Query 018092
Match_columns 361
No_of_seqs 282 out of 805
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1e_A Protein APAG; APAG prot 100.0 3.8E-49 1.3E-53 333.8 15.2 125 219-360 2-126 (127)
2 1xvs_A Protein APAG; MCSG APC2 100.0 7.6E-49 2.6E-53 331.3 15.1 124 220-360 2-125 (126)
3 1tza_A APAG protein, SOR45; st 100.0 4.8E-48 1.6E-52 329.1 14.3 122 221-359 3-124 (134)
4 1xq4_A Protein APAG; all beta 100.0 5.1E-48 1.8E-52 330.6 14.3 124 220-360 7-130 (139)
5 3d5p_A Putative glucan synthes 98.6 2.7E-07 9.1E-12 79.0 10.1 116 31-189 10-127 (144)
6 2icg_A LIN2918 protein; hypoth 98.3 3.3E-06 1.1E-10 73.0 10.9 110 12-140 5-114 (160)
7 2pag_A Hypothetical protein; n 98.2 5.7E-06 1.9E-10 70.2 9.1 32 32-63 18-49 (135)
8 2prv_A Uncharacterized protein 98.1 1.6E-05 5.4E-10 68.4 10.7 116 30-189 18-138 (153)
9 3nrf_A APAG protein; structura 80.0 14 0.00049 29.4 9.3 96 221-350 2-99 (106)
10 3ffv_A Protein SYD; membrane, 75.6 5.7 0.0002 34.8 6.4 23 38-60 59-81 (181)
11 3cfu_A Uncharacterized lipopro 64.5 64 0.0022 27.2 11.2 99 220-351 7-126 (159)
12 3ol3_A Putative uncharacterize 44.0 24 0.00081 28.2 4.1 46 3-48 2-56 (107)
13 1nep_A EPV20, BNPC2, epididyma 23.4 1.4E+02 0.0047 23.9 5.6 37 300-343 79-117 (130)
14 1fad_A Protein (FADD protein); 21.5 1E+02 0.0035 23.3 4.2 56 7-64 10-66 (99)
15 1iby_A Nitrosocyanin; RED copp 20.9 2.3E+02 0.0078 21.4 6.3 11 221-231 18-28 (112)
No 1
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=100.00 E-value=3.8e-49 Score=333.79 Aligned_cols=125 Identities=32% Similarity=0.573 Sum_probs=112.0
Q ss_pred eeeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCccc
Q 018092 219 SIAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVI 298 (361)
Q Consensus 219 ~~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVv 298 (361)
++++|+||+|+|+|.|+|++|+|.+ ++|+|+|+|||+| .|. .+|||++|||+|+|++|++++|+|+|||
T Consensus 2 ~~~~t~~I~V~V~~~y~~e~S~p~~--~~y~faY~I~I~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVV 70 (127)
T 2f1e_A 2 QDDPRYRVEVEVSPRFLAHQSTPDE--GRYAFAYSIRIQN-------AGA--VPARLVARHWQITDGNGRTEQVDGEGVV 70 (127)
T ss_dssp ----CCCEEEEEEEEECSTTCBGGG--TBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEESSBT
T ss_pred ccceECCEEEEEEEEEchhhCCCcC--CEEEEEEEEEEEe-------CCC--CCEEEEeceEEEEeCCCCEEEEECCCee
Confidence 4689999999999999999999974 9999999999999 444 8999999999999999999999999999
Q ss_pred CCceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCCC
Q 018092 299 GMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYI 360 (361)
Q Consensus 299 G~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~~ 360 (361)
|+||+|.||+ +|+|+|||.|+||.|+|+|+|+|+ +++|+.|+|.||+|+|++|.+|
T Consensus 71 G~qP~L~PGe-~f~YtSg~~L~tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l 126 (127)
T 2f1e_A 71 GEQPWLRPGE-AFHYTSGVLLETEQGQMQGHYDMV-----ADDGTEFIAPIAAFVLSVPRTL 126 (127)
T ss_dssp TBCCEECTTC-EEEEEEEEEESSSCEEEEEEEEEE-----ETTCCEEEEEEEEEEEC-----
T ss_pred cCCCcCCCCC-ceEEeCCcCcCCCcEEEEEEEEEE-----ECCCCEEEEECCceEcCCCccc
