Query 018092
Match_columns 361
No_of_seqs 282 out of 805
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4408 Putative Mg2+ and Co2+ 100.0 4.3E-65 9.4E-70 482.4 11.3 285 1-359 75-375 (386)
2 PRK05461 apaG CO2+/MG2+ efflux 100.0 4E-47 8.7E-52 322.4 16.5 125 219-360 2-126 (127)
3 COG2967 ApaG Uncharacterized p 100.0 3.9E-47 8.5E-52 311.0 14.2 124 220-360 2-125 (126)
4 PF04379 DUF525: Protein of un 100.0 2.1E-35 4.5E-40 236.8 10.0 88 235-334 1-88 (90)
5 COG4282 SMI1 Protein involved 99.8 1E-19 2.2E-24 158.0 11.9 161 5-202 2-185 (191)
6 PF09346 SMI1_KNR4: SMI1 / KNR 98.5 8.8E-08 1.9E-12 79.4 3.8 34 35-68 1-34 (130)
7 smart00860 SMI1_KNR4 SMI1 / KN 97.9 6.5E-06 1.4E-10 66.6 2.5 35 35-69 1-35 (129)
8 PF14568 SUKH_6: SMI1-KNR4 cel 97.3 0.00081 1.8E-08 55.3 7.5 32 38-69 1-32 (120)
9 PF14567 SUKH_5: SMI1-KNR4 cel 96.7 0.0046 1E-07 53.2 6.2 35 34-68 20-54 (132)
10 KOG4408 Putative Mg2+ and Co2+ 91.3 0.026 5.7E-07 55.3 -2.3 23 339-361 362-384 (386)
11 PF11611 DUF4352: Domain of un 84.4 13 0.00027 30.4 9.9 101 220-352 6-116 (123)
12 PRK04968 SecY interacting prot 80.4 7.4 0.00016 35.4 7.3 24 37-60 56-79 (181)
13 PF07348 Syd: Syd protein (SUK 77.4 4.6 9.9E-05 36.5 5.1 23 38-60 56-78 (176)
14 PF14263 DUF4354: Domain of un 71.2 43 0.00093 28.6 9.1 86 219-333 20-107 (124)
15 PF06355 Aegerolysin: Aegeroly 47.2 56 0.0012 28.1 5.8 56 272-333 21-76 (131)
16 PF00379 Chitin_bind_4: Insect 45.4 40 0.00086 23.8 4.0 24 320-348 21-44 (52)
17 KOG0037 Ca2+-binding protein, 42.1 64 0.0014 30.2 5.7 51 7-59 113-164 (221)
18 PRK03643 altronate oxidoreduct 40.5 42 0.0009 35.0 4.8 47 6-52 182-234 (471)
19 PHA02688 ORF059 IMV protein VP 38.8 22 0.00048 35.0 2.3 28 8-35 249-277 (323)
20 PF13598 DUF4139: Domain of un 38.4 1.4E+02 0.0031 28.7 8.0 92 191-289 181-276 (317)
21 PRK12449 acyl carrier protein; 37.9 71 0.0015 24.2 4.7 46 11-56 4-61 (80)
22 PF13348 Y_phosphatase3C: Tyro 31.8 55 0.0012 24.1 3.1 32 7-47 35-66 (68)
23 CHL00124 acpP acyl carrier pro 30.8 1.1E+02 0.0024 23.2 4.8 45 12-56 5-61 (82)
24 PF14874 PapD-like: Flagellar- 30.4 2.6E+02 0.0057 21.8 10.1 74 249-349 21-97 (102)
25 COG0246 MtlD Mannitol-1-phosph 29.7 77 0.0017 33.2 4.6 48 6-53 185-236 (473)
26 PF11829 DUF3349: Protein of u 29.6 1.1E+02 0.0023 25.0 4.5 39 10-48 1-48 (96)
27 TIGR00517 acyl_carrier acyl ca 29.4 93 0.002 23.4 4.0 45 12-56 3-59 (77)
28 PF03213 Pox_P35: Poxvirus P35 28.0 41 0.00089 33.2 2.2 24 12-35 256-279 (325)
29 PF05597 Phasin: Poly(hydroxya 26.1 1.3E+02 0.0028 25.9 4.7 40 8-48 79-118 (132)
30 PRK05350 acyl carrier protein; 25.2 1.5E+02 0.0032 22.8 4.5 44 12-55 6-61 (82)
31 PF08060 NOSIC: NOSIC (NUC001) 24.1 73 0.0016 22.8 2.4 28 7-34 13-40 (53)
32 PF08828 DSX_dimer: Doublesex 23.9 69 0.0015 23.9 2.2 18 2-19 19-47 (62)
33 TIGR02231 conserved hypothetic 23.9 6.6E+02 0.014 26.2 10.5 83 191-280 380-467 (525)
34 PRK05828 acyl carrier protein; 23.4 1.5E+02 0.0033 23.2 4.3 45 12-56 5-61 (84)
35 PF10691 DUF2497: Protein of u 22.8 48 0.001 25.6 1.3 17 16-32 46-62 (73)
36 PF11181 YflT: Heat induced st 22.0 68 0.0015 25.9 2.1 38 11-48 56-94 (103)
37 PF13786 DUF4179: Domain of un 21.6 3.4E+02 0.0074 20.8 6.1 28 220-255 64-91 (94)
38 PF11010 DUF2848: Protein of u 20.9 2.7E+02 0.0058 25.7 5.9 33 36-69 10-42 (194)
39 TIGR02695 azurin azurin. Azuri 20.8 86 0.0019 26.8 2.5 46 253-308 28-89 (125)
No 1
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-65 Score=482.37 Aligned_cols=285 Identities=27% Similarity=0.471 Sum_probs=238.4
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHhhChhhhhhcCCCCCHHHHHHHHHHcCCCCChhhhhheeecCCccCCCCCccccccc
Q 018092 1 MYPWPLVKRVKRCWDR-LKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAM 79 (361)
Q Consensus 1 ~~~~~~~~~v~~~W~r-ie~wl~~~~p~~~~~L~~gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~ 79 (361)
||||.++.+|.-.|+. +++|...+.|+..++|+.||+|.|++++|+.+|++||.++|++||.+|||... .+
T Consensus 75 h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~y 146 (386)
T KOG4408|consen 75 HDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FY 146 (386)
T ss_pred eeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------eh
Confidence 6899999999999997 99999999999999999999999999999999999999999999999999997 68
Q ss_pred ccccceeeccceeeeeccChhhHHHHHHHHHHhcCCCCCCceEEEeeecCccceEEEEEecCCeeEEeeeccCCCCccee
Q 018092 80 GLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIP 159 (361)
Q Consensus 80 Gl~ggy~~y~~~~~~~LL~L~~i~~~tq~~rq~L~d~~~~~~i~~~as~~~~~k~f~ld~~~G~~yVg~~n~~~~geiip 159 (361)
|++|+|..|+|.+ .++..+..+.-- ++..+. + ++-|++|.+||. |.+|+|
T Consensus 147 qvLi~~~d~sH~~-------~ev~~e~~t~~~--nf~~r~-------------~--L~y~ipgld~v~------hedilp 196 (386)
