BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018098
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/359 (44%), Positives = 216/359 (60%), Gaps = 3/359 (0%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
+ PR F D+ IG E GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K F
Sbjct: 14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+IK FMIQ ESIYG KFEDENF KH+++G+LSMANAG NTNGSQFF
Sbjct: 74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
ITT T HLDGKHVVFG+VIKGMGV + +E+V + P I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192
Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
GDS+PD+P D D ++ + + +K GN +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKAL 301
++ + ++ + L+ N AC A+ N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
+R+ Q + L + D A+ +KA ++ P D I+ EL K+KI ++++EK Y KMF
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 124/173 (71%), Gaps = 2/173 (1%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M+R + F DI+IG + GRI++E+Y+DV+PKTA NFRALCTGE GIG +G PLH+K +
Sbjct: 1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I FMIQ ESIYG KF DENF+ KH G+LSMANAGPNTNGSQF
Sbjct: 60 FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
F+ T +T LDGKHVVFGRV++G+ VV+++E + + P+ D I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
+ RPRCF DI+I + GR++ E+++DV PKT ENFR LCTGEKG G +T PLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRV+K FM+Q ESIYG FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FITT T HLDG HVVFG+VI G VVR IE+ T P A+V I CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
+ RPRCF DI+I + GR++ E+++DV PKT ENFR LCTGEKG G +T PLHYK
Sbjct: 7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRV+K FM+Q ESIYG FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FITT T HLDG HVVFG+VI G VVR IE+ T P A+V I CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 115/173 (66%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
+ RPRCF DI+I + GR++ E+++DV PKT ENFR LCTGEKG G +T PLHYK
Sbjct: 24 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRV+K FM+Q ESIYG FEDE+F +KH +LSMAN G +TNGSQF
Sbjct: 84 FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FITT T HLDG HVVFG+VI G VVR IE+ T P A+V I CGE+
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 113/171 (66%)
Query: 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
R R FLD++I L GRI++E+YND+ P+T NF LCTG G G +G PLHYK FH
Sbjct: 6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 63 RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
RVIK FMIQ ESIYG F+DE F +KH+ ++SMAN GPNTNGSQFFI
Sbjct: 66 RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
TTT HL+ HVVFG+V+ G VV IE++ T + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P+ F DISI + GRI++E+Y D +PKTAENFRALCTGEKG G +G PLHYK
Sbjct: 5 MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKG-RSGKPLHYKSSV 63
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELK---HERKGMLSMANAGPNTNG 117
FHRVI FMIQ ESIYG F DE+F K H G LSMANAGPNTNG
Sbjct: 64 FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 118 SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
SQFFI T T LDGKHVVFGRVI G+ VV+ +E + + + + ++DCGE+
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTR-SRIVVSDCGEV 178
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 109/172 (63%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
P+C DI I E GRI+ ++++D+ PKT +NF LC+GEKG+G TG L YK F
Sbjct: 18 GSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTF 77
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRV+K FMIQ ESIYG F+DENF LKH+R +LSMAN G +TNGSQFF
Sbjct: 78 HRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
ITT HLDG HVVFG VI G V+ IE++ T P ADV + DCG +
Sbjct: 138 ITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + D+ IG E GR+++ ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 66 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + D+ IG E GR+++ ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 66 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 112/170 (65%), Gaps = 3/170 (1%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P F D+SIG + GR+ +E++ DV+PKTAENFR CTGE GVP+ YK FHR
Sbjct: 11 PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF---RKDGVPIGYKGSTFHR 67
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
VIK FMIQ SIY F DENF+L+H G+LSMAN+GP+TNG QFFIT
Sbjct: 68 VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 127
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
++ LDGKHVVFG++I G+ V+R IE+V TG N+ P V I+ CGE+
Sbjct: 128 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 108/170 (63%), Gaps = 2/170 (1%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
P + DISIG GRI +E++ D +P TAENFRALCTGEKG+G +G PL Y F
Sbjct: 18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMG-QSGKPLCYTGSFF 76
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I FMIQ ESIYG KF DENF H+ +LSMANAGPNTNGSQFF