Confidence 9999999999 999999999999999999999998 5789999999999999999875
No 2
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=100.00 E-value=7.6e-49 Score=331.26 Aligned_cols=124 Identities=28% Similarity=0.544 Sum_probs=117.6
Q ss_pred eeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccC
Q 018092 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299 (361)
Q Consensus 220 ~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG 299 (361)
.++|+||+|+|+|.|+|++|+|.+ ++|+|+|+|||+| .|. .+|||++|||+|+|++|++++|+|+||||
T Consensus 2 ~~~t~~I~V~V~~~y~~e~S~p~~--~~y~faY~I~I~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVVG 70 (126)
T 1xvs_A 2 DVSLPCIKIQVQTRYIEEQSNPEY--QRFVFAYLITIKN-------LSS--QTVQLMSRRWLITDADGKQTVVEGDGVVG 70 (126)
T ss_dssp BCSCCCEEEEEEEEECGGGCBGGG--TBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTCCEEEEEEESBTT
T ss_pred CcccCCEEEEEEEEEchhcCCCcC--CEEEEEEEEEEEE-------CCC--CCEEEEecEEEEEeCCCCEEEEECCceEc
Confidence 468999999999999999999974 9999999999999 444 89999999999999999999999999999
Q ss_pred CceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCCC
Q 018092 300 MYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYI 360 (361)
Q Consensus 300 ~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~~ 360 (361)
+||+|.||+ +|+|+|||.|+||.|+|+|+|+|+ +++|+.|+|.||+|+|.+|.+|
T Consensus 71 ~qP~L~PGe-~f~YtSg~~L~tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l 125 (126)
T 1xvs_A 71 EQPRIKAND-EYTYSSGTALDTPVGVMQGQYLMI-----DEQGESFTVEIEPFRLAVPHVL 125 (126)
T ss_dssp BCCEECTTC-EEEEEEEEEESSSEEEEEEEEEEE-----CTTSCEEEEEEEEEEEECCCC-
T ss_pred CCCcCCCCC-ceEEeCCcCcCCCcEEEEEEEEEE-----ECCCCEEEEECCceEcCCcccc
Confidence 999999999 999999999999999999999998 6889999999999999999876
No 3
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=100.00 E-value=4.8e-48 Score=329.14 Aligned_cols=122 Identities=32% Similarity=0.610 Sum_probs=116.5
Q ss_pred eeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccCC
Q 018092 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIGM 300 (361)
Q Consensus 221 ~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG~ 300 (361)
++|+||+|+|+|.|+|++|+|.+ ++|+|+|+|||+| .|. .+|||++|||+|+|++|++++|+|+||||+
T Consensus 3 ~~t~~I~V~V~~~y~~e~S~p~~--~~y~faY~ItI~N-------~~~--~~vQL~sRhW~Itd~~g~~~eV~G~GVVGe 71 (134)
T 1tza_A 3 ALDNSIRVEVKTEYIEQQSSPED--EKYLFSYTITIIN-------LGE--QAAKLETRHWIITDANGKTSEVQGAGVVGE 71 (134)
T ss_dssp CGGGTEEEEEEEEEEEECCBTTB--CCEEEEEEEEEEE-------CSS--SCEEEEEEEEEEEETTSCEEEEEEESBTTB
T ss_pred CccCCEEEEEEEEEchhhCCCCC--CEEEEEEEEEEEe-------CCC--CCEEEEecEEEEEeCCCCEEEEEcCceEcC
Confidence 57999999999999999999974 9999999999999 444 899999999999999999999999999999
Q ss_pred ceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCC
Q 018092 301 YPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDY 359 (361)
Q Consensus 301 ~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~ 359 (361)
||+|.||+ +|+|+|||.|+||.|+|+|+|+|+ +++|+.|+|.||+|+|.+|..
