Query 018093
Match_columns 361
No_of_seqs 169 out of 335
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yfw_B Histone H4, H4; cell cy 99.2 1.3E-11 4.6E-16 102.0 7.1 81 20-100 20-101 (103)
2 1tzy_D Histone H4-VI; histone- 99.2 1.5E-11 5E-16 101.7 6.3 79 23-101 23-102 (103)
3 1id3_B Histone H4; nucleosome 99.0 3.9E-10 1.3E-14 93.1 6.2 81 20-100 19-100 (102)
4 2hue_C Histone H4; mini beta s 98.8 8.2E-09 2.8E-13 82.2 6.5 71 30-100 11-82 (84)
5 1taf_A TFIID TBP associated fa 98.7 4.4E-08 1.5E-12 75.3 8.9 61 33-93 5-65 (68)
6 1ku5_A HPHA, archaeal histon; 98.5 3.7E-07 1.3E-11 69.9 7.7 61 32-92 9-69 (70)
7 3b0c_T CENP-T, centromere prot 98.4 8.9E-07 3E-11 74.0 7.9 68 30-97 8-75 (111)
8 3b0b_B CENP-S, centromere prot 98.4 7.9E-07 2.7E-11 74.0 7.3 68 27-94 17-87 (107)
9 4dra_A Centromere protein S; D 98.4 7E-07 2.4E-11 74.8 6.9 73 21-93 19-94 (113)
10 3v9r_A MHF1, uncharacterized p 98.3 1.5E-06 5E-11 70.3 8.1 66 27-93 10-79 (90)
11 1taf_B TFIID TBP associated fa 98.3 2.6E-06 9E-11 65.8 8.2 60 33-92 10-69 (70)
12 2ly8_A Budding yeast chaperone 98.3 1.6E-06 5.4E-11 73.6 7.5 62 40-101 58-120 (121)
13 3vh5_A CENP-S; histone fold, c 98.2 2.3E-06 7.9E-11 74.1 7.0 66 28-93 18-86 (140)
14 2l5a_A Histone H3-like centrom 98.2 1.4E-06 4.7E-11 81.3 5.1 73 28-100 160-233 (235)
15 1b67_A Protein (histone HMFA); 97.9 3E-05 1E-09 58.7 7.7 61 34-94 7-67 (68)
16 1n1j_A NF-YB; histone-like PAI 97.9 0.00014 4.7E-09 58.5 10.8 65 33-97 12-78 (93)
17 1f1e_A Histone fold protein; a 97.8 5.9E-05 2E-09 66.4 8.3 65 33-97 8-73 (154)
18 1f1e_A Histone fold protein; a 97.8 6.4E-05 2.2E-09 66.2 8.1 62 33-94 86-147 (154)
19 1jfi_B DR1 protein, transcript 97.5 0.00047 1.6E-08 62.0 10.6 65 33-97 19-84 (179)
20 2byk_B Chrac-14; nucleosome sl 97.5 0.00068 2.3E-08 57.8 10.7 64 34-97 14-79 (128)
21 3b0c_W CENP-W, centromere prot 97.3 0.0013 4.3E-08 51.0 8.7 60 35-94 10-70 (76)
22 2hue_B Histone H3; mini beta s 96.9 0.0053 1.8E-07 48.0 8.8 54 43-96 22-75 (77)
23 3nqj_A Histone H3-like centrom 96.8 0.0052 1.8E-07 48.6 8.5 53 45-97 26-78 (82)
24 3nqu_A Histone H3-like centrom 96.6 0.008 2.7E-07 52.0 8.5 53 45-97 84-136 (140)
25 3r45_A Histone H3-like centrom 96.3 0.012 4E-07 51.7 8.0 65 32-96 84-151 (156)
26 2yfv_A Histone H3-like centrom 96.3 0.012 4.2E-07 48.2 7.6 48 45-92 51-98 (100)
27 1tzy_C Histone H3; histone-fol 96.1 0.022 7.7E-07 49.0 8.5 54 43-96 81-134 (136)
28 1n1j_B NF-YC; histone-like PAI 95.7 0.022 7.4E-07 46.0 6.6 62 33-94 23-85 (97)
29 2f8n_G Core histone macro-H2A. 95.7 0.02 6.7E-07 48.3 6.3 59 35-93 28-87 (120)
30 1tzy_A Histone H2A-IV; histone 95.1 0.021 7.3E-07 48.7 4.6 69 25-93 18-90 (129)
31 1f66_C Histone H2A.Z; nucleoso 95.1 0.035 1.2E-06 47.3 5.9 70 24-93 19-93 (128)
32 2nqb_D Histone H2B; nucleosome 94.7 0.11 3.6E-06 44.0 8.0 60 35-94 39-99 (123)
33 1tzy_B Histone H2B; histone-fo 94.6 0.12 4E-06 44.0 7.9 60 35-94 42-102 (126)
34 1id3_C Histone H2A.1; nucleoso 94.5 0.063 2.2E-06 45.8 6.2 59 35-93 31-90 (131)
35 2nqb_C Histone H2A; nucleosome 94.3 0.13 4.4E-06 43.4 7.6 68 26-93 17-88 (123)
36 2f8n_K Histone H2A type 1; nuc 93.7 0.19 6.6E-06 43.8 7.7 68 26-93 38-109 (149)
37 1jfi_A Transcription regulator 93.4 0.12 4.2E-06 41.7 5.7 59 35-93 17-76 (98)
38 4g92_C HAPE; transcription fac 92.1 0.33 1.1E-05 40.5 6.6 59 35-93 47-106 (119)
39 2jss_A Chimera of histone H2B. 91.8 0.75 2.6E-05 41.3 9.2 61 34-94 8-69 (192)
40 2jss_A Chimera of histone H2B. 89.4 1 3.5E-05 40.5 7.7 59 35-93 111-171 (192)
41 2l5a_A Histone H3-like centrom 88.5 0.76 2.6E-05 42.8 6.4 52 46-97 36-87 (235)
42 1h3o_B Transcription initiatio 88.4 1.8 6.1E-05 33.5 7.5 61 30-93 10-70 (76)
43 2byk_A Chrac-16; nucleosome sl 84.3 1.5 5.1E-05 37.7 5.6 60 35-94 25-86 (140)
