Query 018091
Match_columns 361
No_of_seqs 146 out of 1248
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 8.9E-48 3E-52 384.9 24.6 273 35-360 2-289 (429)
2 1pw4_A Glycerol-3-phosphate tr 32.6 2.9E+02 0.0099 25.2 14.6 39 65-103 272-310 (451)
3 3qe7_A Uracil permease; uracil 23.4 5E+02 0.017 24.9 11.8 75 87-183 263-337 (429)
4 1pw4_A Glycerol-3-phosphate tr 20.5 2.5E+02 0.0086 25.6 7.7 54 48-103 28-84 (451)
5 4aps_A DI-OR tripeptide H+ sym 18.4 5.7E+02 0.019 23.6 10.8 38 66-103 34-76 (491)
6 1bts_A BAND 3 anion transport 18.1 48 0.0017 19.2 1.2 24 334-357 3-26 (26)
7 3o7q_A L-fucose-proton symport 18.0 5.4E+02 0.018 23.2 11.9 61 43-103 256-317 (438)
8 3o7q_A L-fucose-proton symport 16.5 5.9E+02 0.02 22.9 12.1 98 68-179 49-150 (438)
9 1pd6_A Cardiac MYBP-C;, myosin 15.8 47 0.0016 24.7 1.0 14 7-20 5-18 (104)
10 2kxc_B ESPF-like protein; IRTK 12.8 87 0.003 20.8 1.5 17 3-19 23-39 (48)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=8.9e-48 Score=384.89 Aligned_cols=273 Identities=25% Similarity=0.399 Sum_probs=241.4
Q ss_pred cccceecCCCCChHHHHHHHHHHHHHHHhhHhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHh-CCCcceeec
Q 018091 35 QQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF-GTRLPTVMG 113 (361)
Q Consensus 35 ~~~~~~~~e~pp~~~~i~~GlQh~l~m~~~~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~~-G~rlPiv~g 113 (361)
.|+.|++|||+|+++++++|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|.++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 46789999999999999999999999999999999997 7886 58999999999999986 899999999
Q ss_pred cccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhh--hhh-hhhccccCccchHHHHHHHHHH
Q 018091 114 PSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS--GAW-GNLARFFSPIVIVPFVCVVGLG 190 (361)
Q Consensus 114 ps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~--gl~-~~l~~~~Pp~ViG~~v~lIGl~ 190 (361)
+||+|+.++.++.+ + ++++++|+++++|+++++++++ ++. +|++|+|||.|+|.++++||++
T Consensus 71 ~sfafi~~~~~i~~-~--------------g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~ 135 (429)
T 3qe7_A 71 SSFAFISPVLLLLP-L--------------GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 135 (429)
T ss_dssp ECGGGHHHHHHHGG-G--------------CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-c--------------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence 99999999987764 2 5899999999999999999987 554 6999999999999999999999
Q ss_pred HHHhhhcccc-----------cchhhHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 018091 191 LFMRGFPLLG-----------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV 259 (361)
Q Consensus 191 l~~~~~~~~~-----------~~~~i~l~~l~v~i~l~~~~k~~~~~~~~~~~~~aiLigivvG~~~a~~~g~~~~~~~~ 259 (361)
+++.++++.+ .++.+++++++++++++++.|++ +|++++|+|+++||++++.+|..
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~-------~~~~aiLigivvg~~~a~~~G~~------ 202 (429)
T 3qe7_A 136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGF-------LAIIPILIGVLVGYALSFAMGIV------ 202 (429)
T ss_dssp HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTT-------TTTHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhccc-------chhhHHHHHHHHHHHHHHHhcCC------
Confidence 9998876532 25778899999988888777654 66799999999999999999853
Q ss_pred cccccccccccccccCCCCCcccCCCCCCcCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCccCCchhH
Q 018091 260 PEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIG 339 (361)
Q Consensus 260 ~~~~~~~~~~d~~~~~~~a~~f~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~esig~~~av~~~~~~~~~~~~~~~r~~~ 339 (361)
|++. +.+++|+++|. |..|+||++.+..++++++++++|++|++.++++.+|++..++++.||++.
T Consensus 203 ----------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~ 268 (429)
T 3qe7_A 203 ----------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 268 (429)
T ss_dssp ----------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred ----------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence 5554 56679999994 577999999999999999999999999999999999865556788999999
Q ss_pred HhhHHHHHhhhcCCCCCCccC
Q 018091 340 LQGIGMLVEGIFGSVVGTTAS 360 (361)
Q Consensus 340 ~~Gl~s~laglfG~~~~tt~s 360 (361)
+||++|+++|+||++|.|+|+
T Consensus 269 adGla~i~~glfGg~p~Tt~~ 289 (429)
T 3qe7_A 269 ANGLSTVISGFFGSTPNTTYG 289 (429)
T ss_dssp HHHHHHHHHHHHTCCCEEECH
T ss_pred HHHHHHHHHHhcCCCCcchHH
Confidence 999999999999999999875
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=32.58 E-value=2.9e+02 Score=25.20 Aligned_cols=39 Identities=10% Similarity=-0.137 Sum_probs=25.7
Q ss_pred HhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 018091 65 TVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (361)
Q Consensus 65 ~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~ 103 (361)
....|..+.+..|+++.+...+.....++..++.++...