T Consensus 72 qP~L~PGe-~F~YtSg~~L~Tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~ 124 (134)
T 1tza_A 72 TPTIPPNT-AYQYTSGTVLDTPFGIMYGTYGMV-----SESGEHFNAIIKPFRLATPGL 124 (134)
T ss_dssp CCEECTTE-EEEEEEEEEESSSEEEEEEEEEEE-----ETTCCEEEEEEEEEEEECTTS
T ss_pred CCcCCCCC-ceEEcCCcCcCCCceEEEEEEEEE-----ECCCCEEEEECCCeEccCCCh
Confidence 99999999 999999999999999999999999 578999999999999999975
No 4
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=100.00 E-value=5.1e-48 Score=330.59 Aligned_cols=124 Identities=36% Similarity=0.695 Sum_probs=117.4
Q ss_pred eeeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeeeCcccC
Q 018092 220 IAVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSGEAVIG 299 (361)
Q Consensus 220 ~~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G~GVvG 299 (361)
..+|+||+|+|+|.|+|++|+|.+ ++|+|+|+|||+| .|. .+|||++|||+|+|++|++++|+|+||||
T Consensus 7 ~~tT~gI~V~V~~~y~~e~S~p~~--~~y~FaY~ItI~N-------~~~--~~vQL~sRhW~ItD~~G~~~eV~G~GVVG 75 (139)
T 1xq4_A 7 PVKPYDLTVSVTPRYVPEQSDPSQ--QQYVFAYTVRITN-------TGS--HPAQVISRHWIITDGEERVQEVRGLGVVG 75 (139)
T ss_dssp CCCSSCEEEEEEEEECGGGCBGGG--TBEEEEEEEEEEE-------CSS--SCEEEEEEEEEEECTTSCEEEEEEESSSS
T ss_pred ccccCCEEEEEEEEEchhhCCCCC--CEEEEEEEEEEEe-------CCC--CCEEEEecEEEEEeCCCCEEEEECCCeec
Confidence 458999999999999999999974 9999999999999 444 89999999999999999999999999999
Q ss_pred CceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEeccccCCCCCCC
Q 018092 300 MYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYI 360 (361)
Q Consensus 300 ~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip~F~L~~P~~~ 360 (361)
+||+|.||+ +|+|+|||.|+||.|+|+|+|+|+ +++|+.|+|.||+|+|++|..|
T Consensus 76 eqPvL~PGe-~F~YtSg~~L~Tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l 130 (139)
T 1xq4_A 76 QQPLLAPGE-TFEYTSGCPLPTPIGTMRGTYHCV-----GENGIPFEVPIAEFLLAMPRTL 130 (139)
T ss_dssp CCCEECTTC-EEEEEEEEEESSSEEEEEEEEEEE-----ETTSCEEEEEEEEEEEECTTC-
T ss_pred CCCcCCCCC-ceEEcCCcCcCCCceEEEEEEEEE-----eCCCCEEEEECCCeEcCCCChh
Confidence 999999999 999999999999999999999999 5789999999999999999875
No 5
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=98.57 E-value=2.7e-07 Score=78.96 Aligned_cols=116 Identities=18% Similarity=0.270 Sum_probs=76.8
Q ss_pred hcCCCCCHHHHHHHHHHcCCCCChhhhhheeecCCccCCCCCcccccccccccceeeccceeeeeccChhhHHHHHHHHH
Q 018092 31 TLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110 (361)
Q Consensus 31 ~L~~gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~Gl~ggy~~y~~~~~~~LL~L~~i~~~tq~~r 110 (361)
.+++|||+++|+++|+.||++||++||++++.+||..... |+ . -..+.++++++.....++
T Consensus 10 ~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~~NGg~~~~------------~~-~------~~~l~~~~~i~e~n~~~~ 70 (144)
T 3d5p_A 10 YKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKL------------GD-N------YIYIWAIEDVIAYNHDYG 70 (144)
T ss_dssp EECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHCSSEEEEE------------TT-E------EEEECCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcccC------------CC-c------eeEeeCHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999986541 11 0 034677888877666553
Q ss_pred H--hcCCCCCCceEEEeeecCccceEEEEEecCCeeEEeeeccCCCCcceecCCccccccCCCCCCccchhHHHHHHHHh
Q 018092 111 R--HLDFPGRDKYVVVAFSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLWLEEH 188 (361)
Q Consensus 111 q--~L~d~~~~~~i~~~as~~~~~k~f~ld~~~G~~yVg~~n~~~~geiipc~p~~~i~~~hd~~~~~~~ds~~~Wle~~ 188 (361)
. .++. .+++++..+. ..++++-.++.+|+- .||++- +.+ ....++||.+||++.
