Query 018098
Match_columns 361
No_of_seqs 329 out of 3355
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 3.7E-86 8.1E-91 586.0 25.6 358 3-361 8-372 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.7E-57 1E-61 366.6 15.7 167 4-178 40-207 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 8.3E-56 1.8E-60 336.5 11.9 167 3-172 10-176 (177)
4 KOG0111 Cyclophilin-type pepti 100.0 1.1E-50 2.4E-55 334.1 9.5 164 1-173 134-297 (298)
5 KOG0881 Cyclophilin type pepti 100.0 1.2E-49 2.7E-54 299.2 8.0 153 3-172 9-162 (164)
6 PTZ00221 cyclophilin; Provisio 100.0 9.3E-48 2E-52 335.0 20.0 175 2-180 51-226 (249)
7 cd01926 cyclophilin_ABH_like c 100.0 8E-47 1.7E-51 315.9 18.8 164 4-171 1-164 (164)
8 PLN03149 peptidyl-prolyl isome 100.0 5E-47 1.1E-51 321.6 17.4 170 1-173 16-186 (186)
9 PTZ00060 cyclophilin; Provisio 100.0 2.1E-46 4.6E-51 317.6 18.8 170 1-173 13-182 (183)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 7.9E-46 1.7E-50 300.6 13.7 144 14-171 5-155 (158)
11 cd01923 cyclophilin_RING cyclo 100.0 5.3E-43 1.1E-47 290.9 16.8 152 15-178 6-158 (159)
12 cd01928 Cyclophilin_PPIL3_like 100.0 4.2E-43 9.1E-48 289.3 16.1 148 6-170 3-151 (153)
13 cd01927 cyclophilin_WD40 cyclo 100.0 5.6E-43 1.2E-47 287.2 15.7 143 15-169 4-147 (148)
14 KOG0865 Cyclophilin type pepti 100.0 2.5E-43 5.3E-48 288.2 10.3 164 1-173 1-167 (167)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 1.9E-42 4.2E-47 283.1 15.3 141 15-168 4-145 (146)
16 cd01921 cyclophilin_RRM cyclop 100.0 2.9E-42 6.2E-47 288.8 16.1 153 15-179 4-165 (166)
17 KOG0883 Cyclophilin type, U bo 100.0 4.2E-43 9E-48 311.2 9.9 150 15-176 284-434 (518)
18 KOG0884 Similar to cyclophilin 100.0 6.5E-42 1.4E-46 256.0 10.8 154 6-176 3-158 (161)
19 KOG0882 Cyclophilin-related pe 100.0 5.6E-42 1.2E-46 309.9 10.3 150 11-172 407-557 (558)
20 cd01925 cyclophilin_CeCYP16-li 100.0 1.4E-40 3.1E-45 279.4 16.2 159 5-180 7-167 (171)
21 PRK10903 peptidyl-prolyl cis-t 100.0 1.1E-39 2.4E-44 277.3 16.3 152 3-173 28-189 (190)
22 PRK10791 peptidyl-prolyl cis-t 100.0 8.7E-39 1.9E-43 266.0 15.8 144 15-172 6-162 (164)
23 cd01920 cyclophilin_EcCYP_like 100.0 4.3E-38 9.2E-43 260.3 15.0 141 15-169 4-154 (155)
24 cd01924 cyclophilin_TLP40_like 100.0 5.3E-36 1.2E-40 251.9 13.7 126 15-152 4-164 (176)
25 cd00317 cyclophilin cyclophili 100.0 1.2E-35 2.5E-40 245.1 15.5 141 15-168 4-145 (146)
26 KOG0885 Peptidyl-prolyl cis-tr 100.0 3.3E-36 7.1E-41 266.4 9.9 160 5-182 14-176 (439)
27 PF00160 Pro_isomerase: Cyclop 100.0 3.1E-35 6.8E-40 245.1 13.9 151 7-172 1-155 (155)
28 KOG0415 Predicted peptidyl pro 100.0 1.8E-34 4E-39 253.4 12.3 158 6-180 3-169 (479)
29 KOG0543 FKBP-type peptidyl-pro 99.9 4.4E-25 9.6E-30 201.0 18.2 159 200-361 196-354 (397)
30 KOG0553 TPR repeat-containing 99.9 4E-22 8.6E-27 175.0 11.1 125 207-349 76-200 (304)
31 KOG0545 Aryl-hydrocarbon recep 99.9 5.3E-21 1.1E-25 162.6 15.8 161 201-361 167-328 (329)
32 KOG4234 TPR repeat-containing 99.8 8.3E-19 1.8E-23 145.1 13.9 136 205-353 88-223 (271)
33 KOG0548 Molecular co-chaperone 99.7 8.3E-17 1.8E-21 150.9 11.1 117 211-345 357-473 (539)
34 KOG4648 Uncharacterized conser 99.7 6.3E-17 1.4E-21 144.0 7.8 121 205-343 90-210 (536)
35 KOG0547 Translocase of outer m 99.7 8.1E-16 1.8E-20 142.6 12.1 128 202-348 105-234 (606)
36 PRK15359 type III secretion sy 99.7 2.1E-15 4.7E-20 123.7 13.1 117 213-347 25-141 (144)
37 PLN03088 SGT1, suppressor of 99.6 2.3E-15 4.9E-20 141.9 13.4 118 213-348 3-120 (356)
38 KOG0550 Molecular chaperone (D 99.6 4.2E-15 9E-20 135.4 9.9 134 204-352 241-374 (486)
39 KOG0548 Molecular co-chaperone 99.6 4.9E-15 1.1E-19 139.1 9.4 113 212-342 2-114 (539)
40 KOG0551 Hsp90 co-chaperone CNS 99.6 3E-14 6.6E-19 126.6 11.5 107 211-331 80-186 (390)
41 PRK15363 pathogenicity island 99.6 1.2E-13 2.7E-18 112.1 14.0 117 211-345 34-150 (157)
42 TIGR02552 LcrH_SycD type III s 99.5 2.1E-13 4.6E-18 110.5 12.6 118 211-346 16-133 (135)
43 KOG4626 O-linked N-acetylgluco 99.5 8.1E-14 1.8E-18 132.6 8.4 125 211-353 251-375 (966)
44 TIGR00990 3a0801s09 mitochondr 99.5 8.6E-13 1.9E-17 133.8 16.1 113 201-332 116-228 (615)
45 PRK11189 lipoprotein NlpI; Pro 99.5 9.5E-13 2.1E-17 121.3 13.4 105 211-333 63-167 (296)
46 KOG4626 O-linked N-acetylgluco 99.4 4.7E-13 1E-17 127.5 10.6 86 259-344 417-502 (966)
47 KOG0376 Serine-threonine phosp 99.4 1.7E-13 3.7E-18 127.9 6.0 121 211-349 3-123 (476)
48 PRK10370 formate-dependent nit 99.4 2.6E-12 5.7E-17 111.1 11.7 112 209-338 70-184 (198)
49 TIGR00990 3a0801s09 mitochondr 99.4 6.1E-12 1.3E-16 127.6 13.8 119 211-347 330-448 (615)
50 KOG4642 Chaperone-dependent E3 99.4 1.7E-12 3.8E-17 110.6 8.0 116 211-344 9-129 (284)
51 PF13414 TPR_11: TPR repeat; P 99.3 3.2E-12 6.9E-17 90.9 6.8 66 264-329 3-69 (69)
52 KOG1155 Anaphase-promoting com 99.3 6.6E-11 1.4E-15 109.7 14.5 123 212-352 364-486 (559)
53 TIGR02795 tol_pal_ybgF tol-pal 99.3 3.4E-11 7.3E-16 94.8 11.1 112 212-338 2-116 (119)
54 PRK15359 type III secretion sy 99.3 3.7E-11 8E-16 98.6 11.6 102 232-354 13-114 (144)
55 KOG1126 DNA-binding cell divis 99.3 4.9E-12 1.1E-16 121.8 6.8 143 211-353 420-578 (638)
56 KOG1155 Anaphase-promoting com 99.3 3.5E-11 7.6E-16 111.5 12.0 122 215-354 333-454 (559)
57 PRK09782 bacteriophage N4 rece 99.3 6.1E-11 1.3E-15 124.2 14.4 124 212-353 609-732 (987)
58 KOG0624 dsRNA-activated protei 99.3 6.4E-11 1.4E-15 106.1 12.0 116 211-344 37-155 (504)
59 KOG1126 DNA-binding cell divis 99.2 4.1E-11 8.9E-16 115.5 10.9 127 211-355 488-614 (638)
60 PF13414 TPR_11: TPR repeat; P 99.2 1.9E-11 4.2E-16 86.9 6.2 67 211-295 2-69 (69)
61 PRK15331 chaperone protein Sic 99.2 9.2E-11 2E-15 95.9 10.9 118 211-347 36-153 (165)
62 KOG1308 Hsp70-interacting prot 99.2 9.9E-12 2.1E-16 111.4 5.6 157 159-348 75-231 (377)
63 PRK12370 invasion protein regu 99.2 9.4E-11 2E-15 117.3 13.3 74 259-332 333-406 (553)
64 PRK15179 Vi polysaccharide bio 99.2 1.1E-10 2.4E-15 118.1 13.2 125 211-353 85-209 (694)
65 PRK02603 photosystem I assembl 99.2 1.5E-10 3.3E-15 98.0 11.9 109 208-331 31-153 (172)
66 COG3063 PilF Tfp pilus assembl 99.2 1.8E-10 4E-15 98.2 12.1 118 210-345 33-186 (250)
67 KOG1125 TPR repeat-containing 99.2 3.3E-11 7.1E-16 114.5 8.3 120 211-348 429-558 (579)
68 PRK10370 formate-dependent nit 99.2 2E-10 4.4E-15 99.3 12.4 112 225-354 52-166 (198)
69 KOG0547 Translocase of outer m 99.2 1.4E-10 3.1E-15 108.2 11.7 124 210-351 324-447 (606)
70 PRK12370 invasion protein regu 99.2 1.9E-10 4E-15 115.1 13.2 131 225-355 317-464 (553)
71 cd00189 TPR Tetratricopeptide 99.2 1.2E-10 2.6E-15 86.3 8.8 99 214-330 2-100 (100)
72 PF12895 Apc3: Anaphase-promot 99.2 8.4E-11 1.8E-15 87.1 7.5 81 225-324 2-84 (84)
73 TIGR02521 type_IV_pilW type IV 99.2 6E-10 1.3E-14 97.4 13.8 122 211-350 30-187 (234)
74 TIGR02521 type_IV_pilW type IV 99.2 5.7E-10 1.2E-14 97.6 13.2 91 262-352 133-223 (234)
75 PRK09782 bacteriophage N4 rece 99.2 3.7E-10 8E-15 118.5 13.9 110 225-353 589-698 (987)
76 PF13432 TPR_16: Tetratricopep 99.2 1.8E-10 3.8E-15 80.9 7.7 65 268-332 1-65 (65)
77 TIGR03302 OM_YfiO outer membra 99.1 9.6E-10 2.1E-14 97.8 13.7 115 211-340 32-157 (235)
78 PF13429 TPR_15: Tetratricopep 99.1 3.1E-10 6.8E-15 103.7 10.3 126 211-354 145-270 (280)
79 TIGR02552 LcrH_SycD type III s 99.1 6E-10 1.3E-14 90.1 10.7 95 259-353 12-106 (135)
80 CHL00033 ycf3 photosystem I as 99.1 8E-10 1.7E-14 93.1 11.5 107 210-331 33-153 (168)
81 COG5010 TadD Flp pilus assembl 99.1 6.9E-10 1.5E-14 96.5 11.0 124 212-353 100-223 (257)
82 KOG1173 Anaphase-promoting com 99.1 6.1E-10 1.3E-14 105.7 11.3 122 212-344 414-535 (611)
83 PLN02789 farnesyltranstransfer 99.1 1.6E-09 3.6E-14 100.2 13.7 117 211-345 70-189 (320)
84 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-09 3.7E-14 99.7 13.6 114 226-353 40-153 (296)
85 PRK15174 Vi polysaccharide exp 99.1 1E-09 2.2E-14 111.8 12.7 117 218-352 218-338 (656)
86 PRK15174 Vi polysaccharide exp 99.1 1.2E-09 2.5E-14 111.4 12.8 123 212-352 246-372 (656)
87 KOG0624 dsRNA-activated protei 99.0 7.4E-10 1.6E-14 99.4 8.2 125 210-348 267-391 (504)
88 KOG0553 TPR repeat-containing 99.0 9.3E-10 2E-14 97.5 8.5 92 267-359 84-175 (304)
89 KOG4555 TPR repeat-containing 99.0 7.2E-09 1.6E-13 80.7 12.2 106 207-330 38-147 (175)
90 PRK15363 pathogenicity island 99.0 4.2E-09 9.1E-14 85.8 11.2 96 261-356 32-127 (157)
91 KOG0550 Molecular chaperone (D 99.0 4E-09 8.7E-14 96.9 12.0 139 211-355 202-344 (486)
92 KOG2003 TPR repeat-containing 99.0 2E-09 4.3E-14 99.8 9.4 128 211-356 489-616 (840)
93 PRK10049 pgaA outer membrane p 99.0 4.2E-09 9.1E-14 109.3 13.1 115 212-345 49-163 (765)
94 PF13371 TPR_9: Tetratricopept 99.0 3.4E-09 7.4E-14 76.0 8.2 72 270-341 1-72 (73)
95 PRK10803 tol-pal system protei 99.0 9E-09 1.9E-13 92.6 12.7 111 213-341 143-260 (263)
96 COG3063 PilF Tfp pilus assembl 99.0 5E-09 1.1E-13 89.5 10.1 128 209-352 100-227 (250)
97 TIGR03302 OM_YfiO outer membra 99.0 5.7E-09 1.2E-13 92.8 11.1 124 212-353 70-224 (235)
98 PRK11447 cellulose synthase su 98.9 7.4E-09 1.6E-13 112.2 13.2 120 216-353 355-516 (1157)
99 COG4783 Putative Zn-dependent 98.9 1.2E-08 2.7E-13 95.7 12.7 131 211-359 305-435 (484)
100 TIGR02917 PEP_TPR_lipo putativ 98.9 8.8E-09 1.9E-13 107.9 13.3 124 211-352 124-247 (899)
101 TIGR02917 PEP_TPR_lipo putativ 98.9 9.1E-09 2E-13 107.8 13.2 128 212-359 770-897 (899)
102 PLN02789 farnesyltranstransfer 98.9 3.5E-08 7.5E-13 91.4 15.4 113 221-351 46-161 (320)
103 PRK11788 tetratricopeptide rep 98.9 1.7E-08 3.8E-13 96.4 13.9 116 215-349 183-299 (389)
104 PRK11788 tetratricopeptide rep 98.9 1.4E-08 3.1E-13 97.0 13.2 140 213-352 108-269 (389)
105 PRK15179 Vi polysaccharide bio 98.9 1.5E-08 3.2E-13 102.7 13.2 121 207-345 115-236 (694)
106 PF13432 TPR_16: Tetratricopep 98.9 2.4E-09 5.3E-14 75.0 5.4 64 217-298 2-65 (65)
107 PRK11447 cellulose synthase su 98.9 1.1E-08 2.3E-13 111.0 13.0 115 217-349 274-402 (1157)
108 KOG2076 RNA polymerase III tra 98.9 2.7E-08 5.8E-13 99.2 14.5 125 211-353 138-262 (895)
109 PF14559 TPR_19: Tetratricopep 98.9 4.2E-09 9.2E-14 74.4 6.0 67 275-341 2-68 (68)
110 PF06552 TOM20_plant: Plant sp 98.9 2.1E-08 4.5E-13 82.9 10.5 105 227-349 6-131 (186)
111 COG4235 Cytochrome c biogenesi 98.9 1.8E-08 3.8E-13 89.9 10.9 120 205-342 149-271 (287)
112 PRK10866 outer membrane biogen 98.8 1.2E-07 2.6E-12 84.6 15.6 131 211-356 31-185 (243)
113 cd00189 TPR Tetratricopeptide 98.8 8.4E-08 1.8E-12 70.6 11.6 88 266-353 2-89 (100)
114 PF13512 TPR_18: Tetratricopep 98.8 6.2E-08 1.4E-12 77.6 10.8 110 212-336 10-137 (142)
115 COG4785 NlpI Lipoprotein NlpI, 98.8 3.5E-08 7.6E-13 83.5 9.6 113 211-341 64-178 (297)
116 PRK10049 pgaA outer membrane p 98.8 4.7E-08 1E-12 101.6 12.8 110 213-340 360-469 (765)
117 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.2E-08 2.6E-13 96.1 7.4 71 257-327 68-141 (453)
118 KOG4162 Predicted calmodulin-b 98.8 2.8E-08 6E-13 97.7 9.7 105 211-333 683-789 (799)
119 PRK14574 hmsH outer membrane p 98.8 8.3E-08 1.8E-12 99.1 13.0 114 212-345 34-149 (822)
120 PLN03088 SGT1, suppressor of 98.8 7.9E-08 1.7E-12 90.8 11.8 89 267-355 5-93 (356)
121 PF13525 YfiO: Outer membrane 98.8 1.9E-07 4.1E-12 81.2 13.4 127 211-352 4-147 (203)
122 CHL00033 ycf3 photosystem I as 98.7 1.7E-07 3.6E-12 78.9 12.4 110 220-345 7-119 (168)
123 PF14559 TPR_19: Tetratricopep 98.7 2.4E-08 5.2E-13 70.5 6.0 67 222-306 1-67 (68)
124 PF13424 TPR_12: Tetratricopep 98.7 2.6E-08 5.6E-13 72.5 6.2 67 261-327 2-75 (78)
125 KOG1125 TPR repeat-containing 98.7 7.8E-08 1.7E-12 91.9 10.1 153 205-357 312-523 (579)
126 KOG1129 TPR repeat-containing 98.7 3E-08 6.5E-13 88.7 6.8 141 212-352 290-449 (478)
127 KOG1310 WD40 repeat protein [G 98.7 6.3E-08 1.4E-12 91.5 9.3 124 205-346 367-493 (758)
128 PRK02603 photosystem I assembl 98.7 1.8E-07 3.9E-12 79.1 11.0 89 259-347 30-121 (172)
129 KOG1128 Uncharacterized conser 98.7 6.1E-08 1.3E-12 94.8 8.8 122 211-350 484-605 (777)
130 COG5010 TadD Flp pilus assembl 98.7 2.4E-07 5.1E-12 80.9 11.3 122 216-355 70-191 (257)
131 PF13424 TPR_12: Tetratricopep 98.7 1E-07 2.2E-12 69.2 7.8 74 210-294 3-76 (78)
132 PF13429 TPR_15: Tetratricopep 98.7 1.3E-07 2.7E-12 86.5 10.1 125 213-353 111-235 (280)
133 KOG2002 TPR-containing nuclear 98.7 3.7E-07 7.9E-12 92.0 13.9 121 211-346 269-390 (1018)
134 PF13371 TPR_9: Tetratricopept 98.7 6.3E-08 1.4E-12 69.3 6.3 70 219-306 2-71 (73)
135 TIGR02795 tol_pal_ybgF tol-pal 98.7 3.3E-07 7.1E-12 71.8 10.9 88 265-352 3-96 (119)
136 PF09976 TPR_21: Tetratricopep 98.6 2.6E-07 5.7E-12 75.8 10.3 97 212-324 48-144 (145)
137 COG4783 Putative Zn-dependent 98.6 6.1E-07 1.3E-11 84.6 13.7 112 215-344 343-454 (484)
138 PF12688 TPR_5: Tetratrico pep 98.6 4.8E-07 1E-11 71.2 11.1 99 213-326 2-103 (120)
139 KOG1840 Kinesin light chain [C 98.6 6.6E-07 1.4E-11 87.0 12.7 133 211-353 282-430 (508)
140 KOG2002 TPR-containing nuclear 98.6 1.9E-07 4.1E-12 94.0 9.0 114 218-349 652-767 (1018)
141 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 4.4E-07 9.5E-12 85.7 10.1 67 210-294 73-142 (453)
142 KOG1840 Kinesin light chain [C 98.5 1.1E-06 2.3E-11 85.6 13.0 129 212-350 199-343 (508)
143 PF12968 DUF3856: Domain of Un 98.5 5.1E-06 1.1E-10 63.7 13.9 106 216-327 13-129 (144)
144 COG1729 Uncharacterized protei 98.5 1.2E-06 2.7E-11 77.3 11.3 115 212-341 141-258 (262)
145 KOG3060 Uncharacterized conser 98.5 3.3E-06 7.2E-11 73.4 13.1 137 214-350 88-243 (289)
146 PRK14574 hmsH outer membrane p 98.5 1.2E-06 2.6E-11 90.6 12.0 118 212-348 102-219 (822)
147 TIGR00540 hemY_coli hemY prote 98.5 3.9E-06 8.4E-11 81.0 14.6 127 208-352 80-207 (409)
148 COG2956 Predicted N-acetylgluc 98.4 5E-06 1.1E-10 74.7 13.5 126 215-353 144-270 (389)
149 PRK10747 putative protoheme IX 98.4 6.1E-06 1.3E-10 79.3 15.4 126 208-352 80-207 (398)
150 PF09976 TPR_21: Tetratricopep 98.4 5.2E-06 1.1E-10 68.0 12.7 129 210-354 9-140 (145)
151 KOG1173 Anaphase-promoting com 98.4 1.4E-06 2.9E-11 83.4 9.7 128 210-355 310-437 (611)
152 PF12895 Apc3: Anaphase-promot 98.4 4.9E-07 1.1E-11 66.8 5.3 78 277-355 2-81 (84)
153 PRK14720 transcript cleavage f 98.4 2.8E-06 6.2E-11 87.4 12.4 120 212-352 31-169 (906)
154 KOG1156 N-terminal acetyltrans 98.4 3.2E-06 6.9E-11 82.0 11.8 121 214-352 9-129 (700)
155 KOG2076 RNA polymerase III tra 98.4 4.2E-06 9.2E-11 83.9 13.0 101 211-329 172-272 (895)
156 PRK11906 transcriptional regul 98.4 3.6E-06 7.7E-11 79.8 11.4 108 227-352 273-392 (458)
157 KOG3060 Uncharacterized conser 98.4 1.7E-05 3.7E-10 69.1 14.4 84 211-312 153-239 (289)
158 cd05804 StaR_like StaR_like; a 98.3 2.2E-06 4.8E-11 80.9 9.7 100 212-329 114-217 (355)
159 PRK10153 DNA-binding transcrip 98.3 7E-06 1.5E-10 81.0 12.7 121 212-333 339-488 (517)
160 TIGR00540 hemY_coli hemY prote 98.3 4.1E-06 9E-11 80.8 10.6 127 211-357 262-394 (409)
161 KOG4648 Uncharacterized conser 98.3 1.7E-06 3.7E-11 78.1 7.2 87 267-353 100-186 (536)
162 COG2956 Predicted N-acetylgluc 98.3 1.3E-05 2.8E-10 72.1 12.4 129 209-356 177-306 (389)
163 KOG4162 Predicted calmodulin-b 98.3 1E-05 2.3E-10 80.0 13.0 123 212-352 650-774 (799)
164 cd05804 StaR_like StaR_like; a 98.3 6.6E-06 1.4E-10 77.6 11.5 142 212-353 43-207 (355)
165 PRK15331 chaperone protein Sic 98.3 1E-05 2.2E-10 66.5 10.9 96 259-354 32-127 (165)
166 PF12688 TPR_5: Tetratrico pep 98.3 1.3E-05 2.9E-10 63.1 10.8 88 265-352 2-95 (120)
167 PF00515 TPR_1: Tetratricopept 98.2 1.6E-06 3.4E-11 52.1 3.9 32 299-330 2-33 (34)
168 KOG1129 TPR repeat-containing 98.2 1.6E-06 3.4E-11 77.9 5.4 114 212-343 256-369 (478)
169 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.3E-06 1.2E-10 78.6 9.1 82 270-351 206-287 (395)
170 KOG0543 FKBP-type peptidyl-pro 98.2 4.3E-06 9.4E-11 77.4 8.0 100 212-329 257-357 (397)
171 PRK10153 DNA-binding transcrip 98.2 9.3E-06 2E-10 80.2 10.8 54 227-299 435-488 (517)
172 COG4235 Cytochrome c biogenesi 98.2 1.6E-05 3.4E-10 71.2 11.0 93 259-351 151-246 (287)
173 COG4700 Uncharacterized protei 98.2 3.6E-05 7.8E-10 64.1 12.2 113 212-342 89-203 (251)
174 PRK10803 tol-pal system protei 98.2 1.7E-05 3.7E-10 71.4 11.3 88 264-351 142-236 (263)
175 PF03704 BTAD: Bacterial trans 98.2 3.5E-05 7.7E-10 63.1 12.3 113 215-327 9-125 (146)
176 PF13428 TPR_14: Tetratricopep 98.2 4.6E-06 9.9E-11 53.4 5.3 42 299-340 2-43 (44)
177 PF13431 TPR_17: Tetratricopep 98.2 1.7E-06 3.6E-11 52.0 2.8 33 287-319 2-34 (34)
178 PF14938 SNAP: Soluble NSF att 98.2 4.5E-05 9.9E-10 69.8 13.4 109 211-331 113-229 (282)
179 KOG1128 Uncharacterized conser 98.1 1.5E-05 3.3E-10 78.4 10.4 93 263-355 484-576 (777)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.9E-05 6.4E-10 73.6 11.7 77 260-336 230-306 (395)
181 PF00515 TPR_1: Tetratricopept 98.1 4.6E-06 1E-10 50.0 4.1 33 265-297 2-34 (34)
182 PF07719 TPR_2: Tetratricopept 98.1 6.3E-06 1.4E-10 49.3 4.6 34 298-331 1-34 (34)
183 KOG4234 TPR repeat-containing 98.1 1.9E-05 4.1E-10 66.4 8.7 81 270-350 101-186 (271)
184 KOG1156 N-terminal acetyltrans 98.1 2E-05 4.3E-10 76.7 10.0 121 212-350 41-161 (700)
185 PRK10747 putative protoheme IX 98.1 2.9E-05 6.3E-10 74.7 11.0 120 210-351 261-380 (398)
186 COG4105 ComL DNA uptake lipopr 98.1 0.00017 3.8E-09 63.3 14.5 132 211-357 33-178 (254)
187 PF14938 SNAP: Soluble NSF att 98.1 3.6E-05 7.8E-10 70.4 10.9 132 208-352 31-175 (282)
188 PRK11906 transcriptional regul 98.1 2.3E-05 4.9E-10 74.4 9.4 89 225-331 317-405 (458)
189 KOG1174 Anaphase-promoting com 98.0 2E-05 4.2E-10 73.1 8.6 110 212-339 300-409 (564)
190 PF04733 Coatomer_E: Coatomer 98.0 2E-05 4.3E-10 72.2 8.8 109 220-348 139-251 (290)
191 KOG4555 TPR repeat-containing 98.0 0.00012 2.7E-09 57.4 11.3 86 267-352 46-135 (175)
192 PRK14720 transcript cleavage f 98.0 4E-05 8.6E-10 79.2 11.0 114 212-344 116-269 (906)
193 PF12569 NARP1: NMDA receptor- 98.0 4.3E-05 9.3E-10 75.2 10.8 92 263-354 193-284 (517)
194 KOG1130 Predicted G-alpha GTPa 98.0 1.7E-05 3.6E-10 73.5 6.9 110 207-328 190-305 (639)
195 PF14853 Fis1_TPR_C: Fis1 C-te 98.0 4.5E-05 9.8E-10 50.5 7.2 49 299-347 2-50 (53)
196 PF13525 YfiO: Outer membrane 98.0 0.00021 4.5E-09 62.1 13.5 124 211-349 41-195 (203)
197 PF13428 TPR_14: Tetratricopep 98.0 1.2E-05 2.6E-10 51.4 4.3 42 265-306 2-43 (44)
198 KOG1127 TPR repeat-containing 98.0 3.1E-05 6.7E-10 78.7 9.1 116 212-345 562-677 (1238)
199 KOG1127 TPR repeat-containing 98.0 3.6E-05 7.8E-10 78.2 9.6 142 210-351 490-649 (1238)
200 KOG2003 TPR repeat-containing 98.0 5.7E-05 1.2E-09 70.8 10.2 78 268-345 630-707 (840)
201 KOG0495 HAT repeat protein [RN 97.9 0.00012 2.5E-09 71.6 12.2 126 213-356 652-777 (913)
202 KOG1174 Anaphase-promoting com 97.9 0.00028 6E-09 65.6 14.0 102 211-330 333-470 (564)
203 COG1729 Uncharacterized protei 97.9 0.00014 3.1E-09 64.4 11.1 87 267-353 144-236 (262)
204 PF07719 TPR_2: Tetratricopept 97.8 3.3E-05 7.2E-10 46.0 4.4 33 265-297 2-34 (34)
205 PF15015 NYD-SP12_N: Spermatog 97.8 0.00022 4.8E-09 66.3 11.0 113 214-326 178-290 (569)
206 PF04733 Coatomer_E: Coatomer 97.8 0.00012 2.5E-09 67.2 9.1 93 227-337 182-275 (290)
207 KOG0495 HAT repeat protein [RN 97.8 0.00016 3.4E-09 70.7 9.6 85 264-348 651-735 (913)
208 PRK10866 outer membrane biogen 97.7 0.00019 4E-09 64.2 9.4 79 263-341 31-115 (243)
209 PF13512 TPR_18: Tetratricopep 97.7 0.0002 4.3E-09 57.6 8.5 70 264-333 10-82 (142)
210 KOG4642 Chaperone-dependent E3 97.7 6.5E-05 1.4E-09 64.9 6.0 82 270-351 16-97 (284)
211 KOG4151 Myosin assembly protei 97.7 0.00013 2.8E-09 72.8 8.9 129 203-345 44-174 (748)
212 PRK10941 hypothetical protein; 97.7 0.00036 7.8E-09 62.9 10.9 81 262-342 179-259 (269)
213 KOG1130 Predicted G-alpha GTPa 97.7 0.00012 2.6E-09 67.9 7.3 123 211-345 234-368 (639)