44 4dra_E Centromere protein X; D 75.7 20 0.00068 28.2 9.0 59 33-92 16-78 (84)
45 3uk6_A RUVB-like 2; hexameric 71.2 20 0.00069 33.3 9.6 61 32-93 265-329 (368)
46 3b0b_C CENP-X, centromere prot 64.1 28 0.00097 27.0 7.5 60 33-93 12-75 (81)
47 3kw6_A 26S protease regulatory 56.5 11 0.00036 28.0 3.7 51 44-94 19-73 (78)
48 3k1j_A LON protease, ATP-depen 54.9 65 0.0022 32.9 10.6 51 43-93 311-374 (604)
49 1g8p_A Magnesium-chelatase 38 53.1 70 0.0024 29.1 9.6 51 43-94 265-322 (350)
50 2c9o_A RUVB-like 1; hexameric 50.9 57 0.002 31.9 9.1 63 30-93 370-436 (456)
51 2ly8_A Budding yeast chaperone 48.7 36 0.0012 28.4 6.1 35 46-80 26-60 (121)
52 2r44_A Uncharacterized protein 48.2 84 0.0029 28.7 9.4 48 47-94 227-297 (331)
53 1h3o_A Transcription initiatio 46.0 37 0.0013 26.1 5.3 48 29-76 6-53 (75)
54 3vlf_B 26S protease regulatory 45.1 23 0.00077 27.1 4.1 48 50-97 23-74 (88)
55 1in4_A RUVB, holliday junction 44.5 88 0.003 29.1 8.9 71 26-97 180-253 (334)
56 3bos_A Putative DNA replicatio 44.3 71 0.0024 26.9 7.7 58 33-92 181-241 (242)
57 2chg_A Replication factor C sm 37.9 87 0.003 25.7 7.0 59 31-92 166-224 (226)
58 2v1u_A Cell division control p 36.4 1.3E+02 0.0046 27.3 8.7 49 46-94 222-276 (387)
59 1bh9_A TAFII18; histone fold, 33.5 1.2E+02 0.004 20.9 6.3 40 33-72 4-44 (45)
60 1bh9_B TAFII28; histone fold, 33.2 1.7E+02 0.0059 22.8 8.7 64 28-95 19-83 (89)
61 1fnn_A CDC6P, cell division co 29.3 2.4E+02 0.0081 25.7 9.2 51 46-96 214-276 (389)
62 2dzn_B 26S protease regulatory 26.7 63 0.0021 24.0 3.8 32 63-94 37-68 (82)
63 3h4m_A Proteasome-activating n 26.6 86 0.003 27.8 5.4 57 36-94 198-258 (285)
64 2qz4_A Paraplegin; AAA+, SPG7, 25.6 47 0.0016 28.9 3.4 61 34-94 185-249 (262)
65 3pfi_A Holliday junction ATP-d 25.3 1.8E+02 0.0061 26.4 7.5 65 32-97 190-257 (338)
66 1jr3_D DNA polymerase III, del 24.9 1.6E+02 0.0054 27.1 7.1 64 31-95 147-210 (343)
67 2qby_A CDC6 homolog 1, cell di 24.3 3.7E+02 0.013 24.2 9.4 50 45-94 217-272 (386)
68 2qby_B CDC6 homolog 3, cell di 22.7 1.9E+02 0.0064 26.5 7.1 47 46-94 218-270 (384)
69 2krk_A 26S protease regulatory 22.0 89 0.003 23.7 3.9 43 52-94 35-81 (86)
70 3i2w_A Syndapin, LD46328P; EFC 21.6 2.7E+02 0.0093 25.0 7.9 71 36-126 200-275 (290)
71 1njg_A DNA polymerase III subu 21.4 1.6E+02 0.0055 24.2 5.8 58 32-91 191-248 (250)
72 1sxj_D Activator 1 41 kDa subu 20.0 70 0.0024 29.1 3.5 59 33-92 199-261 (353)
No 1
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.23 E-value=1.3e-11 Score=101.98 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=64.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-C
Q 018093 20 KFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-Q 98 (361)
Q Consensus 20 ~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~ 98 (361)
+....+-.+.+-...|.+|++..|+..++..|.+.|.+++..|+.+|++.+..||+|++|++++..||.+||+.+|.+ +
T Consensus 20 ~~~~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 20 RKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp ----------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 344455566688889999999999999999999999999999999999999999999999999999999999999876 5
Q ss_pred CC
Q 018093 99 GF 100 (361)
Q Consensus 99 gf 100 (361)
||
T Consensus 100 Gf 101 (103)
T 2yfw_B 100 GF 101 (103)
T ss_dssp --
T ss_pred CC
Confidence 55
No 2
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.21 E-value=1.5e-11 Score=101.73 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCCC
Q 018093 23 GDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGFS 101 (361)
Q Consensus 23 ~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf~ 101 (361)
..+-.+.+-...|..|++..|+..++..|.+.|.+++..|+.+|++.+..||+|++|++++..||.+||+.+|.+ +||.