T Consensus 71 ~~~~~p~----~~i~i~~D~g---~~~~~d~~~~~V~~~-----d~~~~~---~~~---------~~~iA~sF~eFL~~~ 126 (144)
T 3d5p_A 71 IQKYLQK----EYWAFGMDGD---IGYILHLSDNSIYRV-----DLGDLD---ITS---------IKYIAPSFDDFLGKA 126 (144)
T ss_dssp HHHHSCT----TEEEEEEETT---EEEEEETTTCCEEEE-----ETTSCC---GGG---------CEEEESSHHHHHHHH
T ss_pred hhhhcCC----CEEEEEEcCC---eEEEECCCCCEEEEE-----ECCCCC---hhh---------heeHhhCHHHHHHHH
Confidence 2 2222 2777766542 455566545666542 132211 011 124789999999865
Q ss_pred c
Q 018092 189 G 189 (361)
Q Consensus 189 ~ 189 (361)
.
T Consensus 127 ~ 127 (144)
T 3d5p_A 127 I 127 (144)
T ss_dssp T
T ss_pred h
Confidence 4
No 6
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=98.33 E-value=3.3e-06 Score=73.03 Aligned_cols=110 Identities=8% Similarity=0.136 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhChhhhhhcCCCCCHHHHHHHHHHcCCCCChhhhhheeecCCccCCCCCcccccccccccceeeccce
Q 018092 12 RCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHL 91 (361)
Q Consensus 12 ~~W~rie~wl~~~~p~~~~~L~~gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~Gl~ggy~~y~~~ 91 (361)
...++|+..+.++-- ...+.+|+|+++|.++|+.||++||.+||.+++-+||-.... ..++| +++.
T Consensus 5 ~~~~~i~~~i~~~~~--~~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~gg~~~g--------~~i~~---i~~~- 70 (160)
T 2icg_A 5 SFLEEVDRLITLSGI--TFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNG--------VSFYG---ISKR- 70 (160)
T ss_dssp HHHHHHHHHHHHCCS--CCBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEETT--------EEECB---CCTT-
T ss_pred HHHHHHHHHHHHccc--ccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCcccCc--------eeeee---eccC-
Confidence 456777777765542 235668999999999999999999999999999999865431 11111 1110
Q ss_pred eeeeccChhhHHHHHHHHHHhcCCCCCCceEEEeeecCccceEEEEEec
Q 018092 92 VNVYLIPLSHIIMETKEIRRHLDFPGRDKYVVVAFSSTYSEKFFFLNCT 140 (361)
Q Consensus 92 ~~~~LL~L~~i~~~tq~~rq~L~d~~~~~~i~~~as~~~~~k~f~ld~~ 140 (361)
.....+...++..+..++..... ...+++++.+. .+.++++|..
T Consensus 71 -~~~~~~~~~i~~~~~~~~~~~~~--p~~~i~i~~~~--~G~~~~ld~~ 114 (160)
T 2icg_A 71 -GLSAASIPDVKFATEQARTFGDI--NKEMIMIKNSG--YGSIFSIDTS 114 (160)
T ss_dssp -GGGCCSTTBHHHHHHHHHHHTSS--CTTEEEEEECS--TTCEEEEEEE
T ss_pred -CcccCCCccchhhhHHHHHhcCC--CCCEEEEEecC--CCCEEEEEec
Confidence 01112334566666666654222 23367775443 3478888865
No 7
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=98.19 E-value=5.7e-06 Score=70.18 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=28.5
Q ss_pred cCCCCCHHHHHHHHHHcCCCCChhhhhheeec
Q 018092 32 LRKGASEADIQQLEKSLKVKLPVPTRILYRFC 63 (361)
Q Consensus 32 L~~gate~~i~~~E~~lg~~LP~~~r~~yr~h 63 (361)
...++|+++|.++|++||++||+|||++++-+
T Consensus 18 ~~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~ 49 (135)
T 2pag_A 18 PLELPDEDQLVEIEEQLFINIPFVFKEFLLTV 49 (135)