214 PF13181 TPR_8: Tetratricopept 97.7 7.4E-05 1.6E-09 44.6 3.9 32 299-330 2-33 (34)
215 KOG3785 Uncharacterized conser 97.6 0.0003 6.5E-09 64.2 9.1 70 271-340 158-227 (557)
216 KOG2796 Uncharacterized conser 97.6 0.0013 2.7E-08 58.0 11.8 114 214-341 214-332 (366)
217 KOG1941 Acetylcholine receptor 97.5 0.0004 8.8E-09 63.6 8.3 125 214-350 124-264 (518)
218 PF13431 TPR_17: Tetratricopep 97.5 4.7E-05 1E-09 45.6 1.5 34 234-285 1-34 (34)
219 KOG3785 Uncharacterized conser 97.5 0.00073 1.6E-08 61.8 9.6 86 222-324 32-117 (557)
220 COG3071 HemY Uncharacterized e 97.4 0.0041 8.8E-08 57.8 13.7 127 207-351 79-206 (400)
221 COG2976 Uncharacterized protei 97.4 0.0031 6.8E-08 53.2 11.8 105 211-331 88-192 (207)
222 KOG2053 Mitochondrial inherita 97.4 0.0027 5.9E-08 64.4 13.3 116 221-355 18-133 (932)
223 PF13181 TPR_8: Tetratricopept 97.4 0.00022 4.7E-09 42.5 3.6 33 265-297 2-34 (34)
224 COG3118 Thioredoxin domain-con 97.4 0.0039 8.5E-08 56.0 12.8 129 214-360 136-304 (304)
225 KOG3364 Membrane protein invol 97.4 0.0049 1.1E-07 48.8 11.5 86 262-347 30-120 (149)
226 KOG2376 Signal recognition par 97.4 0.0016 3.5E-08 63.1 10.5 91 216-327 83-204 (652)
227 KOG4814 Uncharacterized conser 97.3 0.0019 4.2E-08 63.2 10.9 103 213-327 355-457 (872)
228 KOG0882 Cyclophilin-related pe 97.3 0.00044 9.5E-09 64.7 6.3 146 17-174 111-263 (558)
229 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00067 1.4E-08 58.0 6.7 81 260-340 61-141 (297)
230 PF12569 NARP1: NMDA receptor- 97.3 0.0043 9.3E-08 61.3 13.4 126 212-355 194-328 (517)
231 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0063 1.4E-07 51.5 12.7 116 212-345 95-215 (291)
232 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.00091 2E-08 44.3 5.5 42 265-306 2-43 (53)
233 KOG1586 Protein required for f 97.3 0.0099 2.2E-07 51.6 13.2 126 212-349 113-248 (288)
234 KOG0376 Serine-threonine phosp 97.3 0.00048 1E-08 65.4 5.8 82 269-350 9-90 (476)
235 KOG3081 Vesicle coat complex C 97.2 0.0072 1.6E-07 53.4 12.1 81 268-348 173-257 (299)
236 PF06552 TOM20_plant: Plant sp 97.2 0.0026 5.6E-08 53.1 8.6 68 280-347 7-84 (186)
237 KOG4507 Uncharacterized conser 97.2 0.0012 2.7E-08 63.9 7.4 107 219-343 614-721 (886)
238 PF10300 DUF3808: Protein of u 97.1 0.0039 8.3E-08 61.2 10.9 104 211-329 266-378 (468)
239 KOG3824 Huntingtin interacting 97.1 0.0024 5.2E-08 57.4 8.3 79 266-344 118-196 (472)
240 COG0457 NrfG FOG: TPR repeat [ 97.1 0.012 2.5E-07 49.9 12.6 108 221-343 139-247 (291)
241 KOG1308 Hsp70-interacting prot 97.1 0.0002 4.2E-09 65.1 1.4 80 275-354 125-204 (377)
242 PF13174 TPR_6: Tetratricopept 97.1 0.00092 2E-08 39.2 3.8 31 300-330 2-32 (33)
243 PF09986 DUF2225: Uncharacteri 97.1 0.012 2.5E-07 51.5 12.1 102 218-330 83-197 (214)
244 KOG2471 TPR repeat-containing 97.1 0.00083 1.8E-08 63.8 5.1 81 263-343 282-380 (696)
245 KOG0545 Aryl-hydrocarbon recep 97.0 0.0048 1E-07 53.8 8.8 87 262-348 176-280 (329)
246 PLN03081 pentatricopeptide (PP 97.0 0.0051 1.1E-07 63.7 10.4 84 264-347 494-603 (697)
247 smart00028 TPR Tetratricopepti 96.9 0.0016 3.5E-08 37.1 3.8 31 300-330 3-33 (34)
248 PF13176 TPR_7: Tetratricopept 96.9 0.0016 3.4E-08 39.5 3.7 25 301-325 2-26 (36)
249 KOG1941 Acetylcholine receptor 96.9 0.0037 8.1E-08 57.5 7.6 92 260-351 79-181 (518)
250 PF13176 TPR_7: Tetratricopept 96.9 0.0019 4.1E-08 39.1 3.9 29 266-294 1-29 (36)
251 COG4105 ComL DNA uptake lipopr 96.9 0.0083 1.8E-07 52.9 9.3 71 264-334 34-107 (254)
252 PF10602 RPN7: 26S proteasome 96.8 0.016 3.6E-07 49.0 10.7 101 211-326 35-141 (177)
253 PF14561 TPR_20: Tetratricopep 96.8 0.0067 1.4E-07 45.2 7.3 67 283-349 7-75 (90)
254 KOG4340 Uncharacterized conser 96.8 0.011 2.4E-07 53.2 9.7 103 222-346 20-122 (459)
255 KOG2396 HAT (Half-A-TPR) repea 96.8 0.03 6.4E-07 53.8 13.0 107 228-352 87-194 (568)
256 PF13174 TPR_6: Tetratricopept 96.8 0.0021 4.6E-08 37.6 3.5 32 266-297 2-33 (33)
257 KOG1915 Cell cycle control pro 96.8 0.029 6.2E-07 53.6 12.5 128 212-359 73-200 (677)
258 COG4700 Uncharacterized protei 96.7 0.031 6.8E-07 47.0 11.3 85 266-350 91-178 (251)
259 KOG0551 Hsp90 co-chaperone CNS 96.7 0.014 3E-07 53.2 9.9 66 212-295 119-184 (390)
260 KOG2376 Signal recognition par 96.7 0.011 2.4E-07 57.6 9.9 75 268-345 83-159 (652)
261 KOG4340 Uncharacterized conser 96.7 0.033 7.3E-07 50.1 11.6 28 214-241 46-73 (459)
262 PF05843 Suf: Suppressor of fo 96.6 0.017 3.7E-07 52.7 10.3 118 214-349 3-124 (280)
263 PF04184 ST7: ST7 protein; In 96.6 0.02 4.4E-07 54.9 10.8 53 300-352 261-315 (539)
264 smart00028 TPR Tetratricopepti 96.6 0.0038 8.3E-08 35.4 3.9 32 265-296 2-33 (34)
265 PRK04841 transcriptional regul 96.6 0.031 6.7E-07 59.6 13.4 103 215-329 494-604 (903)
266 COG2912 Uncharacterized conser 96.6 0.038 8.1E-07 49.4 11.6 82 259-340 176-257 (269)
267 KOG1915 Cell cycle control pro 96.6 0.04 8.8E-07 52.6 12.1 114 224-352 378-491 (677)
268 PRK04841 transcriptional regul 96.6 0.042 9.2E-07 58.6 14.1 101 215-328 455-561 (903)
269 PF08631 SPO22: Meiosis protei 96.5 0.23 4.9E-06 45.3 16.4 122 203-329 26-152 (278)
270 KOG2796 Uncharacterized conser 96.5 0.049 1.1E-06 48.2 11.2 123 211-350 176-304 (366)
271 KOG3081 Vesicle coat complex C 96.4 0.068 1.5E-06 47.4 11.8 72 263-334 206-278 (299)
272 COG3071 HemY Uncharacterized e 96.4 0.048 1E-06 50.9 11.5 118 212-351 263-380 (400)
273 PF03704 BTAD: Bacterial trans 96.4 0.12 2.5E-06 42.0 12.9 85 269-353 11-117 (146)
274 PF04184 ST7: ST7 protein; In 96.4 0.039 8.4E-07 53.1 11.0 116 227-342 215-340 (539)
275 COG4976 Predicted methyltransf 96.3 0.0065 1.4E-07 52.5 4.8 60 273-332 4-63 (287)
276 PLN03218 maturation of RBCL 1; 96.2 0.054 1.2E-06 58.3 12.5 29 212-240 542-570 (1060)
277 PLN03218 maturation of RBCL 1; 96.2 0.06 1.3E-06 58.0 12.5 96 214-327 509-608 (1060)
278 PLN03077 Protein ECB2; Provisi 96.2 0.057 1.2E-06 57.4 12.3 61 266-326 659-719 (857)
279 KOG3824 Huntingtin interacting 96.1 0.0085 1.8E-07 54.0 5.0 80 210-307 114-193 (472)
280 TIGR03268 methan_mark_3 putati 96.1 0.025 5.4E-07 54.2 8.2 104 17-152 200-303 (503)
281 PRK00969 hypothetical protein; 96.0 0.039 8.5E-07 53.1 9.0 104 17-152 203-306 (508)
282 PLN03081 pentatricopeptide (PP 96.0 0.046 1E-06 56.6 10.3 109 217-347 264-375 (697)
283 PF04781 DUF627: Protein of un 95.8 0.041 8.8E-07 42.2 6.8 103 218-328 2-108 (111)
284 PLN03077 Protein ECB2; Provisi 95.7 0.078 1.7E-06 56.3 11.0 138 211-352 553-711 (857)
285 KOG1585 Protein required for f 95.7 0.11 2.3E-06 45.7 9.6 100 217-328 115-220 (308)
286 PF10300 DUF3808: Protein of u 95.7 0.12 2.6E-06 50.9 11.1 83 259-341 262-348 (468)
287 COG4070 Predicted peptidyl-pro 95.7 0.033 7.2E-07 51.5 6.6 106 15-152 200-305 (512)
288 TIGR03268 methan_mark_3 putati 95.6 0.072 1.6E-06 51.2 9.0 114 19-152 376-495 (503)
289 PF13374 TPR_10: Tetratricopep 95.5 0.025 5.5E-07 34.8 4.0 29 265-293 3-31 (42)
290 KOG1586 Protein required for f 95.5 0.47 1E-05 41.5 12.7 108 211-331 33-147 (288)
291 KOG2610 Uncharacterized conser 95.5 0.22 4.9E-06 45.7 11.2 58 266-323 177-234 (491)
292 KOG2471 TPR repeat-containing 95.5 0.023 5E-07 54.3 5.2 99 211-311 282-382 (696)
293 PF10579 Rapsyn_N: Rapsyn N-te 95.3 0.084 1.8E-06 37.8 6.3 68 211-293 5-72 (80)
294 PF05843 Suf: Suppressor of fo 95.3 0.38 8.2E-06 43.9 12.4 106 213-336 36-145 (280)
295 KOG4507 Uncharacterized conser 95.2 0.072 1.6E-06 52.2 7.6 120 224-359 225-347 (886)
296 KOG1585 Protein required for f 95.1 1.1 2.3E-05 39.6 13.8 108 212-331 31-143 (308)
297 PRK10941 hypothetical protein; 95.0 0.1 2.3E-06 47.1 7.9 79 212-308 181-259 (269)
298 PRK00969 hypothetical protein; 94.9 0.16 3.4E-06 49.0 8.9 113 19-152 379-497 (508)
299 KOG0686 COP9 signalosome, subu 94.8 0.15 3.3E-06 47.8 8.4 114 213-341 151-280 (466)
300 PF12862 Apc5: Anaphase-promot 94.8 0.17 3.6E-06 37.9 7.3 65 222-295 8-72 (94)
301 COG4976 Predicted methyltransf 94.8 0.044 9.5E-07 47.5 4.5 60 220-297 3-62 (287)
302 PF08631 SPO22: Meiosis protei 94.7 1.4 3.1E-05 40.1 14.5 110 222-341 3-130 (278)
303 KOG2610 Uncharacterized conser 94.6 0.083 1.8E-06 48.4 6.0 81 225-323 188-272 (491)
304 COG3629 DnrI DNA-binding trans 94.6 0.25 5.4E-06 44.7 9.1 70 258-327 147-216 (280)
305 PF13374 TPR_10: Tetratricopep 94.6 0.074 1.6E-06 32.6 4.2 30 298-327 2-31 (42)
306 KOG1070 rRNA processing protei 94.4 0.48 1E-05 51.1 11.8 78 264-341 1564-1643(1710)
307 KOG1070 rRNA processing protei 94.4 0.49 1.1E-05 51.0 11.8 84 265-348 1531-1616(1710)
308 COG5191 Uncharacterized conser 94.4 0.1 2.3E-06 47.3 6.1 85 260-344 103-188 (435)
309 COG3947 Response regulator con 94.4 0.26 5.7E-06 44.3 8.5 72 255-326 270-341 (361)
310 COG2976 Uncharacterized protei 94.4 1 2.2E-05 38.3 11.5 132 218-353 37-180 (207)
311 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.083 1.8E-06 32.3 3.8 29 299-327 2-30 (38)
312 PF02259 FAT: FAT domain; Int 94.3 0.49 1.1E-05 44.3 11.0 118 213-330 185-341 (352)
313 PRK13184 pknD serine/threonine 94.3 0.41 9E-06 50.6 11.0 123 216-354 479-608 (932)
314 PF09986 DUF2225: Uncharacteri 94.2 0.37 8E-06 42.1 9.2 88 207-306 120-208 (214)
315 COG4070 Predicted peptidyl-pro 94.1 0.2 4.3E-06 46.6 7.3 114 19-152 377-498 (512)
316 PF10952 DUF2753: Protein of u 94.0 0.34 7.3E-06 37.8 7.4 117 214-340 3-124 (140)
317 PF04910 Tcf25: Transcriptiona 94.0 0.34 7.4E-06 45.9 9.1 104 225-334 7-140 (360)
318 KOG2300 Uncharacterized conser 93.9 2.1 4.6E-05 41.4 13.9 99 211-328 366-475 (629)
319 PF12968 DUF3856: Domain of Un 93.6 0.6 1.3E-05 36.4 7.9 75 212-293 55-129 (144)
320 PF14561 TPR_20: Tetratricopep 93.5 0.71 1.5E-05 34.3 8.2 39 259-297 17-55 (90)
321 PF12862 Apc5: Anaphase-promot 93.3 0.36 7.7E-06 36.1 6.5 57 274-330 8-73 (94)
322 PF09613 HrpB1_HrpK: Bacterial 93.2 0.97 2.1E-05 37.3 9.3 83 263-345 9-91 (160)
323 PF09613 HrpB1_HrpK: Bacterial 93.2 3.4 7.3E-05 34.1 12.4 112 212-343 10-121 (160)
324 PF10602 RPN7: 26S proteasome 93.2 4.6 9.9E-05 34.1 13.8 70 260-329 32-104 (177)
325 PF08424 NRDE-2: NRDE-2, neces 93.1 3.2 7E-05 38.7 13.9 86 259-344 14-111 (321)
326 PF07720 TPR_3: Tetratricopept 93.0 0.3 6.4E-06 29.4 4.5 33 299-331 2-36 (36)
327 COG3898 Uncharacterized membra 92.9 1.4 3.1E-05 41.4 10.7 97 212-326 120-216 (531)
328 KOG4814 Uncharacterized conser 92.7 0.6 1.3E-05 46.5 8.5 76 266-341 356-437 (872)
329 PF02259 FAT: FAT domain; Int 92.7 1.5 3.2E-05 41.0 11.3 126 211-350 145-310 (352)
330 PF06957 COPI_C: Coatomer (COP 92.4 1.1 2.3E-05 43.1 9.8 120 212-334 204-336 (422)
331 KOG2053 Mitochondrial inherita 92.4 0.39 8.5E-06 49.4 7.1 97 217-332 48-144 (932)
332 KOG2047 mRNA splicing factor [ 92.4 2.1 4.5E-05 42.9 11.7 119 210-328 423-541 (835)
333 PHA02537 M terminase endonucle 92.3 2.5 5.4E-05 37.2 11.2 119 223-348 94-227 (230)
334 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.19 4E-06 30.7 3.0 33 212-244 1-33 (38)
335 KOG3364 Membrane protein invol 92.2 0.48 1E-05 37.8 5.9 43 263-305 70-112 (149)
336 COG3914 Spy Predicted O-linked 91.9 1.5 3.2E-05 43.3 10.0 101 224-342 79-186 (620)
337 cd02681 MIT_calpain7_1 MIT: do 91.7 0.75 1.6E-05 32.9 6.0 35 210-244 4-38 (76)
338 COG0790 FOG: TPR repeat, SEL1 91.4 3.8 8.2E-05 37.3 12.2 106 212-339 109-230 (292)
339 PF07079 DUF1347: Protein of u 91.3 0.95 2.1E-05 43.4 7.9 72 271-346 469-544 (549)
340 KOG3617 WD40 and TPR repeat-co 91.3 4.1 9E-05 42.1 12.6 63 265-327 859-941 (1416)
341 KOG3617 WD40 and TPR repeat-co 91.3 0.98 2.1E-05 46.4 8.3 64 264-327 912-996 (1416)
342 PF15015 NYD-SP12_N: Spermatog 91.3 2.8 6E-05 39.9 10.7 56 300-355 230-285 (569)
343 PF10255 Paf67: RNA polymerase 91.0 0.71 1.5E-05 44.1 6.9 133 218-360 128-264 (404)
344 PF07721 TPR_4: Tetratricopept 90.8 0.34 7.3E-06 26.7 2.8 24 299-322 2-25 (26)
345 COG3898 Uncharacterized membra 90.8 5 0.00011 38.0 11.8 110 220-341 196-305 (531)
346 KOG1550 Extracellular protein 90.7 2.3 5E-05 42.9 10.6 92 215-328 291-394 (552)
347 KOG1310 WD40 repeat protein [G 90.6 0.98 2.1E-05 44.1 7.3 76 277-352 387-465 (758)
348 PF10345 Cohesin_load: Cohesin 90.6 6.5 0.00014 40.2 13.9 122 211-345 58-188 (608)
349 PF04212 MIT: MIT (microtubule 90.3 1.3 2.7E-05 31.0 6.1 38 210-247 3-40 (69)
350 KOG1497 COP9 signalosome, subu 90.3 8 0.00017 35.6 12.4 99 259-358 98-206 (399)
351 TIGR03504 FimV_Cterm FimV C-te 90.1 1 2.3E-05 28.4 4.9 25 302-326 3-27 (44)
352 PF10255 Paf67: RNA polymerase 89.8 0.66 1.4E-05 44.3 5.6 61 266-326 124-192 (404)
353 PF10373 EST1_DNA_bind: Est1 D 89.7 1.3 2.8E-05 40.0 7.3 62 283-344 1-62 (278)
354 KOG0530 Protein farnesyltransf 89.6 7.4 0.00016 34.9 11.4 107 224-348 55-163 (318)
355 cd02682 MIT_AAA_Arch MIT: doma 89.2 1.9 4.2E-05 30.7 6.2 36 210-245 4-39 (75)
356 KOG0529 Protein geranylgeranyl 89.1 6.8 0.00015 37.2 11.5 104 224-345 87-196 (421)
357 PF07720 TPR_3: Tetratricopept 88.8 1.2 2.7E-05 26.7 4.4 32 266-297 3-36 (36)
358 PF13281 DUF4071: Domain of un 88.8 4.1 8.8E-05 38.6 10.0 100 217-330 146-258 (374)
359 PF10345 Cohesin_load: Cohesin 88.8 8.7 0.00019 39.2 13.3 111 212-322 301-428 (608)
360 KOG2422 Uncharacterized conser 88.4 6.6 0.00014 38.9 11.2 119 217-341 240-386 (665)
361 KOG1550 Extracellular protein 88.2 5.2 0.00011 40.3 11.1 116 212-344 244-372 (552)
362 KOG1839 Uncharacterized protei 88.1 3.3 7.1E-05 44.7 9.7 106 211-327 931-1044(1236)
363 COG3914 Spy Predicted O-linked 87.9 4.1 8.9E-05 40.4 9.5 69 270-338 73-142 (620)
364 PF11817 Foie-gras_1: Foie gra 87.9 2.8 6E-05 37.5 8.0 62 262-323 176-243 (247)
365 KOG2047 mRNA splicing factor [ 87.9 19 0.00041 36.4 14.0 115 213-345 478-599 (835)
366 COG2912 Uncharacterized conser 87.7 1.2 2.6E-05 39.9 5.4 75 215-307 184-258 (269)
367 KOG0530 Protein farnesyltransf 87.7 5.8 0.00013 35.5 9.5 89 272-360 51-140 (318)
368 PF14863 Alkyl_sulf_dimr: Alky 87.4 2.6 5.7E-05 34.1 6.8 46 301-346 73-118 (141)
369 COG4455 ImpE Protein of avirul 87.4 5.6 0.00012 34.6 9.0 61 273-333 10-70 (273)
370 COG3118 Thioredoxin domain-con 87.1 4.9 0.00011 36.5 8.9 54 270-323 140-193 (304)
371 PF04910 Tcf25: Transcriptiona 87.0 17 0.00036 34.5 13.1 115 212-326 40-167 (360)
372 COG2909 MalT ATP-dependent tra 87.0 31 0.00067 36.2 15.4 108 212-328 415-527 (894)
373 PF13281 DUF4071: Domain of un 86.9 19 0.00042 34.2 13.2 85 262-346 139-231 (374)
374 cd02683 MIT_1 MIT: domain cont 86.8 1.6 3.6E-05 31.3 4.8 36 211-246 5-40 (77)
375 PF04781 DUF627: Protein of un 86.6 12 0.00025 28.9 9.5 83 270-352 2-98 (111)
376 cd02682 MIT_AAA_Arch MIT: doma 86.6 6.9 0.00015 27.9 7.7 23 303-325 11-33 (75)
377 TIGR02561 HrpB1_HrpK type III 86.5 7.4 0.00016 31.7 8.8 83 264-346 10-92 (153)
378 PF07079 DUF1347: Protein of u 86.4 2.6 5.7E-05 40.5 7.1 60 212-290 462-521 (549)
379 COG5091 SGT1 Suppressor of G2 85.7 1.4 2.9E-05 39.3 4.6 75 278-353 53-133 (368)
380 COG0790 FOG: TPR repeat, SEL1 85.3 12 0.00027 33.9 11.2 96 225-342 90-197 (292)
381 PF07721 TPR_4: Tetratricopept 85.2 1.1 2.5E-05 24.5 2.6 24 265-288 2-25 (26)
382 KOG1839 Uncharacterized protei 85.2 6.1 0.00013 42.8 9.8 128 211-348 972-1115(1236)
383 PF11817 Foie-gras_1: Foie gra 85.1 7.5 0.00016 34.7 9.3 51 299-349 179-235 (247)
384 PF10579 Rapsyn_N: Rapsyn N-te 85.1 4.9 0.00011 28.9 6.3 57 271-327 13-72 (80)
385 cd02684 MIT_2 MIT: domain cont 85.0 2.3 5E-05 30.3 4.8 36 210-245 4-39 (75)
386 PF10373 EST1_DNA_bind: Est1 D 84.6 2.4 5.3E-05 38.1 6.1 62 231-310 1-62 (278)
387 KOG0529 Protein geranylgeranyl 84.3 14 0.00031 35.1 10.8 90 259-348 58-161 (421)
388 cd02678 MIT_VPS4 MIT: domain c 84.3 2.6 5.6E-05 30.0 4.8 37 209-245 3-39 (75)
389 cd09239 BRO1_HD-PTP_like Prote 84.2 21 0.00045 33.9 12.2 119 207-326 109-280 (361)
390 smart00386 HAT HAT (Half-A-TPR 84.0 2.8 6E-05 23.5 4.2 30 312-341 1-30 (33)
391 smart00745 MIT Microtubule Int 84.0 5.6 0.00012 28.2 6.5 39 210-248 6-44 (77)
392 cd02656 MIT MIT: domain contai 83.5 3.4 7.3E-05 29.3 5.2 37 210-246 4-40 (75)
393 cd02680 MIT_calpain7_2 MIT: do 83.5 1.8 3.8E-05 30.9 3.6 34 211-244 5-38 (75)
394 PF04053 Coatomer_WDAD: Coatom 83.3 4.2 9.2E-05 39.7 7.3 27 265-291 348-374 (443)
395 cd02677 MIT_SNX15 MIT: domain 82.7 8.8 0.00019 27.3 7.0 39 210-248 4-42 (75)
396 PF14863 Alkyl_sulf_dimr: Alky 82.7 3.3 7.2E-05 33.5 5.4 52 265-316 71-122 (141)
397 KOG2300 Uncharacterized conser 82.6 44 0.00095 32.8 13.4 103 223-329 286-398 (629)
398 PF12903 DUF3830: Protein of u 82.6 11 0.00024 30.6 8.2 107 18-152 8-130 (147)
399 TIGR02561 HrpB1_HrpK type III 82.5 7.8 0.00017 31.6 7.3 82 216-315 14-95 (153)
400 KOG2041 WD40 repeat protein [G 82.5 5.7 0.00012 40.3 7.8 26 213-238 797-822 (1189)
401 KOG2114 Vacuolar assembly/sort 82.4 3.2 7E-05 42.8 6.2 33 211-243 367-399 (933)
402 COG3947 Response regulator con 82.4 3.7 8.1E-05 37.2 6.0 51 298-348 279-329 (361)
403 COG5191 Uncharacterized conser 81.8 1.1 2.4E-05 40.9 2.5 80 212-309 107-190 (435)
404 KOG2581 26S proteasome regulat 81.5 19 0.00041 34.3 10.4 70 264-333 209-282 (493)
405 cd02679 MIT_spastin MIT: domai 81.1 9.4 0.0002 27.5 6.6 37 209-245 5-41 (79)
406 cd09240 BRO1_Alix Protein-inte 81.1 25 0.00055 33.1 11.5 121 207-327 114-284 (346)
407 KOG0292 Vesicle coat complex C 80.2 20 0.00043 37.6 10.8 125 209-336 988-1122(1202)
408 TIGR03504 FimV_Cterm FimV C-te 80.2 3.6 7.9E-05 25.9 3.8 26 268-293 3-28 (44)
409 PF08424 NRDE-2: NRDE-2, neces 79.3 36 0.00077 31.7 11.8 86 225-328 44-132 (321)
410 PF09670 Cas_Cas02710: CRISPR- 78.8 19 0.00042 34.4 10.0 65 212-292 131-197 (379)
411 KOG0546 HSP90 co-chaperone CPR 78.4 0.88 1.9E-05 42.2 0.8 80 217-314 280-359 (372)
412 PF11207 DUF2989: Protein of u 78.2 6.8 0.00015 33.6 6.0 70 280-350 122-196 (203)
413 KOG2396 HAT (Half-A-TPR) repea 77.2 5 0.00011 39.1 5.4 67 224-308 117-187 (568)
414 PRK15180 Vi polysaccharide bio 76.3 10 0.00023 36.8 7.2 85 223-325 300-384 (831)
415 KOG3783 Uncharacterized conser 75.6 29 0.00062 34.3 10.1 80 266-345 451-538 (546)
416 COG3629 DnrI DNA-binding trans 74.8 7.3 0.00016 35.4 5.6 64 212-293 153-216 (280)
417 cd09241 BRO1_ScRim20-like Prot 74.7 75 0.0016 30.0 12.7 121 207-327 101-266 (355)
418 PF11846 DUF3366: Domain of un 74.6 11 0.00024 32.1 6.5 50 280-330 127-176 (193)
419 PF11207 DUF2989: Protein of u 74.5 4.1 8.9E-05 35.0 3.7 59 211-284 140-198 (203)
420 TIGR02710 CRISPR-associated pr 74.4 44 0.00095 31.9 10.8 62 214-288 132-195 (380)
421 KOG2561 Adaptor protein NUB1, 73.9 90 0.0019 30.3 12.5 110 211-327 162-296 (568)
422 COG4455 ImpE Protein of avirul 72.9 51 0.0011 29.0 9.8 92 221-330 10-118 (273)
423 smart00745 MIT Microtubule Int 71.4 19 0.0004 25.5 6.1 14 317-330 34-47 (77)
424 PRK15180 Vi polysaccharide bio 71.3 33 0.00072 33.5 9.2 65 282-346 760-824 (831)
425 COG4649 Uncharacterized protei 71.3 63 0.0014 27.3 11.3 113 213-340 95-208 (221)
426 COG5159 RPN6 26S proteasome re 71.2 51 0.0011 30.1 9.8 56 216-281 7-62 (421)
427 cd09034 BRO1_Alix_like Protein 70.8 51 0.0011 30.8 10.7 122 206-327 105-280 (345)
428 KOG1463 26S proteasome regulat 70.5 94 0.002 29.1 11.5 119 212-345 209-331 (411)
429 PF00244 14-3-3: 14-3-3 protei 70.0 12 0.00026 33.2 5.8 55 227-291 141-196 (236)
430 PF15469 Sec5: Exocyst complex 69.8 8.2 0.00018 32.6 4.6 20 223-242 97-116 (182)
431 PRK13184 pknD serine/threonine 69.2 34 0.00073 36.7 9.7 65 266-332 554-625 (932)
432 KOG4459 Membrane-associated pr 69.1 21 0.00046 34.5 7.4 122 213-344 32-179 (471)
433 KOG0985 Vesicle coat protein c 68.8 38 0.00082 36.3 9.6 106 215-346 1197-1327(1666)
434 PF09205 DUF1955: Domain of un 68.4 42 0.00091 27.0 7.8 61 267-327 88-149 (161)
435 KOG3616 Selective LIM binding 68.4 39 0.00085 34.9 9.4 107 217-324 666-791 (1636)
436 KOG0276 Vesicle coat complex C 68.0 26 0.00057 35.2 7.9 29 212-240 666-694 (794)