Sbjct: 77 HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
ITT LDGKHVVFG+V++GM VV+SIE + N P V IT G
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + D+ IG E GR+I ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 68
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 69 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DV I DCG+I
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + D+ IG E GR+I ++ +PKT +NF AL TGEKG G YK +FHRV
Sbjct: 7 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 58
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ +SIYG +F DENF+LKH G +SMANAG +TNGSQFFITT
Sbjct: 59 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T+ LDGKHVVFG+V++GM VVR +E T D P+ DV I DCG+I
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YK
Sbjct: 1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
R + F DISI GRII E+++D+ P+T ENFRALCTGEK IG + G LHYK FH
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63 RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
R+I FM Q ESIYG F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61 RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGEI 173
T LDGKHVVFG+VI+GM VVR +E G + V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGEL 170
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 72 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 11/171 (6%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
PR F DI IG GRI++E+ +D++P+TAENFRALCTGE+G G Y FHR
Sbjct: 11 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCFHR 62
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
VI FM Q +SIYG KF+DENF+L+HE G+LSMAN+GPNTNGSQFFI
Sbjct: 63 VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD-VTITDCGEI 173
TT+ LDGKHVVFGRV+ G VV+ +E V G + + V I+ CGE+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESV--GSKSGKVKEPVIISRCGEL 171
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 9 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 60
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 61 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YK F
Sbjct: 2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 53
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQFF
Sbjct: 54 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
I T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YK F
Sbjct: 3 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 54
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQFF
Sbjct: 55 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 114
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
I T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 115 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 165
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
P +LD+ + GR+++E+ DV+PKTAENFRALCTGEKG G YK F
Sbjct: 1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 52
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM Q +SIYG +F DENF LKH G+LSMANAGPNTNGSQFF
Sbjct: 53 HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
I T +T LDGKHVVFG VI+GM VV+ IE + + ITDCG++
Sbjct: 113 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 163
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+L+MANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FH++I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 109/171 (63%), Gaps = 5/171 (2%)
Query: 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
R + F DISI GRII E+++D+ P+T ENFRALCTGEK IG + G LHYK FH
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63 RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
R+I FM Q ESIYG F DENF +KH++ G+LSMANAGPNTN SQF I
Sbjct: 61 RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGE 172
T LDGKHVVFG+VI+GM VVR +E G + V ITDCGE
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGE 169
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDG HVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 105/165 (63%), Gaps = 9/165 (5%)
Query: 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIK 66
F DI+ G I ++++DV+PKTA NFRALCTGEKG G Y FHRVI
Sbjct: 5 FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVIP 56
Query: 67 GFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
FM+Q +SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFITT
Sbjct: 57 DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
TS LDGKHVVFG VI GM VV++IE +G P + + I CG
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGK-PRSRIEIAKCG 160
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK
Sbjct: 1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHR+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQF
Sbjct: 53 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
FI T +T LDG HVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK FHR
Sbjct: 4 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 56 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 109/169 (64%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ F D+ IG + GRI++ ++ +V+PKT ENF AL TGEKG G YK FHRV