T ss_dssp CCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHC
Confidence 45566999999999999999999999998854
No 8
>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=98.12 E-value=1.6e-05 Score=68.40 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=73.1
Q ss_pred hhcCCCCCHHHHHHHHHHcCCCCChhhhhheeecCCccCCCCCcccccccccccceeeccceeeeeccChhhHHHHHHHH
Q 018092 30 ATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGAMGLIGGYSFYGHLVNVYLIPLSHIIMETKEI 109 (361)
Q Consensus 30 ~~L~~gate~~i~~~E~~lg~~LP~~~r~~yr~hnGq~~~~~~~~~~~~~Gl~ggy~~y~~~~~~~LL~L~~i~~~tq~~ 109 (361)
....+++|+++|.++|+.||++||.+||.+++-+||-... |..+|...... ..++..+..+
T Consensus 18 ~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ngg~~~--------------~~~i~~i~~~~-----~~i~~~~~~~ 78 (153)
T 2prv_A 18 AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLGYNFDH-----ASVVNRTNEY 78 (153)
T ss_dssp CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECCCCSSS-----CHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCceec--------------eEEEEeccCCC-----ccHHHHHHHH
Confidence 4567899999999999999999999999999999986653 11111111001 4566666667
Q ss_pred HHhcCCCCCCceEEEeeecCccceEEEEEec-----CCeeEEeeeccCCCCcceecCCccccccCCCCCCccchhHHHHH
Q 018092 110 RRHLDFPGRDKYVVVAFSSTYSEKFFFLNCT-----NGQLYVGTKNLLSDGEMIPCVPNALIALGHGCNSDQQQDGMLLW 184 (361)
Q Consensus 110 rq~L~d~~~~~~i~~~as~~~~~k~f~ld~~-----~G~~yVg~~n~~~~geiipc~p~~~i~~~hd~~~~~~~ds~~~W 184 (361)
+..... ...+|++ +.+ ++.++++|.. .+.+|+ .+ +.. .. ....++||.+|
T Consensus 79 ~~~~~~--p~~~i~i-~~~--g~~~~~ld~~~~~~~~~pv~~-wd----~~~------~~---------~~~iA~sF~ef 133 (153)
T 2prv_A 79 KEHYGL--TDGLVVI-EDV--DYFAYCLDTNKMKDGECPVVE-WD----RVI------GY---------QDTVADSFIEF 133 (153)
T ss_dssp HHHSCC--CTTEEEE-EEC--SSEEEEEETTSCBTTBCCEEE-EE----TTT------EE---------EEEEESSHHHH
T ss_pred HHhcCC--CCcEEEE-ecC--CCcEEEEeccccCCCCCCEEE-EE----ccC------Cc---------eEEEcCCHHHH
Confidence 664222 2236777 433 4578888864 234444 21 110 00 02478999999
Q ss_pred HHHhc
Q 018092 185 LEEHG 189 (361)
Q Consensus 185 le~~~ 189 (361)
|.+..
T Consensus 134 L~~~i 138 (153)
T 2prv_A 134 FYNKI 138 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97654
No 9
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=80.01 E-value=14 Score=29.38 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=67.8
Q ss_pred eeeCCeEEEEEeEEeccccCCCCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeCCccEEeeee--Cccc
Q 018092 221 AVTNGVKIRASAVFIPELADPESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHANNVVVSVVSG--EAVI 298 (361)
Q Consensus 221 ~~T~gI~V~v~~~y~~~~s~~~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~~g~~~~V~G--~GVv 298 (361)
+++++|.|-++..=.+.-|... ...|-=+|.|.+.|+ +.+.+-|..=..+-.+.+|+.-..++ +-..