437 KOG3807 Predicted membrane pro 67.7 84 0.0018 29.4 10.6 47 302-348 279-327 (556)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 66.9 46 0.00099 26.2 8.0 61 259-325 64-126 (126)
439 cd09243 BRO1_Brox_like Protein 66.7 72 0.0016 30.2 10.6 121 206-326 103-276 (353)
440 cd02683 MIT_1 MIT: domain cont 63.2 52 0.0011 23.4 7.6 15 317-331 32-46 (77)
441 PF10952 DUF2753: Protein of u 63.0 31 0.00068 27.2 6.0 79 267-345 4-106 (140)
442 KOG3783 Uncharacterized conser 62.8 43 0.00093 33.2 8.3 96 212-324 267-372 (546)
443 PF12652 CotJB: CotJB protein; 62.1 36 0.00078 24.4 5.9 50 307-356 4-53 (78)
444 KOG1914 mRNA cleavage and poly 62.1 47 0.001 33.0 8.3 86 254-341 10-95 (656)
445 PF03097 BRO1: BRO1-like domai 61.9 52 0.0011 31.2 9.0 119 207-327 102-268 (377)
446 KOG1258 mRNA processing protei 61.4 1.9E+02 0.004 29.2 13.5 105 212-334 297-402 (577)
447 KOG1464 COP9 signalosome, subu 61.2 24 0.00053 31.8 5.9 50 276-325 39-92 (440)
448 KOG0739 AAA+-type ATPase [Post 60.6 32 0.0007 31.7 6.6 37 209-245 7-43 (439)
449 KOG0985 Vesicle coat protein c 60.1 1.3E+02 0.0029 32.6 11.5 104 218-328 1054-1163(1666)
450 cd02681 MIT_calpain7_1 MIT: do 59.4 17 0.00037 26.0 3.8 27 301-327 9-35 (76)
451 KOG1464 COP9 signalosome, subu 58.6 53 0.0012 29.7 7.5 109 212-326 65-173 (440)
452 COG4941 Predicted RNA polymera 58.3 51 0.0011 30.8 7.5 77 265-341 330-408 (415)
453 PF01239 PPTA: Protein prenylt 57.8 23 0.00049 20.0 3.6 26 283-308 2-27 (31)
454 PF12854 PPR_1: PPR repeat 57.1 23 0.0005 20.6 3.6 25 265-289 8-32 (34)
455 PF08238 Sel1: Sel1 repeat; I 56.8 23 0.0005 20.8 3.7 29 299-327 2-37 (39)
456 COG2909 MalT ATP-dependent tra 56.5 57 0.0012 34.3 8.3 88 214-314 460-553 (894)
457 cd02656 MIT MIT: domain contai 56.3 36 0.00078 23.9 5.2 17 310-326 18-34 (75)
458 PF04212 MIT: MIT (microtubule 56.3 63 0.0014 22.2 8.1 25 302-326 9-33 (69)
459 PF01535 PPR: PPR repeat; Int 55.7 21 0.00045 19.5 3.2 25 267-291 3-27 (31)
460 cd09246 BRO1_Alix_like_1 Prote 55.3 1.9E+02 0.0041 27.3 13.5 120 207-326 106-275 (353)
461 smart00671 SEL1 Sel1-like repe 54.9 32 0.00069 19.6 4.1 28 300-327 3-34 (36)
462 cd09245 BRO1_UmRIM23-like Prot 54.7 1.5E+02 0.0032 28.8 10.6 30 298-327 296-325 (413)
463 cd02679 MIT_spastin MIT: domai 54.0 80 0.0017 22.7 8.0 45 310-354 20-74 (79)
464 KOG4563 Cell cycle-regulated h 53.3 37 0.0008 31.9 5.8 68 207-284 36-103 (400)
465 KOG2041 WD40 repeat protein [G 52.9 1E+02 0.0022 31.9 9.1 65 259-323 791-877 (1189)
466 PF07219 HemY_N: HemY protein 52.8 33 0.00071 26.2 4.8 34 207-240 54-87 (108)
467 COG5187 RPN7 26S proteasome re 52.2 1.1E+02 0.0023 28.2 8.4 103 211-327 114-221 (412)
468 PRK11619 lytic murein transgly 51.7 63 0.0014 33.3 8.0 54 273-326 321-374 (644)
469 KOG4014 Uncharacterized conser 51.2 85 0.0018 26.8 7.1 17 278-294 182-198 (248)
470 PF04053 Coatomer_WDAD: Coatom 51.0 1.8E+02 0.004 28.4 10.7 32 296-327 345-376 (443)
471 cd02678 MIT_VPS4 MIT: domain c 49.6 90 0.0019 21.9 7.0 23 304-326 12-34 (75)
472 KOG3677 RNA polymerase I-assoc 49.5 21 0.00046 34.1 3.8 55 268-326 239-300 (525)
473 smart00101 14_3_3 14-3-3 homol 49.4 51 0.0011 29.4 6.1 54 228-291 144-198 (244)
474 COG4649 Uncharacterized protei 48.6 70 0.0015 27.1 6.2 77 217-311 137-213 (221)
475 cd00280 TRFH Telomeric Repeat 48.3 1.1E+02 0.0025 25.9 7.5 49 270-319 117-165 (200)
476 KOG0687 26S proteasome regulat 45.6 1.9E+02 0.004 27.1 8.9 104 211-326 103-209 (393)
477 PF08626 TRAPPC9-Trs120: Trans 45.3 3.3E+02 0.0071 30.5 12.7 36 208-243 238-273 (1185)
478 PF07219 HemY_N: HemY protein 45.2 1.3E+02 0.0029 22.7 7.4 51 263-313 58-108 (108)
479 TIGR00756 PPR pentatricopeptid 45.1 48 0.001 18.3 3.7 25 267-291 3-27 (35)
480 PF08969 USP8_dimer: USP8 dime 44.1 52 0.0011 25.4 4.8 48 202-249 28-75 (115)
481 PRK15326 type III secretion sy 43.7 1.2E+02 0.0027 21.8 6.0 30 315-344 24-53 (80)
482 cd09248 BRO1_Rhophilin_1 Prote 43.5 3E+02 0.0066 26.3 12.2 67 206-274 100-175 (384)
483 KOG1914 mRNA cleavage and poly 42.9 1.8E+02 0.0039 29.2 8.9 69 288-357 10-78 (656)
484 KOG2709 Uncharacterized conser 42.9 96 0.0021 29.8 6.9 62 298-359 22-95 (560)
485 PF13041 PPR_2: PPR repeat fam 42.7 52 0.0011 20.7 3.9 27 266-292 5-31 (50)
486 COG5107 RNA14 Pre-mRNA 3'-end 42.0 1.2E+02 0.0026 29.6 7.5 64 259-325 297-360 (660)
487 KOG2114 Vacuolar assembly/sort 41.8 1.9E+02 0.004 30.6 9.2 81 262-348 366-447 (933)
488 cd09244 BRO1_Rhophilin Protein 41.5 2.9E+02 0.0064 26.1 10.1 65 207-273 101-174 (350)
489 PF05053 Menin: Menin; InterP 41.2 32 0.00069 34.3 3.7 14 227-240 275-288 (618)
490 PF04190 DUF410: Protein of un 40.2 2.8E+02 0.006 24.9 9.6 97 211-321 9-113 (260)
491 KOG4014 Uncharacterized conser 40.2 2.4E+02 0.0052 24.2 10.2 95 212-328 68-198 (248)
492 cd09242 BRO1_ScBro1_like Prote 40.0 3.2E+02 0.007 25.7 10.9 118 208-327 103-273 (348)
493 PF04010 DUF357: Protein of un 39.8 47 0.001 23.6 3.5 38 202-239 25-62 (75)
494 KOG1920 IkappaB kinase complex 39.2 2.8E+02 0.0061 30.5 10.3 25 267-291 955-979 (1265)
495 KOG3677 RNA polymerase I-assoc 39.0 58 0.0013 31.3 4.9 74 268-341 276-352 (525)
496 PF13812 PPR_3: Pentatricopept 38.8 71 0.0015 17.7 3.9 26 266-291 3-28 (34)
497 KOG3616 Selective LIM binding 38.8 1.1E+02 0.0023 31.9 6.9 28 298-325 882-909 (1636)
498 PF02561 FliS: Flagellar prote 38.5 1.9E+02 0.0041 22.5 7.4 67 208-274 25-93 (122)
499 PF12739 TRAPPC-Trs85: ER-Golg 38.3 3.7E+02 0.008 26.0 10.6 102 214-327 210-329 (414)
500 KOG1811 Predicted Zn2+-binding 38.2 3.6E+02 0.0078 27.5 10.2 66 259-330 554-619 (1141)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-86 Score=585.97 Aligned_cols=358 Identities=53% Similarity=0.813 Sum_probs=334.2
Q ss_pred CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
||+|||||+|||+++|||+||||.|+||+||+||+.||+|.+|.+..+|++|+|+|+.|||||++|||||||++.++|+|
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG 87 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG 87 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence 89999999999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
|.||||.+|+||+|.++|+++++|||||.||||||||||||+.++|||||+|+|||+||+|.+||+.|+++.++....|.
T Consensus 88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cceEeccccccCCC----CCCCCCCCCCCCCCCCCCCCCCCCC-cCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHH
Q 018098 163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQT-PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK 237 (361)
Q Consensus 163 ~~v~I~~~~~l~~~----~~~~l~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~ 237 (361)
.+|.|.+||++... ..+.+...+.++|.++++|++...+ ..+....++.++..++.|+..+++++|..|...|.+
T Consensus 168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k 247 (372)
T KOG0546|consen 168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK 247 (372)
T ss_pred cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence 99999999999877 6777777899999999999776553 445667777889999999999999999999999999
Q ss_pred HHhhhccccccCCCCccc--hhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHH
Q 018098 238 ALRYLDICWEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315 (361)
Q Consensus 238 al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~ 315 (361)
+++++.. ++.....+.. ...+......++.|++.|-++++.+..|+..+..+++.++...+++|++++++..+.+++
T Consensus 248 ~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~ 326 (372)
T KOG0546|consen 248 ALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD 326 (372)
T ss_pred Hhhhhcc-cccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh
Confidence 9999887 3433333322 244667777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018098 316 AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361 (361)
Q Consensus 316 ~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 361 (361)
+|+++++.+....|++..+...+......+.++++++++.+.+||+
T Consensus 327 ~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 327 EALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred hhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999985
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-57 Score=366.65 Aligned_cols=167 Identities=63% Similarity=1.060 Sum_probs=160.0
Q ss_pred CeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhc-cCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 4 ~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~-~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
.+|||||.+++++.|||+|.||+..+|+||+||+.||. +.++.| |.|+.||||||+|||||||++.++|+|
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence 37999999999999999999999999999999999999 665554 999999999999999999999999999
Q ss_pred CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
+.||||.+|+|||+.|+|++||+|||||.|||||||||||++...|||||+|+|||+|++||+++++|++..++..+.|.
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeccccccCCCCC
Q 018098 163 ADVTITDCGEIPEGAD 178 (361)
Q Consensus 163 ~~v~I~~~~~l~~~~~ 178 (361)
.++.|.+|+.+.....
T Consensus 192 e~v~I~~~g~l~~~~~ 207 (217)
T KOG0880|consen 192 EDVVIANCGELPVEYL 207 (217)
T ss_pred ccEEEeecCcccccch
Confidence 9999999998865543
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-56 Score=336.50 Aligned_cols=167 Identities=58% Similarity=0.988 Sum_probs=161.4
Q ss_pred CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
||+|||||+|+|.++|||.||||.|++|+|++||++.|++.-- ..|+|+-|+++.|||||++|||||||+..++|+|
T Consensus 10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r---~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG 86 (177)
T KOG0879|consen 10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR---KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG 86 (177)
T ss_pred CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc---cCCccccccccchHHHhhhheeccCceecCCCce
Confidence 8999999999999999999999999999999999999998621 3588889999999999999999999999999999
Q ss_pred CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098 83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
..||||.+|+|||+.++|++||+|||||+|+++||+|||||...+.+||++|+|||+|++|+.++++|+++++..+.+|.
T Consensus 87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK 166 (177)
T KOG0879|consen 87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK 166 (177)
T ss_pred EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeccccc
Q 018098 163 ADVTITDCGE 172 (361)
Q Consensus 163 ~~v~I~~~~~ 172 (361)
.+|.|..|+.
T Consensus 167 l~v~i~qCGe 176 (177)
T KOG0879|consen 167 LPVVIVQCGE 176 (177)
T ss_pred CcEEEeeccc
Confidence 9999999985
No 4
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-50 Score=334.06 Aligned_cols=164 Identities=59% Similarity=0.993 Sum_probs=160.0
Q ss_pred CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.||.||+++.|++...|||+++|..|..|+|++||+.||++..|+| |+|+.||||||.||+||||++.++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 67999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~ 160 (361)
+||.||||.+|.||||.|+|..+|+|||||+|+|+|||||||++....||||+|+|||.|++|+++++.+++..+.. +.
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk 284 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK 284 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877 89
Q ss_pred cccceEecccccc
Q 018098 161 PIADVTITDCGEI 173 (361)
Q Consensus 161 P~~~v~I~~~~~l 173 (361)
|...|.|..|+.+
T Consensus 285 p~qkv~i~~cge~ 297 (298)
T KOG0111|consen 285 PQQKVKIVECGEI 297 (298)
T ss_pred cceEEEEEecccc
Confidence 9999999999875
No 5
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-49 Score=299.16 Aligned_cols=153 Identities=52% Similarity=0.837 Sum_probs=146.5
Q ss_pred CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
-|.|+++++ .|.|++|||-..||.||.||..|++.+ ||+|+.|||||++||||||||+ ++|+|
T Consensus 9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG 71 (164)
T KOG0881|consen 9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG 71 (164)
T ss_pred CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence 478999988 799999999999999999999999998 9999999999999999999998 89999
Q ss_pred CCccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098 83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP 161 (361)
Q Consensus 83 ~~~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P 161 (361)
|.||||.+|+||-. .|+|...|+|||||.|||+|||||||++.|.+||||+|++||+|..||+++..+-.+.+++.++|
T Consensus 72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP 151 (164)
T KOG0881|consen 72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP 151 (164)
T ss_pred ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence 99999999999965 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEeccccc
Q 018098 162 IADVTITDCGE 172 (361)
Q Consensus 162 ~~~v~I~~~~~ 172 (361)
..+++|..+..
T Consensus 152 i~~~kIika~~ 162 (164)
T KOG0881|consen 152 IDEVKIIKAYP 162 (164)
T ss_pred ccceeeEeeec
Confidence 99999987654
No 6
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=9.3e-48 Score=334.99 Aligned_cols=175 Identities=38% Similarity=0.630 Sum_probs=159.9
Q ss_pred CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecC-cEEEeCCCCCCCC
Q 018098 2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKG-FMIQGGDISAGDG 80 (361)
Q Consensus 2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~-~~iq~G~~~~~~~ 80 (361)
++|+|||||+|+|+++|+|+||||.+.||+||+||++||++.++.+...|..++|+|+.||||+++ |+|||||+..
T Consensus 51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~--- 127 (249)
T PTZ00221 51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS--- 127 (249)
T ss_pred CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence 489999999999999999999999999999999999999988776555566667999999999986 8999999763
Q ss_pred CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~ 160 (361)
++.++||..|+||++.++|+++|+|+|++.|||++||||||++.++|+||++|+|||+|++||++|++|++++++..+.
T Consensus 128 -~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~gr 206 (249)
T PTZ00221 128 -FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGR 206 (249)
T ss_pred -CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence 2457789999999999999999999999999999999999999999999999999999999999999999999887799
Q ss_pred cccceEeccccccCCCCCCC
Q 018098 161 PIADVTITDCGEIPEGADDG 180 (361)
Q Consensus 161 P~~~v~I~~~~~l~~~~~~~ 180 (361)
|..+|+|.+|+++..+.+..
T Consensus 207 P~~~V~I~~Cgvl~~~~p~~ 226 (249)
T PTZ00221 207 PLLPVTVSFCGALTGEKPPG 226 (249)
T ss_pred CCCCeEEEECeEecCCCCCc
Confidence 99999999999997664433
No 7
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=8e-47 Score=315.89 Aligned_cols=164 Identities=66% Similarity=1.111 Sum_probs=153.5
Q ss_pred CeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCC
Q 018098 4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGG 83 (361)
Q Consensus 4 ~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~ 83 (361)
|+||||++++|++.|+|+||||.+.||.||+||++||++.++.+. +..+|+++.||||+|+|+|||||+..++|+++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 899999999999999999999999999999999999997554321 33489999999999999999999887788999
Q ss_pred CccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcccc
Q 018098 84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA 163 (361)
Q Consensus 84 ~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~ 163 (361)
.++||..|++|+..++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||++++|++++++ ++.|..
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~ 156 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK 156 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence 9999999999998999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred ceEecccc
Q 018098 164 DVTITDCG 171 (361)
Q Consensus 164 ~v~I~~~~ 171 (361)
+|+|.+|+
T Consensus 157 ~i~I~~cG 164 (164)
T cd01926 157 KVVIADCG 164 (164)
T ss_pred CeEEEECC
Confidence 99999986
No 8
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=5e-47 Score=321.56 Aligned_cols=170 Identities=58% Similarity=0.948 Sum_probs=156.7
Q ss_pred CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.||+|||||++++++.|+|+||||.+.+|+||+||+.||+++... .|.+..|+++.||||+|+|+|||||+..++|
T Consensus 16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g 92 (186)
T PLN03149 16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92 (186)
T ss_pred CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence 4589999999999999999999999999999999999999876321 1222359999999999999999999877889
Q ss_pred CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEE-eChHHHHHHhccCCCCCC
Q 018098 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND 159 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~-~g~~vl~~i~~~~~~~~~ 159 (361)
+|+.++||..|++|++.++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|+ +||++|++|+++.++..+
T Consensus 93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~ 172 (186)
T PLN03149 93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN 172 (186)
T ss_pred CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence 9999999999999998899999999999999999999999999999999999999999999 799999999999998889
Q ss_pred ccccceEecccccc
Q 018098 160 CPIADVTITDCGEI 173 (361)
Q Consensus 160 ~P~~~v~I~~~~~l 173 (361)
.|..+|+|.+|+++
T Consensus 173 ~P~~~i~I~~cG~~ 186 (186)
T PLN03149 173 RPKLACVISECGEM 186 (186)
T ss_pred CCcCCeEEEeCEeC
Confidence 99999999999864
No 9
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=2.1e-46 Score=317.57 Aligned_cols=170 Identities=62% Similarity=0.997 Sum_probs=156.9
Q ss_pred CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG 80 (361)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~ 80 (361)
|.||+||||++++|++.|+|+||||.+.||.||+||++||++..... .|+..+|+|+.||||+|+++|||||+..++|
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 45899999999999999999999999999999999999999764322 2444599999999999999999999987788
Q ss_pred CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098 81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160 (361)
Q Consensus 81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~ 160 (361)
+++.++||..+++|+..++|.++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||+|++|+...+. .+.
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~ 169 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY 169 (183)
T ss_pred CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence 9999999999999988999999999999999999999999999999999999999999999999999999998875 478
Q ss_pred cccceEecccccc
Q 018098 161 PIADVTITDCGEI 173 (361)
Q Consensus 161 P~~~v~I~~~~~l 173 (361)
|..+|.|.+|+++
T Consensus 170 P~~~v~I~~cg~~ 182 (183)
T PTZ00060 170 PKKPVVVTDCGEL 182 (183)
T ss_pred CcCCeEEEEeEEc
Confidence 9999999999986
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-46 Score=300.57 Aligned_cols=144 Identities=52% Similarity=0.825 Sum_probs=130.2
Q ss_pred CeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCC
Q 018098 14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED 93 (361)
Q Consensus 14 ~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~ 93 (361)
.+..|+|+||||++.||+||+||+.||+.+ ||+|+.||||||+|||||||++.++|+|++ +.+|++
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~ 70 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD 70 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence 466999999999999999999999999977 999999999999999999999987799888 488999
Q ss_pred CccccCCCC--ceEEEeecCC-CCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCC----CccccceE
Q 018098 94 ENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVT 166 (361)
Q Consensus 94 e~~~~~~~~--~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~----~~P~~~v~ 166 (361)
|++...|++ +|+|||||.+ |||+||||||++.+.|+||++|+|||+|++|||+|++|++..+... +.|..++.