T KOG4408|consen 147 QVLIDMRDCSHIR-------SEVQTEAVTFLG--NFDSRQ-------------G--LKYAIPGLDYVS------HEDILP 196 (386)
T ss_pred heeeecccCcccc-------chhhhhhhhhhc--Cccccc-------------c--hheecccceeEe------eccccc
Confidence 9999999999998 333333332211 111011 1 123556666664 666666
Q ss_pred cCCccccccCCC--------------CCCccchhHHHHHHH-HhccccccCcEEEEecCCcceeeccCCCCCceeeeeeC
Q 018092 160 CVPNALIALGHG--------------CNSDQQQDGMLLWLE-EHGRRLHNGIIRLRDEENLKFINLFPEEPPLCSIAVTN 224 (361)
Q Consensus 160 c~p~~~i~~~hd--------------~~~~~~~ds~~~Wle-~~~~~Le~G~~~v~~~~~~r~i~~fp~~~p~~~~~~T~ 224 (361)
|++.+..+..|+ .++|..+|+|++|+| ++ .|.+.+++ |+ .+||+
T Consensus 197 yts~e~~~g~heLf~~~pdl~r~~~~~~~f~~q~tl~~W~e~kn-----~gwl~~~d------Vh----------~etTe 255 (386)
T KOG4408|consen 197 YTSSEAVPGQHELFDQFPDLARDPAAIPPFVIQDTLTAWQESKN-----HGWLPIRD------VH----------RETTE 255 (386)
T ss_pred cccccccccchhhhhhhhhhhcCcccCCchhhhHHHHHHHhcCC-----CCCcChhh------CC----------hhhcC
Confidence 666666555554 466899999999999 44 44444442 22 25999
Q ss_pred CeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccCCceeE
Q 018092 225 GVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLL 304 (361)
Q Consensus 225 gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG~~P~l 304 (361)
||+|+|+++|+|+.|.+. ++.|||+|+||||| +...++|||.+|||+|++.+|.+++|+|+||||++|+|
T Consensus 256 nI~Vtvstfylge~s~~~--pp~YwwrY~IRien--------~l~e~svQLreRhWrI~slng~le~V~G~gVVGk~PiL 325 (386)
T KOG4408|consen 256 NIRVTVSTFYLGERSSVH--PPVYWWRYCIRIEN--------ALPEKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPIL 325 (386)
T ss_pred CeEEEEEEeeecccccCC--CCceEEEEEEEeec--------CCCCcceEEeEeeEEEEecccchhhccccceecccccc
Confidence 999999999999999996 69999999999998 34569999999999999999999999999999999999
Q ss_pred cCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCC
Q 018092 305 HPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDY 359 (361)
Q Consensus 305 ~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~ 359 (361)
.||+|+|||+||++|+|++|+|||.|.|. +++|..|+|+||+|+|++|++
T Consensus 326 s~g~paFqYsSc~sl~ttsGhMwGtF~fe-----r~~G~lfDvkip~F~~es~ef 375 (386)
T KOG4408|consen 326 SAGRPAFQYSSCVSLQTTSGHMWGTFRFE-----REDGSLFDVKIPPFSLESPEF 375 (386)
T ss_pred CCCCcceEEeeeeeeccCCccceeeEEEE-----ecCCccccccCCceEeecccc
Confidence 99999999999999999999999999888 688999999999999988765
No 2
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=100.00 E-value=4e-47 Score=322.37 Aligned_cols=125 Identities=37% Similarity=0.664 Sum_probs=118.5
Q ss_pred eeeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCccc
Q 018092 219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI 298 (361)
Q Consensus 219 ~~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVv 298 (361)
++++|+||+|+|+|.|+|++|+|.+ ++|+|+|+|||+| .+. .+|||++|||+|+|++|++++|+|+|||
T Consensus 2 ~~~~t~gI~V~V~~~y~~e~S~p~~--~~y~f~Y~ItI~N-------~~~--~~vQL~~R~W~I~d~~g~~~~V~G~GVV 70 (127)
T PRK05461 2 YSAVTYGIEVSVQPRYLEEQSDPEE--GRYVFAYTITIEN-------LGR--VPVQLLSRHWLITDANGRVQEVRGEGVV 70 (127)
T ss_pred cccccCCEEEEEEEEECcccCCCcC--CEEEEEEEEEEEE-------CCC--CCEEEEeeeEEEEECCCCEEEEECCcee
Confidence 3579999999999999999999974 9999999999999 444 8999999999999999999999999999
Q ss_pred CCceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCCC
Q 018092 299 GMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYI 360 (361)
Q Consensus 299 G~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~~ 360 (361)
|+||+|.||+ .|+|+|||.|+||.|+|+|+|+|+ +++|+.|+|.||+|+|.+|..|
T Consensus 71 G~qP~L~PGe-~F~Y~S~~~l~tp~G~M~G~y~~~-----~~~G~~F~v~Ip~F~L~~P~~l 126 (127)
T PRK05461 71 GEQPVLAPGE-SFEYTSGAVLETPSGTMQGHYQMV-----DEDGERFEVPIPPFRLAVPRTL 126 (127)
T ss_pred cCCceECCCC-CeEEeCCCCccCCCEEEEEEEEEE-----eCCCCEEEEEccCEEcCCCccC
Confidence 9999999999 999999999999999999999999 5899999999999999999754
No 3
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-47 Score=311.03 Aligned_cols=124 Identities=32% Similarity=0.661 Sum_probs=118.6
Q ss_pred eeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccC
Q 018092 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299 (361)
Q Consensus 220 ~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG 299 (361)
.+.|..|+|+|.+.|++++|+|++ ++|+|+|+|+|+| +|. .++||++|||.|||++|++++|+|+||||
T Consensus 2 ~~~~~~I~V~V~~~yleeQS~P~~--~RyvfaYtitI~N-------~g~--~~vqLlsR~W~ITd~~g~v~eV~G~GVVG 70 (126)
T COG2967 2 MASSPDIEVQVQPRYLEEQSSPEE--ERYVFAYTVTIRN-------LGE--VPVQLLSRYWLITDGNGRVTEVEGEGVVG 70 (126)
T ss_pred CcccCceEEEEeeEEccccCCccc--ceEEEEEEEEEec-------CCC--ccceeeeeEEEEecCCCcEEEEEcCceec
Confidence 467899999999999999999985 9999999999999 555 99999999999999999999999999999
