BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018097
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 193/341 (56%), Gaps = 9/341 (2%)
Query: 10 IVRVQSLSESGSTDIPDRYVKPPAERPVLPNSRINGDDEK-INIPIINLAGLDGGDENAR 68
+ RV+SL++SG IP Y++P E + + + E +P I+L ++ DE R
Sbjct: 3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62
Query: 69 REILGQISAACREWGFFQVVNHGVRHELMDDARENWRQFFHSPMEVKQAYGNSPKT--YE 126
+ ++ A +WG ++NHG+ +LM+ ++ +FF +E K+ Y N T +
Sbjct: 63 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122
Query: 127 GYGSRLGVEKGAILDWSDYYFLHYRPCSLKDFNKWPATPASCREVIDEYCKELVRLSGRL 186
GYGS+L L+W DY+F P +D + WP TP+ E EY K L L+ ++
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182
Query: 187 MKVLSINLGISEDRLQNAFGG-DNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLP 245
K LS+ LG+ DRL+ GG + + +++N+YPKCPQP+L LG+ +H+D LT +L
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL- 241
Query: 246 DHQVTGLQVRKGDNWITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVAVNSANERVSLA 305
+ V GLQ+ W+T K + +++IGD +++LSN YKS+ HR VN R+S A
Sbjct: 242 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 301
Query: 306 FFYNPKSD-IPIEPVKELVTEESPSLYPPMTFD---EYRLF 342
F P D I ++P+ E+V+ ESP+ +PP TF E++LF
Sbjct: 302 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLF 342
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 230 bits (586), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 193/341 (56%), Gaps = 9/341 (2%)
Query: 10 IVRVQSLSESGSTDIPDRYVKPPAERPVLPNSRINGDDEK-INIPIINLAGLDGGDENAR 68
+ RV+SL++SG IP Y++P E + + + E +P I+L ++ DE R
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 69 REILGQISAACREWGFFQVVNHGVRHELMDDARENWRQFFHSPMEVKQAYGNSPKT--YE 126
+ ++ A +WG ++NHG+ +LM+ ++ +FF +E K+ Y N T +
Sbjct: 64 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 127 GYGSRLGVEKGAILDWSDYYFLHYRPCSLKDFNKWPATPASCREVIDEYCKELVRLSGRL 186
GYGS+L L+W DY+F P +D + WP TP+ E EY K L L+ ++
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 187 MKVLSINLGISEDRLQNAFGG-DNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLP 245
K LS+ LG+ DRL+ GG + + +++N+YPKCPQP+L LG+ +H+D LT +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL- 242
Query: 246 DHQVTGLQVRKGDNWITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVAVNSANERVSLA 305
+ V GLQ+ W+T K + +++IGD +++LSN YKS+ HR VN R+S A
Sbjct: 243 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 306 FFYNPKSD-IPIEPVKELVTEESPSLYPPMTFD---EYRLF 342
F P D I ++P+ E+V+ ESP+ +PP TF E++LF
Sbjct: 303 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLF 343
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 189/341 (55%), Gaps = 9/341 (2%)
Query: 10 IVRVQSLSESGSTDIPDRYVKPPAERPVLPNSRINGDDEK-INIPIINLAGLDGGDENAR 68
+ RV+SL++SG IP Y++P E + + + E +P I+L ++ DE R
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 69 REILGQISAACREWGFFQVVNHGVRHELMDDARENWRQFFHSPMEVKQAYGNSPKT--YE 126
+ ++ A +WG ++NHG+ +L + ++ +FF +E K+ Y N T +
Sbjct: 64 ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 127 GYGSRLGVEKGAILDWSDYYFLHYRPCSLKDFNKWPATPASCREVIDEYCKELVRLSGRL 186
GYGS+L L+W DY+F P +D + WP TP+ E EY K L L+ ++
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 187 MKVLSINLGISEDRLQNAFGG-DNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLLP 245
K LS+ LG+ DRL+ GG + + ++N+YPKCPQP+L LG+ +H+D LT +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFIL- 242
Query: 246 DHQVTGLQVRKGDNWITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVAVNSANERVSLA 305
+ V GLQ+ W+T K + + +IGD +++LSN YKS+ HR VN R+S A
Sbjct: 243 HNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 306 FFYNPKSD-IPIEPVKELVTEESPSLYPPMTFD---EYRLF 342
F P D I ++P+ E V+ ESP+ +PP TF E++LF