T Consensus 71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~ 150 (158)
T COG0652 71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK 150 (158)
T ss_pred cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence 999888877 9999999999 9999999999999999999999999999999999999999877653 34546666
Q ss_pred ecccc
Q 018098 167 ITDCG 171 (361)
Q Consensus 167 I~~~~ 171 (361)
|....
T Consensus 151 i~~~~ 155 (158)
T COG0652 151 ILSVK 155 (158)
T ss_pred Eeeee
Confidence 65544
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=5.3e-43 Score=290.86 Aligned_cols=152 Identities=47% Similarity=0.775 Sum_probs=142.5
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||++ ++|+++.+++|..+++|
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E 73 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE 73 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcc
Confidence 34899999999999999999999999987 9999999999999999999986 67889999999999999
Q ss_pred cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecccccc
Q 018098 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173 (361)
Q Consensus 95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~l 173 (361)
.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|++++++.++.|..+|+|.++.++
T Consensus 74 ~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 74 FKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 54 67899999999999999999999999999999999999999999999999999999999888999999999999998
Q ss_pred CCCCC
Q 018098 174 PEGAD 178 (361)
Q Consensus 174 ~~~~~ 178 (361)
..+++
T Consensus 154 ~dpf~ 158 (159)
T cd01923 154 VDPFE 158 (159)
T ss_pred eCCCC
Confidence 76643
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4.2e-43 Score=289.34 Aligned_cols=148 Identities=49% Similarity=0.824 Sum_probs=139.1
Q ss_pred EEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCc
Q 018098 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGES 85 (361)
Q Consensus 6 v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (361)
|.|+++ .|+|+||||.+.||+||+||+.||+++ ||+|+.||||+|+|+|||||+. ++|+++.+
T Consensus 3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~ 65 (153)
T cd01928 3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGES 65 (153)
T ss_pred EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence 666655 899999999999999999999999987 9999999999999999999986 67888899
Q ss_pred cCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccc
Q 018098 86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD 164 (361)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~ 164 (361)
+||.+|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++|||++++|++++++..+.|..+
T Consensus 66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~ 145 (153)
T cd01928 66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE 145 (153)
T ss_pred cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence 99999999986 57899999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eEeccc
Q 018098 165 VTITDC 170 (361)
Q Consensus 165 v~I~~~ 170 (361)
|+|.++
T Consensus 146 i~I~~~ 151 (153)
T cd01928 146 IRIKDV 151 (153)
T ss_pred eEEEEe
Confidence 999876
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=5.6e-43 Score=287.23 Aligned_cols=143 Identities=58% Similarity=0.882 Sum_probs=135.7
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||+.||+++ ||+|+.||||+|||+|||||+. ++|+++.++||..|++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 71 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE 71 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence 45899999999999999999999999987 9999999999999999999986 67889999999999999
Q ss_pred cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecc
Q 018098 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (361)
Q Consensus 95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~ 169 (361)
.. .++|.++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|..+|+|.+
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 76 7889999999999999999999999999999999999999999999999999999999988899999999975
No 14
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-43 Score=288.16 Aligned_cols=164 Identities=60% Similarity=1.012 Sum_probs=155.6
Q ss_pred CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEE---eecCcEEEeCCCCC
Q 018098 1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR---VIKGFMIQGGDISA 77 (361)
Q Consensus 1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~r---v~~~~~iq~G~~~~ 77 (361)
|.||.||||++++++++|+++++||.|+.|+|++||..||++.++++ |+++.||| .+++||+||||++.
T Consensus 1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~ 72 (167)
T KOG0865|consen 1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC 72 (167)
T ss_pred CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence 78999999999999999999999999999999999999999887775 99999999 44479999999999
Q ss_pred CCCCCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCC
Q 018098 78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157 (361)
Q Consensus 78 ~~~~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~ 157 (361)
++|+|+.||||++|+||++.++|..||+|||||.|||+++|||||++....||||+|+|||+|.+||+++++++...+..
T Consensus 73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~ 152 (167)
T KOG0865|consen 73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN 152 (167)
T ss_pred cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976665
Q ss_pred CCccccceEecccccc
Q 018098 158 NDCPIADVTITDCGEI 173 (361)
Q Consensus 158 ~~~P~~~v~I~~~~~l 173 (361)
+.+...+.|.+|+.+
T Consensus 153 -gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 153 -GKTSKKITIADCGQL 167 (167)
T ss_pred -CcccccEEEecCCcC
Confidence 889999999999864
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.9e-42 Score=283.15 Aligned_cols=141 Identities=57% Similarity=0.861 Sum_probs=133.1
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+. ++|.++.++||.+|++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e 71 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE 71 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence 56899999999999999999999999987 9999999999999999999986 67888899999999999
Q ss_pred c-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEec
Q 018098 95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168 (361)
Q Consensus 95 ~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~ 168 (361)
. ..++|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++|||+|++|++++++ ++.|..+|+|.
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~ 145 (146)
T cd01922 72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL 145 (146)
T ss_pred cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence 5 4789999999999999999999999999999999999999999999999999999999998 68999999985
No 16
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.9e-42 Score=288.76 Aligned_cols=153 Identities=40% Similarity=0.672 Sum_probs=140.2
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCC------
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYG------ 88 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------ 88 (361)
|+.|+|+||||.+.||+||+||++||+++ ||+|+.||||+|+|+|||||+. ++|+++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~ 71 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ 71 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence 45899999999999999999999999987 9999999999999999999986 67888888775
Q ss_pred -CCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCC-CCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccce
Q 018098 89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV 165 (361)
Q Consensus 89 -~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~-~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v 165 (361)
..|++|.. .++|+++|+|+||+.++++++|||||++.+ .|+||++|+|||+|++||++|++|+.+.++..+.|..+|
T Consensus 72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i 151 (166)
T cd01921 72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI 151 (166)
T ss_pred CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence 35777764 678999999999999999999999999975 799999999999999999999999999998889999999
Q ss_pred EeccccccCCCCCC
Q 018098 166 TITDCGEIPEGADD 179 (361)
Q Consensus 166 ~I~~~~~l~~~~~~ 179 (361)
+|..+.++..++++
T Consensus 152 ~I~~~~i~~~pf~~ 165 (166)
T cd01921 152 RIKHTHILDDPFPD 165 (166)
T ss_pred EEEEEEEECCCCCC
Confidence 99999999877665
No 17
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-43 Score=311.21 Aligned_cols=150 Identities=46% Similarity=0.790 Sum_probs=144.7
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
++.|.+-|||+.|.+|.+|+||+.||+.+ ||+|+.|||-|.+||||||||+ |+|+||.||+|.+|.||
T Consensus 284 Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDE 351 (518)
T KOG0883|consen 284 TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE 351 (518)
T ss_pred ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccc
Confidence 56999999999999999999999999998 9999999999999999999998 89999999999999999
Q ss_pred cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecccccc
Q 018098 95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173 (361)
Q Consensus 95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~l 173 (361)
.. .++|+.+|+|||||+|||||||||||+..++.|||++|++||+|+-|+++|.+|+++++++.+.|..+|.|..+.+.
T Consensus 352 f~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 352 FCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF 431 (518)
T ss_pred cCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence 75 79999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCC
Q 018098 174 PEG 176 (361)
Q Consensus 174 ~~~ 176 (361)
..+
T Consensus 432 VdP 434 (518)
T KOG0883|consen 432 VDP 434 (518)
T ss_pred eCc
Confidence 655
No 18
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-42 Score=255.98 Aligned_cols=154 Identities=47% Similarity=0.739 Sum_probs=143.5
Q ss_pred EEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCc
Q 018098 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGES 85 (361)
Q Consensus 6 v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (361)
|-+.+. .|+|.||||-+.+|++|+||+.||... ||+|+.|||-+||||+|+||++ .+|.||.|
T Consensus 3 vtlht~-----~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~s 65 (161)
T KOG0884|consen 3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNS 65 (161)
T ss_pred EEEeec-----cCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCcc
Confidence 566655 799999999999999999999999887 9999999999999999999997 68999999
Q ss_pred cCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCC-Ccccc
Q 018098 86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIA 163 (361)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~-~~P~~ 163 (361)
|+|.+|+||.. -++|+.+|++||||.|||+|+|||||+.+..||||-+|+|||+|++|+|.+++|+.+++++. .+|..
T Consensus 66 iwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~ 145 (161)
T KOG0884|consen 66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN 145 (161)
T ss_pred ccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccch
Confidence 99999999986 59999999999999999999999999999999999999999999999999999999999886 89999
Q ss_pred ceEeccccccCCC
Q 018098 164 DVTITDCGEIPEG 176 (361)
Q Consensus 164 ~v~I~~~~~l~~~ 176 (361)
++.|.+...-..+
T Consensus 146 ~~~ik~itihanp 158 (161)
T KOG0884|consen 146 DVHIKDITIHANP 158 (161)
T ss_pred heeeeeeEEecCc
Confidence 9999887665433
No 19
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-42 Score=309.88 Aligned_cols=150 Identities=55% Similarity=0.814 Sum_probs=142.8
Q ss_pred EeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCC
Q 018098 11 SIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLK 90 (361)
Q Consensus 11 ~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~ 90 (361)
+|-.|++|+|.|.||++.||+||+||-..|+.+ ||+|..|||||+|||||+|||. |+|+||.||+|..
T Consensus 407 aiihtt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~d 474 (558)
T KOG0882|consen 407 AIIHTTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKD 474 (558)
T ss_pred eEEEecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCccccccc
Confidence 444567999999999999999999999999988 9999999999999999999997 8999999999999
Q ss_pred CCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecc
Q 018098 91 FEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (361)
Q Consensus 91 ~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~ 169 (361)
|+||.. .|+|++|.+|||||.|||+||||||||+.+.|||||+|+|||+|..||+|++.|+++.++..++|..++.|.+
T Consensus 475 fedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin 554 (558)
T KOG0882|consen 475 FEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN 554 (558)
T ss_pred chhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence 999986 7999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 018098 170 CGE 172 (361)
Q Consensus 170 ~~~ 172 (361)
..+
T Consensus 555 isv 557 (558)
T KOG0882|consen 555 ISV 557 (558)
T ss_pred Eec
Confidence 643
No 20
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.4e-40 Score=279.36 Aligned_cols=159 Identities=40% Similarity=0.689 Sum_probs=145.6
Q ss_pred eEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCC
Q 018098 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGE 84 (361)
Q Consensus 5 ~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (361)
.|.|+++ .|+|+||||.+.+|+||+||+.||+.+ ||+|+.||||+|+|+|||||+. ++|+++.
T Consensus 7 ~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~ 69 (171)
T cd01925 7 KVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69 (171)
T ss_pred EEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence 5667665 899999999999999999999999987 9999999999999999999986 6789999
Q ss_pred ccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEe-ChHHHHHHhccCCCCCCccc
Q 018098 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~-g~~vl~~i~~~~~~~~~~P~ 162 (361)
++||..|++|.. .++|+++|+|+||+.++++++|||||++++.|+||++|+|||+|+. +++++++|+.+.++.++.|.
T Consensus 70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~ 149 (171)
T cd01925 70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV 149 (171)
T ss_pred ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence 999999999976 5789999999999999999999999999999999999999999984 56789999999998888999
Q ss_pred cceEeccccccCCCCCCC
Q 018098 163 ADVTITDCGEIPEGADDG 180 (361)
Q Consensus 163 ~~v~I~~~~~l~~~~~~~ 180 (361)
.+++|.+|.++..++++-
T Consensus 150 ~~i~I~~~~i~~~pf~~~ 167 (171)
T cd01925 150 YPPKITSVEVLENPFDDI 167 (171)
T ss_pred CCeEEEEEEEEcCCchhh
Confidence 999999999987766554
No 21
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.1e-39 Score=277.27 Aligned_cols=152 Identities=32% Similarity=0.500 Sum_probs=133.3
Q ss_pred CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098 3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG 82 (361)
Q Consensus 3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~ 82 (361)
+++|.|+++ .|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+||||||++....+
T Consensus 28 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~-- 89 (190)
T PRK10903 28 DPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ-- 89 (190)
T ss_pred CcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence 567777765 899999999999999999999999987 99999999999999999999764322
Q ss_pred CCccCCCCCCCCccccCCCCceEEEeecCC-CCCCCcceEEecCCCCCCCC-----CceEEeEEEeChHHHHHHhccCCC
Q 018098 83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG 156 (361)
Q Consensus 83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~g~~vl~~i~~~~~~ 156 (361)
.+.++.+|++|.....|+.+|+|+||+.+ ||+++|||||++++.++||+ +|+|||+|++|||++++|++++++
T Consensus 90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~ 168 (190)
T PRK10903 90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH 168 (190)
T ss_pred -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence 23346778888766667889999999976 99999999999999999984 899999999999999999999987
Q ss_pred C----CCccccceEecccccc
Q 018098 157 D----NDCPIADVTITDCGEI 173 (361)
Q Consensus 157 ~----~~~P~~~v~I~~~~~l 173 (361)
. .+.|..+|.|.+|.++
T Consensus 169 ~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 169 DVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCcccCCeEEEEEEEe
Confidence 6 4689999999998765
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=8.7e-39 Score=265.97 Aligned_cols=144 Identities=35% Similarity=0.585 Sum_probs=123.8
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+|+||.+.||+||+||++||+.+ ||+|+.||||+|+|+||||++..+.+. +.++..|++|
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e 71 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE 71 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence 45899999999999999999999999987 999999999999999999997644332 2246678888
Q ss_pred ccccCCCCceEEEeecCC-CCCCCcceEEecCCCCCCC-------C-CceEEeEEEeChHHHHHHhccCCCCC----Ccc
Q 018098 95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCP 161 (361)
Q Consensus 95 ~~~~~~~~~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld-------~-~~~vfG~V~~g~~vl~~i~~~~~~~~----~~P 161 (361)
.....++.+|+||||+.+ |++++|||||++.+.++|| + +|+|||+|++|||+|++|+.+.++.+ +.|
T Consensus 72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P 151 (164)
T PRK10791 72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP 151 (164)
T ss_pred ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence 544445589999999986 9999999999999988776 3 79999999999999999999999763 689
Q ss_pred ccceEeccccc
Q 018098 162 IADVTITDCGE 172 (361)
Q Consensus 162 ~~~v~I~~~~~ 172 (361)
..+|.|.++.+
T Consensus 152 ~~~v~I~~~~i 162 (164)
T PRK10791 152 KEDVIIESVTV 162 (164)
T ss_pred CCCeEEEEEEE
Confidence 99999998754
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=4.3e-38 Score=260.34 Aligned_cols=141 Identities=37% Similarity=0.523 Sum_probs=123.2
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+||||.+.||+||+||++||+.+ ||+|+.||||+|+|+|||||+....+. ..++.++++|
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e 69 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE 69 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence 45899999999999999999999999987 999999999999999999998744322 2346678888
Q ss_pred ccccCCCCceEEEeecCC-CCCCCcceEEecCCCCCCCC-----CceEEeEEEeChHHHHHHhccCCCCC----Cccccc
Q 018098 95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD 164 (361)
Q Consensus 95 ~~~~~~~~~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~g~~vl~~i~~~~~~~~----~~P~~~ 164 (361)
.....|+++|+|+||+.+ |++++|||||++.+.|+||+ +|+|||+|++||++|++|++++++.. +.|..+
T Consensus 70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~ 149 (155)
T cd01920 70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD 149 (155)
T ss_pred ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence 666667899999999976 89999999999999999995 79999999999999999999999764 578888
Q ss_pred eEecc
Q 018098 165 VTITD 169 (361)
Q Consensus 165 v~I~~ 169 (361)
|.|.+
T Consensus 150 v~i~~ 154 (155)
T cd01920 150 VIIES 154 (155)
T ss_pred eEEEE
Confidence 87764
No 24
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.3e-36 Score=251.90 Aligned_cols=126 Identities=34% Similarity=0.552 Sum_probs=111.0
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC-------------
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT------------- 81 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~------------- 81 (361)
|+.|+|+|+||.+.||+||+||++||+.+ ||+|+.||||+++|||||||+... ++
T Consensus 4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~ 71 (176)
T cd01924 4 TDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTI 71 (176)
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccc
Confidence 57999999999999999999999999987 999999999999999999998643 21
Q ss_pred --------CCCccCCCCCC-----CCccccCCCCceEEEeecCC--CCCCCcceEEecC-------CCCCCCCCceEEeE
Q 018098 82 --------GGESIYGLKFE-----DENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR 139 (361)
Q Consensus 82 --------~~~~~~~~~~~-----~e~~~~~~~~~g~l~~~~~~--~~~~~sqF~I~~~-------~~~~ld~~~~vfG~ 139 (361)
.+.++|+.++. +++..+.|+.+|+|+||+.+ |||++|||||++. +.|+||++|+|||+
T Consensus 72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~ 151 (176)
T cd01924 72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151 (176)
T ss_pred cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence 13356666553 45667889999999999988 6999999999998 78999999999999
Q ss_pred EEeChHHHHHHhc
Q 018098 140 VIKGMGVVRSIEH 152 (361)
Q Consensus 140 V~~g~~vl~~i~~ 152 (361)
|++|||+|++|+.
T Consensus 152 VveG~dvl~~I~~ 164 (176)
T cd01924 152 VTDGLDILRELKV 164 (176)
T ss_pred EecCHHHHHhhcC
Confidence 9999999999975
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.2e-35 Score=245.10 Aligned_cols=141 Identities=61% Similarity=0.944 Sum_probs=128.8
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
|+.|+|+|+||.+.+|++|+||++||+++ +|+|+.||||+|+++|||||+....+.+ +.++..+++|
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E 70 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDE 70 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCc
Confidence 34799999999999999999999999988 9999999999999999999987543322 4567889999
Q ss_pred ccccC-CCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEec
Q 018098 95 NFELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168 (361)
Q Consensus 95 ~~~~~-~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~ 168 (361)
..... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|++++++|...+++.++.|..+|+|.
T Consensus 71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 87655 899999999999999999999999999999999999999999999999999999999889999999985
No 26
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=266.43 Aligned_cols=160 Identities=39% Similarity=0.681 Sum_probs=146.1
Q ss_pred eEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCC
Q 018098 5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGE 84 (361)
Q Consensus 5 ~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~ 84 (361)
.|.|.++ .|+|.|||+...||++|.||++||..+ ||+|+.|||++|||.+|||||+ ++|+||.
T Consensus 14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge 76 (439)
T KOG0885|consen 14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE 76 (439)
T ss_pred eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence 5666665 899999999999999999999999998 9999999999999999999998 7999999
Q ss_pred ccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChH--HHHHHhccCCCCCCcc
Q 018098 85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG--VVRSIEHVMTGDNDCP 161 (361)
Q Consensus 85 ~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~--vl~~i~~~~~~~~~~P 161 (361)
||||.+|.+|.. .++++++|+|+|||.+-+.||||||+|++++|+|++++++||+|+ |.. .+..|..+.++.+++|
T Consensus 77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVt-GdtIYn~lri~e~eida~~Rp 155 (439)
T KOG0885|consen 77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVT-GDTIYNMLRISEVEIDADDRP 155 (439)
T ss_pred ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeec-chhhhhhhhhcccccccccCC
Confidence 999999999975 688999999999999999999999999999999999999999998 443 4567888888888999
Q ss_pred ccceEeccccccCCCCCCCCC
Q 018098 162 IADVTITDCGEIPEGADDGIS 182 (361)
Q Consensus 162 ~~~v~I~~~~~l~~~~~~~l~ 182 (361)
..+..|.++.++..++.+..+
T Consensus 156 ~~p~kI~s~EV~~npFdDI~p 176 (439)
T KOG0885|consen 156 VDPPKIKSVEVLINPFDDIKP 176 (439)
T ss_pred CCccceeeeEeecCchhhcch
Confidence 999999999999877766544
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=3.1e-35 Score=245.10 Aligned_cols=151 Identities=50% Similarity=0.816 Sum_probs=131.4
Q ss_pred EEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCC-Cc
Q 018098 7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGG-ES 85 (361)
Q Consensus 7 ~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~-~~ 85 (361)
||+|++++ +|+|+||||.+.||.+|+||++||+.+ +|+|+.||||+|+++||||++....+.+. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78898766 999999999999999999999999987 89999999999999999999875433111 12
Q ss_pred cCCCCCCCCcc-ccCCCCceEEEeecCC--CCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098 86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162 (361)
Q Consensus 86 ~~~~~~~~e~~-~~~~~~~g~l~~~~~~--~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~ 162 (361)
..+.++++|.. ...++++|+|+|++.+ +++++|||||++.+.|+||++|+|||+|++|++++++|+..+++. .|.
T Consensus 68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~ 145 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK 145 (155)
T ss_dssp TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence 33556888874 3444599999999986 899999999999999999999999999999999999999988877 999
Q ss_pred cceEeccccc
Q 018098 163 ADVTITDCGE 172 (361)
Q Consensus 163 ~~v~I~~~~~ 172 (361)
.+|+|.+|++
T Consensus 146 ~~v~I~~cgv 155 (155)
T PF00160_consen 146 QDVTISSCGV 155 (155)
T ss_dssp STEEEEEEEE
T ss_pred CCeEEEEeEC
Confidence 9999999975
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=253.44 Aligned_cols=158 Identities=38% Similarity=0.666 Sum_probs=146.0
Q ss_pred EEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCc
Q 018098 6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGES 85 (361)
Q Consensus 6 v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~ 85 (361)
|.++++ +|+|||+||-+.+|.||.||++||+-+ ||+.+.||.|..+|.+|.|||+ |+|.||.|
T Consensus 3 VlieTt-----lGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~s 65 (479)
T KOG0415|consen 3 VLIETT-----LGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGES 65 (479)
T ss_pred EEEEee-----cccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcce
Confidence 677666 899999999999999999999999998 9999999999999999999998 69999999
Q ss_pred cCCC-------CCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCC-CCCCCCceEEeEEEeChHHHHHHhccCCC
Q 018098 86 IYGL-------KFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRT-SHLDGKHVVFGRVIKGMGVVRSIEHVMTG 156 (361)
Q Consensus 86 ~~~~-------~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~~~~~ 156 (361)
|||. .|+.|.. .++|.+.|+|||++.|.|.+|||||||++.. ..|||+|+|||+|.+|+++|.+|...-++
T Consensus 66 i~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD 145 (479)
T KOG0415|consen 66 IYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVD 145 (479)
T ss_pred eeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcC
Confidence 9854 3666654 6999999999999999999999999999875 58999999999999999999999999999
Q ss_pred CCCccccceEeccccccCCCCCCC
Q 018098 157 DNDCPIADVTITDCGEIPEGADDG 180 (361)
Q Consensus 157 ~~~~P~~~v~I~~~~~l~~~~~~~ 180 (361)
....|..+|+|...-++..+++++
T Consensus 146 ~~~rPykdIRI~HTiiLdDPFddp 169 (479)
T KOG0415|consen 146 PKNRPYKDIRIKHTIILDDPFDDP 169 (479)
T ss_pred CCCCcccceeeeeeEEecCCCCCc
Confidence 999999999999999998887766
No 29
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-25 Score=201.01 Aligned_cols=159 Identities=35% Similarity=0.474 Sum_probs=147.1
Q ss_pred CCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC
Q 018098 200 QTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279 (361)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~ 279 (361)
.+....++++..|...++.||.+|+.|+|..|...|++|++++.+....+ +++..........+++|+|.||+++++
T Consensus 196 s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~---~ee~~~~~~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 196 SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFD---EEEQKKAEALKLACHLNLAACYLKLKE 272 (397)
T ss_pred ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCC---HHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 36667778999999999999999999999999999999999887653333 355556777888999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
|.+|+..|+++|.++|.|+||+||+|+|+..+|+|+.|+.+|+++++++|+|+++...+..+..+++++.+++++.|++|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 018098 360 FQ 361 (361)
Q Consensus 360 f~ 361 (361)
|+
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 95
No 30
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=4e-22 Score=175.02 Aligned_cols=125 Identities=34% Similarity=0.485 Sum_probs=119.9
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~ 286 (361)
+....|+.++..||.+++.++|.+|+.+|++||. ++|.++..|+|+|.+|.+||+|+.|+++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence 5666899999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
|..||.+||.++|+|.|+|.+|+.+|++++|++.|++||+++|+|+.++..|..++..+.+.+
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999988877654
No 31
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.3e-21 Score=162.57 Aligned_cols=161 Identities=29% Similarity=0.333 Sum_probs=154.3
Q ss_pred CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
|.++.+++++....+...||.+|+.|+|.+|..+|..|+..+..+...+.+.+.+|..++....+++.|.++|++..++|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 77888999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
.++++.|..+|..+|.|.||||++|.|+....+.++|.++|.++++++|.- +.+...+..+..++.+.++.++-.+++|
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~km 326 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKM 326 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999984 5788899999999999999999999999
Q ss_pred cC
Q 018098 360 FQ 361 (361)
Q Consensus 360 f~ 361 (361)
|+
T Consensus 327 fs 328 (329)
T KOG0545|consen 327 FS 328 (329)
T ss_pred cC
Confidence 96
No 32
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=8.3e-19 Score=145.09 Aligned_cols=136 Identities=29% Similarity=0.392 Sum_probs=123.9
Q ss_pred hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al 284 (361)
....+..+..++..||.+|+.|+|.+|...|..||.+++.+ .......+|.|+|.|.++++.|+.||
T Consensus 88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~aI 154 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESAI 154 (271)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 33446679999999999999999999999999999988765 45567889999999999999999999
Q ss_pred HHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
.+|.+||+++|.+.+|+.|||.+|..+..|++|+.+|++.++++|....++..+.++...+.+..++-|
T Consensus 155 ~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 155 EDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK 223 (271)
T ss_pred HHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888877666544
No 33
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.3e-17 Score=150.90 Aligned_cols=117 Identities=28% Similarity=0.499 Sum_probs=112.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+...+..||.+|+.|+|..|+.+|++||. .+|.+..+|.|+|.||.+++.+..|+.+|+++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 477888999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
|+++|++.++|+|.|.++..+.+|+.|++.|.++++++|++.++...+.+|...+
T Consensus 419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999987764
No 34
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.68 E-value=6.3e-17 Score=144.03 Aligned_cols=121 Identities=27% Similarity=0.254 Sum_probs=114.8
Q ss_pred hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al 284 (361)
.+++++.+..+++.||.||++|.|++||.||.+++. +.|.+...+.|+|.+|++++.|..|.