Sbjct: 9 KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRV 60
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ SIYG F DENF+LKH G +SMANAGP+TNGSQFFIT
Sbjct: 61 IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T+ + LDGKHVVFG+V+ GM VV SIE T +D P+ D TI + G+I
Sbjct: 121 TKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG V +GM +V ++E + N +TI DCG++
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 55 IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +GM +V +++ + N +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ F D+ IG + GRI++ ++ V+PKT ENF AL TGEKG G YK +FHRV
Sbjct: 17 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRV 68
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
IK FMIQ SIYG F DENF+LKH G +SMANAGP+TNGSQFFIT
Sbjct: 69 IKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T+ + LDGKHVVFG+VI GM VV SIE T +D P+ + +I + G+I
Sbjct: 129 TKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 107/170 (62%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK FHR
Sbjct: 8 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 59
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GFM Q +SIYG KFEDENF LKH G+LSMANAGPNTNGSQFFI
Sbjct: 60 IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDG HVVFG+V +GM +V ++E + N +TI DCG++
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
A F +ISI + EGRI+ ++Y++ +PKTA+NFR L TG+ G G YK F
Sbjct: 1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVI FM+Q +SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53 HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
ITT TS LDGKHVVFG VI+G+ +VR +E + A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 9/168 (5%)
Query: 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVI 65
F +ISI + EGRI+ ++Y++ +PKTA+NFR L TG+ G G YK FHRVI
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 66 KGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTT 125
FM+Q +SIYG KF DENF++KH + G+LSMANAG NTNGSQFFITT
Sbjct: 58 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
TS LDGKHVVFG VI+G+ +VR +E + A + ITDCG +
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 164
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 107/171 (62%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
+ P+ ++DI IG + GRI + + +DV+P TAENFR LCT EKG G +K F
Sbjct: 10 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I FM Q +SIYG KF+DENF LKH G+LSMAN+GPNTNGSQFF
Sbjct: 62 HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
+T +T LDGKHVVFG V +G+ V+R IE + D P V I DCGE
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 171
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 107/171 (62%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
+ P+ ++DI IG + GRI + + +DV+P TAENFR LCT EKG G +K F
Sbjct: 2 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 53
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I FM Q +SIYG KF+DENF LKH G+LSMAN+GPNTNGSQFF
Sbjct: 54 HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
+T +T LDGKHVVFG V +G+ V+R IE + D P V I DCGE
Sbjct: 114 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 163
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 9/169 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + DI+IG E GR+++ ++ + +PKT ENF+ L +GE G G YK FHRV
Sbjct: 7 KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRV 58
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I+ FMIQ +SIYG +F+DEN ++KH G +SMANAGPN+NGSQFF+TT
Sbjct: 59 IRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTT 117
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T LDG+HVVFG+V++GM VV+ +E+ TG ND P V I DCG +
Sbjct: 118 APTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P F DI++ E GR+ E++ D +PKTAENFRAL TGEKG G YK FHR
Sbjct: 3 PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
+I GF Q +SIYG KFEDENF LKH G+LS ANAGPNTNGSQFFI
Sbjct: 55 IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T +T LDGKHVVFG+V +G +V + E + N +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + D+ + GR++ ++YND++PKTAENFRALCTGEKG G Y FHRV
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRV 54
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I FM+Q +SIYG KF DENF+ H+R G+LSMANAGPNTNGSQFFITT
Sbjct: 55 IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
LDGKHVVFG V+ G +V+ +E + + + A + + GE+
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
+ P F+DI++G G+ E++ +++PKT+ENFR CTGE + +P+ YK F
Sbjct: 58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIF 114
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HRVIK FMIQ SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174
Query: 122 ITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHV-MTGDNDCPIADVTITDCGEI 173
ITT + LDGK+VVFGR+I + +++ IE+V +T P + + +CGE+