Q ss_pred CceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCCC
Q 018092 300 MYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYI 360 (361)
Q Consensus 300 ~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~~ 360 (361)
+||+|.||+ +|+|+|+|+|+||+|.|+|+|.|+ +++|..|+|.||+|+|++|..+
T Consensus 71 eQP~l~PG~-~y~YtSg~~l~Tp~G~M~GhY~M~-----~e~G~~F~v~Ip~F~L~vP~~~ 125 (126)
T COG2967 71 EQPLLAPGE-EYQYTSGCPLDTPSGTMQGHYEMI-----DEDGETFDVAIPVFRLAVPGLL 125 (126)
T ss_pred cccccCCCC-ceEEcCCcCccCCcceEEEEEEEe-----cCCCcEEEeecCceEecCcccc
Confidence 999999999 999999999999999999999999 7899999999999999999865
No 4
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=100.00 E-value=2.1e-35 Score=236.75 Aligned_cols=88 Identities=43% Similarity=0.765 Sum_probs=76.4
Q ss_pred eccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccCCceeEcCCCcceEEe
Q 018092 235 IPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQ 314 (361)
Q Consensus 235 ~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG~~P~l~pg~~~f~Y~ 314 (361)
+|++|++.+ ++|+|+|+|||+| .+. .+|||++|||+|+|++|++++|+|+||||++|+|+||+ +|+|+
T Consensus 1 ~~e~S~p~~--~~y~f~Y~I~I~N-------~~~--~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe-~f~Y~ 68 (90)
T PF04379_consen 1 VPEQSDPSQ--NRYVFAYRIRIEN-------HSD--ESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGE-SFEYT 68 (90)
T ss_dssp -GGG-BGGG--TBEEEEEEEEEEE--------SS--S-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTE-EEEEE
T ss_pred CccccCCCC--CeEEEEEEEEEEE-------CCC--CCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCC-cEEEc
Confidence 589999984 8999999999999 344 79999999999999999999999999999999999999 99999
Q ss_pred ecccccCCCeeeeeEEEEee
Q 018092 315 SCTNLPASPGSVRGSFTFVP 334 (361)
Q Consensus 315 S~~~l~t~~G~M~G~f~~~~ 334 (361)
|+|+|+||.|+|+|+|+|++
T Consensus 69 S~~~l~t~~G~M~G~y~~~~ 88 (90)
T PF04379_consen 69 SGCPLSTPSGSMEGSYTMVD 88 (90)
T ss_dssp EEEEESSSEEEEEEEEEEEE
T ss_pred CCCCcCCCCEEEEEEEEEEE
Confidence 99999999999999999983
No 5
>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1e-19 Score=158.05 Aligned_cols=161 Identities=23% Similarity=0.338 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhChhhhhhcCCCCCHHHHHHHHHHcCCCCChhhhhheeecCCccCCCCCcccccccccccc
Q 018092 5 PLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGG 84 (361)
Q Consensus 5 ~~~~~v~~~W~rie~wl~~~~p~~~~~L~~gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~Gl~gg 84 (361)
|.+..+..+|+||+.|.++|.|++...|+||||.++|+.+|++||++||+|+|++|.+||||...+ ...|
T Consensus 2 ~~~se~slawrrId~W~aeh~pdl~~~l~pgat~~di~~aE~dlg~tlPpdvResl~iHDGq~dgs------~ptg---- 71 (191)
T COG4282 2 PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQPDGS------PPTG---- 71 (191)
T ss_pred CCCchHHHHHHHHHHHHHhcCcccccccCCCccHHHHHHHHHHhcCcCChHHHHHHHhhCCCcCCC------Cccc----
Confidence 456778899999999999999999999999999999999999999999999999999999999864 2233
Q ss_pred eeeccceeeeeccChhhHHHHHHHHHHhcCC-C---C------------------CCceEEEeeecCccceEEEEEecCC
Q 018092 85 YSFYGHLVNVYLIPLSHIIMETKEIRRHLDF-P---G------------------RDKYVVVAFSSTYSEKFFFLNCTNG 142 (361)
Q Consensus 85 y~~y~~~~~~~LL~L~~i~~~tq~~rq~L~d-~---~------------------~~~~i~~~as~~~~~k~f~ld~~~G 142 (361)
.||+|+++..+.+.|++++.- . + ...|||+.++. +++.+++|..+|
T Consensus 72 ----------~ll~le~~~~~~~aWrdlaq~~~T~~G~~s~~e~s~~sfppgvywhPaWIPL~~d~--~Gnhi~IDLaPg 139 (191)
T COG4282 72 ----------LLLRLEPLDLELIAWRDLAQRDGTYGGEVSPSEGSGRSFPPGVYWHPAWIPLFGDP--RGNHICIDLAPG 139 (191)
T ss_pred ----------chhhhHHHHHHHHHHHHHHHhcCCcCCcccccccccccCCCCccccCceeeecccC--CCCeEEEecCCC
Confidence 568889998888888887662 1 0 23377776655 457778888887
Q ss_pred eeEEeeeccCCCCcceecCCccccccCCCCCC-ccchhHHHHHHHHhccccccCcEEEEec
Q 018092 143 QLYVGTKNLLSDGEMIPCVPNALIALGHGCNS-DQQQDGMLLWLEEHGRRLHNGIIRLRDE 202 (361)
Q Consensus 143 ~~yVg~~n~~~~geiipc~p~~~i~~~hd~~~-~~~~ds~~~Wle~~~~~Le~G~~~v~~~ 202 (361)
.. | +-||||-. ..|.++ +..+.|..++|-..+..+++|+.-+.++
T Consensus 140 p~--g-----~ygQiI~F--------grD~dtk~vVa~swaefls~~And~e~g~wllddd 185 (191)
T COG4282 140 PT--G-----GYGQIIWF--------GRDEDTKPVVAQSWAEFLSRIANDVETGRWLLDDD 185 (191)
T ss_pred CC--C-----CcceEEEe--------ccccccCeehhccHHHHHHHHHhHHhhcceecccC
Confidence 71 2 34666644 444444 4788999999999999999999887766
No 6
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=98.50 E-value=8.8e-08 Score=79.35 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHcCCCCChhhhhheeecCCccC
Q 018092 35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQEC 68 (361)
Q Consensus 35 gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~ 68 (361)
|||+++|+++|+++|++||++||++|+.|++...