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lYGf~ 102 (103)
T 1tzy_D 23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 102 (103)
T ss_dssp CCCGGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEESCC
T ss_pred hhhhcccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCcCCC
Confidence 344444588889999999999999999999999999999999999999999999999999999999999999876 5663
No 3
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.00 E-value=3.9e-10 Score=93.13 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-C
Q 018093 20 KFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-Q 98 (361)
Q Consensus 20 ~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~ 98 (361)
+....+..+.|-..+|..|+++.|...++..|.+.|.+++..||++|++.+..||+|++|.+++..||.+||+.+|.+ +
T Consensus 19 ~k~~r~~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 19 RKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp -----CCGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHHHhccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 333445555688889999999999999999999999999999999999999999999999999999999999999877 4
Q ss_pred CC
Q 018093 99 GF 100 (361)
Q Consensus 99 gf 100 (361)
||
T Consensus 99 Gf 100 (102)
T 1id3_B 99 GF 100 (102)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 4
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.79 E-value=8.2e-09 Score=82.20 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCC
Q 018093 30 IAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGF 100 (361)
Q Consensus 30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf 100 (361)
+-..+|..|+++.|...++..|.+.|.+++..|+.++++.+..||+|++|.+++..||.+||+.+|.+ +||
T Consensus 11 ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lYgf 82 (84)
T 2hue_C 11 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 82 (84)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEESC
T ss_pred CCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCCCC
Confidence 44567889999999999999999999999999999999999999999999999999999999999876 455
No 5
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.74 E-value=4.4e-08 Score=75.33 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
++|.+||+++|-+.+++.+...|.+.+.+|..+|++.+..||+||||.+++..||.+|.+.
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999874
No 6
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.48 E-value=3.7e-07 Score=69.93 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018093 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE 92 (361)
Q Consensus 32 r~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~ 92 (361)
...|..|++..|-..++..|.+.|.+++..|+.++...+..||+|+||.+++..||.+|++
T Consensus 9 ~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 9 IAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred hHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3467888899999999999999999999999999999999999999999999999999985
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.37 E-value=8.9e-07 Score=74.04 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 30 IAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
+-..+|..|.+..|=..++..|.+.|.+++..|+..+++.+..||+||||.+++..||.+||+..|..
T Consensus 8 lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 8 IASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp --CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 33456777888889999999999999999999999999999999999999999999999999998877
No 8
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.36 E-value=7.9e-07 Score=73.97 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 27 SQAIAKVAVAQICERVGF---QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 27 ~r~lLr~aVAqIL~~~GF---~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
..+-+.-+|.+||+..|= ..+++.++..|++++.+|+.+|+..+..||.||||.+++..||.++++..
T Consensus 17 LKaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 17 LRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 344566669999999987 57999999999999999999999999999999999999999999999863
No 9
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.35 E-value=7e-07 Score=74.85 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=65.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhCCcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 21 FSGDDFSQAIAKVAVAQICERVGFQT---FQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 21 ~~~def~r~lLr~aVAqIL~~~GF~s---as~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
.+..+-..+-|--.|++||+..|=+. +++.++..|++++.+|+.+|+..+..||.||||.+++..||.++++.
T Consensus 19 ~~~~~rLKaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 19 FSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 44455566778889999999998776 99999999999999999999999999999999999999999999885
No 10
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.5e-06 Score=70.26 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHh----CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 27 SQAIAKVAVAQICERV----GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 27 ~r~lLr~aVAqIL~~~----GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
..+-|.-+|++||++. |.. +++.++..|++++.+|+.+++..+..||.||||.+++..||.++++.
T Consensus 10 LKaal~~~V~ki~~e~~~~~g~~-vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 10 LKARLWIRVEERLQQVLSSEDIK-YTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCce-eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4456777899999988 443 89999999999999999999999999999999999999999999875
No 11
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.28 E-value=2.6e-06 Score=65.76 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018093 33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE 92 (361)
Q Consensus 33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~ 92 (361)
..|-.|++++|.+..+..|...|++-+..++.+|.+.+..|+.|++|+..+..||.+||+
T Consensus 10 ~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 567889999999999999999999999999999999999999999999999999999985
No 12
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.6e-06 Score=73.58 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=57.9
Q ss_pred HHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCCC
Q 018093 40 ERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGFS 101 (361)
Q Consensus 40 ~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf~ 101 (361)
...|-..++..+.+.+.+++..|+++|++.+..||+|++|.+++..||.+||+..|.+ .||.