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 103/171 (60%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
+ P+ + DI IG + GRI + +DV+P TAENFR LCT EKG G +K F
Sbjct: 11 SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSSF 62
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I F Q +SIYG KF+DENF LKH G+LS AN+GPNTNGSQFF
Sbjct: 63 HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
+T +T LDGKHVVFG V +G+ V+R IE + D P V I DCGE
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 172
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 99/169 (58%), Gaps = 9/169 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + D+ I E GRI + ++ P T ENFR LCTGE G G YK FHRV
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I+ FMIQ +SIYG KF DEN +KH G LSMANAGPNTNGSQFFITT
Sbjct: 65 IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T LDG+HVVFG+V+ GM VV IE T +D P+ V I GE+
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
+ + D+ I E GRI + ++ P T ENFR LCTGE G G YK FHRV
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I+ FMIQ +SIYG KF DEN +KH G LSMANAGPNTNGSQFFITT
Sbjct: 65 IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
T LDG HVVFG+V+ GM VV IE T +D P+ V I GE+
Sbjct: 124 APTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
M P F D+ E GRI +E++++++P+TAENFRALCTGEKG G +K
Sbjct: 4 MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSI 55
Query: 61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
FHRVI F+ Q +SIYG KFEDENF++KH G+LSMAN G NTN SQF
Sbjct: 56 FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
IT + HLD KHVVFG V GM V+ IE + +TIT+CG+I
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV-CRRITITECGQI 167
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
R + D+ IG + GRI++ ++ +PKTA NF L KG G Y +FHRV
Sbjct: 8 RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 65 IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
I FMIQ SIYG KF DENF+LKH G LSMANAG +TNGSQFFITT
Sbjct: 60 IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
+T LDG+HVVFG++++GM VVR IE D P DV I G I
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
A + D+ E GRI++++ +D++PKTA+NFR LC KG G YK F
Sbjct: 26 ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTF 77
Query: 62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
HR+I GFM+Q SIYG KF DENFELKH ++G+LSMAN G +TNGSQFF
Sbjct: 78 HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCG 171
IT +T LD KHVVFG V++GM VV I + + I DCG
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
GRI+ +++ +PKTA+NFR LC G G Y+ FHR+I FMIQ
Sbjct: 22 GRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFTR 73
Query: 78 XXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVF 137
SIYG KF DENF KH++KG+LSMANAGPNTNGSQFFITT TS LDGKHVVF
Sbjct: 74 GNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 138 GRVI--KGMGVVRSIEHVMTGDNDCPIADVT---ITDCGEI 173
G V K VV+ IE + G + + T I +CGE+
Sbjct: 134 GEVADEKSYSVVKEIEAL--GSSSGSVRSNTRPKIVNCGEL 172
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P +L+ S+G+ I++E+Y PKT +NF L +G +Y +FHR
Sbjct: 12 PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IK FMIQ SIYG +FEDE + +LK G+L+MANAGP+TNGSQFF+
Sbjct: 56 IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
T T LDGKH +FGRV +G+G+V + V T D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P +L+ S+G+ I++E+Y PKT +NF L +G +Y +FHR
Sbjct: 12 PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IK FMIQ SIYG +FEDE + +LK G+L+MANAGP+TNGSQFF+
Sbjct: 56 IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
T T LDGKH +FGRV +G+G+V + V T D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P +L+ S+G+ I++E+Y PKT +NF L +G +Y +FHR
Sbjct: 12 PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IK FMIQ SIYG +FEDE + +LK G+L+MANAGP+TNGSQFF+
Sbjct: 56 IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
T T LDGKH +FGRV +G+G+V + V T D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 87/157 (55%), Gaps = 19/157 (12%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
G I +E++ + PKT ENF ALC +Y FHR IKGFM+Q
Sbjct: 10 GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 78 XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
SI+G KFEDE E LKH +G++SMAN GPNTNGSQFFIT + HLD K+ V
Sbjct: 59 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
FG+VI G+ + +E + + ND I D+TI
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 87/157 (55%), Gaps = 19/157 (12%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
G I +E++ + PKT ENF ALC +Y FHR IKGFM+Q
Sbjct: 16 GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 78 XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
SI+G KFEDE E LKH +G++SMAN GPNTNGSQFFIT + HLD K+ V
Sbjct: 65 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
FG+VI G+ + +E + + ND I D+TI
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 10 ISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFM 69
I+I L G VE+Y PKT NF LC E G NT FHRVI F+