T Consensus 1 p~t~~~I~~~E~~lg~~LP~~yk~fl~~~~~~~~ 34 (130)
T PF09346_consen 1 PATEEEIQELEEKLGVRLPDDYKEFLKEHNNGGI 34 (130)
T ss_dssp ---HHHHHHHHHHHTS---HHHHHHHH-------
T ss_pred CCCHHHHHHHHHHhCCCCcHHHHHHHHhhccccc
Confidence 7999999999999999999999999998754444
No 7
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=97.90 E-value=6.5e-06 Score=66.59 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHcCCCCChhhhhheeecCCccCC
Q 018092 35 GASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69 (361)
Q Consensus 35 gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~ 69 (361)
|+|+++|+++|+.||++||++||++|+.+||....
T Consensus 1 ~~s~~~i~~~e~~lg~~LP~~y~~f~~~~~g~~~~ 35 (129)
T smart00860 1 PASEEEIAELEKKLGIKLPEDYKEFLLLHNGGELG 35 (129)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCEEeC
Confidence 68999999999999999999999999999998775
No 8
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=97.34 E-value=0.00081 Score=55.32 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCCChhhhhheeecCCccCC
Q 018092 38 EADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69 (361)
Q Consensus 38 e~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~ 69 (361)
|++|+++|+.||++||.+||.+++-+||-...
T Consensus 1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~gg~~~ 32 (120)
T PF14568_consen 1 EEEIEEAEKKLGVKLPEDYKEFLKEYNGGYFN 32 (120)
T ss_dssp -HHHHHHHHHHTS---HHHHHHHHHC-SEEET
T ss_pred ChHHHHHHHHhCCCCCHHHHHHHHHcCCEEEC
Confidence 68999999999999999999999999997643
No 9
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=96.66 E-value=0.0046 Score=53.22 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHcCCCCChhhhhheeecCCccC
Q 018092 34 KGASEADIQQLEKSLKVKLPVPTRILYRFCDGQEC 68 (361)
Q Consensus 34 ~gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~ 68 (361)
.++++++|.++|++||++||.+||++++...+-..
T Consensus 20 ~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~s~v~~ 54 (132)
T PF14567_consen 20 ELPDDEQIVEAEEQLGISLPEEYKEFLLEASDVIY 54 (132)
T ss_dssp ----HHHHHHHHHHHT----HHHHHHHHHHTT--B
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCeee
Confidence 36899999999999999999999999877655444
No 10
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=91.33 E-value=0.026 Score=55.28 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=12.2
Q ss_pred CCCCCeEEEEeccccCCCCCCCC
Q 018092 339 DPKGSPFEVVVAEFPLQRPDYIF 361 (361)
Q Consensus 339 ~~~g~~F~v~Ip~F~L~~P~~~~ 361 (361)
|.++.+|.+++++|.|+.|+++|
T Consensus 362 Dvkip~F~~es~ef~~e~P~~~~ 384 (386)
T KOG4408|consen 362 DVKIPPFSLESPEFRLETPRLAF 384 (386)
T ss_pred cccCCceEeeccccccCCCcccc
Confidence 34555555555555555555543
No 11
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=84.42 E-value=13 Score=30.38 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=55.1
Q ss_pred eeeeCCeEEEEEeE-Eecc---ccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeC
Q 018092 220 IAVTNGVKIRASAV-FIPE---LADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGE 295 (361)
Q Consensus 220 ~~~T~gI~V~v~~~-y~~~---~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~ 295 (361)
+..+.+++|+|..+ +... ...+. ....+..=.++|+| .+. ++..+..-++.+.|.+|..-+....
T Consensus 6 ~~~~~~~~vtV~~v~~~~~~~~~~~~~--~g~~fv~v~v~v~N-------~~~--~~~~~~~~~f~l~d~~g~~~~~~~~ 74 (123)
T PF11611_consen 6 TVSVGGIEVTVNSVEKTDGSNEYSKPK--EGNKFVVVDVTVKN-------NGD--EPLDFSPSDFKLYDSDGNKYDPDFS 74 (123)
T ss_dssp EEEETTEEEEEEEE-EEE-SS-BEES-----SEEEEEEEEEEE--------SS--S-EEEEGGGEEEE-TT--B--EEE-
T ss_pred EEEECCEEEEEEEEEeecCCccccccC--CCCEEEEEEEEEEE-------CCC--CcEEecccceEEEeCCCCEEccccc
Confidence 34678999999988 3322 11222 24566778899998 344 8888888899999988865442221
Q ss_pred c--cc--CCceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCC-eEEEEe-ccc
Q 018092 296 A--VI--GMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGS-PFEVVV-AEF 352 (361)
Q Consensus 296 G--Vv--G~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~-~F~v~I-p~F 352 (361)
. .. ...=.|.||+ +.+|...|.- +++. .+.+.+ |.+
T Consensus 75 ~~~~~~~~~~~~i~pG~----------------~~~g~l~F~v-----p~~~~~~~l~~~~~~ 116 (123)
T PF11611_consen 75 ASSNDNDLFSETIKPGE----------------SVTGKLVFEV-----PKDDKPYTLEYSPDI 116 (123)
T ss_dssp CCCTTTB--EEEE-TT-----------------EEEEEEEEEE-----STT-GG-EEEE-H--
T ss_pred chhccccccccEECCCC----------------EEEEEEEEEE-----CCCCccEEEEEecCc
Confidence 1 11 1122788888 8999998873 4443 366666 443
No 12
>PRK04968 SecY interacting protein Syd; Provisional
Probab=80.36 E-value=7.4 Score=35.36 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHcCCCCChhhhhhe
Q 018092 37 SEADIQQLEKSLKVKLPVPTRILY 60 (361)
Q Consensus 37 te~~i~~~E~~lg~~LP~~~r~~y 60 (361)
.+.+++.+|+.|+++|.++++++|
T Consensus 56 ~~~~f~~vE~aLei~lh~~I~~fy 79 (181)
T PRK04968 56 PEGNFNNVERALEITLHPDIHAFY 79 (181)
T ss_pred CcccHHHHHHhhcCeecHHHHHHH
Confidence 567899999999999999999999
No 13
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=77.43 E-value=4.6 Score=36.54 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCCChhhhhhe
Q 018092 38 EADIQQLEKSLKVKLPVPTRILY 60 (361)
Q Consensus 38 e~~i~~~E~~lg~~LP~~~r~~y 60 (361)
.+++..+|+.|+++|.++++++|
T Consensus 56 ~~~f~~vE~aLei~lh~~i~~fy 78 (176)
T PF07348_consen 56 AADFSNVERALEIQLHPDIHAFY 78 (176)
T ss_dssp -SS-HHHHHHCT----HHHHHHC
T ss_pred ccCHHHHHHHhCCcccHHHHHHH
Confidence 56789999999999999999999
No 14
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=71.21 E-value=43 Score=28.59 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=56.7
Q ss_pred eeeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCccc
Q 018092 219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI 298 (361)
Q Consensus 219 ~~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVv 298 (361)
...++++|.|-++..=.+.-|... ...|-=+|.|.+.| .+. +++.|-.=..+-.+.+|+. ....+|=
T Consensus 20 ~a~~~d~i~V~At~~~~Gs~sv~~--k~~ytktF~V~vaN-------~s~--~~idLsk~Cf~a~~~~gk~--f~ldTVd 86 (124)
T PF14263_consen 20 NASAPDNIAVYATEKSQGSVSVGG--KSFYTKTFDVTVAN-------LSD--KDIDLSKMCFKAYSPDGKE--FKLDTVD 86 (124)
T ss_dssp -----SSEEEEEEEEEEEEEEETT--EEEEEEEEEEEEEE--------SS--S-EE-TT-EEEEEETTS-E--EEEEEE-
T ss_pred hhccCCCeEEEEEecCCccEeecC--ccceEEEEEEEEec-------CCC--CccccccchhhhccccCCE--EEecccc
Confidence 355778999999988888877655 37788899999999 334 8899999999999999954 3344443
Q ss_pred CCce--eEcCCCcceEEeecccccCCCeeeeeEEEEe
Q 018092 299 GMYP--LLHPGQNEFFYQSCTNLPASPGSVRGSFTFV 333 (361)
Q Consensus 299 G~~P--~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~ 333 (361)
.+.= .|.||+ +.+|.=-|.
