BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018092
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ4|A Chain A, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
pdb|1XQ4|B Chain B, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
pdb|1XQ4|C Chain C, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
pdb|1XQ4|D Chain D, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
Length = 139
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAX 285
+ + + ++PE +DP ++Y+FAY++R I Q+ RHWII
Sbjct: 13 LTVSVTPRYVPEQSDPSQ--QQYVFAYTVR---------ITNTGSHPAQVISRHWIITDG 61
Query: 286 XXXXXXXXGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPF 345
G V+G PLL PG+ F Y S LP G+ RG++ V G PF
Sbjct: 62 EERVQEVRGLGVVGQQPLLAPGET-FEYTSGCPLPTPIGTXRGTYHCV-----GENGIPF 115
Query: 346 EVVVAEFPLQRP 357
EV +AEF L P
Sbjct: 116 EVPIAEFLLAXP 127
>pdb|1TZA|A Chain A, X-Ray Structure Of Northeast Structural Genomics
Consortium Target Sor45
pdb|1TZA|B Chain B, X-Ray Structure Of Northeast Structural Genomics
Consortium Target Sor45
Length = 134
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHW 280
A+ N +++ +I + + PE EKYLF+Y+I + L E + +L+ RHW
Sbjct: 3 ALDNSIRVEVKTEYIEQQSSPED--EKYLFSYTITIINLGE---------QAAKLETRHW 51
Query: 281 IIHAXXXXXXXXXGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADP 340
II G V+G P + P + Y S T L G G++ V
Sbjct: 52 IITDANGKTSEVQGAGVVGETPTIPP-NTAYQYTSGTVLDTPFGIXYGTYGXV-----SE 105
Query: 341 KGSPFEVVVAEFPLQRP 357
G F ++ F L P
Sbjct: 106 SGEHFNAIIKPFRLATP 122
>pdb|1XVS|A Chain A, Crystal Structure Of Apag Protein From Vibrio Cholerae
pdb|1XVS|B Chain B, Crystal Structure Of Apag Protein From Vibrio Cholerae
Length = 126
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAX 285
+KI+ +I E ++PE ++++FAY I I ++ + QL R W+I
Sbjct: 8 IKIQVQTRYIEEQSNPEY--QRFVFAYLI---------TIKNLSSQTVQLXSRRWLITDA 56
Query: 286 XXXXXXXXGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPF 345
G+ V+G P + +E+ Y S T L G +G + + D +G F
Sbjct: 57 DGKQTVVEGDGVVGEQPRIK-ANDEYTYSSGTALDTPVGVXQGQYLXI-----DEQGESF 110
Query: 346 EVVVAEFPLQRP 357
V + F L P
Sbjct: 111 TVEIEPFRLAVP 122
>pdb|2F1E|A Chain A, Solution Structure Of Apag Protein
Length = 127
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 226 VKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAX 285
V++ S F+ + P D +Y FAYSIR I +L RHW I
Sbjct: 9 VEVEVSPRFLAHQSTP--DEGRYAFAYSIR---------IQNAGAVPARLVARHWQITDG 57
Query: 286 XXXXXXXXGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPF 345
GE V+G P L PG+ F Y S L G ++G + V AD G+ F
Sbjct: 58 NGRTEQVDGEGVVGEQPWLRPGEA-FHYTSGVLLETEQGQMQGHYDMV----AD-DGTEF 111
Query: 346 EVVVAEFPLQRP 357
+A F L P
Sbjct: 112 IAPIAAFVLSVP 123
>pdb|3HXL|A Chain A, Crystal Structure Of The Sheath Tail Protein (dsy3957)
From Desulfitobacterium Hafniense, Northeast Structural
Genomics Consortium Target Dhr18
Length = 446
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 256 MSLLPEGCVINGMTFSS-CQLQRRHWIIHAXXXXXXXXXGE--------AVIGMYPLLHP 306
+S L +G ++ T S L W+I + G AV + +
Sbjct: 133 VSTLVDGAELDKQTVSDIAGLAANDWVIFSGTGALTETAGAPLINGSDGAVTNQAYIDYL 192
Query: 307 GQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFP 353
E F + LP++ +++ +FT RL D +G +VV+ +P
Sbjct: 193 AAVEIFDFNTIALPSTDDALKATFTAFAKRLRDDEGKKIQVVLENYP 239
>pdb|1KD7|A Chain A, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|B Chain B, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|C Chain C, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|K Chain K, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|L Chain L, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
pdb|1KD7|M Chain M, Crystal Structure Of An Extracellular Domain Fragment Of
Human Baff
Length = 164
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 307 GQNEFFYQSCTNLPA---SPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF 361
G E Q C L A +P +GS+TFVP L+ +GS E + ++ Y F
Sbjct: 16 GPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFF 73
>pdb|1KXG|A Chain A, The 2.0 Ang Resolution Structure Of Blys, B Lymphocyte
Stimulator.
pdb|1KXG|B Chain B, The 2.0 Ang Resolution Structure Of Blys, B Lymphocyte
Stimulator.
pdb|1KXG|C Chain C, The 2.0 Ang Resolution Structure Of Blys, B Lymphocyte
Stimulator.
pdb|1KXG|D Chain D, The 2.0 Ang Resolution Structure Of Blys, B Lymphocyte
Stimulator.
pdb|1KXG|E Chain E, The 2.0 Ang Resolution Structure Of Blys, B Lymphocyte
Stimulator.
pdb|1KXG|F Chain F, The 2.0 Ang Resolution Structure Of Blys, B Lymphocyte
Stimulator
Length = 152
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 307 GQNEFFYQSCTNLPA---SPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF 361
G E Q C L A +P +GS+TFVP L+ +GS E + ++ Y F
Sbjct: 4 GPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFF 61
>pdb|1OSG|A Chain A, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|B Chain B, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|C Chain C, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|D Chain D, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|E Chain E, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|F Chain F, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|3V56|A Chain A, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|B Chain B, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|C Chain C, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|D Chain D, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|E Chain E, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|F Chain F, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide
Length = 208
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 307 GQNEFFYQSCTNLPA---SPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF 361
G E Q C L A +P +GS+TFVP L+ +GS E + ++ Y F
Sbjct: 60 GPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKETGYFF 117
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 66 QECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLS 100
Q DDFE GA IG Y FY V +IP S
Sbjct: 111 QGTDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKS 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,360,797
Number of Sequences: 62578
Number of extensions: 468294
Number of successful extensions: 897
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 11
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)