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lygf~ 120 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 120 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGGCC
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCCCC
Confidence 3478999999999999999999999999999999999999999999999999999998 5553
No 13
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.20 E-value=2.3e-06 Score=74.08 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhCCcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 28 QAIAKVAVAQICERVGFQT---FQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 28 r~lLr~aVAqIL~~~GF~s---as~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
.+-|.-+|++||+..|=.. +++.++..|++++.+|+.+|+..+..||.||||.+++..||.++++.
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4456678999999875443 89999999999999999999999999999999999999999999986
No 14
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.4e-06 Score=81.26 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCC
Q 018093 28 QAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGF 100 (361)
Q Consensus 28 r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf 100 (361)
+.++...+..+++..|-..++..+.+.+.+++..|+++|++.+..||+||+|.+++..||.+||+.+|-+ +||
T Consensus 160 rD~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr~lYGf 233 (235)
T 2l5a_A 160 RDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF 233 (235)
T ss_dssp HHHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCCccccC
Confidence 3344433446788999999999999999999999999999999999999999999999999999998765 444
No 15
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.93 E-value=3e-05 Score=58.74 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 34 AVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 34 aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
.|..|+++.|=..++..|++.|.+.++.||..|...+..+|.|++|.+.+..||..|++.+
T Consensus 7 ~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 7 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3555666667778999999999999999999999999999999999999999999999865
No 16
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.85 E-value=0.00014 Score=58.45 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 33 VAVAQICERVGF--QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 33 ~aVAqIL~~~GF--~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
..|..|.+..|= ..++..|++.|+..+..||..|+..+..+|.+++|.+++..||..|++.+|..
T Consensus 12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~ 78 (93)
T 1n1j_A 12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD 78 (93)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCG
T ss_pred hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 346677777753 57999999999999999999999999999999999999999999999988887
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.79 E-value=5.9e-05 Score=66.43 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=62.1
Q ss_pred HHHHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 33 VAVAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 33 ~aVAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
..|..|++.. |=..++..|-+.|.+++..|+..+.+.+..||+|+||.+++..||..||..+|+.
T Consensus 8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~ 73 (154)
T 1f1e_A 8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE 73 (154)
T ss_dssp HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCT
T ss_pred cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccc
Confidence 4678888888 9999999999999999999999999999999999999999999999999999887
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.77 E-value=6.4e-05 Score=66.18 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
..|..|++..|-..++..|.+.|.+++..|+..|.+.+..||+|++|.+++..||.+||+..
T Consensus 86 a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 86 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999999999999999999999999873
No 19
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.55 E-value=0.00047 Score=62.01 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=58.3
Q ss_pred HHHHHHHHHhC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 33 VAVAQICERVG-FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 33 ~aVAqIL~~~G-F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
..|..|++.++ =..++..|.+.|++.+..||..|+..+...|.+.+|.+++..||..||+++|+.
T Consensus 19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 45566666664 257899999999999999999999999999999999999999999999999998
No 20
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.52 E-value=0.00068 Score=57.84 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=58.5
Q ss_pred HHHHHHHHhC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 34 AVAQICERVG--FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 34 aVAqIL~~~G--F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
.|..|++.++ -..++..|...|+..+..||..|+..+..+|.+.+|.+++..||..||..+|..
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 4667777654 567999999999999999999999999999999999999999999999999987
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.28 E-value=0.0013 Score=51.00 Aligned_cols=60 Identities=5% Similarity=-0.079 Sum_probs=51.9
Q ss_pred HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 35 VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 35 VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
|..|++++ +=..++..|.+.+.+.+..|+..|+..+...|.+++|.+.+..||..|++++
T Consensus 10 V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 10 LRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 44555532 4346889999999999999999999999999999999999999999999864
No 22
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.88 E-value=0.0053 Score=48.04 Aligned_cols=54 Identities=22% Similarity=0.087 Sum_probs=49.7
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018093 43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL 96 (361)
Q Consensus 43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi 96 (361)
|=..++.+|+..|.+..+.|+..|...+...|.||+|.+..+.|+.+|.+--|.
T Consensus 22 ~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 22 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp SSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 335789999999999999999999999999999999999999999999887664
No 23
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.84 E-value=0.0052 Score=48.63 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=48.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
..++.+|+..|.+..+.|+..|...+...|.||+|.+..+.|+.+|.+--|..
T Consensus 26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 37899999999999999999999999999999999999999999999877765
No 24
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.57 E-value=0.008 Score=52.03 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=48.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
..++.+|++.|.+.++.||..|...+...|.||+|.++...||.+|.+--|+.
T Consensus 84 ~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 84 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 36899999999999999999999999999999999999999999999987776
No 25
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.31 E-value=0.012 Score=51.74 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhC---CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018093 32 KVAVAQICERVG---FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL 96 (361)
Q Consensus 32 r~aVAqIL~~~G---F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi 96 (361)
.+.|..|++... =..++.+|++.|.+.++.||..|...+...|.||+|.++...||.+|.+--|.