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 566777888899999999999999999999999999 88989999999999999999999999
Q ss_pred HHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 285 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
.+|+.|+.+|..+.|||.|||.+...+|...+|..+++.+|+|.|++.+..+.++.+..
T Consensus 152 ~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 152 EDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999988888887755
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.1e-16 Score=142.57 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=109.0
Q ss_pred cCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChH
Q 018098 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (361)
Q Consensus 202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (361)
.+..+++.+.|..++.+||.+|+.|+|++||.+|++||+ +.|.-+..|.|+|.||..+|+|+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~------------------l~p~epiFYsNraAcY~~lgd~~ 166 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE------------------LCPDEPIFYSNRAACYESLGDWE 166 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh------------------cCCCCchhhhhHHHHHHHHhhHH
Confidence 455677788999999999999999999999999999999 66666789999999999999999
Q ss_pred HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Q 018098 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P--~~~~~~~~l~~~~~~~~~~ 348 (361)
+.+++|++||+++|+.+||++|||.++..+|++++|+.+..-. .+.. +|..+.-.+.++.......
T Consensus 167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~-ci~~~F~n~s~~~~~eR~Lkk~a~~ 234 (606)
T KOG0547|consen 167 KVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL-CILEGFQNASIEPMAERVLKKQAMK 234 (606)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH-HHhhhcccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754 4433 3555555555554444433
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=2.1e-15 Score=123.74 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=110.7
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..+...|..++..|+|++|+..|++++. ++|.+..+|.++|.++..+|++++|+..|+++++
T Consensus 25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 25 ETVYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3466789999999999999999999999 8899999999999999999999999999999999
Q ss_pred cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (361)
++|.++.+++++|.++..+|++++|+..|++++++.|+++..+..++.++..++.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888777654
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=2.3e-15 Score=141.90 Aligned_cols=118 Identities=25% Similarity=0.438 Sum_probs=112.6
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..++..|+.+|..|+|++|+.+|++||+ ++|.+..+|+++|.||+++|++++|+.++++||.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4577889999999999999999999999 8888899999999999999999999999999999
Q ss_pred cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
++|.++.+|+++|.+++.+|+|++|+..|+++++++|++..+...+..+..++...
T Consensus 65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998888654
No 38
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.2e-15 Score=135.45 Aligned_cols=134 Identities=27% Similarity=0.440 Sum_probs=118.3
Q ss_pred chHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHH
Q 018098 204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (361)
Q Consensus 204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (361)
+..-..+..+.++..||.+|+.|+|..|.++|+.||.+-+. -...++.+|.|+|.+..++|+..+|
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------------n~~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------------NKKTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------------ccchhHHHHHHhHhhhcccCCchhh
Confidence 34445567888999999999999999999999999983321 2335678999999999999999999
Q ss_pred HHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 284 l~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.+|+.|+.+||...|++.++|.|+..+++|++|.++|++|+++..+ .+++..+.+++..+++.+++.
T Consensus 307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999866 889999999999888776643
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.9e-15 Score=139.08 Aligned_cols=113 Identities=28% Similarity=0.420 Sum_probs=109.4
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+...+..||.+|..|+|+.|+.+|++||. ++|.+..+|.|++.||.++++|++|+++..+.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~ 63 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR 63 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence 45678899999999999999999999999 889999999999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
+++|+++|+|.|+|.++..+|+|++|+..|++.|+.+|+|+.....+.++.
T Consensus 64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999999999999988
No 40
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3e-14 Score=126.59 Aligned_cols=107 Identities=26% Similarity=0.412 Sum_probs=95.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.|..+++.||.+|+.++|..|+..|+++|.. .......++.+|.|||.|.+.+|+|..||.+|++|
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--------------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK--------------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--------------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999981 11134467889999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~ 331 (361)
+.++|++.|+++|-|.|++.+.++++|..+++..++++-..
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999999999999999998888877765433
No 41
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.55 E-value=1.2e-13 Score=112.13 Aligned_cols=117 Identities=11% Similarity=0.108 Sum_probs=104.8
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
..+.++..|..++..|++++|+..|+-... ++|.+...|+|||.|+..+|+|++|+..|.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456789999999999999999999999998 99999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
+.++|+++.++++.|.+++.+|+.+.|.+.|+.++.+.-.++.......+++..+
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999855554444444444433
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=2.1e-13 Score=110.49 Aligned_cols=118 Identities=15% Similarity=0.258 Sum_probs=109.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+.....+|..++..|++++|+..|++++. .+|.+..++.++|.++.+++++++|+..++++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688899999999999999999999998 77888999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
+.++|+++..++.+|.++..+|++++|+..|+++++++|++.........+...++
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887777777766554
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.48 E-value=8.1e-14 Score=132.63 Aligned_cols=125 Identities=22% Similarity=0.206 Sum_probs=111.2
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
-+.++.++||.+-..+.|++|+.+|.+|+. +.|+.+.++.|+|.+|..+|..+.||..|.+|
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra 312 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALN------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA 312 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHh------------------cCCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence 477899999999999999999999999998 88888889999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
|+++|+.+.||.++|.++...|+..+|.++|.+|+.+.|+.++...+|+.++.+....+.+-+
T Consensus 313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999999999999999999999999999999999999998888776665543
No 44
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=8.6e-13 Score=133.78 Aligned_cols=113 Identities=24% Similarity=0.329 Sum_probs=103.1
Q ss_pred CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098 201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+..+.++....+..+++.|+.+++.|+|++|+.+|++++. +.|. ...|.|+|.||.++|+|
T Consensus 116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~------------------~~p~-~~~~~n~a~~~~~l~~~ 176 (615)
T TIGR00990 116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE------------------CKPD-PVYYSNRAACHNALGDW 176 (615)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCc-hHHHHHHHHHHHHhCCH
Confidence 5566777778899999999999999999999999999998 4453 45799999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~ 332 (361)
++|+.+|++||+++|++.++|+++|.+|..+|++++|+.+|..++.+++.+.
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999888876544
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=9.5e-13 Score=121.26 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=101.1
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+..+|..+...|++++|+..|+++++ ++|.+..+|+++|.++..+|++++|+..++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467799999999999999999999999999 88889999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
++++|++..+++++|.++...|++++|+++|+++++++|+++.
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999873
No 46
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.44 E-value=4.7e-13 Score=127.53 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (361)
++|..+.+|.|+|.+|-.+|+...|++.+.+||.++|..+.|+.++|.+|...|+..+|++.|+.|+++.|+.+++..++
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 55555566666666666666666666666666666666666666666666666666666666666666666655555555
Q ss_pred HHHHHH
Q 018098 339 AVAKKK 344 (361)
Q Consensus 339 ~~~~~~ 344 (361)
..+..-
T Consensus 497 lh~lq~ 502 (966)
T KOG4626|consen 497 LHCLQI 502 (966)
T ss_pred HHHHHH
Confidence 554433
No 47
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.42 E-value=1.7e-13 Score=127.86 Aligned_cols=121 Identities=30% Similarity=0.422 Sum_probs=116.2
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.|..++..++.+++.+.|+.|+..|.+||+ ++|+.+..+.|+|.++++.++|..|+.++.+|
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~ka 64 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALKA 64 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHhh
Confidence 467788999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
|+++|...|+|+|+|.+++.++++.+|+.+|++...+.|+++.+.+.+.++...+.+++
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998887753
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=2.6e-12 Score=111.07 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=101.8
Q ss_pred HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH-HhcCC--hHHHHH
Q 018098 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LKGALL 285 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~~Al~ 285 (361)
...++.|..+|..+...|++++|+..|++|++ +.|.+..++.++|.++ ...|+ +++|+.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34578899999999999999999999999999 8899999999999985 67787 599999
Q ss_pred HHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098 286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 286 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (361)
.++++++++|+++.+++.+|.++..+|++++|+..++++++++|.+..-...+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999765444444
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=6.1e-12 Score=127.57 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=71.9
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+..+|..++..|++++|+..|++++. ++|....+|.++|.++..+|++++|+.+++++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIE------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456788889999999999999999999998 44444444555555555555555555555555
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (361)
++++|+++.+++.+|.++..+|++++|+.+|+++++++|++...+..++.+...+++
T Consensus 392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 555555555555555555555555555555555555555554444444444444333
No 50
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-12 Score=110.63 Aligned_cols=116 Identities=28% Similarity=0.380 Sum_probs=105.4
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+++.||.+|..++|+.|+.+|.+||. ++|+.+..|.|+|.||+++++|+.+..+|.+|
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 578899999999999999999999999998 88999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC---C--CCHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE---P--NDGGIKKELAVAKKK 344 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---P--~~~~~~~~l~~~~~~ 344 (361)
+.++|+.++++|-+|++.+....|++|+..+.+|..+. | .-.++.+.|..++..
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 99999999999999999999999999999999997663 2 234677777776543
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.34 E-value=3.2e-12 Score=90.94 Aligned_cols=66 Identities=36% Similarity=0.531 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP 329 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P 329 (361)
+..|.++|.+++.+++|++|+.+|+++|+++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5689999999999999999999999999999999999999999999999 79999999999999998
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.6e-11 Score=109.73 Aligned_cols=123 Identities=16% Similarity=0.248 Sum_probs=85.3
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
..+|--+|..+...++-..|++.|++|++ ++|.+-.+|+.+|++|.-++...-|+-++++|+
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHh------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 44455556666666666666666666666 666677777777777777777777777777777
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.+-|+++..|.-+|.+|..+++.++|+.+|++|+.+..-+..+...|+++.+++++.+++.
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 7777777777777777777777777777777777776666677777777777777665543
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.29 E-value=3.4e-11 Score=94.82 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=96.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+..++..|..+++.|+|++|+..|.+++...+ -++....+++.+|.++.+.+++++|+..+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP---------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45688899999999999999999999997211 112235688999999999999999999999999
Q ss_pred hcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098 292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 292 ~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (361)
..+|++ +.+++.+|.++..++++++|+..++++++..|++..+....
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 67 KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 999886 67899999999999999999999999999999987765543
No 54
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.29 E-value=3.7e-11 Score=98.58 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=93.0
Q ss_pred HHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhc
Q 018098 232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311 (361)
Q Consensus 232 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l 311 (361)
..+|+++++ ++|.. +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+
T Consensus 13 ~~~~~~al~------------------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLS------------------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML 71 (144)
T ss_pred HHHHHHHHH------------------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 457888888 66664 667999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 312 ~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
|++++|+..|+++++++|++..++..++.+...+++.+++...
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999988887776544
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=4.9e-12 Score=121.81 Aligned_cols=143 Identities=19% Similarity=0.175 Sum_probs=116.4
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhc-cc-----cccCCCCccch----------hHHHHHHHHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD-IC-----WEKEGIDEGKS----------SSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~-~~-----~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 274 (361)
..+.|...||.+.-+++++.||++|++|+.+-+ +. .-.+-...++. ...+|..-.+|+.+|.+|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 478899999999999999999999999998655 11 11111111111 234677778899999999
Q ss_pred HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+++++++.|.-++++|+.++|.|.......|..+.++|+.++|+..|++|+.++|.|+..+...+.+.-.+.++.++.+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888888888888887776554
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.5e-11 Score=111.54 Aligned_cols=122 Identities=21% Similarity=0.224 Sum_probs=115.5
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
..-.||.+.-+++-++|+.+|++||+ ++|....+|..+|.-|+++++-..|++.|.+|++++
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 34569999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
|.+.+|||.+|++|..++=..=|+-+|++|+++-|+|+.+|..|++|..++.+.+++.|-
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888776653
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.26 E-value=6.1e-11 Score=124.25 Aligned_cols=124 Identities=14% Similarity=0.055 Sum_probs=87.5
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+..+..+|..+.+.|++++|+..|+++++ ++|.+..++.++|.++..+|++++|+..+++|+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34556666666677777777777777766 666677777777777777777777777777777
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+++|+++.+++++|.++..+|++++|+..|+++++++|++..+....+.+..+....++..+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777666666655554444443
No 58
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=6.4e-11 Score=106.13 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=106.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.++.+.++|+.++..|+|..|+.+|..|++ .+|.+..+++.+|.+|+.+|+-..|+.+++++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 477899999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKKELAVAKKK 344 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~ 344 (361)
|++.|+...|...+|.+++.+|++++|.++|...++.+|++.. ++..++.+...
T Consensus 99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999997654 44444444433
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=4.1e-11 Score=115.52 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=119.8
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.-.+|+-+|.++.++++|+.|.-+|++|+. ++|.+..+...++..+.++|+.++|+..+++|
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 356789999999999999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
+.+||.++-..|.+|.++..+++|++|+..+++..++.|++..+...++++..+++...-+-+.+
T Consensus 550 ~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 550 IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998876665543
No 60
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=1.9e-11 Score=86.88 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=64.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~ 289 (361)
.|..+..+|..++..|+|++|+.+|+++++ ++|.+..+|+++|.||.++| ++.+|+.++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 478899999999999999999999999999 89999999999999999999 79999999999
Q ss_pred HhhcCC
Q 018098 290 AMRDGD 295 (361)
Q Consensus 290 al~~~p 295 (361)
+|+++|
T Consensus 64 al~l~P 69 (69)
T PF13414_consen 64 ALKLDP 69 (69)
T ss_dssp HHHHST
T ss_pred HHHcCc
Confidence 999998
No 61
>PRK15331 chaperone protein SicA; Provisional
Probab=99.23 E-value=9.2e-11 Score=95.85 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=103.7
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
..+.++..|..+|..|+|++|...|+-... +++.+...|..||.|+..+++|++|+..|..|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999998877 78888889999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (361)
..++++++...|+.|+||+.+|+.+.|..+|+.+++ .|.+..++..-......++.
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998 57766665544444444443
No 62
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.23 E-value=9.9e-12 Score=111.37 Aligned_cols=157 Identities=22% Similarity=0.258 Sum_probs=129.1
Q ss_pred CccccceEeccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHH
Q 018098 159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238 (361)
Q Consensus 159 ~~P~~~v~I~~~~~l~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~a 238 (361)
..|..+..|...+++....+.++. .+|. .....++.++.|...+..+..++..|.+++|++.|..|
T Consensus 75 s~~~~~~~~d~egviepd~d~pq~----MGds----------~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a 140 (377)
T KOG1308|consen 75 SSPESDLEIDGEGVIEPDTDAPQE----MGDS----------NAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA 140 (377)
T ss_pred CCCCcchhccCCCccccCCCcchh----hchh----------hhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence 445566677777777544443333 3443 23457788888999999999999999999999999999
Q ss_pred HhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHH
Q 018098 239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV 318 (361)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~ 318 (361)
+. ++|....+|.+++.++++++++..|+.+|..||.++|+..+-|-.++.+...+|+|++|.
T Consensus 141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 99 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 319 ESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 319 ~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
.+|..+++++- ++++-..+.++....+..
T Consensus 203 ~dl~~a~kld~-dE~~~a~lKeV~p~a~ki 231 (377)
T KOG1308|consen 203 HDLALACKLDY-DEANSATLKEVFPNAGKI 231 (377)
T ss_pred HHHHHHHhccc-cHHHHHHHHHhccchhhh
Confidence 99999999984 455555555554444433
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=9.4e-11 Score=117.27 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~ 332 (361)
++|.+..++..+|.++..+|++++|+..+++|++++|+++.+++.+|.++..+|++++|+..|+++++++|.+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 44444444444555544455555555555555555555555555555555555555555555555555555443
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=1.1e-10 Score=118.05 Aligned_cols=125 Identities=9% Similarity=0.050 Sum_probs=118.7
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.++.+..+|.+....|++++|+..+..++. +.|.+..++.+++.++.+++++++|+..++++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 578899999999999999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+..+|+++.+++.+|.++.++|++++|++.|++++..+|+++.++..++.+...+.+.+++..
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887766553
No 65
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=1.5e-10 Score=97.98 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=95.3
Q ss_pred HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~ 287 (361)
....+..+..+|..+...|+|++|+.+|++++++.+ ..+....++.++|.++.++|++++|+..+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---------------DPNDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------ccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445688899999999999999999999999998321 01123568999999999999999999999
Q ss_pred HHHhhcCCCchhhHhHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCC
Q 018098 288 EFAMRDGDDNVKALFRQGQAYMALND--------------VDAAVESFEKALKLEPND 331 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~a~a~~~l~~--------------~~~A~~~~~~al~l~P~~ 331 (361)
.+++.++|.+..++..+|.++..+|+ +++|++.+++++.++|++
T Consensus 96 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 96 HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999999999999888 688999999999999987
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=1.8e-10 Score=98.17 Aligned_cols=118 Identities=22% Similarity=0.137 Sum_probs=81.5
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
..+.+...+|..++..|++..|....++||+ .+|....+|.-||..|.++|+.+.|-+.|.+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 3677888899999999999999999999998 6777777777777777777777777777777
Q ss_pred HhhcCCCchh------------------------------------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 290 AMRDGDDNVK------------------------------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 290 al~~~p~~~k------------------------------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
|+.++|++.. .+-++|.|.+..|+++.|..+|+++++++|+++.
T Consensus 95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 7777776644 4455555555555555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 018098 334 IKKELAVAKKKI 345 (361)
Q Consensus 334 ~~~~l~~~~~~~ 345 (361)
....+...+-.-
T Consensus 175 ~~l~~a~~~~~~ 186 (250)
T COG3063 175 ALLELARLHYKA 186 (250)
T ss_pred HHHHHHHHHHhc
Confidence 555544444333
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3.3e-11 Score=114.55 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=107.7
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.++.+..+|..|+-.|+|++|+.+|+.||. .+|.+..+|+.||..+..-.+..+||..|++|
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 366777899999999999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----------DGGIKKELAVAKKKIHER 348 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~----------~~~~~~~l~~~~~~~~~~ 348 (361)
|.+.|..+.+.|++|.+++.+|.|++|+.+|-.||.+.+. +..+|..|..+...+.+.
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999875 134777777665554433
No 68
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.21 E-value=2e-10 Score=99.29 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~ 304 (361)
.++.++++..++++++ .+|.+..+|.++|.+|..+|++++|+..+++|++++|+++.+++.+
T Consensus 52 ~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5677888888888888 8899999999999999999999999999999999999999999999
Q ss_pred HHHH-HhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 305 GQAY-MALND--VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 305 a~a~-~~l~~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
|.++ ...|+ +++|.+.++++++++|++..++..++.+....++.+++...
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9985 67787 59999999999999999999999999999888888776543
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.4e-10 Score=108.17 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=103.5
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
..|+++.-.|..+|-.|++-.|.+.++++|. ++|....+|..||.+|+...+-++...++++
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~------------------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~ 385 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIK------------------LDPAFNSLYIKRAAAYADENQSEKMWKDFNK 385 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHh------------------cCcccchHHHHHHHHHhhhhccHHHHHHHHH
Confidence 3588899999999999999999999999999 7777777788888888888888888888888
Q ss_pred HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
|..+||.|+..||.||+.++-+++|++|+++|++++.|+|++.-.+..++-+..+..+..+.
T Consensus 386 A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 386 AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888877666666666555544443
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=1.9e-10 Score=115.15 Aligned_cols=131 Identities=11% Similarity=-0.056 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHHHHhhhccccc-----------cCCCCcc-----chhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098 225 KQDYKMALRKYRKALRYLDICWE-----------KEGIDEG-----KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~ 288 (361)
.+++++|+..+++|+++-+.... ......+ ....++|.+..+++++|.++..+|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45689999999999986432100 0111111 1135788888999999999999999999999999
Q ss_pred HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
++++++|.++.+++.++.+++.+|++++|+..++++++.+ |+++..+..++.+...+++.+++....
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999888888888888999999999999999885 788888999999988888777666543
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.19 E-value=1.2e-10 Score=86.28 Aligned_cols=99 Identities=40% Similarity=0.569 Sum_probs=90.4
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~ 293 (361)
.+..+|..++..|++++|+..++++++ ..|....++.++|.++...+++++|+..+++++.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467788999999999999999999998 44555578999999999999999999999999999
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
.|.+..+++.+|.++..+|++++|...+.++++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999998874
No 72
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.18 E-value=8.4e-11 Score=87.10 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH--HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHh
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~ 302 (361)
.|+|+.|+..|+++++ ..|. ....++++|.||+++|+|++|+..+++ +..+|.+....+
T Consensus 2 ~~~y~~Ai~~~~k~~~------------------~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE------------------LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHH------------------HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHH------------------HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 6899999999999998 5552 566788899999999999999999999 999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 018098 303 RQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 303 ~~a~a~~~l~~~~~A~~~~~~a 324 (361)
.+|.++..+|+|++|+..|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=6e-10 Score=97.45 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=69.6
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+..+|..++..|+|++|+..++++++ ..|....++..+|.++..+|++++|+..++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE------------------HDPDDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356677777788888888888888887776 33333444444455555555555555555555
Q ss_pred hhcCCCchh------------------------------------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098 291 MRDGDDNVK------------------------------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 291 l~~~p~~~k------------------------------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 334 (361)
++++|.+.. .++.+|.++..+|++++|...|+++++.+|++...
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 92 LTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred HhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 544444444 45555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 018098 335 KKELAVAKKKIHERRE 350 (361)
Q Consensus 335 ~~~l~~~~~~~~~~~~ 350 (361)
+..++.+....++.++
T Consensus 172 ~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 172 LLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHHHHHHHcCCHHH
Confidence 5555555555444433
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=5.7e-10 Score=97.58 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
.....+.++|.++..+|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++++.|.+...+..+..+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHH
Q 018098 342 KKKIHERREQE 352 (361)
Q Consensus 342 ~~~~~~~~~~~ 352 (361)
....++.+++.
T Consensus 213 ~~~~~~~~~a~ 223 (234)
T TIGR02521 213 ARALGDVAAAQ 223 (234)
T ss_pred HHHHhhHHHHH
Confidence 77766665544
No 75
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.16 E-value=3.7e-10 Score=118.48 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~ 304 (361)
.|++++|+..|+++++ ++|. ..++.++|.++.++|++++|+..+.+++.++|+++.++.++
T Consensus 589 ~Gr~~eAl~~~~~AL~------------------l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 589 PGQPELALNDLTRSLN------------------IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred CCCHHHHHHHHHHHHH------------------hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3677777777777776 6675 78899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 305 a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
|.++..+|++++|+..|+++++++|+++.++..++.+...+++.+++..
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999999888776654
No 76
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=1.8e-10 Score=80.87 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~ 332 (361)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999985
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=9.6e-10 Score=97.76 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=98.9
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+...|..++..|+|++|+..|++++...+ .++....+++++|.++..++++++|+..++++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP---------------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 467889999999999999999999999998221 12234468899999999999999999999999
Q ss_pred hhcCCCchh---hHhHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 291 MRDGDDNVK---ALFRQGQAYMAL--------NDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 291 l~~~p~~~k---a~~~~a~a~~~l--------~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
++..|+++. +++.+|.++..+ |++++|+..|+++++.+|++......+..
T Consensus 97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 999998877 799999999886 89999999999999999998766554433
No 78
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.12 E-value=3.1e-10 Score=103.74 Aligned_cols=126 Identities=24% Similarity=0.221 Sum_probs=103.8
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+...|..+.+.|++++|++.|++|++ .+|.+..+...++.++...|+++++...+...
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALE------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 456778899999999999999999999999 99999999999999999999999999999888
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
....|.++..+..+|.++..+|++++|+..|+++++.+|+|+.+...++.+....++.+++.+-
T Consensus 207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 207 LKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred HHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888999999999999999999999999999999999999999999999999988887776543
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.12 E-value=6e-10 Score=90.07 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (361)
.+|....+...+|.++...+++++|+..+++++.++|.++.+++++|.++..+|++++|+..|+++++++|.+...+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018098 339 AVAKKKIHERREQEK 353 (361)
Q Consensus 339 ~~~~~~~~~~~~~~k 353 (361)
+.+....++.+++.+
T Consensus 92 a~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 92 AECLLALGEPESALK 106 (135)
T ss_pred HHHHHHcCCHHHHHH
Confidence 999888877766543
No 80
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=8e-10 Score=93.13 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=90.2
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
..+..+...|..+...|+|++|+..|++++.+.. ..+....++.|+|.++..+|++++|+..|.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3688899999999999999999999999998321 1112456899999999999999999999999
Q ss_pred HhhcCCCchhhHhHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCC
Q 018098 290 AMRDGDDNVKALFRQGQAYM-------ALNDVD-------AAVESFEKALKLEPND 331 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a~~-------~l~~~~-------~A~~~~~~al~l~P~~ 331 (361)
++.++|.+..++..+|.++. .+|+++ +|+..|++++.++|.+
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999998 777876 5666666778888864
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=6.9e-10 Score=96.49 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=114.2
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+...|..++..|+|.+|+..+.++.+ +.|.+..+|+.+|.+|.++|++++|...|.+++
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 34455699999999999999999999999 889999999999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
++.|.++.+..++|..|.-.|+++.|...+..+...-+.+..+..+++.+.....+..++++
T Consensus 162 ~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 162 ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 99999999999999999999999999999999998888899999999999877776665543
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.1e-10 Score=105.70 Aligned_cols=122 Identities=22% Similarity=0.266 Sum_probs=106.9
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
.-.+.++|...|..+.|.+|+.+|++++..++...++ .+...+.+.|||.+|.++++|++||.+++++|
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-----------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-----------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-----------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567889999999999999999999999755433111 11466789999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
.+.|.++.++-..|.+|.-+|+++.|+..|.+++-+.|+|..+...|+.+-..
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888866544
No 83
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=1.6e-09 Score=100.21 Aligned_cols=117 Identities=12% Similarity=-0.027 Sum_probs=105.2
Q ss_pred hhHHHHHhcchhHHhh-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh--HHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL--KGALLDT 287 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~Al~~~ 287 (361)
...++..+|..+...+ ++++|+..+.+++. .+|.+..+|++++.++.++++. ++++..+
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~------------------~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAE------------------DNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHH------------------HCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 4567778888888887 68999999999998 8889999999999999999874 7889999
Q ss_pred HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
+++|+++|.|..||+.++.++..+|+|++|++++.++++++|.|..++..+..+...+
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999888876544
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=1.7e-09 Score=99.69 Aligned_cols=114 Identities=18% Similarity=0.088 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHH
Q 018098 226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (361)
Q Consensus 226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a 305 (361)
++.+.++..+.++|.-.+ ...+.....|+++|.+|..+|++++|+..++++++++|+++.+|+.+|
T Consensus 40 ~~~e~~i~~~~~~l~~~~--------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 105 (296)
T PRK11189 40 LQQEVILARLNQILASRD--------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG 105 (296)
T ss_pred hHHHHHHHHHHHHHcccc--------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466888999999886211 023355778999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 306 ~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
.++..+|++++|+..|+++++++|++..++..++.+....++.+++.+
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999998877766665543
No 85
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.08 E-value=1e-09 Score=111.80 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=83.3
Q ss_pred hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHH----HHHHHHHHhhc
Q 018098 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG----ALLDTEFAMRD 293 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----Al~~~~~al~~ 293 (361)
.|..+...|++++|+..|.++++ ..|....++.++|.++..+|++++ |+..|++++++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 35666777888888888888877 455566677777777777777764 67777777777
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+|+++.++..+|.++..+|++++|+..++++++++|+++.++..++.+....++..++.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777777777777777777777777777777776666655554443
No 86
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.07 E-value=1.2e-09 Score=111.40 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=108.9
Q ss_pred hHHHHHhcchhHHhhhHHH----HHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKM----ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~ 287 (361)
+..+..+|..++..|++++ |+..|+++++ ++|.+..++.++|.++.++|++++|+..+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ------------------FNSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5567788999999999996 8999999999 88888999999999999999999999999
Q ss_pred HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++++.++|+++.+++.+|.++..+|++++|+..|+++++.+|++......++.+....++.+++.