T Consensus 87 ~~L~~g~lK~g~----------------s~kG~avFa 107 (124)
T PF14263_consen 87 EELTSGTLKPGE----------------SVKGIAVFA 107 (124)
T ss_dssp GGGG-SEE-TT-----------------EEEEEEEEE
T ss_pred hhhhhccccCCC----------------ceeEEEEEe
Confidence 3211 899999 888888777
No 15
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=47.15 E-value=56 Score=28.06 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=37.9
Q ss_pred cEEEeeeeEEEEeCCccEEeeeeCcccCCceeEcCCCcceEEeecccccCCCeeeeeEEEEe
Q 018092 272 SCQLQRRHWIIHANNVVVSVVSGEAVIGMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFV 333 (361)
Q Consensus 272 ~vqL~~R~W~I~~~~g~~~~V~G~GVvG~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~ 333 (361)
-.+|..-.|. ..+.+-.++.-+-|-+ -++.||+ .+...||=.-.+++|+ +|+|.+.
T Consensus 21 Na~L~~GKfy--~~~~kd~eis~~~v~~--~~i~~~~-~~~i~scGr~~~~sGT-EGsfdl~ 76 (131)
T PF06355_consen 21 NAQLSWGKFY--RDGNKDDEISPDDVNG--IVIPPGG-SYSICSCGREGSPSGT-EGSFDLY 76 (131)
T ss_pred ccEeccCccc--cCCCcCCEeCccccCc--eEecCCC-eEEEEEecCCCCCcCc-eEEEEEE
Confidence 3566666665 2222333444444433 3789998 8999999998888875 8999887
No 16
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=45.37 E-value=40 Score=23.75 Aligned_cols=24 Identities=38% Similarity=0.762 Sum_probs=20.0
Q ss_pred cCCCeeeeeEEEEeeCccCCCCCCeEEEE
Q 018092 320 PASPGSVRGSFTFVPGRLADPKGSPFEVV 348 (361)
Q Consensus 320 ~t~~G~M~G~f~~~~~~l~~~~g~~F~v~ 348 (361)
....|.++|+|.++ +++|....|.
T Consensus 21 ~~~~~~v~GsY~y~-----~pdG~~~~V~ 44 (52)
T PF00379_consen 21 EDEGGVVRGSYSYI-----DPDGQTRTVT 44 (52)
T ss_pred CCCCCEEEEEEEEE-----CCCCCEEEEE
Confidence 34688999999998 7999988775
No 17
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=42.07 E-value=64 Score=30.19 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhChhhhhhcCCCC-CHHHHHHHHHHcCCCCChhhhhh
Q 018092 7 VKRVKRCWDRLKNWLAENFPEAKATLRKGA-SEADIQQLEKSLKVKLPVPTRIL 59 (361)
Q Consensus 7 ~~~v~~~W~rie~wl~~~~p~~~~~L~~ga-te~~i~~~E~~lg~~LP~~~r~~ 59 (361)
.+.-+.+|..|.+|-.-. ...++=+.|- ...||..+-..+|+.||+.+-.+
T Consensus 113 f~EF~~Lw~~i~~Wr~vF--~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~ 164 (221)
T KOG0037|consen 113 FKEFKALWKYINQWRNVF--RTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNL 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHH
Confidence 467789999999997543 3455556664 78899999999999999998554
No 18
>PRK03643 altronate oxidoreductase; Provisional
Probab=40.48 E-value=42 Score=35.02 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=38.8
Q ss_pred hHHHHHHHH---HHHHHHHHhh--Chh-hhhhcCCCCCHHHHHHHHHHcCCCC
Q 018092 6 LVKRVKRCW---DRLKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVKL 52 (361)
Q Consensus 6 ~~~~v~~~W---~rie~wl~~~--~p~-~~~~L~~gate~~i~~~E~~lg~~L 52 (361)
.|.+..+.| ..+.+|+++| ||. +.++.-|+.++++++++++.+|+.=
T Consensus 182 ~Vl~~a~~~~l~~~~~~Wi~~~v~FpnsmVDRIvP~~~~~~~~~~~~~~G~~D 234 (471)
T PRK03643 182 IVLRYAQEWNLPEAFIQWLEEANTFCSTLVDRIVTGYPRDEAAALEEELGYED 234 (471)
T ss_pred HHHHHHHhccCCHHHHHHHHhcCCCCCcceecCCCCCChHHHHHHHHHhCCCc
Confidence 355666778 8899999998 454 6678999999999999999999863
No 19
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=38.78 E-value=22 Score=35.00 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=22.4
Q ss_pred HHH-HHHHHHHHHHHHhhChhhhhhcCCC
Q 018092 8 KRV-KRCWDRLKNWLAENFPEAKATLRKG 35 (361)
Q Consensus 8 ~~v-~~~W~rie~wl~~~~p~~~~~L~~g 35 (361)
+.+ ...|.||.+|+++++|.....|--|
T Consensus 249 ~~~~~~lwsrl~~Wla~~~P~~~y~lttP 277 (323)
T PHA02688 249 KEMKNSLWSRLGTWLAKRYPGFYYFLTTP 277 (323)
T ss_pred hhhhhhHHHHHHHHHHhhCCchheeecch
Confidence 444 4589999999999999988766555
No 20
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=38.42 E-value=1.4e+02 Score=28.69 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=50.1
Q ss_pred ccccCcEEEEecCCcceeeccCCCCC----ceeeeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccC
Q 018092 191 RLHNGIIRLRDEENLKFINLFPEEPP----LCSIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVIN 266 (361)
Q Consensus 191 ~Le~G~~~v~~~~~~r~i~~fp~~~p----~~~~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~ 266 (361)
.|..|...|-.+..+=.-+.++..++ .|+-.+-.+|+|+-...--.+....-....++-+.|+|+|+|.