Sbjct: 41 ITIYTNL-GDFEVELYWYHSPKTCLNFYTLC--EMGFYDNT---------IFHRVIPNFV 88
Query: 70 IQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTS 128
IQ +SIYG FEDE N ELKH G+LSM+N GPNTN SQFFIT
Sbjct: 89 IQGGDPTGTGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLP 147
Query: 129 HLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
HLDGKH +F RV K M + +I V T + PI D+ I
Sbjct: 148 HLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKI 186
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P+ D +I G I +++ PKT ENF C + +Y FHR
Sbjct: 17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN--------GYYNGHTFHR 65
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
+IKGFMIQ ESI+G +FEDE + L+H+R LSMANAG NTNGSQFFI
Sbjct: 66 IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITD 169
T T LD KH VFGRV KGM VV+ I +V + D P DV+I +
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
G I + ++ KT +NF + +Y FHRVIK FM+Q
Sbjct: 15 GDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPSG 63
Query: 78 XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
ESI+G +FEDE F+ L H + M+SMAN GPNTNGSQFFITT LD KH V
Sbjct: 64 DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
FG+V +G +V IE V T D P+ D+ I +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
G + E++ PK +NF AL +YK FH+ IKGF+IQ
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPTG 74
Query: 78 XXXXXXESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDG 132
ESIYG F+DE + ELK++R+G+LSMA+ G PNTNGSQFFIT + L+G
Sbjct: 75 TGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 133 KHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
++V+FG++I G + ++E+ + + PI ++ I D
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 13/138 (9%)
Query: 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX 76
+G + +E++ D+ PKT ENF LC +Y FHR I+ F+IQ
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT 76
Query: 77 XXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHV 135
ES +G F+DE L H +G+LSMAN+GPN+N SQFFIT ++LD KH
Sbjct: 77 GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 136 VFGRVIKGMGVVRSIEHV 153
+FGRV+ G V+ ++E+V
Sbjct: 136 IFGRVVGGFDVLTAMENV 153
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPN--TGVP--LHYKVIRFHRVIKGFMIQXX 73
G I + ++ + PKT NF L G K +G P Y FHRVI+GFMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 74 XXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
KF DE + EL+ ++ +L+MANAGP TNGSQFFIT +T HL+
Sbjct: 93 DPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI 167
+H +FG VI + VV +I T ND P V I
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
G I +E+++ PK NF LC + +Y FHRV+ GF++Q
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 78 XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
ESIYG F+DE + L+ R+G+++MANAG + NGSQFF T R L+ KH +
Sbjct: 83 TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 137 FGRV 140
FG+V
Sbjct: 142 FGKV 145
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXX 73
V +G + +E++ D+ P+ ++F LC + ++ FHR I+ FMIQ
Sbjct: 12 VTTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGG 60
Query: 74 XXXXXXXXXXESIY-----------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
+ + G FEDE + L H+ G+LSMAN G ++N S+FF
Sbjct: 61 RAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFF 120
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMT 155
IT HL+ KH +FGRV+ G+ V+R E + T
Sbjct: 121 ITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
SW MN+ + +K G ++K+ YK AL +Y+K + +L+ + K+ +L
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
R N + C A+ +N K LFR+G+A++A+ND + A
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
F+K L+L PN+ K +LAV +++I + +EKK Y MF+
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
SW N+ + +K G ++K+ YK AL +Y+K + +L+ + K+ +L
Sbjct: 135 SWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
R N + C A+ +N K L R+G+A++A+ND + A
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
F+K L+L PN+ K +LAV +++I + +EKK Y MF+
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
+ +V++++ GNE + ++DYK A+ YR AL LD +E E + L + ++
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
N S C + ++ + N KALFR+ +A +A +D A E + L+
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 329 PNDGG-IKKELAVAKKKIHERREQEKKQYRKMFQ 361
P + +E+ + ++ E++ + Y KMFQ
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
SW M+ + +K G ++K Y A+ +Y K + +L++ + G+ E +S +
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
F N + C + A+ N K L+R+G+A + +N+ ++A
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
FEK L++ P + + ++++ +KK E E++++ Y MF+
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
N+ ++ K GN +YK+ DY+ A+ Y+KAL +D +S+ + N
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----------LDPNNASA--------WYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
+ A+ +N KA +R+G AY D A+E ++KAL+L+P
Sbjct: 49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
N+ K+ L AK+K