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667888877766666666666666666665
No 3
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=23.38 E-value=5e+02 Score=24.91 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHhhh
Q 018091 87 IQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSG 166 (361)
Q Consensus 87 i~a~~~~~Gi~tllq~~~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~Ga~ivsGli~~llg~~g 166 (361)
+...+.+-|++|++-+++| ..|.-. + .--...+..+ +.. + +. +...+|++.+++++++
T Consensus 263 ~~r~l~adGla~i~~glfG-g~p~Tt---~--~en~g~i~~t-g~~-----------s-r~---~~~~ag~~lillgl~p 320 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFG-STPNTT---Y--GENIGVMAIT-RVY-----------S-TW---VIGGAAIFAILLSCVG 320 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCEEE---C--HHHHHHHHHH-TBC-----------C-HH---HHHHHHHHHHHHTCCH
T ss_pred cchHHHHHHHHHHHHHhcC-CCCcch---H--HHhHHHHHhc-CCc-----------c-hH---HHHHHHHHHHHHHHHH
Confidence 4678899999999999987 466432 2 1111111111 110 1 12 3468888889999877
Q ss_pred hhhhhccccCccchHHH
Q 018091 167 AWGNLARFFSPIVIVPF 183 (361)
Q Consensus 167 l~~~l~~~~Pp~ViG~~ 183 (361)
.+..+...+|..|+|..
T Consensus 321 k~~al~~~IP~~vlgg~ 337 (429)
T 3qe7_A 321 KLAAAIQMIPLPVMGGV 337 (429)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHccHHHHHHH
Confidence 67889999999998764
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.47 E-value=2.5e+02 Score=25.63 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhh---HhHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 018091 48 PQALLLAFQHYIVMLGT---TVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (361)
Q Consensus 48 ~~~i~~GlQh~l~m~~~---~vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~ 103 (361)
+......+.+++..+.. ....|.+..+ . .++.+...+.+...+...++.++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~ 84 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGS 84 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444444444332 2334444443 5 88888888888888888888888875
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=18.39 E-value=5.7e+02 Score=23.63 Aligned_cols=38 Identities=8% Similarity=0.012 Sum_probs=29.4
Q ss_pred hHHHHHHHhh-----cCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 018091 66 VLISSTLVPL-----MGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (361)
Q Consensus 66 vvvP~il~~a-----~gl~~~~~~~~i~a~~~~~Gi~tllq~~ 103 (361)
...+..+.+. .|+++.+...+.+...+...+++++.+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 8999988888888888888888888875
No 6
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=18.12 E-value=48 Score=19.18 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=17.7
Q ss_pred CCchhHHhhHHHHHhhhcCCCCCC
Q 018091 334 LSRSIGLQGIGMLVEGIFGSVVGT 357 (361)
Q Consensus 334 ~~r~~~~~Gl~s~laglfG~~~~t 357 (361)
.++.+.+++++.++=++|++-|.+
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHhcccCC
Confidence 467789999999999999988753
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=18.01 E-value=5.4e+02 Score=23.20 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=34.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhhHhHHHHH-HHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 018091 43 SNPPWPQALLLAFQHYIVMLGTTVLISST-LVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (361)
Q Consensus 43 e~pp~~~~i~~GlQh~l~m~~~~vvvP~i-l~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~ 103 (361)
+++.+...++..+-............|.. +.+..|++..+...+.....++..++.++-..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333333344666 66666999877777666666666677776665
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=16.47 E-value=5.9e+02 Score=22.93 Aligned_cols=98 Identities=7% Similarity=-0.125 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH----hCCCcceeeccccchHHHHHHHHhhcCCCCCCCcchhhhc
Q 018091 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRH 143 (361)
Q Consensus 68 vP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~----~G~rlPiv~gps~a~~~~~~~i~~~~g~~~~~~~~~~~~~ 143 (361)
.|. +.+..|+++.+...+.+...+...++.++.+. +|.|..++.+.....+........... .
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------------~ 115 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI------------M 115 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT------------T
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc------------c
Confidence 444 34458999998888888888888888888875 465555444333211111111000110 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccc
Q 018091 144 TIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIV 179 (361)
Q Consensus 144 ~~~~~~Ga~ivsGli~~llg~~gl~~~l~~~~Pp~V 179 (361)
++.....+.++.|+..-..-.. ....+.+++|+.-
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~~ 150 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPESS 150 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCSTT
T ss_pred cHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCchh
Confidence 3455555566666554433322 2356677778644
No 9
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=15.83 E-value=47 Score=24.70 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCCCC
Q 018091 7 HHPPPPPQAAPPSL 20 (361)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (361)
||+||+|+..+|..
T Consensus 5 ~~~~~~~~~~~p~f 18 (104)
T 1pd6_A 5 HHHSSMDEKKSTAF 18 (104)
T ss_dssp ------CCSTTSSC
T ss_pred cccCCCCccCCCEE
Confidence 55666677777765
No 10
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=12.77 E-value=87 Score=20.79 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 018091 3 ETAGHHPPPPPQAAPPS 19 (361)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (361)
|+++|.|+-|-..+|++
T Consensus 23 ~~s~~~p~rPa~P~Pt~ 39 (48)
T 2kxc_B 23 NMAEHIPPAPNWPAPTP 39 (48)
T ss_pred hhhccCCCCCCCCCCCC
Confidence 67788776555444443
Done!