T Consensus 84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 344445554321 13688999999999999999999999999999999999999999999875443
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.30 E-value=0.012 Score=48.15 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=45.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018093 45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE 92 (361)
Q Consensus 45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~ 92 (361)
..++.+|+..|.+.++.|+..|...+...|.||+|.+....|+.+|.+
T Consensus 51 ~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 51 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999875
No 27
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=96.08 E-value=0.022 Score=49.00 Aligned_cols=54 Identities=22% Similarity=0.083 Sum_probs=49.7
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018093 43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL 96 (361)
Q Consensus 43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi 96 (361)
|=..++.+|++.|.+..+.||..|...+...|.||+|.+....||.+|.+--|.
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 335789999999999999999999999999999999999999999999887664
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=95.72 E-value=0.022 Score=46.02 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 33 VAVAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 33 ~aVAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
.-|..|++..+. ..++..|...++..++.|+.+|+..+..+|...+|...+..||..|++..
T Consensus 23 arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 23 ARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp HHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 346788888877 57999999999999999999999999999999999999999999998753
No 29
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.66 E-value=0.02 Score=48.29 Aligned_cols=59 Identities=8% Similarity=-0.069 Sum_probs=53.9
Q ss_pred HHHHHHHhC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 35 VAQICERVG-FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 35 VAqIL~~~G-F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
|.++|+..+ ...++..|--.|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 28 i~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 28 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 456688888 56899999999999999999999999999999999999999999999883
No 30
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.07 E-value=0.021 Score=48.67 Aligned_cols=69 Identities=12% Similarity=-0.054 Sum_probs=58.1
Q ss_pred HHHHHHHHHH---HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 25 DFSQAIAKVA---VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 25 ef~r~lLr~a---VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
--.++-|+-- |-++|+.. +...++..|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 18 rS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 18 RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3345544433 45567764 888999999999999999999999999999999999999999999999883
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=95.06 E-value=0.035 Score=47.29 Aligned_cols=70 Identities=9% Similarity=-0.130 Sum_probs=59.2
Q ss_pred hHHHHHHHHHH---HHHHHHHhCC-c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 24 DDFSQAIAKVA---VAQICERVGF-Q-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 24 def~r~lLr~a---VAqIL~~~GF-~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
.--.++-|+-- |..+|+..++ . .++..|--.|+.+++.+..+|...+-.+|.+.+|+.+++.||.+|.+.
T Consensus 19 srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp CHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34455555444 4567888885 3 899999999999999999999999999999999999999999999884
No 32
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=94.73 E-value=0.11 Score=44.03 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=53.7
Q ss_pred HHHHHHHhCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 35 VAQICERVGFQ-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 35 VAqIL~~~GF~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
|-.+|++++-+ +++..|++.+..++...++.|+..+...+.+.+|.+.+..||..|.+.+
T Consensus 39 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 39 IYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 44556666766 7899999999999999999999999999999999999999999999864
No 33
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=94.59 E-value=0.12 Score=43.95 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHhCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 35 VAQICERVGFQ-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 35 VAqIL~~~GF~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
|-.+|++++-+ +++..|+..+..++...++.|+..+...+.+.+|.+.+..||..|.+.+
T Consensus 42 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 42 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 45566777777 7999999999999999999999999999999999999999999999864
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=94.51 E-value=0.063 Score=45.84 Aligned_cols=59 Identities=12% Similarity=-0.046 Sum_probs=53.7
Q ss_pred HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 35 VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 35 VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
|.++|+.. +...++..|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 31 I~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 31 VHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 45667764 788999999999999999999999999999999999999999999999883
No 35
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=94.31 E-value=0.13 Score=43.45 Aligned_cols=68 Identities=10% Similarity=-0.059 Sum_probs=57.8
Q ss_pred HHHHHHHHH---HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 26 FSQAIAKVA---VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 26 f~r~lLr~a---VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
-.++-|+-- |-++|+.. +...++..|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 17 s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 17 SNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 345544433 44557775 788999999999999999999999999999999999999999999999883
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=93.72 E-value=0.19 Score=43.80 Aligned_cols=68 Identities=12% Similarity=-0.056 Sum_probs=58.1
Q ss_pred HHHHHHHHH---HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 26 FSQAIAKVA---VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 26 f~r~lLr~a---VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
-.++-|+-- |.++|+.. +...+...|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 38 S~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 38 SSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 345544433 45667775 888999999999999999999999999999999999999999999999884
No 37
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.45 E-value=0.12 Score=41.66 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=49.9
Q ss_pred HHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 35 VAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 35 VAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
|-.|++..+. ..++..|.-.|+.+++-|+.+|+..+..+|...+|...+..||..|.+.
T Consensus 17 IkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 17 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred HHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5677787766 6899999999999999999999999999999999999999999887764
No 38
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=92.06 E-value=0.33 Score=40.52 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=51.5
Q ss_pred HHHHHHH-hCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 35 VAQICER-VGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 35 VAqIL~~-~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
|..|++. -....++..|...++..++-||..|...|..+|...+|...+..||..|+..