Sbjct: 303 VFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLF 343
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 171/316 (54%), Gaps = 19/316 (6%)
Query: 51 NIPIINLAGLDGGDENARREILGQISAACREWGFFQVVNHGVRHELMDDARENWRQFFHS 110
N PII+L ++G + A E I AC WGFF++VNHG+ E+ D + + +
Sbjct: 3 NFPIISLDKVNGVERAATXE---XIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKK 59
Query: 111 PMEVKQAYGNSPKTYEGYGSRLGVEKGAILDWSDYYFLHYRPCSLKDFNKWPATPASCRE 170
E + + K EG + + DW +FL + P S + ++ P RE
Sbjct: 60 CXEQRFKELVASKALEGVQAEV-----TDXDWESTFFLKHLPIS--NISEVPDLDEEYRE 112
Query: 171 VIDEYCKELVRLSGRLMKVLSINLGISEDRLQNAFGGD---NIGACLRVNFYPKCPQPDL 227
V ++ K L +L+ L+ +L NLG+ + L+NAF G N G +V+ YP CP+PDL
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGT--KVSNYPPCPKPDL 170
Query: 228 TLGLSSHSDPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGDQIQVLSNANYK 287
GL +H+D GG+ LL D +V+GLQ+ K WI V P +H+ +VN+GDQ++V++N YK
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYK 230
Query: 288 SVEHRVAVNSANERVSLAFFYNPKSDIPIEPVKELV---TEESPSLYPPMTFDEY-RLFI 343
SV HRV R SLA FYNP SD I P LV EE+ +YP FD+Y +L+
Sbjct: 231 SVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYA 290
Query: 344 RTRGPKGKSQVESMKS 359
+ + + E+ K+
Sbjct: 291 GLKFQAKEPRFEAXKA 306
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 21/282 (7%)
Query: 74 QISAACREWGFFQVVNHGVRHELMDDARENWRQFFHSPMEVKQAYGNSPKTYEGYGSRLG 133
++ A+ +GF + ++ + +D A ++ + FF P+E K+ Y GY G
Sbjct: 25 ELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPFG 83
Query: 134 VEKGAILDWSDYY-FLH--------YRPCSLKDFNKWPATPASCREVIDEYCKELVRLSG 184
VE D D F H +R + N WPA + + + L G
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 185 RLMKVLSINLGISEDRLQNAFGGDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGLTLLL 244
++++ ++ L + D + N + LR+ YP P+ + +H D +TLLL
Sbjct: 144 KVLEAIATYLKLERDFFKPTVQDGN--SVLRLLHYPPIPKDATGVRAGAHGDINTITLLL 201
Query: 245 PDHQVTGLQVRKGD-NWITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVAVNSANE--- 300
+ GL+V D W+ + P ++NIGD ++ L+N S HRV VN E
Sbjct: 202 GAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRV-VNPPPERRG 259
Query: 301 --RVSLAFFYNPKSDIPIEPVKELVTEESPSLYP-PMTFDEY 339
R S FF + SD I+ ++ VT E+P YP +T DE+
Sbjct: 260 VPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEF 301
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 27/298 (9%)
Query: 45 GDDEKINIPIINLAGLDGGDENARREILGQISAACREWGFFQVVNHGVRHELMDDARENW 104
G K N+P I+++ L G D+ A+ + QI AA R+ GFF VNHG+ + + + +
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF 61
Query: 105 RQFFHSPME----VKQAYGNSPKTYEGYGSRLGVEKGAILDWSDYYFLHYRP-------- 152
+P E +AY + G L + ++ Y ++ P
Sbjct: 62 HMSI-TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 153 CSLKDFNKWP--ATPASCREVIDEYCKELVRLSGRLMKVLSINLGISEDRLQNAFGGDNI 210
+ N WP ++ ++Y ++ LS L+K ++ LG E+ F D+
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 211 GACLRVNFYPKC-PQPDLTLGLSS---------HSDPGGLTLLLPDHQVTGLQVRKGDNW 260
A + + YP P P+ + ++ H D +T+L + V LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGY 239
Query: 261 ITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVAVNSANERVSLAFFYNPKSDIPIEP 318
++ +++N G + L+N YK+ HRV +A ER SL FF N D I+P
Sbjct: 240 QDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA-ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 27/298 (9%)
Query: 45 GDDEKINIPIINLAGLDGGDENARREILGQISAACREWGFFQVVNHGVRHELMDDARENW 104
G K N+P I+++ L G D+ A+ + QI AA R+ GFF VNHG+ + + + +
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF 61
Query: 105 RQFFHSPME----VKQAYGNSPKTYEGYGSRLGVEKGAILDWSDYYFLHYRP-------- 152
+P E +AY + G L + ++ Y ++ P