T Consensus 181 ~L~~G~~~v~~dg~~vG~~~l~~~~~ge~~~l~~G~d~~v~v~r~~~~~~~~~g~~~~~~~~~~~~~itv~N~------- 253 (317)
T PF13598_consen 181 PLLPGPVSVYRDGTFVGESRLPHTAPGEEFELSFGVDPDVRVERKLLKKEEERGFFGKSQRRTYEYTITVRNN------- 253 (317)
T ss_pred cccCCcEEEEECCEEEEeeecCCCCCCCEEEEEcccCCCEEEEEEecceecccccccccEEEEEEEEEEEECC-------
Confidence 45566666655543222233333333 3445566778887666554222222222468899999999993
Q ss_pred CCccccEEEeeeeEEEEeCCccE
Q 018092 267 GMTFSSCQLQRRHWIIHANNVVV 289 (361)
Q Consensus 267 ~~~~~~vqL~~R~W~I~~~~g~~ 289 (361)
......|++..|--+-.|.+-++
T Consensus 254 ~~~~v~v~v~d~iPvs~~~~I~V 276 (317)
T PF13598_consen 254 KDEPVTVTVEDQIPVSEDEDIKV 276 (317)
T ss_pred CCCCEEEEEEeCCCCCCCceEEE
Confidence 34346677666644444444434
No 21
>PRK12449 acyl carrier protein; Provisional
Probab=37.85 E-value=71 Score=24.21 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhChhhhhhcCCCCCH-HH-----------HHHHHHHcCCCCChhh
Q 018092 11 KRCWDRLKNWLAENFPEAKATLRKGASE-AD-----------IQQLEKSLKVKLPVPT 56 (361)
Q Consensus 11 ~~~W~rie~wl~~~~p~~~~~L~~gate-~~-----------i~~~E~~lg~~LP~~~ 56 (361)
..++++|.+-+++.++.....+.+-++= ++ +.++|.++|+.+|++-
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~ 61 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDED 61 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3568889998988887655566666655 23 3789999999999764
No 22
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=31.76 E-value=55 Score=24.09 Aligned_cols=32 Identities=28% Similarity=0.592 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhChhhhhhcCCCCCHHHHHHHHHH
Q 018092 7 VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKS 47 (361)
Q Consensus 7 ~~~v~~~W~rie~wl~~~~p~~~~~L~~gate~~i~~~E~~ 47 (361)
...|+.-|..+++||.+.+ |.|+++|+.+-+.
T Consensus 35 l~~i~~~yGs~e~Yl~~~l---------gl~~~~i~~Lr~~ 66 (68)
T PF13348_consen 35 LDAIDERYGSVENYLREEL---------GLSEEDIERLRER 66 (68)
T ss_dssp HHHHHHHHSSHHHHHHHT----------T--HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHcC---------CCCHHHHHHHHHH
Confidence 4556667777788888776 8899999888654
No 23
>CHL00124 acpP acyl carrier protein; Validated
Probab=30.78 E-value=1.1e+02 Score=23.18 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhChhhhhhcCCCCCHHH------------HHHHHHHcCCCCChhh
Q 018092 12 RCWDRLKNWLAENFPEAKATLRKGASEAD------------IQQLEKSLKVKLPVPT 56 (361)
Q Consensus 12 ~~W~rie~wl~~~~p~~~~~L~~gate~~------------i~~~E~~lg~~LP~~~ 56 (361)
.+++++++.+++.+-.-...+.+-.+=.+ +.++|+++|+.+|++-
T Consensus 5 ~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~ 61 (82)
T CHL00124 5 DIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDED 61 (82)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHH
Confidence 46788888888776322334554444333 4779999999999854
No 24
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=30.45 E-value=2.6e+02 Score=21.79 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=43.8
Q ss_pred EEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCC--ccEEeee-eCcccCCceeEcCCCcceEEeecccccCCCee
Q 018092 249 LFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANN--VVVSVVS-GEAVIGMYPLLHPGQNEFFYQSCTNLPASPGS 325 (361)
Q Consensus 249 ~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~--g~~~~V~-G~GVvG~~P~l~pg~~~f~Y~S~~~l~t~~G~ 325 (361)
.+...|+|.| .+. .+ .+|++...+ ...-.|. ..| .|.||+ +.+..=...-..+.|.