Sbjct: 109 NNAKAKQNLGNAKQK 123
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
SW M+ + +K G ++K Y A+ +Y K + +L++ + G+ E +S +
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
F N + C + A+ N K L+R+G+A + +N+ ++A
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
FEK L++ P + + ++ + +KK E E++++ Y MF+
Sbjct: 373 DFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 414
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL--DICWEKEGIDEGKSSSLRKTKSQI 266
+ A D K+ GN +K++ + A+++Y A+ Y+ D ++ G + + ++ K+
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV---KNPC 232
Query: 267 FTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
N +AC + + + N KALFR+G+A L +D+A + F KA K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 327 LEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
P+D I++EL ++ +++K+ Y+ +F+
Sbjct: 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 41/171 (23%)
Query: 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX 76
G I ++++ D P+TA NF HY FHRVI GFMIQ
Sbjct: 8 HGTITLKLFADKAPETAANFEQYVKDG-----------HYDGTIFHRVIDGFMIQGGGFE 56
Query: 77 XXXXXXXESIYGLKFEDENFELKHE-------RKGMLSMA-NAGPNTNGSQFFITTTRTS 128
G+K + +K+E +K ++MA P++ +QFFI +
Sbjct: 57 P----------GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNA 106
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
LD + VFG V++G VV I+ V TG D P+ DV I
Sbjct: 107 FLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX- 76
G I+++ ++D P+T +NF C +G NT FHRVI GFMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGFYNNT---------IFHRVINGFMIQGGGFEP 57
Query: 77 -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
E I + N LK+ R G L+MA P++ +QFFI L+
Sbjct: 58 GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
+ VF V+ GM VV I+ V TG D P DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
N+ ++ GN +YK+ DY A+ Y+KAL L ++ + N
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
+ A+ +N +A + G AY D D A+E ++KAL+L+P
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
N+ K+ L AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
AM G+ + +A + G AY D D A+E ++KAL+L+PN+
Sbjct: 2 AMDPGN-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
N+ ++ GN +YK+ DY A+ Y+KAL L ++ + N
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LYPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
+ A+ +N +A + G AY D D A+E ++KAL+L P
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108
Query: 330 NDGGIKKELAVAKKK 344
N+ K+ L AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
D ++ +A + G AY D D A+E ++KAL+L PN+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 42
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
L+ PN W N GN +YK+ DY A+ Y+KAL
Sbjct: 70 LELYPNNAEAWYN-------LGNAYYKQGDYDEAIEYYQKALE 105
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
AV I GN Y++ K A KY A+ L KE + L + + + N
Sbjct: 13 AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 72
Query: 271 SACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
C + DDNVKA F++G+A+ A+ + A F K L+L+P
Sbjct: 73 CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 132
Query: 331 DGG-IKKELAVAKKKIHERREQEKKQYRKMF 360
+ +EL + +I ++ E++K ++R +F
Sbjct: 133 LAPVVSRELQALEARIRQKDEEDKARFRGIF 163
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX- 76
G I+++ ++D P+T +NF C +G NT FHRVI GFMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGFYNNT---------IFHRVINGFMIQGGGFEP 57
Query: 77 -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
E I + N LK+ R G L+MA P++ +QFFI L+
Sbjct: 58 GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
+ VF V+ GM V I+ V TG D P DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
G + VE++ P NF LC + +Y FHRV+K F++Q
Sbjct: 31 GDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPTG 79
Query: 78 XXXXXXESIY-GLKFEDENF-ELKHERKGMLSMANAGPN--------------TNGSQFF 121
++ + G F+ E LK +G++ +AN G + TNG+QFF
Sbjct: 80 TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 122 ITTTRTSHLDGKHVVFGRV 140
IT R L+ + +FG+V
Sbjct: 140 ITLARADVLNNAYTLFGKV 158
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P L S G I +E+ P + +NF N+G Y FHR
Sbjct: 5 PHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHR 48
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFI 122
VI GFMIQ + +K E +N L++ R G ++MA A ++ SQFFI
Sbjct: 49 VIPGFMIQGGGFTEQMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFI 105
Query: 123 TTTRTSHLD-GK----HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEI 173
+ LD G+ + VFG+V+KGM V I V T D + P V I +
Sbjct: 106 NVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 165
Query: 174 P 174
P
Sbjct: 166 P 166
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
P L S G I +E+ P + +NF N+G Y FHR
Sbjct: 5 PHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHR 48
Query: 64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFI 122
VI GFMIQ + +K E +N L++ R G ++MA A ++ SQFFI
