Q ss_pred chHHHHHHHHH
Q 018091 179 VIVPFVCVVGL 189 (361)
Q Consensus 179 ViG~~v~lIGl 189 (361)
--|........
T Consensus 144 ~rg~~~~~~~~ 154 (434)
T PRK11663 144 ERGGWWAIWNT 154 (434)
T ss_pred HHHHHHHHHHH
No 53
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.85 E-value=5.9e+02 Score=22.87 Aligned_cols=84 Identities=11% Similarity=0.154 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccCccchHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHhhh--h
Q 018091 146 RTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKR--L 223 (361)
Q Consensus 146 ~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~lIGl~l~~~~~~~~~~~~~i~l~~l~v~i~l~~~~k~--~ 223 (361)
-..-++.++.|++.++.|++.+++.=.+--. | ++.++- ++++.-+++....++.++ -
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~----g-i~tli~----------------~~i~~G~~~~~~~~~i~~~~~ 139 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSPKNSNQY----G-IITLIL----------------VSIVGGLVFYFIFKYIYPYKK 139 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc----c-HHHHHH----------------HHHHHHHHHHHHHHHHhcccc
Confidence 3455677778888888887665443111111 2 222221 111111222233344443 3
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHHHH
Q 018091 224 HPKAHFIVERFALLFCIGVVWAFAAIL 250 (361)
Q Consensus 224 ~~~~~~~~~~~aiLigivvG~~~a~~~ 250 (361)
.+.+..++|...+.++..+.|.+.+..
T Consensus 140 ~~~r~~~~k~~~~~~~~~~~w~~~~~~ 166 (206)
T PF06570_consen 140 KKKRPSWWKYILISVLAMVLWIVIFVL 166 (206)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778787777777777654443
No 54
>PRK10720 uracil transporter; Provisional
Probab=21.78 E-value=5.2e+02 Score=26.20 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCccchHHHHH
Q 018091 153 IVSSFINIVLGYSGAWGNLARFFSPIVIVPFVC 185 (361)
Q Consensus 153 ivsGli~~llg~~gl~~~l~~~~Pp~ViG~~v~ 185 (361)
.+++++.+++++++-+..+...+|..|.|.+.+
T Consensus 306 ~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i 338 (428)
T PRK10720 306 GGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL 338 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 568888999998877788999999999877554
No 55
>PRK15087 hemolysin; Provisional
Probab=20.92 E-value=5.6e+02 Score=23.40 Aligned_cols=62 Identities=18% Similarity=0.113 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHH-HHHHHHHHHHHHHHHHhCCCcc
Q 018091 47 WPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVI-QSLLFMSGLNTLLQTLFGTRLP 109 (361)
Q Consensus 47 ~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i-~a~~~~~Gi~tllq~~~G~rlP 109 (361)
..+|..-+.+|.+..+...+....++..+...+ .+....+ ...+..+-+.++..+...|.++
T Consensus 13 ~~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~-~~~~~~~~~~vy~~s~~~l~~~StlYH~~~ 75 (219)
T PRK15087 13 LAEEIANSISHGIGLVFGIVGLVLLLVQAVDAN-ADATAITSYSLYGGSMILLFLASTLYHAIP 75 (219)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 347889999999888776666666665542111 1112222 3344445555555565556665
No 56
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=20.56 E-value=4.6e+02 Score=24.49 Aligned_cols=43 Identities=9% Similarity=-0.013 Sum_probs=22.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHH
Q 018091 202 CVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAIL 250 (361)
Q Consensus 202 ~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~ 250 (361)
++.++-.++.+.+=+.+..+.+. +. ..++++++.+|.+++...
T Consensus 68 ~~lLgPAtVALAvPLY~q~~~lk----~~--~~~Il~~~~vG~~~~i~s 110 (232)
T PRK04288 68 SFFLEPATIAFAIPLYKKRDVLK----KY--WWQILGGIVVGSVCSVLI 110 (232)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH----HH--HHHHHHHHHHHHHHHHHH
Confidence 34455555555554444433331 11 236777777777666544
No 57
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.38 E-value=3.6e+02 Score=24.53 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccC-------ccchHHHHHHHHH
Q 018091 146 RTIQGSLIVSSFINIVLGYSGAWGNLARFFS-------PIVIVPFVCVVGL 189 (361)
Q Consensus 146 ~~~~Ga~ivsGli~~llg~~gl~~~l~~~~P-------p~ViG~~v~lIGl 189 (361)
..+...+++.|.+++++|..|++ |+-+++. +-..|..++++|.
T Consensus 6 eiI~~vLLliG~~f~ligaIGLl-RfPD~YtRLHAATKa~TLGv~LILlgv 55 (197)
T PRK12585 6 EIIISIMILIGGLLSILAAIGVI-RLPDVYTRTHAAGISNTFGVSLLLFAT 55 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHhhccccchhhhHHHHHHHH
Confidence 34555678888888888887763 3333333 2344555555554
No 58
>COG3817 Predicted membrane protein [Function unknown]
Probab=20.25 E-value=6.6e+02 Score=24.07 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=13.9
Q ss_pred cccCccchHHHHHHHHH
Q 018091 173 RFFSPIVIVPFVCVVGL 189 (361)
Q Consensus 173 ~~~Pp~ViG~~v~lIGl 189 (361)
++.|+.++|..+.++.+
T Consensus 50 ~~lp~~viG~ivillAl 66 (313)
T COG3817 50 DRLPNIVIGLIVILLAL 66 (313)
T ss_pred ccccchhHhHHHHHHHH
Confidence 68999999988777655
No 59
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=20.17 E-value=5.2e+02 Score=25.13 Aligned_cols=36 Identities=11% Similarity=0.251 Sum_probs=23.1
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 018091 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF 104 (361)
Q Consensus 68 vP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~ 104 (361)
.|..+.+ .|++.++...+.....+..-+++++...+
T Consensus 228 lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l 263 (393)
T PRK09705 228 LPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAM 263 (393)
T ss_pred HHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 68887776666655555566666666654
Done!