T Consensus 21 ~~~~~v~l~N-------~s~--~p-----~~f~v~~~~~~~~~~~v~~~~g------~l~PG~-~~~~~V~~~~~~~~g~ 79 (102)
T PF14874_consen 21 TYSRTVTLTN-------TSS--IP-----ARFRVRQPESLSSFFSVEPPSG------FLAPGE-SVELEVTFSPTKPLGD 79 (102)
T ss_pred EEEEEEEEEE-------CCC--CC-----EEEEEEeCCcCCCCEEEECCCC------EECCCC-EEEEEEEEEeCCCCce
Confidence 4567888998 333 33 344454432 2233333 222 599999 6665433333456889
Q ss_pred eeeEEEEeeCccCCCCCCeEEEEe
Q 018092 326 VRGSFTFVPGRLADPKGSPFEVVV 349 (361)
Q Consensus 326 M~G~f~~~~~~l~~~~g~~F~v~I 349 (361)
.++...+. .+|..|.+.|
T Consensus 80 ~~~~l~i~------~e~~~~~i~v 97 (102)
T PF14874_consen 80 YEGSLVIT------TEGGSFEIPV 97 (102)
T ss_pred EEEEEEEE------ECCeEEEEEE
Confidence 99988776 2456787766
No 25
>COG0246 MtlD Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]
Probab=29.66 E-value=77 Score=33.15 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=40.3
Q ss_pred hHHHHHHHHHH-HHHHHHhh--Chh-hhhhcCCCCCHHHHHHHHHHcCCCCC
Q 018092 6 LVKRVKRCWDR-LKNWLAEN--FPE-AKATLRKGASEADIQQLEKSLKVKLP 53 (361)
Q Consensus 6 ~~~~v~~~W~r-ie~wl~~~--~p~-~~~~L~~gate~~i~~~E~~lg~~LP 53 (361)
.|.+....|+. +-.|+.++ ||. +.++.-|+.|+++++.++..+|+.=|
T Consensus 185 ~Vl~~a~~~~~~~a~wi~~~v~FpnsmVDRIVP~~t~~~~~~i~~~~g~~D~ 236 (473)
T COG0246 185 AVLRFASEWDLALAAWIEENVGFPNSMVDRIVPATTDDERDEIEDALGVEDP 236 (473)
T ss_pred HHHHHHHhhhhHHHHHHHhcCCCCcccccccCCCCChHHHHHHHHHhcCCCc
Confidence 46677788855 88999997 675 67899999999999999999998655
No 26
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=29.56 E-value=1.1e+02 Score=25.05 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhChh---------hhhhcCCCCCHHHHHHHHHHc
Q 018092 10 VKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (361)
Q Consensus 10 v~~~W~rie~wl~~~~p~---------~~~~L~~gate~~i~~~E~~l 48 (361)
|..+..+|-.||+.-+|+ +.+-|+.=.|++||.++=++|
T Consensus 1 ~~~~l~~iv~WLRaGYP~GvP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 1 MPSFLASIVDWLRAGYPEGVPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp HHHHHHHHHHHHHHH-TT-B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 456789999999999995 334577777777777776654
No 27
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=29.41 E-value=93 Score=23.35 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhChhhhhhcCCCCCH-HH-----------HHHHHHHcCCCCChhh
Q 018092 12 RCWDRLKNWLAENFPEAKATLRKGASE-AD-----------IQQLEKSLKVKLPVPT 56 (361)
Q Consensus 12 ~~W~rie~wl~~~~p~~~~~L~~gate-~~-----------i~~~E~~lg~~LP~~~ 56 (361)
...++|++.+++.+..-...+.+-++- ++ +.++|+++|+.+|++-
T Consensus 3 ~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~ 59 (77)
T TIGR00517 3 EIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEE 59 (77)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456778888888653323344444442 22 3679999999999774
No 28
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=28.00 E-value=41 Score=33.17 Aligned_cols=24 Identities=42% Similarity=0.776 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhChhhhhhcCCC
Q 018092 12 RCWDRLKNWLAENFPEAKATLRKG 35 (361)
Q Consensus 12 ~~W~rie~wl~~~~p~~~~~L~~g 35 (361)
..|.||.+||++++|.....|--|
T Consensus 256 ~~wsrl~~Wla~~~P~~~y~lttP 279 (325)
T PF03213_consen 256 SIWSRLGKWLAKRFPGAYYFLTTP 279 (325)
T ss_pred hHHHHHHHHHHhhCCCchhhhhch
Confidence 589999999999999887766544
No 29
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.09 E-value=1.3e+02 Score=25.93 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhhcCCCCCHHHHHHHHHHc
Q 018092 8 KRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSL 48 (361)
Q Consensus 8 ~~v~~~W~rie~wl~~~~p~~~~~L~~gate~~i~~~E~~l 48 (361)
.++...|+++|+-+.+..-.....|.=| |..||+++++.+
T Consensus 79 ~~~~~~~dklE~~fd~rV~~aL~rLgvP-s~~dv~~L~~rI 118 (132)
T PF05597_consen 79 ERATGQWDKLEQAFDERVARALNRLGVP-SRKDVEALSARI 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 5677899999999999888888888877 688999988876
No 30
>PRK05350 acyl carrier protein; Provisional
Probab=25.19 E-value=1.5e+02 Score=22.75 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhChhhhhhcCCCCC-HHH-----------HHHHHHHcCCCCChh
Q 018092 12 RCWDRLKNWLAENFPEAKATLRKGAS-EAD-----------IQQLEKSLKVKLPVP 55 (361)
Q Consensus 12 ~~W~rie~wl~~~~p~~~~~L~~gat-e~~-----------i~~~E~~lg~~LP~~ 55 (361)
.+.++|...+++.+..-...+.+-++ .++ +.++|.++|+.+|++
T Consensus 6 ~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~ 61 (82)
T PRK05350 6 EILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPE 61 (82)
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHH
Confidence 45677777777775322345555554 233 378999999999975
No 31
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=24.13 E-value=73 Score=22.77 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhChhhhhhcCC
Q 018092 7 VKRVKRCWDRLKNWLAENFPEAKATLRK 34 (361)
Q Consensus 7 ~~~v~~~W~rie~wl~~~~p~~~~~L~~ 34 (361)
-+.+...=.+++.|-..||||+..-+..
T Consensus 13 d~ei~~~~~~lre~Y~~~FPEL~~lv~~ 40 (53)
T PF08060_consen 13 DKEINLLHMRLREWYSWHFPELESLVPN 40 (53)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTHHHHS-S
T ss_pred HHHHHHHHHHHHHHHHccchhHHHHcCC
Confidence 3566777889999999999998865543
No 32
>PF08828 DSX_dimer: Doublesex dimerisation domain; InterPro: IPR014932 Doublesex (DSX) is a transcription factor that regulates somatic sexual differences in Drosophila. The structure has revealed a novel dimeric arrangement of ubiquitin-associated folds that has not previously been identified in a transcription factor []. ; PDB: 1ZV1_B 2JZ0_A 2JZ1_B.
Probab=23.89 E-value=69 Score=23.90 Aligned_cols=18 Identities=28% Similarity=0.803 Sum_probs=10.5
Q ss_pred CCChhHH-----------HHHHHHHHHHH
Q 018092 2 YPWPLVK-----------RVKRCWDRLKN 19 (361)
Q Consensus 2 ~~~~~~~-----------~v~~~W~rie~ 19 (361)
|||.+.+ .+..||+||+.
T Consensus 19 YpWEmmpLmyVILK~A~~D~eeA~rrI~E 47 (62)
T PF08828_consen 19 YPWEMMPLMYVILKYADADVEEASRRIDE 47 (62)
T ss_dssp --GGGHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888876 45567777764
No 33
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.88 E-value=6.6e+02 Score=26.22 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=45.0
Q ss_pred ccccCcEEEEecCCcceeeccCCCCC----ceeeeeeCCeEEEEEeEEeccccC-CCCCCCeeEEEEEEEEEeCCCcccc
Q 018092 191 RLHNGIIRLRDEENLKFINLFPEEPP----LCSIAVTNGVKIRASAVFIPELAD-PESDTEKYLFAYSIRMSLLPEGCVI 265 (361)
Q Consensus 191 ~Le~G~~~v~~~~~~r~i~~fp~~~p----~~~~~~T~gI~V~v~~~y~~~~s~-~~~~~~~y~f~Y~Iri~n~~~~~~~ 265 (361)
.|-.|...|-.+..+=.-+.++.-+| .++-.+-.+|+|+-...---+... .-.......|.|+|+|+|.