T Consensus 2 ~~~d~v~V~At~k~~GS~s~~~--k~~ytktFdV~vaNl---------~~~~idLsk~C~~a~~~~gkef~ldTVde~L~ 70 (106)
T 3nrf_A 2 AAPDAVMVFARQGDKGSVSVGD--KHFRTQAFKVRLVNA---------AKSEISLKNSCLVAQSAAGQSFRLDTVDEELT 70 (106)
T ss_dssp ---CCCEEEEEEEEEEEEEETT--EEEEEEEEEEEEECC---------SSSCEECTTCEEEEEETTSCEEEEEEECGGGG
T ss_pred CCcCcEEEEeeccccccEEeCC--eeEEEEEEEEEEecC---------CCCccccchhhheeeCcCCCEEEecccchhhh
Confidence 4788999999988888888765 366777899999983 33889999999999999996544443 2222
Q ss_pred CCceeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCCeEEEEec
Q 018092 299 GMYPLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGSPFEVVVA 350 (361)
Q Consensus 299 G~~P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~~F~v~Ip 350 (361)
.=.|.||+ +.+|.=-|.. ++...+.+.+=
T Consensus 71 --~g~lk~g~----------------~vkG~avFaS-----~d~sVy~a~lV 99 (106)
T 3nrf_A 71 --ADTLKPGA----------------SVEGDAIFAS-----EDDAVYGASLV 99 (106)
T ss_dssp --CSEECTTC----------------EEEEEEEEEE-----SSSGGGGEEEE
T ss_pred --hccccCCC----------------ceeeEEEEee-----CChhheeeeEE
Confidence 22899999 8888888872 44455555443
No 10
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=75.58 E-value=5.7 Score=34.79 Aligned_cols=23 Identities=13% Similarity=0.470 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCCChhhhhhe
Q 018092 38 EADIQQLEKSLKVKLPVPTRILY 60 (361)
Q Consensus 38 e~~i~~~E~~lg~~LP~~~r~~y 60 (361)
..++..+|+.|+++|.++++++|
T Consensus 59 ~~~f~~vE~aLei~lh~~i~~fy 81 (181)
T 3ffv_A 59 EQNVNAVERAFDIVIQPTIHTFY 81 (181)
T ss_dssp CSSCHHHHHHSSCCCCHHHHHHT
T ss_pred cccHHHHHHHhcCcccHHHHHHH
Confidence 35789999999999999999998
No 11
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=64.51 E-value=64 Score=27.18 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=59.7
Q ss_pred eeeeCCeEEEEEeEEecccc-----------CC---CCCCCeeEEEEEEEEEeCCCccccCCCccccEEEeeeeEEEEeC
Q 018092 220 IAVTNGVKIRASAVFIPELA-----------DP---ESDTEKYLFAYSIRMSLLPEGCVINGMTFSSCQLQRRHWIIHAN 285 (361)
Q Consensus 220 ~~~T~gI~V~v~~~y~~~~s-----------~~---~~~~~~y~f~Y~Iri~n~~~~~~~~~~~~~~vqL~~R~W~I~~~ 285 (361)
+...++++|+|..+-..... .| . ...-+..-.|+|+| .|. ++...-.=.+.+.|+
T Consensus 7 tv~~~~~evTVnsv~~~~~~e~~~~~~~~~~~p~~~~--~G~~fviV~VTIeN-------~g~--e~~~~s~~~F~L~d~ 75 (159)
T 3cfu_A 7 TFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIK--DDEERLIIEVTMEN-------IGE--DSISYNFIGFDLRDK 75 (159)
T ss_dssp EEEETTEEEEEEEEEEECSSCBEESSCC------CBC--CCSEEEEEEEEEEE-------CSS--SCEEEEGGGEEEECT
T ss_pred eEEECCEEEEEEEEEEcCCCceeecccccccCccccC--CCCEEEEEEEEEEE-------CCC--CceeeCcccEEEEeC
Confidence 34557899998776543221 22 2 24456788999999 455 666666667888899
Q ss_pred CccEEeeeeCcccCC--c---eeEcCCCcceEEeecccccCCCeeeeeEEEEeeCccCCCCCC--eEEEEecc
Q 018092 286 NVVVSVVSGEAVIGM--Y---PLLHPGQNEFFYQSCTNLPASPGSVRGSFTFVPGRLADPKGS--PFEVVVAE 351 (361)
Q Consensus 286 ~g~~~~V~G~GVvG~--~---P~l~pg~~~f~Y~S~~~l~t~~G~M~G~f~~~~~~l~~~~g~--~F~v~Ip~ 351 (361)
+|+.-+-.. ...+. . =-|.||. +|+|...|.. |+|. .+.+..-+
T Consensus 76 dG~~~~~~~-~~~~~~~~l~~g~L~pG~----------------kvtG~ivFeV-----P~~~~k~~~L~y~p 126 (159)