T Consensus 308 ~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 308 QQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999998776666666666555554443
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=7.4e-10 Score=99.41 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=104.0
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
+........+......++|.++++.+++.++--+ + ..+.....+..++.|+.+-+++.+||+.|.+
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep----------~----~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP----------E----ETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC----------c----ccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 3455555667777788899999999999987111 0 1122334556678999999999999999999
Q ss_pred HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
+|.++|+++.++..+|.+|+.-..|+.||.+|++|.+++|+|..++.-+..+++..++.
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988776654
No 88
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=9.3e-10 Score=97.47 Aligned_cols=92 Identities=22% Similarity=0.241 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
+-+-|.-.++-++|++|+..|++||+++|.|+-.|.+||.+|..+|.|+.|++++++|+.+||+...++..|+.++..+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 45566777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 018098 347 ERREQEKKQYRKM 359 (361)
Q Consensus 347 ~~~~~~k~~~~~~ 359 (361)
+.+++... |+|-
T Consensus 164 k~~~A~~a-ykKa 175 (304)
T KOG0553|consen 164 KYEEAIEA-YKKA 175 (304)
T ss_pred cHHHHHHH-HHhh
Confidence 88888777 6653
No 89
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.02 E-value=7.2e-09 Score=80.65 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=95.1
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~ 286 (361)
..++....+--.|..+...|+.+.|++.|.++|. +-|..+.+|+|+|+++.-.|+.++|+.+
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDD 99 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHH
Confidence 4455667777789999999999999999999999 7788899999999999999999999999
Q ss_pred HHHHhhcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 287 TEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 287 ~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
.++|+++.-.. ..++..+|..|..+|+.+.|..+|+.|.++-..
T Consensus 100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999987544 578999999999999999999999999998643
No 90
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.01 E-value=4.2e-09 Score=85.81 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
+......+.+|..+...|++++|...|+.++.+||.+...|+++|.++..+|+|++|+..|.+|+.++|+|+.....++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018098 341 AKKKIHERREQEKKQY 356 (361)
Q Consensus 341 ~~~~~~~~~~~~k~~~ 356 (361)
+...+++...+.+.+-
T Consensus 112 c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 112 CYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 9999988877766543
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4e-09 Score=96.85 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=119.4
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+++++..|..++-..+-+.|+.+|+++|++-+.. .........+.....+.+.|.-.++.|+|.+|-+.|..|
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh------~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH------QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhh------hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 47889999999999999999999999999944321 111122356667778899999999999999999999999
Q ss_pred hhcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 291 l~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
|.++|++ ++.|.++|.++..+|+.++|+.+++.|++|+|..-.++...++|+..+++++++-+..
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 7889999999999999999999999999999998888889999999988888765543
No 92
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2e-09 Score=99.77 Aligned_cols=128 Identities=23% Similarity=0.199 Sum_probs=116.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+.++.+.||+.|..|+|++|.+.|++||+ -+.....+++|+|..+.++|+.++|+..+-+.
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 366788999999999999999999999998 67778899999999999999999999999998
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
-.+--+++.+++.+|.+|..+.+..+|++.|.++..+-|+++.++..|+.+..+-.+..++-+-.|
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 888888999999999999999999999999999999999999999999999887766655544333
No 93
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.99 E-value=4.2e-09 Score=109.35 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=107.5
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+..+..+|..+...|++++|+..|+++++ .+|.+..++.+++.++...|++++|+..+++++
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55688899999999999999999999999 788888899999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
+.+|++.. ++.+|.++...|++++|+..|+++++++|+++.++..++.+....
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999 999999999999999999999999999999999988888776543
No 94
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.97 E-value=3.4e-09 Score=76.02 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=66.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
|..+|+..++|++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|++++++.|+++.+......+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 356789999999999999999999999999999999999999999999999999999999998877665543
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.97 E-value=9e-09 Score=92.60 Aligned_cols=111 Identities=12% Similarity=0.087 Sum_probs=94.6
Q ss_pred HHHHHhcchh-HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH---HHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098 213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT---KSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 213 ~~~~~~G~~~-~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~l~~~~~Al~~~~ 288 (361)
...+..+..+ ++.|+|++|+..|++.+. ..|. ...+++.+|.+|+.+|+|++|+..|.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~------------------~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK------------------KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665 567999999999999998 3333 35789999999999999999999999
Q ss_pred HHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 289 ~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
+++...|++ +.+++++|.++..+|++++|+..|+++++..|+...+......+
T Consensus 205 ~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 205 SVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 999888875 78999999999999999999999999999999988765555444
No 96
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=5e-09 Score=89.52 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=112.0
Q ss_pred HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~ 288 (361)
....+.+.+.|..++.+|+|++|...|++|+... .-+.-...|.|++.|.++.|+++.|..+++
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP----------------AYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----------------CCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 3357788999999999999999999999998722 233455679999999999999999999999
Q ss_pred HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++|+++|+++.+...++..++..|+|..|..++++...--+-..+.+.+..++..++++...+.
T Consensus 164 raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 164 RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999888888888888888888887765544
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=5.7e-09 Score=92.76 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=105.0
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHH---HHHHHHHHHHHHhc--------CCh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKL--------GDL 280 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l--------~~~ 280 (361)
...+..+|..+++.|+|++|+..|+++++ ..|.. ..+++.+|.++..+ +++
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 131 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIR------------------LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA 131 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCCchHHHHHHHHHHHHHhcccccCCHHHH
Confidence 35678899999999999999999999998 33322 23688999999876 889
Q ss_pred HHHHHHHHHHhhcCCCchhhH-----------------hHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 018098 281 KGALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAV 340 (361)
Q Consensus 281 ~~Al~~~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~~ 340 (361)
++|+..+++++..+|++..++ +.+|..|...|++++|+..|+++++..|++ ..++..++.
T Consensus 132 ~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 132 REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 999999999999999985442 467888999999999999999999998764 578899999
Q ss_pred HHHHHHHHHHHHH
Q 018098 341 AKKKIHERREQEK 353 (361)
Q Consensus 341 ~~~~~~~~~~~~k 353 (361)
+...+++..++..
T Consensus 212 ~~~~lg~~~~A~~ 224 (235)
T TIGR03302 212 AYLKLGLKDLAQD 224 (235)
T ss_pred HHHHcCCHHHHHH
Confidence 9999888877664
No 98
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.94 E-value=7.4e-09 Score=112.23 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=99.7
Q ss_pred HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p 295 (361)
...|..+++.|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+..|+++++++|
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQ------------------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4568888899999999999999998 7777778889999999999999999999999999999
Q ss_pred CchhhHhHHHH------------------------------------------HHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 296 DNVKALFRQGQ------------------------------------------AYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 296 ~~~ka~~~~a~------------------------------------------a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
.+..++..++. ++...|++++|++.|+++++++|+++.
T Consensus 417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~ 496 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW 496 (1157)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 88776654443 344678999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018098 334 IKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~k 353 (361)
++..++.+....++.+++..
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 88888888877776665543
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=1.2e-08 Score=95.74 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=116.2
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
....++-.+...+..|+++.|+..++..+. ..|.++..+.-++.++++.++..+|++.++++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~------------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA------------------AQPDNPYYLELAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 345667777778888888888888888776 77888889999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
+.++|...-..+++|++|...|++.+|+..+++.+.-+|+|+..|..|+++...+.+..++.......+
T Consensus 367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988777665554443
No 100
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.93 E-value=8.8e-09 Score=107.90 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=107.6
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+...|..++..|+|++|+..|+++++ .+|....++..+|.++...|++++|+..++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALA------------------IDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467788999999999999999999999998 56666778889999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~ 247 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAE 247 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999998888888887776665554443
No 101
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.93 E-value=9.1e-09 Score=107.81 Aligned_cols=128 Identities=21% Similarity=0.262 Sum_probs=105.8
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+..+|..+...|++++|+..|++++. ..|.+..++.+++.++.+.|+ .+|+..+++++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVK------------------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 45566777778888888888888888887 667777888899999999998 88999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
.+.|+++..+..+|.++..+|++++|+..|+++++++|.++.++..++.+....++.+++. +.+++|
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 897 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR-KELDKL 897 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999988887776655443 344444
No 102
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=3.5e-08 Score=91.43 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=103.6
Q ss_pred hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCchh
Q 018098 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al~~~p~~~k 299 (361)
.+...+++++|+..+.++|. ++|.+.++|..++.++..++ ++++++..+++++..+|++..
T Consensus 46 ~l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 46 VYASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence 35567899999999999999 99999999999999999998 689999999999999999999
Q ss_pred hHhHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098 300 ALFRQGQAYMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 300 a~~~~a~a~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+|+.++.++..+++. ++++.+++++++++|.|-.++...+-+...++..+++
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999874 7889999999999999999999999999888876653
No 103
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.92 E-value=1.7e-08 Score=96.41 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
+..+|..+++.|++++|+..|+++++ ..|....++..+|.++.+.|++++|+..+++++..+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALA------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44566666666677777777777666 444445566666666666666777776666666666
Q ss_pred CCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 295 DDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 295 p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
|.+ ..++..++.+|..+|++++|+..++++++++|+...+ ..++.+....++.+
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~ 299 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE 299 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence 655 3455566666666666666666666666666655433 44555444443333
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.92 E-value=1.4e-08 Score=96.96 Aligned_cols=140 Identities=17% Similarity=0.150 Sum_probs=89.6
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc----------ccCCCCccch------hHHHH-----HHHHHHHHHH
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW----------EKEGIDEGKS------SSLRK-----TKSQIFTNSS 271 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~----------~~~~~~~~~~------~~~~~-----~~~~~~~nla 271 (361)
..+..+|..+++.|+|++|+..|.++++..+... .......+.. ....+ .....+.++|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4567778888888888888888888876311100 0000000000 00111 1233566777
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHH
Q 018098 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 272 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~~~~~~ 350 (361)
.++.+.+++++|+..++++++.+|+...+++.+|.++...|++++|+..|+++++.+|.+ ..++..+..+....++.++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 777788888888888888888888888888888888888888888888888888877765 3455666666666555544
Q ss_pred HH
Q 018098 351 QE 352 (361)
Q Consensus 351 ~~ 352 (361)
+.
T Consensus 268 A~ 269 (389)
T PRK11788 268 GL 269 (389)
T ss_pred HH
Confidence 43
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=1.5e-08 Score=102.73 Aligned_cols=121 Identities=7% Similarity=-0.003 Sum_probs=106.2
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~ 286 (361)
..++.+.++...+..+.+.+++++|+..++++++ .+|.+..+++.+|.++.++|+|++|+..
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 3344578889999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 018098 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVAKKKI 345 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~ 345 (361)
|++++.-+|++++++..+|.++..+|+.++|...|++|+++... .+.....+.++....
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADL 236 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998743 344444555554433
No 106
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.91 E-value=2.4e-09 Score=75.00 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=59.0
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~ 296 (361)
.+|..+++.|+|++|+..|+++++ ..|.+..++..+|.|+..+|++++|+..++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 578899999999999999999999 77889999999999999999999999999999999998
Q ss_pred ch
Q 018098 297 NV 298 (361)
Q Consensus 297 ~~ 298 (361)
++
T Consensus 64 ~p 65 (65)
T PF13432_consen 64 NP 65 (65)
T ss_dssp -H
T ss_pred CC
Confidence 74
No 107
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.90 E-value=1.1e-08 Score=110.99 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=67.3
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~ 296 (361)
..|..++..|++++|+..|+++++ .+|.+..++..+|.+|.++|++++|+..++++++++|+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVR------------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 457778888888888888888887 55555566666666666666666666666666666655
Q ss_pred chhh--------------HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 297 NVKA--------------LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 297 ~~ka--------------~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
+... ...+|.++...|++++|+..|+++++++|++..++..++.+....++.+
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 4321 1123444444555555555555555555555444444444444444333
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.90 E-value=2.7e-08 Score=99.24 Aligned_cols=125 Identities=12% Similarity=0.105 Sum_probs=114.4
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+...||.+|..|++++|.+...++|+ .+|....+|..||.||..+|+.++|+...-.|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 477889999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
-.++|.+..-|.+++.....+|.+++|+-+|.+|++++|.+.........+..+..+..++-.
T Consensus 200 AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 200 AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence 999999999999999999999999999999999999999998888888888888777766543
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=4.2e-09 Score=74.41 Aligned_cols=67 Identities=31% Similarity=0.370 Sum_probs=62.4
Q ss_pred HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
++.|+|++|+..+++++..+|++..+++.+|.+|..+|++++|...+++++..+|+++.++..++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998888877754
No 110
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.88 E-value=2.1e-08 Score=82.92 Aligned_cols=105 Identities=26% Similarity=0.294 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCC
Q 018098 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDD 296 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~Al~~~~~al~~~p~ 296 (361)
-|+.|.+.|+.... .+|.+...++|-|.+++.+.+ +++|+.-+++||.++|+
T Consensus 6 ~FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~ 67 (186)
T PF06552_consen 6 FFEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN 67 (186)
T ss_dssp HHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc
Confidence 36778888888877 899999999999999888743 57799999999999999
Q ss_pred chhhHhHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 297 NVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 297 ~~ka~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
...|++.+|.+|..++. |++|..+|++|...+|+|..+++.|......=+-..
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~ 131 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHM 131 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHH
Confidence 99999999999988764 789999999999999999999999988865444333
No 111
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.8e-08 Score=89.90 Aligned_cols=120 Identities=19% Similarity=0.130 Sum_probs=105.1
Q ss_pred hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC---ChH
Q 018098 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLK 281 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~ 281 (361)
.......++.|.-+|.+++..+++..|...|.+|++ +.|.+..++..+|.+++... .-.
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCcccH
Confidence 334445688899999999999999999999999999 88899999999999888764 478
Q ss_pred HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
++...+.++|++||.++.+.+.+|..+++.|+|.+|+..++..+++.|.+..-...+....
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i 271 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI 271 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998765555444443
No 112
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.85 E-value=1.2e-07 Score=84.56 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=104.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..++..|..++..|+|++|++.|++.+..-+ ..+....+.+++|.+|.++++|++|+..+++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---------------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355688899999999999999999999998332 22345556799999999999999999999999
Q ss_pred hhcCCCc---hhhHhHHHHHHHhcC---------------C---HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHH
Q 018098 291 MRDGDDN---VKALFRQGQAYMALN---------------D---VDAAVESFEKALKLEPNDG---GIKKELAVAKKKIH 346 (361)
Q Consensus 291 l~~~p~~---~ka~~~~a~a~~~l~---------------~---~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~ 346 (361)
++++|++ ..++|.+|.++..++ + ..+|+..|++.++..|+.+ ++...+..++.++.
T Consensus 96 i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 96 IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 9999987 568999999875554 1 2578899999999999864 56666777777776
Q ss_pred HHHHHHHHHH
Q 018098 347 ERREQEKKQY 356 (361)
Q Consensus 347 ~~~~~~k~~~ 356 (361)
+.+-.--+.|
T Consensus 176 ~~e~~ia~~Y 185 (243)
T PRK10866 176 KYELSVAEYY 185 (243)
T ss_pred HHHHHHHHHH
Confidence 6655444433
No 113
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.82 E-value=8.4e-08 Score=70.61 Aligned_cols=88 Identities=31% Similarity=0.383 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
+++++|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..++..++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999998999999888888
Q ss_pred HHHHHHHH
Q 018098 346 HERREQEK 353 (361)
Q Consensus 346 ~~~~~~~k 353 (361)
++.+++.+
T Consensus 82 ~~~~~a~~ 89 (100)
T cd00189 82 GKYEEALE 89 (100)
T ss_pred HhHHHHHH
Confidence 77665543
No 114
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.80 E-value=6.2e-08 Score=77.64 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=95.1
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+..+...|...++.|+|.+|++.++....-.+ ..+....+.+.++-+|++.++|++|+..+++-|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 56788899999999999999999998765211 344566788999999999999999999999999
Q ss_pred hcCCCch---hhHhHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 018098 292 RDGDDNV---KALFRQGQAYMALND---------------VDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 292 ~~~p~~~---ka~~~~a~a~~~l~~---------------~~~A~~~~~~al~l~P~~~~~~~ 336 (361)
+++|.++ -|+|.+|.+++.+.. ..+|...|++.++.-|+++-+..
T Consensus 75 rLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 75 RLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999884 589999999999887 88999999999999999875543
No 115
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=3.5e-08 Score=83.54 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=105.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.|.-++++|+.+-..|-+..|.-.+.+++. +.|..+.+++-+|..+...|+|+.|.+.++..
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~ 125 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 125 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence 688899999999999999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG--GIKKELAVA 341 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~l~~~ 341 (361)
+++||.+--++.+||.+++--|+|.-|.+++.+-.+-||+|+ ..|..+.+.
T Consensus 126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987 445554444
No 116
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.80 E-value=4.7e-08 Score=101.61 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=101.6
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..+..+|..+...|++++|++.+++++. ..|.+..++.++|.++...|++++|+..+++++.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4556788899999999999999999998 7888889999999999999999999999999999
Q ss_pred cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
++|++..+++.+|.++..++++++|.+.++++++..|+++.+...-..
T Consensus 422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999976655443
No 117
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.79 E-value=1.2e-08 Score=96.06 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhh---HhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 257 ~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka---~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
...+|....+++|+|.+|.++|+|++|+..|++||+++|++..+ ||++|.+|..+|++++|+++|++|+++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34788999999999999999999999999999999999999865 999999999999999999999999998
No 118
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=2.8e-08 Score=97.65 Aligned_cols=105 Identities=24% Similarity=0.180 Sum_probs=93.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHH--HHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTE 288 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~--~~~ 288 (361)
.+..++..|..+..+|++.+|.+.|..|+. ++|..+.+...+|.|+++.|+..-|.. ...
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 466778888888999999999999999998 888899999999999999998777777 889
Q ss_pred HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
.|+++||.|.++||.+|.++..+|+.++|..+|..|++|++.+|.
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999999999988763
No 119
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.76 E-value=8.3e-08 Score=99.12 Aligned_cols=114 Identities=12% Similarity=0.016 Sum_probs=66.8
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+...+..+...++.|+|+.|+..|+++++ .+|........++.++..+|++++|+.+|++++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~------------------~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESK------------------AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 45678889999999999999999999998 444443222244555555555555555555555
Q ss_pred hcCCCchhhHhHH--HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQ--GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 292 ~~~p~~~ka~~~~--a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
+|.+...+-.+ |.++..+|++++|++.|+++++++|+++.++..+..+....
T Consensus 96 --~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 96 --SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred --cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 33332222222 44555555555555555555555555555554444443333
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.76 E-value=7.9e-08 Score=90.79 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
+...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.+++++++++|++..++..++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45668888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 018098 347 ERREQEKKQ 355 (361)
Q Consensus 347 ~~~~~~k~~ 355 (361)
++.++....
T Consensus 85 ~~~eA~~~~ 93 (356)
T PLN03088 85 EYQTAKAAL 93 (356)
T ss_pred CHHHHHHHH
Confidence 887666543
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.76 E-value=1.9e-07 Score=81.16 Aligned_cols=127 Identities=21% Similarity=0.222 Sum_probs=98.3
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..++..|..++..|+|.+|+..|++.+...+ ..+....+.+.+|.++.+.++|.+|+..+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467899999999999999999999999987332 23456678899999999999999999999999
Q ss_pred hhcCCCc---hhhHhHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDN---VKALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 291 l~~~p~~---~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~~~~ 352 (361)
++..|++ ..++|.+|.+++.+. ...+|+..|+..++.-|+++ .+...+..+...+.+.+-.-
T Consensus 69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 469999999977654 34589999999999999975 45566666666665554433
No 122
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.75 E-value=1.7e-07 Score=78.94 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=88.3
Q ss_pred chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc--
Q 018098 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-- 297 (361)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~-- 297 (361)
+.+|-.+.|..+...+.+.++.. -......+|+++|.++..++++++|+..+.+++.+.|+.
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTT----------------SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccccchhhhhHhccCC----------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence 34444555666666664443311 334567789999999999999999999999999987763
Q ss_pred -hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 298 -VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 298 -~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
+.+++++|.++..+|++++|+..|+++++++|.+...+..++.+...+
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999998888888887733
No 123
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=2.4e-08 Score=70.51 Aligned_cols=67 Identities=24% Similarity=0.192 Sum_probs=60.9
Q ss_pred hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhH
Q 018098 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~ 301 (361)
+++.|+|++|+..|++++. .+|.+..++..+|.||++.|++++|...+.+++..+|+++.++
T Consensus 1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 4678999999999999999 8899999999999999999999999999999999999998777
Q ss_pred hHHHH
Q 018098 302 FRQGQ 306 (361)
Q Consensus 302 ~~~a~ 306 (361)
.-++.
T Consensus 63 ~l~a~ 67 (68)
T PF14559_consen 63 QLLAQ 67 (68)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76664
No 124
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.74 E-value=2.6e-08 Score=72.46 Aligned_cols=67 Identities=30% Similarity=0.419 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GD---DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 261 ~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~----~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
|....++.++|.+|..+|+|++|+.++++++.+ .+ .-+.+++++|.++..+|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567789999999999999999999999999965 22 23789999999999999999999999999986
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=7.8e-08 Score=91.91 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=124.7
Q ss_pred hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc--------------------------c---------c--
Q 018098 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC--------------------------W---------E-- 247 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~--------------------------~---------~-- 247 (361)
..+.++.+++|.-+|.+....++=..||..+++|+++-+.. | .
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~ 391 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVS 391 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccc
Confidence 44455579999999999999999999999999998865411 0 0
Q ss_pred -cCCCCcc---------c----------hhHHHH--HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHH
Q 018098 248 -KEGIDEG---------K----------SSSLRK--TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (361)
Q Consensus 248 -~~~~~~~---------~----------~~~~~~--~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a 305 (361)
.++...+ . .....+ .++.++..||..|...++|++|+.+|+.||..+|++...|.|+|
T Consensus 392 a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 392 AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG 471 (579)
T ss_pred cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence 0011100 0 011233 45677888999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018098 306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 306 ~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
-++..-.+.++|+..|.+|++|-|+...++.+++...-.++.++++-+....
T Consensus 472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988876654
No 126
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=3e-08 Score=88.72 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=103.5
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccC---------CCCccch-------hHHHHHHHHHHHHHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---------GIDEGKS-------SSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~~~nla~~~~ 275 (361)
+.-+...+.++-..+++++|+++|+.+++.-+...+-- ...+|.. ..+--.+..+++|+|.|++
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 34445555556666677777777777666322110000 0111110 1144456788999999999
Q ss_pred hcCChHHHHHHHHHHhhcCC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 276 KLGDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 276 ~l~~~~~Al~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.-++++-++..+++|+.... .-+..||++|.+....|++..|.++|+-|+..||++.++..+|+.+..+..+..++.
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence 99999999999999997654 237899999999999999999999999999999999999999999988876665543
No 127
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=6.3e-08 Score=91.51 Aligned_cols=124 Identities=21% Similarity=0.169 Sum_probs=107.8
Q ss_pred hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc---CChH
Q 018098 205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---GDLK 281 (361)
Q Consensus 205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~ 281 (361)
.-++.+.++.++..||..+..+.+..|+..|.+++. ..|....+|.|+|.++++. ++--
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~~ 428 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDSY 428 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccHH
Confidence 456666789999999999999999999999999998 7778889999999999986 6788
Q ss_pred HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
.|+.+|..|++++|...||+|+++.++..++++.+|+.+...+....|.+.+.......+.+.+.
T Consensus 429 ~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~ 493 (758)
T KOG1310|consen 429 LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS 493 (758)
T ss_pred HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence 99999999999999999999999999999999999999998888888877665554444444443
No 128
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=1.8e-07 Score=79.12 Aligned_cols=89 Identities=22% Similarity=0.310 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~ 335 (361)
.++....+++++|.++...|++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..|+++++++|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 456777889999999999999999999999999887753 57999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q 018098 336 KELAVAKKKIHE 347 (361)
Q Consensus 336 ~~l~~~~~~~~~ 347 (361)
..++.+...+.+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 888888766544
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=6.1e-08 Score=94.82 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=110.6
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+.+....|+..+..++|.+|.++++.+++ ++|.....|+++|.|.+++++++.|..+|.++
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 455667788888889999999999999999 88999999999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+.++|++..+|.+++.+|..+++-.+|-..+++|++.+-++..+|.+...+...+...+.
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 999999999999999999999999999999999999998888888888877776665543
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=2.4e-07 Score=80.88 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=100.8
Q ss_pred HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p 295 (361)
....+.++..|+=+.+.....+++. ..+.+..++.-.+...+..|+|.+|+..+.++..++|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~------------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI------------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc------------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 4455555666666666666666544 4455555666688999999999999999999999999
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
+++++|.-+|.+|.++|++++|...|.+++++.|+++.+..+++-......+.+.+++-.
T Consensus 132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 132 TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877777776666544
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.67 E-value=1e-07 Score=69.23 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=62.3
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
..+..+..+|..++..|+|++|+.+|++++++.... ....+..+.++.|+|.|+..+|++++|++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367889999999999999999999999999963322 113556789999999999999999999999999
Q ss_pred HhhcC
Q 018098 290 AMRDG 294 (361)
Q Consensus 290 al~~~ 294 (361)
++++.
T Consensus 72 al~i~ 76 (78)
T PF13424_consen 72 ALDIF 76 (78)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 99763
No 132
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.67 E-value=1.3e-07 Score=86.52 Aligned_cols=125 Identities=21% Similarity=0.172 Sum_probs=97.5
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..+......+...++++++...++++.... -.+.+..+|..+|.++.+.|++++|+..+++||+
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELP----------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T-------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhcc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455567788899999999999976511 2246778899999999999999999999999999
Q ss_pred cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
++|++..+...++.++..+|+++++...++...+..|.|+.++..++.+...+++.+++..