T Consensus 380 ~Ll~G~~~v~~dg~fvG~~~l~~~~~ge~~~l~~G~D~~v~v~r~~~~~~~~~~G~~~~~~~~~~~~~i~v~N~------ 453 (525)
T TIGR02231 380 PLLPGEVNIFRGNGFVGRSHLENVAPGERFELSLGVDEGIRIERKVVKRQTDEGGLIGNTSRTEYAYRITLKNL------ 453 (525)
T ss_pred cccCCceEEEECCEeEEeeecCCCCCCCeEEEeccCCCceEEEEeeeeeccccCceecccEEEEEEEEEEEEcC------
Confidence 45556666655543333333443333 455556678888754432222111 1111346889999999994
Q ss_pred CCCccccEEEeeeeE
Q 018092 266 NGMTFSSCQLQRRHW 280 (361)
Q Consensus 266 ~~~~~~~vqL~~R~W 280 (361)
.....+|.+..|--
T Consensus 454 -~~~~v~v~v~d~~P 467 (525)
T TIGR02231 454 -RKEPERVQIEEQLP 467 (525)
T ss_pred -CCCceEEEEEeecc
Confidence 34346677766533
No 34
>PRK05828 acyl carrier protein; Validated
Probab=23.38 E-value=1.5e+02 Score=23.22 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHh-hChhhhhhcCCCCCHHH-----------HHHHHHHcCCCCChhh
Q 018092 12 RCWDRLKNWLAE-NFPEAKATLRKGASEAD-----------IQQLEKSLKVKLPVPT 56 (361)
Q Consensus 12 ~~W~rie~wl~~-~~p~~~~~L~~gate~~-----------i~~~E~~lg~~LP~~~ 56 (361)
.+.++|+..+++ .+..-.+...+.++=.+ +.++|..+|+++|++-
T Consensus 5 eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~ 61 (84)
T PRK05828 5 EILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEK 61 (84)
T ss_pred HHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHH
Confidence 467889999987 33322233333333222 3679999999999753
No 35
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=22.78 E-value=48 Score=25.62 Aligned_cols=17 Identities=47% Similarity=0.812 Sum_probs=13.7
Q ss_pred HHHHHHHhhChhhhhhc
Q 018092 16 RLKNWLAENFPEAKATL 32 (361)
Q Consensus 16 rie~wl~~~~p~~~~~L 32 (361)
-|+.||.+|.|.+...+
T Consensus 46 mLkeWLD~nLP~lVErl 62 (73)
T PF10691_consen 46 MLKEWLDENLPGLVERL 62 (73)
T ss_pred HHHHHHHhccHHHHHHH
Confidence 47899999999877543
No 36
>PF11181 YflT: Heat induced stress protein YflT
Probab=21.96 E-value=68 Score=25.91 Aligned_cols=38 Identities=29% Similarity=0.575 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhChhhhhhc-CCCCCHHHHHHHHHHc
Q 018092 11 KRCWDRLKNWLAENFPEAKATL-RKGASEADIQQLEKSL 48 (361)
Q Consensus 11 ~~~W~rie~wl~~~~p~~~~~L-~~gate~~i~~~E~~l 48 (361)
...|++|++++...-.++.+.| +=|.++++.+..|+++
T Consensus 56 ~~~~d~~~~~f~~~~d~~~~~l~~lGl~~~ea~~y~~~l 94 (103)
T PF11181_consen 56 ESFWDKIKNFFTSGGDELRSKLESLGLSEDEAERYEEEL 94 (103)
T ss_pred ccHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4689999999995555555544 4589999999988876
No 37
>PF13786 DUF4179: Domain of unknown function (DUF4179); PDB: 3FBQ_A.
Probab=21.65 E-value=3.4e+02 Score=20.84 Aligned_cols=28 Identities=14% Similarity=0.484 Sum_probs=21.6
Q ss_pred eeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEE
Q 018092 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIR 255 (361)
Q Consensus 220 ~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Ir 255 (361)
+.+-+||+|++.-++.-+ .+....|.|.
T Consensus 64 s~t~~GitvTi~~v~~D~--------~~l~i~~~v~ 91 (94)
T PF13786_consen 64 SVTDNGITVTINEVIADG--------NRLIISYTVK 91 (94)
T ss_dssp EEEETTEEEEEEEEEE-S--------SEEEEEEEEE
T ss_pred EEEECCEEEEEEEEEEEC--------CEEEEEEEEE
Confidence 567899999999998765 5667777765
No 38
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=20.95 E-value=2.7e+02 Score=25.69 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHcCCCCChhhhhheeecCCccCC
Q 018092 36 ASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQ 69 (361)
Q Consensus 36 ate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~ 69 (361)
|-+.-|+++++ ||++=|..+=.+||+-+.+.-.
T Consensus 10 av~~HI~EL~~-lGVp~Ps~vP~~Y~v~~~lltq 42 (194)
T PF11010_consen 10 AVEHHIEELAA-LGVPPPSSVPLFYRVAPYLLTQ 42 (194)
T ss_pred HHHHHHHHHHH-hCCCCCCCCCEEEEechhhCcc
Confidence 34667899985 9999999999999998776654
No 39
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=20.85 E-value=86 Score=26.81 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=29.9
Q ss_pred EEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEe--------------e-ee-CcccCCceeEcCCC
Q 018092 253 SIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSV--------------V-SG-EAVIGMYPLLHPGQ 308 (361)
Q Consensus 253 ~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~--------------V-~G-~GVvG~~P~l~pg~ 308 (361)
+|++.| .|. -+-.-+...|.|+... ..+. | .+ +-||...++|.|||
T Consensus 28 tv~l~h-------~G~--lpk~~MgHN~Vl~k~~-d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGe 89 (125)
T TIGR02695 28 TVNLKH-------TGK--LPKAVMGHNWVLAKSA-DMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGE 89 (125)
T ss_pred EEEEec-------CCc--CchhccCccEEEeccc-cHHHHHHHHHhcccccCccCCCCcceEEEccccCCCc
Confidence 667776 343 5556778889998642 2222 2 23 36788888999998
Done!