T 3cfu_A 76 NDQSVRPVF-SIEEKGRILMGGTLVSGK----------------KVTGVLSYVI-----PKGEQKHYTLVYNP 126 (159)
T ss_dssp TCCBCCCEE-CSTTTTTBCCEEEECTTC----------------EEEEEEEEEE-----STTCGGGCEEEECH
T ss_pred CCCEEecee-eecccCCcccccccCCCC----------------EEEEEEEEEE-----CCCCCccEEEEEec
Confidence 996532221 11111 1 1455666 9999999983 5554 45555444
No 12
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=44.01 E-value=24 Score=28.21 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHHHHHHHhhChh---------hhhhcCCCCCHHHHHHHHHHc
Q 018092 3 PWPLVKRVKRCWDRLKNWLAENFPE---------AKATLRKGASEADIQQLEKSL 48 (361)
Q Consensus 3 ~~~~~~~v~~~W~rie~wl~~~~p~---------~~~~L~~gate~~i~~~E~~l 48 (361)
|-++.+.+-....+|-.||+.-+|+ +.+-|+.=.|++||.++=+.|
T Consensus 2 ~~~~~~~~p~~l~siv~WLRaGYPeGVP~~Dy~PLlALL~R~Ltddev~~Va~~L 56 (107)
T 3ol3_A 2 PGSMTETTTTFMDNVLGWLHKGYPEGVPPKDYFALLALLKRSLTEDEVVRAAQAI 56 (107)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCBCGGGHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CcchhccCcHHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 5567777888999999999999995 344567777777777665554
No 13
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=23.42 E-value=1.4e+02 Score=23.95 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=28.0
Q ss_pred CceeEcCCCcceEEeeccccc--CCCeeeeeEEEEeeCccCCCCCC
Q 018092 300 MYPLLHPGQNEFFYQSCTNLP--ASPGSVRGSFTFVPGRLADPKGS 343 (361)
Q Consensus 300 ~~P~l~pg~~~f~Y~S~~~l~--t~~G~M~G~f~~~~~~l~~~~g~ 343 (361)
.-| |.+|+ .|.|+-..+.. .|.++....+.+. |++|+
T Consensus 79 ~CP-l~~G~-~~~y~~~lpV~~~~P~~~~~v~~~L~-----d~~~~ 117 (130)
T 1nep_A 79 RCP-IEKDK-TYNYVNKLPVKNEYPSIKVVVEWELT-----DDKNQ 117 (130)
T ss_dssp CSS-BCTTC-EEEEEEEEECCTTSCSSEEEEEEEEE-----CTTSC
T ss_pred cCc-ccCCc-EEEEEEEeEecccCCCccEEEEEEEE-----cCCCC
Confidence 666 67898 89998665533 6889999888887 56665
No 14
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.51 E-value=1e+02 Score=23.32 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhChhhhhhcCCCCCHHHHHHHHHHcCCCCChhh-hhheeecC
Q 018092 7 VKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPT-RILYRFCD 64 (361)
Q Consensus 7 ~~~v~~~W~rie~wl~~~~p~~~~~L~~gate~~i~~~E~~lg~~LP~~~-r~~yr~hn 64 (361)
-..+...++.|..-+......+...| |.++.+|+.+|.+....+-+-. ..|..|.+
T Consensus 10 ~~~l~~~~~~ia~~lg~~Wk~Lar~L--g~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~ 66 (99)
T 1fad_A 10 EAYLQVAFDIVCDNVGRDWKRLAREL--KVSEAKMDGIEEKYPRSLSERVRESLKVWKN 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHc--CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 46677788888877777777777777 8999999999998754443322 33444443
No 15
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=20.86 E-value=2.3e+02 Score=21.42 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=6.9
Q ss_pred eeeCCeEEEEE
Q 018092 221 AVTNGVKIRAS 231 (361)
Q Consensus 221 ~~T~gI~V~v~ 231 (361)
...+|++|...
T Consensus 18 ~~~~~v~~~~~ 28 (112)
T 1iby_A 18 LNVEGVTVKNI 28 (112)
T ss_dssp EEETTEEEEEE
T ss_pred EEeccEEEEEE
Confidence 35577777763
Done!