Sbjct: 49 VIPGFMIQGGGFTEQMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFI 105
Query: 123 TTTRTSHLD-GK----HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEI 173
+ LD G+ + VFG+V+KGM V I V T D + P V I +
Sbjct: 106 NVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165
Query: 174 P 174
P
Sbjct: 166 P 166
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGE------KGIGP---NTGVPL 54
PR ++DI + E+ GR+ ++++ D P ENF L G+ G G N +
Sbjct: 15 PRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74
Query: 55 HYKVIRFHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-------NFELKHERKGMLS 107
Y+ +FH V+ I ++Y DE ++ HE KG+LS
Sbjct: 75 TYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIPPVFGDYFYPHESKGLLS 130
Query: 108 MA----NAGPNTNGSQFFITT--TRTSH----LDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
+ +G S F IT R S+ LD VV G+V G+ V+ I ++
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 158 NDCPIADVTITDCG 171
+I CG
Sbjct: 191 AGRKYPTFSIGKCG 204
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 70/171 (40%), Gaps = 41/171 (23%)
Query: 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX 76
G I +E+ PKT ENF L +KG HY FHRVI GFMIQ
Sbjct: 12 HGVIKLELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFE 60
Query: 77 XXXXXXXESIYGLKFEDENFELKHERKGML-------SMANAG-PNTNGSQFFITTTRTS 128
GLK + + + +E L +MA P++ +QFFI
Sbjct: 61 P----------GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE 110
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
L+ + VFG+V++G +V I+ V TG D P DV I
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACX 274
IK GNE +KK + A+ KY++AL + +E D+ + + N + C
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 275 XXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
++ +NVKAL++ G A M ++ A E+ KA L PN+ I
Sbjct: 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 335 KKELAVAKKKIHERREQEKKQYRKMF 360
+ + K+ E R+++K + MF
Sbjct: 159 RNSYELCVNKLKEARKKDKLTFGGMF 184
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK 261
P + ++V+ ++ GNE +K DY AL Y +AL G+D + +
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQAL----------GLD-----ATPQ 62
Query: 262 TKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
++ + N +AC A+ +VKAL+R+ QA L +D AV
Sbjct: 63 DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122
Query: 322 EKALKLEPND 331
++ + LEP +
Sbjct: 123 QRCVSLEPKN 132
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
+N +A + G AY D D A+E ++KAL+L+PN+ K+ L AK+K
Sbjct: 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
Score = 34.3 bits (77), Expect = 0.099, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
D ++ +A + G AY D D A+E ++KAL+L+PN+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 43
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
L+ PN W N GN +YK+ DY A+ Y+KAL
Sbjct: 36 LELDPNNAEAWYN-------LGNAYYKQGDYDEAIEYYQKAL 70
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
AV I GN Y++ K A KY A+ L KE + L + + + N
Sbjct: 7 AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 66
Query: 271 SACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
C + DDNVKA F++G+A+ A+ + A F K L+L+P
Sbjct: 67 CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 126
Query: 331 DGG-IKKELAVAKKKIHE 347
+ +EL + +I +
Sbjct: 127 LAPVVSRELQALEARIRQ 144
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 18/136 (13%)
Query: 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS 271
+ +K GNE K ++++ A+ Y GK+ L + F N +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFY------------------GKAIELNPANAVYFCNRA 53
Query: 272 ACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
A E A+ KA R G A +LN AV ++KAL+L+P++
Sbjct: 54 AAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
Query: 332 GGIKKELAVAKKKIHE 347
K L +A+ K+ E
Sbjct: 114 ETYKSNLKIAELKLRE 129
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 218 FGNEHYKKQDYKMALRKYRKALRY----------LDICWEKEG-IDEG-----KSSSLRK 261
GN +YK+ DY A+ Y+KAL L + K+G DE K+ L
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 262 TKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
++ + N + A+ + +A + G AY D D A+E +
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 322 EKALKLEP 329
+KAL+L+P
Sbjct: 127 QKALELDP 134
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
+A + G AY D D A+E ++KAL+L+P
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 32
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI-FTNSSACXXXX 277
GNE++KK DY A+R Y +A++ R ++ I ++N +AC
Sbjct: 20 GNEYFKKGDYPTAMRHYNEAVK-------------------RDPENAILYSNRAACLTKL 60
Query: 278 XXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
+ +R +K R+ +A+ + A ++E AL+++P++
Sbjct: 61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
N FR G A L D A++SF+ AL L PN+G + + +A + +++ R E+ +
Sbjct: 109 NFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG-RHEEALPHF 167
Query: 357 RK 358
+K
Sbjct: 168 KK 169
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