Sbjct: 62 HMSI-TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 153 CSLKDFNKWP--ATPASCREVIDEYCKELVRLSGRLMKVLSINLGISEDRLQNAFGGDNI 210
+ N WP ++ ++Y ++ LS L+K ++ LG E+ F D+
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 211 GACLRVNFYPKC-PQPDLTLGLSS---------HSDPGGLTLLLPDHQVTGLQVRKGDNW 260
A + + YP P P+ + ++ H D +T+L + V LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGY 239
Query: 261 ITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVAVNSANERVSLAFFYNPKSDIPIEP 318
++ +++N G + L+N YK+ HRV +A ER SL FF N D I+P
Sbjct: 240 QDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA-ERQSLPFFVNLGYDSVIDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 33/254 (12%)
Query: 78 ACREWGFFQVVNHGVRHELMDDARENWRQFFHSPMEVKQAYGNSPKTYEGY--GSRLGVE 135
+ RE GF + NH + EL++ W+ FF+S E K + + +T++G+ S
Sbjct: 21 SLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFXFNRETHDGFFPASISETA 78
Query: 136 KG-AILDWSDYYFLHYRPCSLKDFNKWPATPASCREVIDEYCKELVRLSGRLMKVLSINL 194
KG + D +YY H P W P S R I Y ++ L+ L++ +
Sbjct: 79 KGHTVKDIKEYY--HVYP--------WGRIPDSLRANILAYYEKANTLASELLEWIET-- 126
Query: 195 GISEDRLQNAFG-------GDNIGACLRVNFYP--KCPQPDLTLGLSSHSDPGGLTLLLP 245
S D ++ F ++ LR+ YP + + ++H D +T+L P
Sbjct: 127 -YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVL-P 184
Query: 246 DHQVTGLQVRKGD-NWITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRV----AVNSANE 300
GLQV+ D +W+ V I+NIGD +Q S+ + S HRV +
Sbjct: 185 TANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKS 244
Query: 301 RVSLAFFYNPKSDI 314
R+SL F +P +
Sbjct: 245 RISLPLFLHPHPSV 258
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 15 SLSESGSTDIPDRYVKPPAERPVLPNSRINGDDEKINIPIINLAGLDGGDENARREILGQ 74
+ +E GS+ + VK A +L N+R D E +P + L G +AR E++
Sbjct: 145 AFNEPGSSLVSRTRVKTLAMDTILANARFF-DGELTKVPTMALTVGVGTVMDAR-EVMIL 202
Query: 75 ISAACREWGFFQVVNHGVRH 94
I+ A + + ++ + GV H
Sbjct: 203 ITGAHKAFALYKAIEEGVNH 222
>pdb|2AMX|A Chain A, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
pdb|2AMX|B Chain B, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
Length = 376
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 236 DPGGLTLLLPDHQVTGLQVRKGDNWITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVAV 295
D GG + L DH+ VR +TV + A + N+ ++ N + + H + V
Sbjct: 211 DHGGREIDLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINILNVERIGHGIRV 270
Query: 296 NSANERVSLAFFYNPKSDIPIE--PVKELVTEESPSL 330
+ ++E + L K DI +E P+ L+ S+
Sbjct: 271 SESDELIELV----KKKDILLEVCPISNLLLNNVKSM 303
>pdb|3TIX|B Chain B, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|D Chain D, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 458
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 256 KGDNWITVKP------AKHAFIVNIGDQIQVLSNANYKSVEHRVAVNSANERVSLAFFYN 309
K D+WI + P K F+ N D+ +L N + R N A + V+L
Sbjct: 336 KKDSWILILPPSIVDMVKSYFVTNNPDK-SLLEIQNLLNTLQRYLTNPALKNVTLY---- 390
Query: 310 PKSDIPIEPVKELVTEESPSLYPPMTFDEYRLFIRTRGPKGK 351
DI I+ ++ + LY +D+YR F+ K +
Sbjct: 391 QDWDIVIDDSADVSLASTLQLYQKKNYDKYRRFVLIHELKNE 432
>pdb|2XTL|A Chain A, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
pdb|2XTL|B Chain B, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
Length = 452
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 252 LQVRKGDNWITVKPAKHAFIVNIGDQIQVLSNANYKSVEHRVA 294
LQV+ GD W+ V AK + + L NA V RV+
Sbjct: 188 LQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIERVS 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,983,450
Number of Sequences: 62578
Number of extensions: 532687
Number of successful extensions: 1076
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1040
Number of HSP's gapped (non-prelim): 13
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)