T Consensus 175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 9999999999999999999999999999999999889999999999999999988776554
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.67 E-value=3.7e-07 Score=91.99 Aligned_cols=121 Identities=23% Similarity=0.272 Sum_probs=110.6
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+.-+++.+|-+|+|..+...+..|+... ...+..+..++.+|.+|..+|+|++|-.+|.++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNT---------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 46777888999999999999999999998732 145567778999999999999999999999999
Q ss_pred hhcCCCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 291 l~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
+..+|++ .-+++.+|+.|...|+++.|+.+|++.++..|++.+..+.|+.+.....
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 9999999 8999999999999999999999999999999999999999999988874
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=6.3e-08 Score=69.35 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=64.3
Q ss_pred cchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCch
Q 018098 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV 298 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ 298 (361)
...+++.++|++|++++++++. ++|.+..++..+|.|+.++|+|.+|+.+++++++.+|++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 4578899999999999999999 8999999999999999999999999999999999999998
Q ss_pred hhHhHHHH
Q 018098 299 KALFRQGQ 306 (361)
Q Consensus 299 ka~~~~a~ 306 (361)
.+..-++.
T Consensus 64 ~~~~~~a~ 71 (73)
T PF13371_consen 64 DARALRAM 71 (73)
T ss_pred HHHHHHHh
Confidence 87666553
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.66 E-value=3.3e-07 Score=71.82 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL 338 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l 338 (361)
..++++|..+.+.|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467899999999999999999999999999877 5799999999999999999999999999999985 5678888
Q ss_pred HHHHHHHHHHHHHH
Q 018098 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+...+++..++.
T Consensus 83 ~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 83 GMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHhCChHHHH
Confidence 88877776665544
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=2.6e-07 Score=75.80 Aligned_cols=97 Identities=23% Similarity=0.195 Sum_probs=54.9
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
......+|..++..|+|++|+..|++++...+ .......+..++|.+++.+|+|++|+..++. +
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---------------d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~ 111 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAP---------------DPELKPLARLRLARILLQQGQYDEALATLQQ-I 111 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-c
Confidence 34455566666666666666666666665110 1223344556666666666666666666644 2
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 324 (361)
.-.+..+.++..+|.++..+|++++|+..|++|
T Consensus 112 ~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 112 PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333334555566666666666666666666655
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=6.1e-07 Score=84.56 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=95.8
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
+-..|.++++.++.++|++.+++++. ++|....++.|+|.++++.|++.+|+...+..+.-+
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 34456778899999999999999999 888889999999999999999999999999999999
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
|+++..|..+|++|..+|+-.+|...+...+.+.-.-..+...+..++.+
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999998888888877777777776655555555555444
No 138
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=4.8e-07 Score=71.25 Aligned_cols=99 Identities=20% Similarity=0.110 Sum_probs=85.8
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..+++.|..+-..|+.++|+..|++++..-. ..+....++.++|.++..+|++++|+..+++++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---------------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL---------------SGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888899999999999999999998210 2345567899999999999999999999999999
Q ss_pred cCCC---chhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 293 DGDD---NVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 293 ~~p~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
-.|+ +.....-++.++..+|++++|+..+-.++-
T Consensus 67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888 778888899999999999999999987764
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.58 E-value=6.6e-07 Score=87.05 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=108.4
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.|..+.++|..|++.|+|.+|..++++|+++.... .....+.-...+.+++.++..++++++|+.+++++
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~----------~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL----------LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh----------hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 58889999999999999999999999999977641 11256677788999999999999999999999999
Q ss_pred hhcC-----C---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDG-----D---DNVKALFRQGQAYMALNDVDAAVESFEKALKLE--------PNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 291 l~~~-----p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--------P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
+++. + .-++.+-++|.+|+.+|+|++|...|++|+... +........++....+++.+.++.+
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 9653 2 337899999999999999999999999999875 2234456666666666666655443
No 140
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.9e-07 Score=94.02 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=94.5
Q ss_pred hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CC
Q 018098 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--GD 295 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~--~p 295 (361)
+|-++-..|+|.+|+..|.+..+ .-..+..+|.|+|.||+.+|+|..|++.|+.+++. ..
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrE------------------a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~ 713 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVRE------------------ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK 713 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHH------------------HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45556666666666666666655 33346688999999999999999999999999964 34
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
+++..+..+|.+++..|++.+|...+.+|+.+.|.|..+..+++.+..++...-
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999988877765543
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=4.4e-07 Score=85.73 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=61.7
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHH---HHHHHHHHHHhcCChHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ---IFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~Al~~ 286 (361)
..+..+.++|..+++.|+|++|+..|++||+ ++|.+.. +|+|+|.||.++|++++|+.+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~ 134 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAADC 134 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3578899999999999999999999999999 7777764 599999999999999999999
Q ss_pred HHHHhhcC
Q 018098 287 TEFAMRDG 294 (361)
Q Consensus 287 ~~~al~~~ 294 (361)
+.+||++.
T Consensus 135 LrrALels 142 (453)
T PLN03098 135 LRTALRDY 142 (453)
T ss_pred HHHHHHhc
Confidence 99999984
No 142
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.54 E-value=1.1e-06 Score=85.57 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=98.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+..+|..+..+|+|++|+..+++|++.+...+-. ..+....+..++|..|..+++|.+|+..|++||
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~----------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL----------KHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc----------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555669999999999999999999999964322110 245566667789999999999999999999999
Q ss_pred hc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHH---HHHHHHHHHH
Q 018098 292 RD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELAV---AKKKIHERRE 350 (361)
Q Consensus 292 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~~~~~~~~l~~---~~~~~~~~~~ 350 (361)
.+ +|.-+-++.++|.+|...|++++|..++++|+++- ...+.+...+.+ +...+.+.++
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence 43 56668899999999999999999999999999874 234444444444 4444444433
No 143
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.54 E-value=5.1e-06 Score=63.67 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=83.5
Q ss_pred HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh----
Q 018098 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---- 291 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al---- 291 (361)
...|...+..|-|.+|...|.+|++...+..+++. =+.+..+.-|+..|+.++..+|+|++++...+++|
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa------FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA------FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh------cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 34456667889999999999999997766544332 23678889999999999999999999999999999
Q ss_pred ---hcCCC----chhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 292 ---RDGDD----NVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 292 ---~~~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
+++.+ ++.+.+++|.++..+|+.++|+..|+++-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45554 3678899999999999999999999998664
No 144
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=1.2e-06 Score=77.33 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=99.2
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+...++.+..+++.|+|..|...|..-+.--+ -.+....+++-||.+++.+|+|+.|...|..++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---------------~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYP---------------NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CCcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 34488999999999999999999999987221 233456789999999999999999999999999
Q ss_pred hcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 292 ~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
+-.|++ +.+++.+|.+...+|+-++|...|+++++--|+...+......+
T Consensus 206 k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 206 KDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 998887 46799999999999999999999999999999988776655544
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=3.3e-06 Score=73.39 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=86.5
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc-----------ccCC---CCccch--hHHHHHHHHHHHHHHHHHHhc
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEG---IDEGKS--SSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~---~~~~~~--~~~~~~~~~~~~nla~~~~~l 277 (361)
..+-.|..+-..|.|++|+++|+..+.--+... .... ...+.+ .+.-+.+..+|.-+|..|+.+
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 344567777789999999999998887111000 0000 000001 122334556777777777777
Q ss_pred CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 278 ~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 350 (361)
++|++|.=++++.+-+.|.++-.+-|+|..++-+| +++-|..+|.++++++|.+...+..+-.+-..+.+.-+
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk 243 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISK 243 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhH
Confidence 77777777777777777777777777777776665 45667777777777777666666666666555554433
No 146
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=90.62 Aligned_cols=118 Identities=10% Similarity=0.061 Sum_probs=98.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+...|..+...|+|++|++.|+++++ .+|.+..++..++..+..++++++|+..+++++
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 34555667788889999999999999999 888888889999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
..+|.+... ..++.++..++++.+|+..|+++++++|++..+...+..+...+.-.
T Consensus 164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 999985444 44455565677887799999999999999999888887776665433
No 147
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.46 E-value=3.9e-06 Score=81.02 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=104.7
Q ss_pred HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~ 287 (361)
+.+.+......|...+..|+|+.|.+...++.+ ..|.....+.-.|.++..+|+++.|..++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l 141 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD------------------HAAEPVLNLIKAAEAAQQRGDEARANQHL 141 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344677778889999999999999999999887 44444556677788888899999999999
Q ss_pred HHHhhcCCCch-hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 288 EFAMRDGDDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 288 ~~al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.++.+..|++. .+....+.++...|++++|++.+++.++..|+++.+...+..+....++.++..
T Consensus 142 ~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 142 EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 99998888775 354556888999999999999999999999999999999999888888876544
No 148
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=5e-06 Score=74.67 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=96.2
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
+..+-++|-..++|++||+.-++.+.+-. ....-..+..|+.+|..++...+.+.|+....+|+..+
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~-------------q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGG-------------QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD 210 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCC-------------ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence 33444455555555555554444433111 11344566778899999988999999999999999999
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q 018098 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~~~~~~~~k 353 (361)
|+++.|-.-+|.+....|+|+.|++.++++++-||.. +++...|..+...+.+..+-..
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999999999999999974 6788888888888877665443
No 149
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.44 E-value=6.1e-06 Score=79.35 Aligned_cols=126 Identities=13% Similarity=0.028 Sum_probs=99.3
Q ss_pred HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHH-HHHHHhcCChHHHHHH
Q 018098 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS-SACKLKLGDLKGALLD 286 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a~~~~~l~~~~~Al~~ 286 (361)
+.+.+......|...+-.|+|+.|.+...++-+ ..+ ...+++.+ +....+.|+++.|..+
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~------------------~~~-~p~l~~llaA~aA~~~g~~~~A~~~ 140 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNAD------------------HAE-QPVVNYLLAAEAAQQRGDEARANQH 140 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------ccc-chHHHHHHHHHHHHHCCCHHHHHHH
Confidence 444677788899999999999999977776554 111 12333444 5555889999999999
Q ss_pred HHHHhhcCCCchh-hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 287 TEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 287 ~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+.++.+.+|++.- .....+..+...|++++|++.+++..+.+|+++.+...+..+..+.++.++..
T Consensus 141 l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 141 LERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999998753 44455889999999999999999999999999999999999988888776654
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=5.2e-06 Score=68.03 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=100.7
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
..+...+......+..+++..+...+++.+.--+ -.+....+.+.+|.++...|++++|+..++.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3466666677777788899988888888776111 1234467788899999999999999999999
Q ss_pred HhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 290 AMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 290 al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
++...|+. ..+.+++|.++...|++++|+..++. ..-.+-.+.+...++.+....++..++...
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99987665 56899999999999999999999966 333445677888888888888777665543
No 151
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-06 Score=83.39 Aligned_cols=128 Identities=23% Similarity=0.131 Sum_probs=119.1
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
+.+..|+..|-.++..+++.+|.++|.||.. +++....+|...|..+.-.++.++|+..|..
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATT------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhh------------------cCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 3577899999999999999999999999998 9999999999999999999999999999999
Q ss_pred HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
|-++-|......+.+|.-|..++.++.|..+|..|+.+.|+|+-+...++.+.-..+.+.++.+-+
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888777777665543
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.40 E-value=4.9e-07 Score=66.75 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=68.8
Q ss_pred cCChHHHHHHHHHHhhcCCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 277 LGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 277 l~~~~~Al~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
.++|+.|+..+++++..+|. +...++.+|.+++.+|+|++|+..+++ ++.+|.+......++.+...+++++++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58999999999999999995 577888899999999999999999999 889998889999999999999998887654
Q ss_pred H
Q 018098 355 Q 355 (361)
Q Consensus 355 ~ 355 (361)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 153
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=2.8e-06 Score=87.41 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=100.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
..++..+...+...+++++|+...+.+++ ..|....+|+.+|..+.+.+++.+|... .++
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--NLI 90 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence 55677788888899999999999999998 7888888899999988888887776655 565
Q ss_pred hcCCCch-------------------hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNV-------------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 292 ~~~p~~~-------------------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.+-+.+. .|++.+|.||..+|++++|.+.|+++++++|+|..+...++-..... +.+++.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 5555554 89999999999999999999999999999999999999999887777 444433
No 154
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.39 E-value=3.2e-06 Score=82.05 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=104.4
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~ 293 (361)
.++......|..++|.+.+..-+..|. -.|.....+.-.|.....+|+-++|...+..+++.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~------------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK------------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH------------------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 455666677888899888888888777 45555666777888888999999999999999999
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|+.+.-+|.-+|..+..-.+|++|+.+|..|+.++|+|..++.-++.++.++++.+--.
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999998876533
No 155
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.39 E-value=4.2e-06 Score=83.94 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=96.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
...+++.+|.++-.+|+..+|+.....|.- ++|.+...|..++....++|.+.+|+-+|.+|
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 467889999999999999999999988877 77888899999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 329 (361)
|..+|.+.+.+++++..|..+|++..|...|.+++.++|
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=98.37 E-value=3.6e-06 Score=79.76 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHH---hhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHhhcC
Q 018098 227 DYKMALRKYRKAL---RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---------GDLKGALLDTEFAMRDG 294 (361)
Q Consensus 227 ~y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~~Al~~~~~al~~~ 294 (361)
.-+.|+..+.+|+ . ++|....+|.-+|.|++.. ..-.+|+....+|++++
T Consensus 273 ~~~~Al~lf~ra~~~~~------------------ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSD------------------IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHHHHHHhhccc------------------CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 5678889999999 5 8888999999999999875 23467888999999999
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
|.++.|++.+|.++...++++.|+..|++|+.++|+...++...+-+...-++.+++.
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999888888665555554443
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.7e-05 Score=69.08 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=74.7
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDT 287 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Al~~~ 287 (361)
..++|.+++..|+..|+|++|.-||++.+- ..|.+..++..+|.++.-+| ++.-|.++|
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll------------------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLL------------------IQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 588999999999999999999999999997 78889999999999988875 578899999
Q ss_pred HHHhhcCCCchhhHhHHHHHHHhcC
Q 018098 288 EFAMRDGDDNVKALFRQGQAYMALN 312 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~a~a~~~l~ 312 (361)
.++++++|.+..++|-+-.+...+-
T Consensus 215 ~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHhChHhHHHHHHHHHHHHHHH
Confidence 9999999999999998876655443
No 158
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.35 E-value=2.2e-06 Score=80.87 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=88.5
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+...|..+...|++++|+..++++++ +.|.+..++..+|.++...|++++|+..+++++
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 44556778899999999999999999999 777778899999999999999999999999999
Q ss_pred hcCCCch----hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098 292 RDGDDNV----KALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 292 ~~~p~~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 329 (361)
...|..+ ..+..+|.++..+|++++|+..|++++...|
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9987542 3566899999999999999999999987776
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.32 E-value=7e-06 Score=81.05 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=87.4
Q ss_pred hHHHHHhcchhHHh---hhHHHHHHHHHHHHhhhcccc--------------ccCCCCccch----h------H--HHHH
Q 018098 212 VDSIKVFGNEHYKK---QDYKMALRKYRKALRYLDICW--------------EKEGIDEGKS----S------S--LRKT 262 (361)
Q Consensus 212 a~~~~~~G~~~~~~---g~y~~A~~~y~~al~~~~~~~--------------~~~~~~~~~~----~------~--~~~~ 262 (361)
|-.++-.|..++.. +++..|+.+|++|+++-+... .......... . . .++.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 44556667666544 458899999999998654210 0001101100 0 0 1333
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
...+|.-+|..+...|++++|...+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 446677788888888999999999999999998 5789999999999999999999999999999998875
No 160
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.31 E-value=4.1e-06 Score=80.84 Aligned_cols=127 Identities=16% Similarity=0.022 Sum_probs=100.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHH--HHHHHHHHHhcCChHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI--FTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~Al~~~~ 288 (361)
....+...|..+...|++++|+...+++++ ..|.+... ..-+....+..++...++..++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------------------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK------------------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh------------------hCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 567778888999999999999999999998 33333321 1223333345688899999999
Q ss_pred HHhhcCCCch--hhHhHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018098 289 FAMRDGDDNV--KALFRQGQAYMALNDVDAAVESFE--KALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 289 ~al~~~p~~~--ka~~~~a~a~~~l~~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
++++.+|+++ ..+..+|.+++.+|+|++|.++|+ .+++.+|++.. ...++.+...+++.+++ ++.|+
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A-~~~~~ 394 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA-AAMRQ 394 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHH
Confidence 9999999999 888899999999999999999999 68888887766 44889998888776555 34444
No 161
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.30 E-value=1.7e-06 Score=78.14 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
+-..|.-|+++|.|++||.+|.+++.++|.|+-.+.+||.+|+.+.+|..|..+|+.|+.|+-....++...+.++..++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35578899999999999999999999999999999999999999999999999999999999777677777777777766
Q ss_pred HHHHHHH
Q 018098 347 ERREQEK 353 (361)
Q Consensus 347 ~~~~~~k 353 (361)
..+++.+
T Consensus 180 ~~~EAKk 186 (536)
T KOG4648|consen 180 NNMEAKK 186 (536)
T ss_pred hHHHHHH
Confidence 6655443
No 162
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=1.3e-05 Score=72.11 Aligned_cols=129 Identities=13% Similarity=0.070 Sum_probs=108.2
Q ss_pred HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~ 288 (361)
.+.|.-+.+++..+....+.+.|.....+|+. .+|..+.+-.-+|.+++..|+|+.|++.++
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQ------------------ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------------------hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 34577778888888899999999999999999 889999999999999999999999999999
Q ss_pred HHhhcCCCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 289 FAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 289 ~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
.+++-||.. +.+.-.+..||..+|+.++.+..+.++.+..++. ++...+.++....+-...++...+
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHH
Confidence 999999988 6788889999999999999999999999998754 444555555555554444444433
No 163
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.29 E-value=1e-05 Score=79.98 Aligned_cols=123 Identities=14% Similarity=0.072 Sum_probs=110.3
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
-..|...+..+.+.+.-++|..+..+|-. +.+..+..|+.+|.++...|++.+|.+.|..|+
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 44555666666777788888889999887 889999999999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVE--SFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.+||+.+....-+|.++...|+..-|.. .+..+++++|.|.++|..++.+.....+.+++.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 9999999999999999999998888877 999999999999999999999999988876543
No 164
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.29 E-value=6.6e-06 Score=77.58 Aligned_cols=142 Identities=10% Similarity=-0.081 Sum_probs=107.0
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-------------cCCCCccc------hhHHHHHHHHHHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------------KEGIDEGK------SSSLRKTKSQIFTNSSA 272 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~nla~ 272 (361)
.+.....|..++..|++++|+..++++++..+.... ........ .....|....++..+|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 344566788899999999999999999875432110 00000000 01234455567778999
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHH
Q 018098 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG----IKKELAVAKKKIHER 348 (361)
Q Consensus 273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~----~~~~l~~~~~~~~~~ 348 (361)
++..+|++++|+..++++++++|+++.++..+|.+++.+|++++|+..+++++.+.|.++. .+..++.+....++.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999999886443 234577777777666
Q ss_pred HHHHH
Q 018098 349 REQEK 353 (361)
Q Consensus 349 ~~~~k 353 (361)
+++.+
T Consensus 203 ~~A~~ 207 (355)
T cd05804 203 EAALA 207 (355)
T ss_pred HHHHH
Confidence 65543
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=98.29 E-value=1e-05 Score=66.48 Aligned_cols=96 Identities=10% Similarity=-0.063 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (361)
+.+......+..|--+...|++++|...|.-...++|.+++.++.+|.++..+++|++|+..|..|..++++|+......
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 55566677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018098 339 AVAKKKIHERREQEKK 354 (361)
Q Consensus 339 ~~~~~~~~~~~~~~k~ 354 (361)
+.|...+++...+.+-
T Consensus 112 gqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 112 GQCQLLMRKAAKARQC 127 (165)
T ss_pred HHHHHHhCCHHHHHHH
Confidence 9999888887776653
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=1.3e-05 Score=63.08 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKEL 338 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~---~~~~~~~l 338 (361)
.+++++|.++-.+|+.++|+..|.+++...... ..++..+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 367899999999999999999999999976544 679999999999999999999999999999898 77777777
Q ss_pred HHHHHHHHHHHHHH
Q 018098 339 AVAKKKIHERREQE 352 (361)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (361)
+.+...+.+.+++-
T Consensus 82 Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 82 ALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHCCCHHHHH
Confidence 77766666555543
No 167
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.24 E-value=1.6e-06 Score=52.06 Aligned_cols=32 Identities=38% Similarity=0.797 Sum_probs=19.9
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
++|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 168
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.6e-06 Score=77.93 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=87.5
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
.+.+.-+...|.+-.+...|+..|.+.++ .-|.+++.+...|.++..++++++|++.|..++
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld------------------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLD------------------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhh------------------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 44444455555555556666666666655 567788888888999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
+++|.|+++.--.|..|+.-++.|-|+.+|.+.+++--.+++...+++.|--
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 9999888888888888888888888888888888888778887777776643
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=5.3e-06 Score=78.62 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=42.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
+|.+++..++..+|++...++|...|.++..+.-.|..+...++++.|+...+++.++.|++...|..|+++.-.+++.+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 44455455555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred HH
Q 018098 350 EQ 351 (361)
Q Consensus 350 ~~ 351 (361)
.+
T Consensus 286 ~A 287 (395)
T PF09295_consen 286 NA 287 (395)
T ss_pred HH
Confidence 43
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.3e-06 Score=77.43 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=87.9
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+.+++..+.+.++|..|+.+-+++|. ++|.++.+++.+|.+++.+++|+.|+.++++|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34567788899999999999999999999 999999999999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHH-HHHHHHHHHhCC
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAA-VESFEKALKLEP 329 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~P 329 (361)
+++|.|-.+...+..+.....++.+. .+.|.+.+..-+
T Consensus 319 k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 319 KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999988888888887777766655 677888776654
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.21 E-value=9.3e-06 Score=80.15 Aligned_cols=54 Identities=15% Similarity=-0.049 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh
Q 018098 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k 299 (361)
++++|...|++|++ ++| +..+|..+|.++...|++++|+..+.+|++++|..+.
T Consensus 435 ~~~~A~~~l~rAl~------------------L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAID------------------LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHH------------------cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 46666666666665 667 4678999999999999999999999999999999875
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.6e-05 Score=71.22 Aligned_cols=93 Identities=22% Similarity=0.158 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~ 335 (361)
.+|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-.|.+++... .-.+|...|++++++||.|..++
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 789999999999999999999999999999999999999999999999877654 45689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018098 336 KELAVAKKKIHERREQ 351 (361)
Q Consensus 336 ~~l~~~~~~~~~~~~~ 351 (361)
..|+...-.-++++++
T Consensus 231 ~lLA~~afe~g~~~~A 246 (287)
T COG4235 231 SLLAFAAFEQGDYAEA 246 (287)
T ss_pred HHHHHHHHHcccHHHH
Confidence 9999887777776654
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.20 E-value=3.6e-05 Score=64.10 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=95.3
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
......+|+.+...|++.+|..+|++++.= +-..+..++..+|.+.+.++++..|....++..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-----------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG-----------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-----------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 456778899999999999999999999971 334566788999999999999999999999999
Q ss_pred hcCCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 292 RDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 292 ~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
+.+|. .+....-.|.++..+|++++|...|+.++..-|+ +.......+..
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~L 203 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEML 203 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 99986 4788888999999999999999999999999986 33444444433
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.19 E-value=1.7e-05 Score=71.44 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 018098 264 SQIFTNSSACK-LKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKK 336 (361)
Q Consensus 264 ~~~~~nla~~~-~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~ 336 (361)
...+++.|..+ ++.++|++|+..|+..+...|++ +.++|++|.+|+..|++++|+..|+++++..|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45667788876 66799999999999999999998 5799999999999999999999999999999985 56666
Q ss_pred HHHHHHHHHHHHHHH
Q 018098 337 ELAVAKKKIHERREQ 351 (361)
Q Consensus 337 ~l~~~~~~~~~~~~~ 351 (361)
.++.+...+++..++
T Consensus 222 klg~~~~~~g~~~~A 236 (263)
T PRK10803 222 KVGVIMQDKGDTAKA 236 (263)
T ss_pred HHHHHHHHcCCHHHH
Confidence 667776665544443
No 175
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.19 E-value=3.5e-05 Score=63.05 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=86.1
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-c-C--CCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-K-E--GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
+...|......++...++..+.+++.+..--.- . . .+.......+......++..++..+...|++++|+..|+++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 334455666778899999999999987653211 1 1 22223345677788888999999999999999999999999
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
+.++|.+..+|..+-.+|..+|+..+|+..|+++.+.
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987543
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=4.6e-06 Score=53.35 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=29.3
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
.+++.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456667777777777777777777777777777777666654
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.16 E-value=1.7e-06 Score=52.00 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=31.3
Q ss_pred HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHH
Q 018098 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~ 319 (361)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.15 E-value=4.5e-05 Score=69.78 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=85.6
Q ss_pred hhHHHHHhcchhHHh-hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
.|..+..+|..+... +++++|+++|++|+++...- ........++.++|.++.++++|++|+..|++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 578888999999998 99999999999999965421 12334567889999999999999999999999
Q ss_pred HhhcCCC------chh-hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098 290 AMRDGDD------NVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 290 al~~~p~------~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~ 331 (361)
+....-+ +++ .+++.+.+++.+|++..|...+++....+|.-
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9875422 233 45677889999999999999999999999963
No 179
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=1.5e-05 Score=78.44 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
+..+...+|.-....++|+++..+++..++++|-....||++|.+..++++++.|..+|.++..++|++.+.|.++..++
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 33444444555556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 018098 343 KKIHERREQEKKQ 355 (361)
Q Consensus 343 ~~~~~~~~~~k~~ 355 (361)
-++++.+++.+..
T Consensus 564 i~~~~k~ra~~~l 576 (777)
T KOG1128|consen 564 IRLKKKKRAFRKL 576 (777)
T ss_pred HHHhhhHHHHHHH
Confidence 9988887765543
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=2.9e-05 Score=73.63 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 336 (361)
.|.+..++..-|..+++.++++.|+..+++|..+.|++.+.|+.+|.+|..+|++++|+..++.+--+.+.++...+
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~ 306 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLK 306 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhh
Confidence 44567778888999999999999999999999999999999999999999999999999888765544444444433
No 181
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.12 E-value=4.6e-06 Score=50.00 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
.+|+++|.+|..++++++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 579999999999999999999999999999974
No 182
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.10 E-value=6.3e-06 Score=49.27 Aligned_cols=34 Identities=47% Similarity=0.793 Sum_probs=24.2
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~ 331 (361)
+++++.+|.++..+|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=1.9e-05 Score=66.40 Aligned_cols=81 Identities=21% Similarity=0.198 Sum_probs=70.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCc-----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
-|.-+++-|+|.+|...|+.||.+.|.. +-.|.++|.|+..++.++.|+.++.+|++|+|.+..++...+.++..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3556688999999999999999999976 45888999999999999999999999999999988888887888777
Q ss_pred HHHHHH
Q 018098 345 IHERRE 350 (361)
Q Consensus 345 ~~~~~~ 350 (361)
+...+.