N FR G A L D A++SF+ AL L PN+G + + +A + +++ R E+ +
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG-RHEEALPHF 167
Query: 357 RK 358
+K
Sbjct: 168 KK 169
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
N FR G A L D A++SF+ AL L PN+G + + +A + +++ R E+ +
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG-RHEEALPHF 167
Query: 357 RK 358
+K
Sbjct: 168 KK 169
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350
N FR G A L D A++SF+ AL L PN+G + + +A + +++ E
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEE 162
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
+ + +K N+++K +DY+ A++ Y +A+ L + + +
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYG 44
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
N S A+ +K +R+ + MAL AA+ +E +K++
Sbjct: 45 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 104
Query: 329 PNDGGIKKELA----VAKKKIHER 348
P+D K + + K+K ER
Sbjct: 105 PHDKDAKMKYQECNKIVKQKAFER 128
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
DNV AL + +AY+ D A++ +E A + ND I++ L A++ + ++ +K+
Sbjct: 327 DNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLL---KQSQKRD 383
Query: 356 YRKMF 360
Y K+
Sbjct: 384 YYKIL 388
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSAC 273
+K GNE ++K DY A++ Y +A++ R K +++++N +AC
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIK-------------------RNPKDAKLYSNRAAC 59
Query: 274 XXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
E ++ +K R+ A A+ D A++ ++KAL L+
Sbjct: 60 YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
D +K GN +++Y A+ Y +AL S+ +N +A
Sbjct: 12 DKLKSEGNAAMARKEYSKAIDLYTQAL------------------SIAPANPIYLSNRAA 53
Query: 273 CXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
E A KA R G A + D A E++EK ++ E N G
Sbjct: 54 AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113
Query: 333 --GIKKELAVAKKKIHE 347
+K+ L K+KI E
Sbjct: 114 SDAMKRGLETTKRKIEE 130
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
DNV AL + +AY+ D A++ +E A + ND I++ L A++ + ++ +K+
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL---KQSQKRD 383
Query: 356 YRKMF 360
Y K+
Sbjct: 384 YYKIL 388
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
+ +A + G AY D D A+E ++KAL+L+P
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 34
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
+ +A + G AY D D A+E ++KAL+L+P
Sbjct: 36 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
L+ P W N GN +YK+ DY A+ Y+KAL
Sbjct: 30 LELDPRSAEAWYN-------LGNAYYKQGDYDEAIEYYQKAL 64
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
+ + +K N+++K +DY+ A++ Y +A+ L + + +
Sbjct: 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAI------------------ELNPSNAIYYG 51
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
N S A+ +K +R+ + MAL AA+ +E +K++
Sbjct: 52 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111
Query: 329 PNDGGIKKELA----VAKKKIHER 348
P+D K + + K+K ER
Sbjct: 112 PHDKDAKMKYQECNKIVKQKAFER 135
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343
DNV AL + +AY+ D A++ +E A + ND I++ L A++
Sbjct: 304 DNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS 271
+ +K N+++K +DY+ A++ Y +A+ L + + + N S
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAI------------------ELNPSNAIYYGNRS 62
Query: 272 ACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
A+ +K +R+ + MAL AA+ +E +K++P+D
Sbjct: 63 LAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 122
Query: 332 GGIK 335
K
Sbjct: 123 KDAK 126
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 267 FTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
+TN + C A+ +VKA F GQ + + D A+ + ++A
Sbjct: 41 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100
Query: 327 LEPND-----GGIKKELAVAKKK----IHERR 349
L I L +AKKK I ERR
Sbjct: 101 LAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 132
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 218 FGNEHYKKQDYKMALRKYRKALR---------------YLDICWEKEGIDEGKS-SSLRK 261
G++ K D+ A+R Y+K L+ Y+DI + I+ K L
Sbjct: 11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70
Query: 262 TKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
T ++ + + + A+ A ++ G Y ++ + D A+E++
Sbjct: 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAY 130
Query: 322 EKALKLEP 329
EK + ++P
Sbjct: 131 EKTISIKP 138
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 267 FTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
+TN + C A+ +VKA F GQ + + D A+ + ++A
Sbjct: 46 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105
Query: 327 LEPND-----GGIKKELAVAKKK----IHERR 349
L I L +AKKK I ERR
Sbjct: 106 LAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,409,752
Number of Sequences: 62578
Number of extensions: 432735
Number of successful extensions: 1677
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1427
Number of HSP's gapped (non-prelim): 136
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)