T Consensus 47 IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 47 IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 3445543 3456899999999999999999999999999999999999999999999875
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=91.82 E-value=0.75 Score=41.34 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=53.1
Q ss_pred HHHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 34 AVAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 34 aVAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
.|-.+|++++- .+++..|++.|..++.+.+..|+..+...+.+.+|.+++..||..|.+.+
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 34455666655 46999999999999999999999999999999999999999999999853
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=89.36 E-value=1 Score=40.48 Aligned_cols=59 Identities=10% Similarity=-0.113 Sum_probs=52.3
Q ss_pred HHHHHHHh-CC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 35 VAQICERV-GF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 35 VAqIL~~~-GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
|.++|+.. +. ..++..|-..|+.+++.+..+|...+-.+|.+++|+..++.|+.+|.+.
T Consensus 111 i~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 111 IKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred HHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 45567765 44 4899999999999999999999999999999999999999999999883
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=88.53 E-value=0.76 Score=42.78 Aligned_cols=52 Identities=17% Similarity=0.062 Sum_probs=48.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 46 TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 46 sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
..+.+|+..|.+..+.||-.|...+...|.||.|.+..+.|+.+|.+--|..
T Consensus 36 Rfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 36 RWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred eecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 5788999999999999999999999999999999999999999998876655
No 42
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=88.43 E-value=1.8 Score=33.54 Aligned_cols=61 Identities=23% Similarity=0.121 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 30 IAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
-|+..|.+|. +=....+.+-+.|.+++..|+.++...+...|-|-+=....+.||.+.|+.
T Consensus 10 ~L~~Lv~~id---p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 10 KLQDLVREVD---PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp HHHHHHHHHC---SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 3444455553 345678899999999999999999999999999977777899999999986
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=84.31 E-value=1.5 Score=37.67 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=49.5
Q ss_pred HHHHHHHhC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCHHHHHHHHHHc
Q 018093 35 VAQICERVG-FQTFQQSALGKLADIAVRYINSVGKAANFYA-NLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 35 VAqIL~~~G-F~sas~sALe~Ltdl~~~YI~~L~~~a~~yA-e~AgRT~p~~~DV~~AL~dm 94 (361)
|-.|++... ...++..|.-.++..+.-||..|+..+..+| ...+|...+..||..|+...
T Consensus 25 IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 25 VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ----CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred HHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 344555433 3478999999999999999999999999999 99999999999999999863
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=75.74 E-value=20 Score=28.16 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018093 33 VAVAQICERVGFQ----TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE 92 (361)
Q Consensus 33 ~aVAqIL~~~GF~----sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~ 92 (361)
..|+.||+ ..|. .++..|+..+++.+.-|+.+-...+...|+.-+.......|+...+=
T Consensus 16 ~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 16 ELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp HHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55678888 7885 79999999999999999999999998889888888888998877654
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.16 E-value=20 Score=33.28 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCcccchhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 32 KVAVAQICERVGFQTFQQSALGKLADIAV----RYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 32 r~aVAqIL~~~GF~sas~sALe~Ltdl~~----~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
+..+...|...|.. +++.+++.|..... +++.+++..+..+|...++..++..||..++..
T Consensus 265 ~~il~~~~~~~~~~-~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 265 KQILRIRCEEEDVE-MSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHTTCC-BCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 34445566677776 67889999998874 788899999999999999999999999999986
No 46
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=64.10 E-value=28 Score=27.00 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 33 VAVAQICERVGFQ----TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 33 ~aVAqIL~~~GF~----sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
..|+.|++. .|. .++..|+..+++.+.-|+.+-...+..-|..-|-......|+...+-.
T Consensus 12 ~lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 12 ETVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 345666665 666 789999999999999999998888888777777788888888765543
No 47
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=56.46 E-value=11 Score=28.01 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=40.8
Q ss_pred CcccchhHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 44 FQTFQQSALGKLADIAVRY----INSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 44 F~sas~sALe~Ltdl~~~Y----I~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
+......-++.|...+..| |..+++.+..+|-..++..++..|+..||..+
T Consensus 19 ~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 19 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp SEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 4333444577777766666 89999999999999999999999999999874
No 48
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=54.89 E-value=65 Score=32.88 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCcccchhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 43 GFQTFQQSALGKLADIA-------------VRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 43 GF~sas~sALe~Ltdl~-------------~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
..-.+++.|++.|.... .+.+.++.+.+..+|...++..++..||..|+..
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 34578899999998755 5788899999999999999999999999999975
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=53.05 E-value=70 Score=29.12 Aligned_cols=51 Identities=16% Similarity=0.020 Sum_probs=43.4
Q ss_pred CCcccchhHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 43 GFQTFQQSALGKLADIAV-------RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 43 GF~sas~sALe~Ltdl~~-------~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
++ .+++.+++.|.+... +.+..+.+.+..+|...+|..++..||..++..+
T Consensus 265 ~~-~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KV-EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GC-BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 44 578899999988865 6788888999999999999999999999888763
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.89 E-value=57 Score=31.93 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCcccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018093 30 IAKVAVAQICERVGFQTFQQSALGKLADIA----VRYINSVGKAANFYANLSGRAEGNVFDIFQGLED 93 (361)
Q Consensus 30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~----~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d 93 (361)
-+...+...|...|+. ++..+++.+..+. .++...+...+..+|...|+..++..||..++..
