Query 018091
Match_columns 361
No_of_seqs 146 out of 1248
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 09:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018091.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018091hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 15.4 1.6E+02 0.012 24.4 7.2 36 66-103 46-81 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 14.6 1.6E+02 0.012 23.6 6.8 45 68-112 30-78 (417)
3 d2eiaa2 a.73.1.1 (A:17-147) EI 7.0 44 0.0032 25.2 -0.1 39 24-64 92-130 (131)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 7.0 2E+02 0.015 15.4 4.3 14 234-247 12-25 (32)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 6.8 5.7E+02 0.041 20.5 17.2 36 68-103 272-307 (447)
6 d1oyia_ a.4.5.19 (A:) dsRNA-bi 4.0 1.1E+02 0.0078 19.0 0.3 15 34-48 44-59 (62)
7 d1uk5a_ a.7.7.1 (A:) BAG-famil 3.9 2.4E+02 0.017 20.1 2.3 24 6-29 4-27 (111)
8 d2pxrc1 a.73.1.1 (C:1-145) HIV 3.4 3.7E+02 0.027 20.1 3.1 15 47-61 130-144 (145)
9 d1zeea1 a.266.1.2 (A:6-392) Hy 3.3 7.7E+02 0.056 21.1 5.6 48 310-357 72-119 (387)
10 d1l1ca_ b.35.2.1 (A:) LicT {Ba 2.7 3.7E+02 0.027 16.5 2.1 26 19-44 28-53 (55)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.40 E-value=1.6e+02 Score=24.44 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.7
Q ss_pred hHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 018091 66 VLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (361)
Q Consensus 66 vvvP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~ 103 (361)
++.|.+ .+ .|+++.|...+.+...+..++++++-+.
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~ 81 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGS 81 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445644 33 6999999999999988989999998886
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=14.62 E-value=1.6e+02 Score=23.61 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH----hCCCcceee
Q 018091 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL----FGTRLPTVM 112 (361)
Q Consensus 68 vP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~----~G~rlPiv~ 112 (361)
.|..+.+..|+++.|...+.+...+...++..+.+. +|.|..++.
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~ 78 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 344466668999999988888888888888888875 577765543
No 3
>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=7.02 E-value=44 Score=25.22 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=23.0
Q ss_pred CCCCCCccccccccceecCCCCChHHHHHHHHHHHHHHHhh
Q 018091 24 RGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGT 64 (361)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~e~pp~~~~i~~GlQh~l~m~~~ 64 (361)
+|-+.+..|+ ....|. .-+--.++.+++|||+..-|+.+
T Consensus 92 aGttst~~eq-~~~~~~-~vg~iyrrWiIlgL~k~vkmy~~ 130 (131)
T d2eiaa2 92 RGLGVPRERQ-MEPAFD-QFRQTYRQWIIEAMSEGIKVMIG 130 (131)
T ss_dssp TTTTSCHHHH-SSTTSH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHH-hccccc-hHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445555554 333332 01112679999999999888753
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.96 E-value=2e+02 Score=15.37 Aligned_cols=14 Identities=50% Similarity=0.615 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 018091 234 FALLFCIGVVWAFA 247 (361)
Q Consensus 234 ~aiLigivvG~~~a 247 (361)
.++..||.+|.+.+
T Consensus 12 ialffgiavgiifa 25 (32)
T d2e74e1 12 IALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheee
Confidence 46667777776654
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=5.7e+02 Score=20.48 Aligned_cols=36 Identities=11% Similarity=-0.104 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 018091 68 ISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL 103 (361)
Q Consensus 68 vP~il~~a~gl~~~~~~~~i~a~~~~~Gi~tllq~~ 103 (361)
.|..+.+..+.+..+.........+...+++++..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhh
Confidence 456666667888877777777777777777777765
No 6
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=4.04 E-value=1.1e+02 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.642 Sum_probs=11.5
Q ss_pred ccccceecCCCCC-hH
Q 018091 34 LQQLQYCIHSNPP-WP 48 (361)
Q Consensus 34 ~~~~~~~~~e~pp-~~ 48 (361)
...++|.-||.|| |.
T Consensus 44 rsamvy~s~d~pprw~ 59 (62)
T d1oyia_ 44 RSAMVYSSDDIPPRWF 59 (62)
T ss_dssp HHTSSEECSSSSCEEE
T ss_pred HhhheecCCCCCCccc
Confidence 3557899999998 64
No 7
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.89 E-value=2.4e+02 Score=20.15 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 018091 6 GHHPPPPPQAAPPSLGLSRGPIWT 29 (361)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (361)
+..+.|+.+.+|++-+...+|..|
T Consensus 4 ~s~~~p~~~~~p~~~~~~~p~~~P 27 (111)
T d1uk5a_ 4 GSSGAPAEPAAPKSGEAETPPKHP 27 (111)
T ss_dssp CCCCCCCCCCCCCCCSSSSCCCCH
T ss_pred CCCCCCCCCCCCCCcCcCCCCCCc
Confidence 444556666666666655443333
No 8
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=3.43 E-value=3.7e+02 Score=20.08 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHH
Q 018091 47 WPQALLLAFQHYIVM 61 (361)
Q Consensus 47 ~~~~i~~GlQh~l~m 61 (361)
.++.+++|||-..=|
T Consensus 130 ykrWiilgl~k~Vkm 144 (145)
T d2pxrc1 130 YKRWIILGLNKIVRM 144 (145)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 568999999876544
No 9
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=3.27 E-value=7.7e+02 Score=21.10 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCccCCchhHHhhHHHHHhhhcCCCCCC
Q 018091 310 SAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGT 357 (361)
Q Consensus 310 ~~esig~~~av~~~~~~~~~~~~~~~r~~~~~Gl~s~laglfG~~~~t 357 (361)
...++|-+++..|..+-.++.++......-+++++-=+++-.|..|--
T Consensus 72 llgnvg~ym~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv~prf 119 (387)
T d1zeea1 72 LLGNVGLYMAACRRHEITEPTRETTSPLLEASALAMHIGASIGVTPRF 119 (387)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTSCSSC
T ss_pred HHhhhHHHHHHHHhccCCCccccccCchhhhHHHHHHHHHhcCCCchh
Confidence 456888999999988755566667788899999999999999888743
No 10
>d1l1ca_ b.35.2.1 (A:) LicT {Bacillus subtilis [TaxId: 1423]}
Probab=2.75 E-value=3.7e+02 Score=16.48 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCccccccccceecCCC
Q 018091 19 SLGLSRGPIWTPAEQLQQLQYCIHSN 44 (361)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~e~ 44 (361)
-+|..+-+.....++..++.|.++|+
T Consensus 28 GIGF~kk~gd~id~~~ieKvf~l~~~ 53 (55)
T d1l1ca_ 28 GLAFQKKSGDDVDEARIEKVFTLDNK 53 (55)
T ss_dssp SSSTTCCTTSCCCGGGCSEEEEEECT
T ss_pred cceeCCCCCCccChHHceEEEEecCC
Confidence 35666666667777788889988875
Done!