T Consensus 370 e~~~iL~~~~~~~~~~-~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 370 EMKQIIKIRAQTEGIN-ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHHHHHHTCC-BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 3444445566667776 6788999888876 3678888899999999999999999999999875
No 51
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=48.66 E-value=36 Score=28.43 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018093 46 TFQQSALGKLADIAVRYINSVGKAANFYANLSGRA 80 (361)
Q Consensus 46 sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT 80 (361)
..+.+|+..|.+..+.||-.|...+...|.||.|.
T Consensus 26 Rfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 26 RWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 58889999999999999999999999999999664
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=48.23 E-value=84 Score=28.69 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 47 FQQSALGKLADIA-----------------------VRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 47 as~sALe~Ltdl~-----------------------~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
++..+++.+.+++ .+-+..+.+.+..+|.+.||..++..||..++..+
T Consensus 227 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 227 ISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp CCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5667788887765 45566788889999999999999999999999874
No 53
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=46.04 E-value=37 Score=26.06 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018093 29 AIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANL 76 (361)
Q Consensus 29 ~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~ 76 (361)
..|++=|..|....|...+++.+...+.-.++.+|..|.......|+|
T Consensus 6 ~~Lqkri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 6 APLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 467778889999999999999999999999999999999998887776
No 54
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=45.09 E-value=23 Score=27.08 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 50 SALGKLADIAVRY----INSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 50 sALe~Ltdl~~~Y----I~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
.-++.|...+..| |..|++.|..+|-..++..++..|+..||..+-.+
T Consensus 23 vdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 23 IRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 3466666666555 88899999999999999999999999999987554
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=44.49 E-value=88 Score=29.07 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 26 FSQAIAKVAVAQICERVGFQTFQQSALGKLADIA---VRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 26 f~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~---~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
+...-+...+..+++..|.. .+..+++.|.+.. .+.+..+...+..||...++..++..++..++..+.++
T Consensus 180 ~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 180 YTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 33344555556666667776 6677888887653 35677888888899999999999999999999998776
No 56
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=44.30 E-value=71 Score=26.92 Aligned_cols=58 Identities=14% Similarity=0.030 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCcccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018093 33 VAVAQICERVGFQTFQQSALGKLADIAV---RYINSVGKAANFYANLSGRAEGNVFDIFQGLE 92 (361)
Q Consensus 33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~---~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~ 92 (361)
..+...+...|+. +++.+++.|..... +.+.++...+..+|...++ .++..||..+|.
T Consensus 181 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 181 AALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 4455666677875 67889998888765 4555666666677765565 588999988774
No 57
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=37.95 E-value=87 Score=25.67 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018093 31 AKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE 92 (361)
Q Consensus 31 Lr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~ 92 (361)
++..+.+.+...|.. +++.+++.|.......+..+...+...+..+ ..++..||..++.
T Consensus 166 ~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 166 MKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 344556677777876 6778888888887777777777766666655 5788888888764
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=36.37 E-value=1.3e+02 Score=27.27 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=42.2
Q ss_pred ccchhHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 46 TFQQSALGKLADIAV------RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 46 sas~sALe~Ltdl~~------~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
.+++.+++.+..... +++.+++..+..+|...++..++..||..++..+
T Consensus 222 ~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 222 VLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp TBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 467789999988887 7778888888888888899999999999999875
No 59
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=33.46 E-value=1.2e+02 Score=20.86 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018093 33 VAVAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANF 72 (361)
Q Consensus 33 ~aVAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~ 72 (361)
.-|.+|+-..|= ..-.+.....|.|++..||.+++..|..
T Consensus 4 ~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 4 KELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446778877774 2455678899999999999999988753
No 60
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=33.19 E-value=1.7e+02 Score=22.79 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHcC
Q 018093 28 QAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN-VFDIFQGLEDLG 95 (361)
Q Consensus 28 r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~-~~DV~~AL~dmG 95 (361)
...+++.|.+++ |- +++......|.-+..-|+-+|...|....+.-+.+.|. +..|..|++.+.
T Consensus 19 k~~vKrl~~~~~---~~-~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 19 KAAIKRLIQSIT---GT-SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHHHHH---SS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 345666666665 33 57889999999999999999999999999987766555 788888877653
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=29.34 E-value=2.4e+02 Score=25.72 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=43.2
Q ss_pred ccchhHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018093 46 TFQQSALGKLADIA------------VRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL 96 (361)
Q Consensus 46 sas~sALe~Ltdl~------------~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi 96 (361)
.+++.+++.+.+.. .+++.+++..+..+|...++..++..||..++..+.-
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh
Confidence 57788999999888 5778888888888888889999999999999988643
No 62
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=26.72 E-value=63 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 63 INSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 63 I~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
|..+++.|...|-..++..++..|+..|+..+
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 56677777777878888999999999999986
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=26.63 E-value=86 Score=27.75 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=41.6
Q ss_pred HHHHHHhCCcccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 36 AQICERVGFQTFQQSALGKLADIA----VRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 36 AqIL~~~GF~sas~sALe~Ltdl~----~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
...+...+.. ....++.|...+ .+-|..++..+..+|...++..++..||..|+.++
T Consensus 198 ~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 198 KIHTRKMNLA--EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHTTSCBC--TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHhcCCCC--CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 3445544443 333456665554 34688899999999999999999999999999874
No 64
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.65 E-value=47 Score=28.95 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCcccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 34 AVAQICERVGFQTFQQSALGKLADIA----VRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 34 aVAqIL~~~GF~sas~sALe~Ltdl~----~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
.+...++..+.......+++.|...+ .+.|..++..+..+|...++..++..|+..|+.++
T Consensus 185 il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 185 IFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44556667777654444455565543 34677788888777777778888888988888864
No 65
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=25.31 E-value=1.8e+02 Score=26.38 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCcccchhHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018093 32 KVAVAQICERVGFQTFQQSALGKLADIA---VRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD 97 (361)
Q Consensus 32 r~aVAqIL~~~GF~sas~sALe~Ltdl~---~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~ 97 (361)
...+...+...|.. +++.+++.|.... .+.+.++...+..++...+...++..|+..++..+++.
T Consensus 190 ~~il~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 190 ALILQKAALKLNKT-CEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHTTCE-ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 34455667777765 6788888888753 45666777777778888888899999999999988776
No 66
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.90 E-value=1.6e+02 Score=27.07 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcC
Q 018093 31 AKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLG 95 (361)
Q Consensus 31 Lr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmG 95 (361)
+..-|.++|+..|.. +++.|++.|.+.+..=+..+...+...+..++....+..||...+-...
T Consensus 147 l~~~l~~~~~~~g~~-i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 147 LPRWVAARAKQLNLE-LDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHHHHHHHTTCE-ECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhh
Confidence 445667888999987 7889999999887665555555555555544555788888877666543
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=24.29 E-value=3.7e+02 Score=24.17 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=40.0
Q ss_pred cccchhHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 45 QTFQQSALGKLADIAV------RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 45 ~sas~sALe~Ltdl~~------~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
..++..+++.+.+... +++.+++..+...+...++..++..||..++.++
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4577888888888776 4566777777777777788999999999998875
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.68 E-value=1.9e+02 Score=26.48 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=35.4
Q ss_pred ccchhHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 46 TFQQSALGKLADIAV------RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 46 sas~sALe~Ltdl~~------~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
.+++.+++.+.+... +++.+++..+..+|. +...++..||..++.++
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 567889999988876 345566666666655 66789999999998875
No 69
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=22.01 E-value=89 Score=23.69 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018093 52 LGKLADIAVRY----INSVGKAANFYANLSGRAEGNVFDIFQGLEDL 94 (361)
Q Consensus 52 Le~Ltdl~~~Y----I~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm 94 (361)
++.|...+..| |..|++.|..+|-..++..++..|+..||..+
T Consensus 35 l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 35 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45555544443 77888899888888888999999999999864
No 70
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=21.56 E-value=2.7e+02 Score=25.05 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=50.6
Q ss_pred HHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCH----HHHHHHHHHcCCCCCCCCCccchhhc
Q 018093 36 AQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAE-GNV----FDIFQGLEDLGLDQGFSGASDINHCL 110 (361)
Q Consensus 36 AqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~-p~~----~DV~~AL~dmGi~~gf~gas~~~~~l 110 (361)
+.-.+.. |...-+.+++.|.++-...|..|-..+..|+++..-+. +.+ .++..++. +|+.
T Consensus 200 ~n~~~~~-~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~--~id~------------ 264 (290)
T 3i2w_A 200 ITKYNSV-YIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTIN--NADQ------------ 264 (290)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCTTHHHHHHHHHHHHH--TCCH------------
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH--hcCh------------
Confidence 3445555 99999999999999999999999999999999874232 232 23444444 3331
Q ss_pred ccchhhHHHHHHHhhc
Q 018093 111 ASSGIVRELIQYANEA 126 (361)
Q Consensus 111 ~~S~~l~eL~~yv~~~ 126 (361)
-.||..|+...
T Consensus 265 -----~~Di~~fi~~~ 275 (290)
T 3i2w_A 265 -----QKDLKWWSNNH 275 (290)
T ss_dssp -----HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHc
Confidence 37888898764
No 71
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=21.42 E-value=1.6e+02 Score=24.19 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 018093 32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91 (361)
Q Consensus 32 r~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL 91 (361)
...+...+...|.. +++.+++.|.+...-++..+-..+...+.. ++..++..||..++
T Consensus 191 ~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~-~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 191 RHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHTT-TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCceecHHHHHHHh
Confidence 34455566666764 567788888877655555544444433333 34578888887664
No 72
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.05 E-value=70 Score=29.10 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCCHHHHHHHHH
Q 018093 33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRA----EGNVFDIFQGLE 92 (361)
Q Consensus 33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT----~p~~~DV~~AL~ 92 (361)
..+..++...|+. +++.+++.|.+.....++.+...+...+..++|. .++..||..++.
T Consensus 199 ~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 199 DRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 4445566667775 6788999999887656655555444444444443 788899887766
Done!