T Consensus 181 ~ek~ee 186 (271)
T KOG4234|consen 181 MEKYEE 186 (271)
T ss_pred hhhHHH
Confidence 755544
No 184
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.09 E-value=2e-05 Score=76.69 Aligned_cols=121 Identities=17% Similarity=0.094 Sum_probs=97.9
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
.+.+--.|-.+...|+-++|..+-..+++ .++....||.-+|.++..-++|++||.+|..||
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555678888888888888888888888 677777888888888888888888888888888
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+++|+|...|.-++....++++|+.....-.+.+++.|...+.|..++..+-.+.++..
T Consensus 103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887777777776666655544
No 185
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.08 E-value=2.9e-05 Score=74.66 Aligned_cols=120 Identities=18% Similarity=0.115 Sum_probs=95.8
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
+.+..+...+..+...|+.++|....+++++ ..+ +..+..-.+. +..+++++++..+++
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------------------~~~-~~~l~~l~~~--l~~~~~~~al~~~e~ 319 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK------------------RQY-DERLVLLIPR--LKTNNPEQLEKVLRQ 319 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCC-CHHHHHHHhh--ccCCChHHHHHHHHH
Confidence 3566677788999999999999999999987 211 1122222222 244899999999999
Q ss_pred HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
.++.+|+++..++.+|.++...++|++|...|++++++.|++.. ...++.+..+..+.+++
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999998765 44788888877776555
No 186
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.06 E-value=0.00017 Score=63.35 Aligned_cols=132 Identities=15% Similarity=0.136 Sum_probs=105.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+++.|...++.|+|++|+.+|+....-- + ..|....+...++.++.+.++|++|+...++-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~------p---------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH------P---------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C---------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 36779999999999999999999999987611 1 34455678899999999999999999999999
Q ss_pred hhcCCCc---hhhHhHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDN---VKALFRQGQAYMALN--------DVDAAVESFEKALKLEPND---GGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 291 l~~~p~~---~ka~~~~a~a~~~l~--------~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
+++.|.+ .-++|-+|.++...= --.+|+..|+..+.--|+. +++...+..+..++...+-.--+.|
T Consensus 98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 457888898876532 2357888999999999986 4677777777777777666555554
Q ss_pred h
Q 018098 357 R 357 (361)
Q Consensus 357 ~ 357 (361)
.
T Consensus 178 ~ 178 (254)
T COG4105 178 L 178 (254)
T ss_pred H
Confidence 3
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=3.6e-05 Score=70.44 Aligned_cols=132 Identities=19% Similarity=0.165 Sum_probs=92.0
Q ss_pred HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~ 287 (361)
..+.+..+...|+.+-..++|++|.++|.+|.+..... ........+|.+.+.||.+. ++++|+..+
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~------------~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~ 97 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL------------GDKFEAAKAYEEAANCYKKG-DPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 33467788888888888999999999999998744321 12334556778888887666 999999999
Q ss_pred HHHhhcCCC------chhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHHHHHHHH
Q 018098 288 EFAMRDGDD------NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPN--D----GGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 288 ~~al~~~p~------~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~--~----~~~~~~l~~~~~~~~~~~~~~ 352 (361)
++|+.+.-. -++++.++|.+|... +++++|+..|++|+++-.. . ......++.+..+++++.++-
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 999976321 267888899999998 9999999999999887432 1 234455566666666665543
No 188
>PRK11906 transcriptional regulator; Provisional
Probab=98.05 E-value=2.3e-05 Score=74.43 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~ 304 (361)
..+-.+|.+.-.+|++ +++.++.++..+|.+....++++.|+..+++|+.++|+.+.+||..
T Consensus 317 ~~~~~~a~~~A~rAve------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~ 378 (458)
T PRK11906 317 ELAAQKALELLDYVSD------------------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR 378 (458)
T ss_pred hHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence 4455667777777777 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098 305 GQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 305 a~a~~~l~~~~~A~~~~~~al~l~P~~ 331 (361)
|.+....|+.++|++.+++|++++|.-
T Consensus 379 ~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 379 ALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 999999999999999999999999964
No 189
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2e-05 Score=73.06 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=73.6
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+..|...|-.+|..++|..|+.+-+|+|+ .++....++.-.|.....+++.++|+-.|..|+
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 44556666666777777777777777776 566666666666666666666666666666666
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (361)
.+.|.....|-.+--+|...|++.+|...-..+++.-|++......++
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 666666666666666666666666666666666666666666665554
No 190
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.05 E-value=2e-05 Score=72.23 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHH--hcC--ChHHHHHHHHHHhhcCC
Q 018098 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL--KLG--DLKGALLDTEFAMRDGD 295 (361)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~l~--~~~~Al~~~~~al~~~p 295 (361)
..+.+.++++.|.+.++..-+. ++.. ...+++.++. ..| .+++|...|++.....+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~------------------~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~ 198 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQI------------------DEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG 198 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCC------------------SCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred HHHHHcCCHHHHHHHHHHHHhc------------------CCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence 4667888999999888876551 1111 2233333322 233 58888888888877777
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
.++..+..+|.+++.+|+|++|...++++++.+|+++++..++..+...+++.
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 88888888888888889999998888888888888888888887776666554
No 191
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.02 E-value=0.00012 Score=57.38 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-H---HHHHHHHHHH
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-G---GIKKELAVAK 342 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~---~~~~~l~~~~ 342 (361)
+-.-|.+..+-|+.+.|++.|.++|.+.|.++.+|.++|+++.-.|+.++|+.++++|+++...- . ......+.+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44456777889999999999999999999999999999999999999999999999999997542 2 2233444444
Q ss_pred HHHHHHHHHH
Q 018098 343 KKIHERREQE 352 (361)
Q Consensus 343 ~~~~~~~~~~ 352 (361)
+.+.+.+.+.
T Consensus 126 Rl~g~dd~AR 135 (175)
T KOG4555|consen 126 RLLGNDDAAR 135 (175)
T ss_pred HHhCchHHHH
Confidence 4444444433
No 192
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=4e-05 Score=79.17 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=97.3
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
-.+++.+|..|-+.|++++|...|+++|+ ++|.++.+++|+|-.|... +.++|+.++.+|+
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVK------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 35788999999999999999999999999 8899999999999999999 9999999999998
Q ss_pred --------------------hcCCCchhh--------HhHHH------------HHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098 292 --------------------RDGDDNVKA--------LFRQG------------QAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 292 --------------------~~~p~~~ka--------~~~~a------------~a~~~l~~~~~A~~~~~~al~l~P~~ 331 (361)
..+|++... .-.++ ..|...++|++++..|+.+++++|.|
T Consensus 177 ~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 177 YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc
Confidence 335554332 22234 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 018098 332 GGIKKELAVAKKK 344 (361)
Q Consensus 332 ~~~~~~l~~~~~~ 344 (361)
.-++..+..+.+.
T Consensus 257 ~~a~~~l~~~y~~ 269 (906)
T PRK14720 257 NKAREELIRFYKE 269 (906)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999988774
No 193
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.01 E-value=4.3e-05 Score=75.19 Aligned_cols=92 Identities=20% Similarity=0.119 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
...+++.+|+.|..+|++++|+.+.++||...|+.+..|+.+|.++...|++++|...++.|-.+|+.|.-+....+.-.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999987777777776
Q ss_pred HHHHHHHHHHHH
Q 018098 343 KKIHERREQEKK 354 (361)
Q Consensus 343 ~~~~~~~~~~k~ 354 (361)
.+..+.+++++.
T Consensus 273 LRa~~~e~A~~~ 284 (517)
T PF12569_consen 273 LRAGRIEEAEKT 284 (517)
T ss_pred HHCCCHHHHHHH
Confidence 666666555543
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.98 E-value=1.7e-05 Score=73.47 Aligned_cols=110 Identities=17% Similarity=0.282 Sum_probs=88.0
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~ 286 (361)
++...-.++-++||.+|-.|+|+.||..-+.-|++.+..- .....-.++.|+|.||.-+|+++.|+++
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 3344456677889999999999999999998888665320 1223446899999999999999999999
Q ss_pred HHHHhhc----CCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 287 TEFAMRD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 287 ~~~al~~----~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
|.+++.+ ... .+...|.+|.+|.-+.+++.||.++.+-+.+.
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988744 322 36778999999999999999999999877764
No 195
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.98 E-value=4.5e-05 Score=50.52 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=41.3
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (361)
..+|.+|.+++.+|+|++|..+++.+++++|+|..+......++.++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999888888777654
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.98 E-value=0.00021 Score=62.11 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=91.8
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-----------C
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------D 279 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~ 279 (361)
...+...+|..+++.|+|..|+..|++.++.-+ -.+....+++.+|.+++++. .
T Consensus 41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~ 105 (203)
T PF13525_consen 41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTS 105 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CCcchhhHHHHHHHHHHHhCccchhcccChHH
Confidence 356778899999999999999999999998332 23445568888888877653 2
Q ss_pred hHHHHHHHHHHhhcCCCchh-----------------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHH
Q 018098 280 LKGALLDTEFAMRDGDDNVK-----------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI---KKELA 339 (361)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~k-----------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~---~~~l~ 339 (361)
..+|+..++..++..|++.. --+..|.-|...|.|..|+.-++.+++.-|+.+.. +..+.
T Consensus 106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLA 185 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 45899999999999998832 23446888999999999999999999999997654 45555
Q ss_pred HHHHHHHHHH
Q 018098 340 VAKKKIHERR 349 (361)
Q Consensus 340 ~~~~~~~~~~ 349 (361)
++..+++...
T Consensus 186 ~~y~~l~~~~ 195 (203)
T PF13525_consen 186 EAYYKLGLKQ 195 (203)
T ss_dssp HHHHHTT-HH
T ss_pred HHHHHhCChH
Confidence 5555555544
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.98 E-value=1.2e-05 Score=51.37 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~ 306 (361)
.++..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468899999999999999999999999999999999999886
No 198
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.97 E-value=3.1e-05 Score=78.66 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=94.0
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...|..+|-.+.+.+++..|+..++.|++ .+|.+..+|..+|.+|...|+|..|++.+++|.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 34555688888888888889988988888 888888889999999988899999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
.++|.+.-+.|..|.....+|+|.+|+..+...+..-......+..++++.-+.
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999988888888888888889999988888888776655555555555554443
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.97 E-value=3.6e-05 Score=78.18 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=112.4
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc----------cccCCCCccch--------hHHHHHHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC----------WEKEGIDEGKS--------SSLRKTKSQIFTNSS 271 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~nla 271 (361)
..|-.+-.+|..|..--+...|..+|.+|.++-..- +.+.+.+++.. ..........|..+|
T Consensus 490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 357888899999988888899999999998743311 11111111111 111223334566799
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 272 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
..|++.+++..|+..++.||+.+|.+..+|..+|.+|...|+|.-|++.|.+|..++|.+.-.+...+.++..+.+++++
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888887764
No 200
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=5.7e-05 Score=70.78 Aligned_cols=78 Identities=13% Similarity=-0.017 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
--||..|+...-+++||.++++|--+.|+.+|...-.|.|+...|+|..|...|+...+..|.|.+.++.|.++...+
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 345556666666777888888888888888887777788888888888888888888888888887777777775554
No 201
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.94 E-value=0.00012 Score=71.64 Aligned_cols=126 Identities=10% Similarity=-0.013 Sum_probs=88.5
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..+...++.....+..++|+...+++|+ .-|....+|.-+|+++..+++.+.|...|...++
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALK------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHH------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 3344445555556666777777777776 5566667777777777777777777777777777
Q ss_pred cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
..|.++..|..++..-...|+.-.|...++++.-.+|.|...+....++..+....+.++....
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777666666665555554443
No 202
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00028 Score=65.65 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=73.1
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHH-----
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL----- 285 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~----- 285 (361)
....+.-.|+.+...++.++|+-.|+.|.. +.|....+|..|-.||+..+++.+|..
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQM------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHh------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 456778899999999999999999999999 677777778777777777777655444
Q ss_pred -------------------------------HHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 286 -------------------------------DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 286 -------------------------------~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
.++++|++.|.+.+|...+|..+..-|.+++++..+++++...|+
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 444445666666666666666666656665555555555555543
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.00014 Score=64.41 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAV 340 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~~ 340 (361)
.++.|.-+++.|+|..|...|..-+...|++ +.|+|++|.+++.+|+|++|...|..+.+-.|.+ ++....++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888899999999999999999999999987 6899999999999999999999999999999875 467777788
Q ss_pred HHHHHHHHHHHHH
Q 018098 341 AKKKIHERREQEK 353 (361)
Q Consensus 341 ~~~~~~~~~~~~k 353 (361)
+..++++.+++.+
T Consensus 224 ~~~~l~~~d~A~a 236 (262)
T COG1729 224 SLGRLGNTDEACA 236 (262)
T ss_pred HHHHhcCHHHHHH
Confidence 8777777666543
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.84 E-value=3.3e-05 Score=46.04 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
.+|..+|.++.++|+|++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999975
No 205
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.81 E-value=0.00022 Score=66.34 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=91.2
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~ 293 (361)
.....|-..|++++|..|...|..||+++..-.-...+-......+......+-..+..||+++++.+.|+....+.|.+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 33456677888999999999999999888754443333333333455566667789999999999999999999999999
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
+|.+..-+.+.|.++..+.+|.+|...+--|.-
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987766544
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.79 E-value=0.00012 Score=67.16 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~ 306 (361)
.+++|.-.|++... ..+..+.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.++..
T Consensus 182 ~~~~A~y~f~El~~------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 182 KYQDAFYIFEELSD------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp CCCHHHHHHHHHHC------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 68899999998654 223456778899999999999999999999999999999999999999
Q ss_pred HHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHH
Q 018098 307 AYMALNDV-DAAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 307 a~~~l~~~-~~A~~~~~~al~l~P~~~~~~~~ 337 (361)
+...+|+. +.+.+++.+....+|+++-+...
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 99999988 66777888888899988755443
No 207
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.75 E-value=0.00016 Score=70.75 Aligned_cols=85 Identities=21% Similarity=0.161 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
..+|+..+.....+++.++|+..|+++|+.-|+..|.|..+|+++..+++.+.|...|...++..|+....|..|+.+.+
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 35677777777889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 018098 344 KIHER 348 (361)
Q Consensus 344 ~~~~~ 348 (361)
.....
T Consensus 731 k~~~~ 735 (913)
T KOG0495|consen 731 KDGQL 735 (913)
T ss_pred Hhcch
Confidence 76543
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.00019 Score=64.15 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh---hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI---KK 336 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k---a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~---~~ 336 (361)
....++..|.-++..|+|++|+..+++++...|.... +.+.+|.+|+.+++|++|+..+++.++++|+++.+ ..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4455778899999999999999999999999998854 55999999999999999999999999999987543 44
Q ss_pred HHHHH
Q 018098 337 ELAVA 341 (361)
Q Consensus 337 ~l~~~ 341 (361)
.++.+
T Consensus 111 ~~g~~ 115 (243)
T PRK10866 111 MRGLT 115 (243)
T ss_pred HHHHh
Confidence 44433
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.74 E-value=0.0002 Score=57.61 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
...+++.|...++.|+|.+|++.++.+....|.. ..+.+.++.+|+..++|++|++.+++.++|+|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3467888999999999999999999999988765 689999999999999999999999999999999764
No 210
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=6.5e-05 Score=64.89 Aligned_cols=82 Identities=13% Similarity=-0.014 Sum_probs=72.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
-+.+|+.-++|..|+..|.+||.++|..+..|-++|.+|+.+.+++.+..++.+|++++|+.......++......+.+.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35667778899999999999999999999999999999999999999999999999999998888888888877766554
Q ss_pred HH
Q 018098 350 EQ 351 (361)
Q Consensus 350 ~~ 351 (361)
++
T Consensus 96 ea 97 (284)
T KOG4642|consen 96 EA 97 (284)
T ss_pred HH
Confidence 43
No 211
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.73 E-value=0.00013 Score=72.83 Aligned_cols=129 Identities=23% Similarity=0.406 Sum_probs=110.8
Q ss_pred CchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc--CCh
Q 018098 203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL 280 (361)
Q Consensus 203 ~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~ 280 (361)
.+....+..+...+..||.+|.+++|..|-..|..++.+++. -+.....+..|.+.||+.+ ++|
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~ 109 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY 109 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence 456677778899999999999999999999999999986542 4556778889999998876 789
Q ss_pred HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
..++..|.-|+...|.-.+++.+++.+|..+++++-|++++.-....+|.+.....-+.+++..+
T Consensus 110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 110 PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999989999999966665555555444
No 212
>PRK10941 hypothetical protein; Provisional
Probab=97.72 E-value=0.00036 Score=62.90 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
.....+.|+=.+|++.++++.|+..++..+.++|+++.-+--+|.+|.++|++..|+.+++..++..|+++.+......+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 44567889999999999999999999999999999999888899999999999999999999999999998776655554
Q ss_pred H
Q 018098 342 K 342 (361)
Q Consensus 342 ~ 342 (361)
.
T Consensus 259 ~ 259 (269)
T PRK10941 259 H 259 (269)
T ss_pred H
Confidence 3
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.68 E-value=0.00012 Score=67.92 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=94.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.-.++.++||.+.-.|+|+.|+++|++++.++..+- -....+...+.||..|.-+.++++||.|.++-
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999998664331 12234556788999999999999999999998
Q ss_pred hhcCCC------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHH
Q 018098 291 MRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PN-DGGIKKELAVAKKKI 345 (361)
Q Consensus 291 l~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~-~~~~~~~l~~~~~~~ 345 (361)
|.+... ...+++.+|.++..+|..++|+.+.++.+++. |. ...++.++..+...+
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l 368 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL 368 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence 866432 37899999999999999999999988887763 21 223455555544433
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.66 E-value=7.4e-05 Score=44.56 Aligned_cols=32 Identities=44% Similarity=0.760 Sum_probs=22.7
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46677777777777777777777777777764
No 215
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0003 Score=64.24 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 271 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
|.++...-.|++||+.|.++|.-+|+.......+|.+|+.+.-|+-+.+.+.-.++-.|+..-+....+-
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3333344445566666666666666555555566666666666666666666666666655544444433
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.0013 Score=57.96 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=88.7
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR--KTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
-...+|...++.|+-+.|..++++.-+.... ++ .....+..|.+.+|...++|.+|...+++++
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k--------------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQK--------------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhh--------------hhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 3455677777777777777777755432111 22 2344567888999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVA 341 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~~~ 341 (361)
+.||.++.+..++|.+++.+|+..+|++.++.+++..|.- ..+..+|..+
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999973 3344444443
No 217
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.53 E-value=0.0004 Score=63.58 Aligned_cols=125 Identities=22% Similarity=0.189 Sum_probs=93.4
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~ 293 (361)
.+..+|+.+...+.|+++++.|++|++++.... ..-....++..++..+..++++++|+-+..+|+++
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~------------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNND------------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC------------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 455589999999999999999999999764320 01123457889999999999999999999999976
Q ss_pred CCC------c----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHHHHHHH
Q 018098 294 GDD------N----VKALFRQGQAYMALNDVDAAVESFEKALKLE--PNDGGIK----KELAVAKKKIHERRE 350 (361)
Q Consensus 294 ~p~------~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~~~~~~----~~l~~~~~~~~~~~~ 350 (361)
-.. + .-++|+++.++..+|+.-+|.++++++.++. ..|..++ ..++.+.+...+.++
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 422 2 4578899999999999999999999998874 3454433 334445554444444
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.51 E-value=4.7e-05 Score=45.61 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=31.3
Q ss_pred HHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018098 234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL 285 (361)
Q Consensus 234 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~ 285 (361)
+|++||+ ++|.+..+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889998 999999999999999999999999863
No 219
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00073 Score=61.78 Aligned_cols=86 Identities=22% Similarity=0.216 Sum_probs=67.5
Q ss_pred hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhH
Q 018098 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~ 301 (361)
+...++|..|+...+-.+. ..+|++ .. .-.-+|.|++++|+|++|+..|+-+...+.-+.+.+
T Consensus 32 fls~rDytGAislLefk~~----------~~~EEE-----~~--~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~ 94 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN----------LDREEE-----DS--LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG 94 (557)
T ss_pred HHhcccchhHHHHHHHhhc----------cchhhh-----HH--HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc
Confidence 4567888989888776664 111111 22 234468999999999999999999999888889999
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHH
Q 018098 302 FRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 302 ~~~a~a~~~l~~~~~A~~~~~~a 324 (361)
.++|.+++-+|.|.+|...-.+|
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999998766554
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.43 E-value=0.0041 Score=57.77 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=107.3
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~ 286 (361)
.+...+......|..-+-.|+|.+|.....++-+ ..+.-..+|.--|.+.-++|+++.|=.+
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae------------------~~e~p~l~~l~aA~AA~qrgd~~~an~y 140 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE------------------HGEQPVLAYLLAAEAAQQRGDEDRANRY 140 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh------------------cCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 3445677788888888999999999999998776 4445556677778888899999999999
Q ss_pred HHHHhhcCC-CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098 287 TEFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 287 ~~~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
..++-+..+ ++..+...++..+...|+++.|.....++++..|.++.+.....++.-+++++.+.
T Consensus 141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence 999999943 45678888999999999999999999999999999999999999998888877653
No 221
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.0031 Score=53.16 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=83.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+.....++..++..+++++|+...+.++.... .......+-.++|.+.+.++.+++|+...+..
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTK---------------DENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccch---------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 345667788899999999999999999996321 34456667789999999999999998877665
Q ss_pred hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~ 331 (361)
-.-+ ..+..--.+|.++..+|+-++|+..|+++++.+++.
T Consensus 153 ~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 153 KEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 4332 123345678999999999999999999999998544
No 222
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.42 E-value=0.0027 Score=64.37 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=97.7
Q ss_pred hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhh
Q 018098 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka 300 (361)
.....++|.+|+....+.++ -.|+..-+..--|....++|++++|....+..-...+++...
T Consensus 18 d~ld~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t 79 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT 79 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH
Confidence 34567899999999999998 778888888888999999999999995555555667778888
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
+--+-.+|..++++++|...|++++..+|+ .+....+=.+..+.+.+++.++..
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999 777777777777777777666554
No 223
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.41 E-value=0.00022 Score=42.47 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
.+|..+|.+|.++|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999954
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0039 Score=55.95 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=101.3
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF---- 289 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~---- 289 (361)
.-...+..+...+++.+|...+..++. ..+.+..+...++.||+..|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~------------------~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQ------------------AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHH------------------hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 345567788899999999999999998 6677778888999999999998665443332
Q ss_pred ------------------------------HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q 018098 290 ------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGIKKE 337 (361)
Q Consensus 290 ------------------------------al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P--~~~~~~~~ 337 (361)
.+..+|++..+-+.+|..+...|++++|++.+-..++.+- +|..+++.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 2266899999999999999999999999999988888765 36788888
Q ss_pred HHHHHHHHHH----HHHHHHHHHhhhc
Q 018098 338 LAVAKKKIHE----RREQEKKQYRKMF 360 (361)
Q Consensus 338 l~~~~~~~~~----~~~~~k~~~~~~f 360 (361)
+-++-..+.. ..+-+++.|+.+|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL~slLy 304 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKLYSLLY 304 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhhC
Confidence 8888877762 2334555555544
No 225
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.37 E-value=0.0049 Score=48.76 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhh-cCCCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098 262 TKSQIFTNSSACKLKLG---DLKGALLDTEFAMR-DGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~---~~~~Al~~~~~al~-~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 336 (361)
......+|+|.+..+-. +.++.+..++..++ -+|.. -...|.+|..++.+++|+.|+.++...++.+|+|..+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34456788888888765 46778899999996 55543 578899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 018098 337 ELAVAKKKIHE 347 (361)
Q Consensus 337 ~l~~~~~~~~~ 347 (361)
....++.++..
T Consensus 110 Lk~~ied~itk 120 (149)
T KOG3364|consen 110 LKETIEDKITK 120 (149)
T ss_pred HHHHHHHHHhh
Confidence 88777776653
No 226
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0016 Score=63.14 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=74.6
Q ss_pred HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Q 018098 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG- 294 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~- 294 (361)
++.+..+|+.+..++|+..++- +++....+..-+|+++.++++|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~---------------------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG---------------------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc---------------------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 5788889999999999999982 333445577888999999999999999999986222
Q ss_pred -----------------------------CC-chhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 295 -----------------------------DD-NVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 295 -----------------------------p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
|+ ....+|+.|.++...|+|.+|++.+++|+++
T Consensus 142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11 3568899999999999999999999999443
No 227
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0019 Score=63.18 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=89.0
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..+++.+..+|+.++|..|++.|...++++.+ +..+........+++.||+++.+.+.|++++++|=+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~------------D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS------------DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc------------hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999996642 124555688899999999999999999999999999
Q ss_pred cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
.+|.++-.-+..-.+...-+.-++|+....+....
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999988888888888889999999888776544
No 228
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00044 Score=64.69 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=109.6
Q ss_pred eeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCC--ccCCC---CC
Q 018098 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGE--SIYGL---KF 91 (361)
Q Consensus 17 ~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~--~~~~~---~~ 91 (361)
.-.|.|+++.+-.|.-++-|...|.-. |+++..|.||+..+++|.||..-....+|. -|.++ +|
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 349999999999999999999999876 999999999999999999985433332222 11122 24
Q ss_pred CCC--ccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecc
Q 018098 92 EDE--NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169 (361)
Q Consensus 92 ~~e--~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~ 169 (361)
+.. ++.++|.. -+....+.-..-.+-+|+++....+.+.....|+|.+..+.++++.|....++....|..++.|..
T Consensus 180 Pr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 180 PRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred ccccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 443 34566643 333333332233456888888888888899999999999999999999999999888888888877
Q ss_pred ccccC
Q 018098 170 CGEIP 174 (361)
Q Consensus 170 ~~~l~ 174 (361)
....+
T Consensus 259 VelgR 263 (558)
T KOG0882|consen 259 VELGR 263 (558)
T ss_pred eehhh
Confidence 76543
No 229
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.32 E-value=0.00067 Score=58.04 Aligned_cols=81 Identities=20% Similarity=0.154 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (361)
+...+.+++.+|..|-.+|-+.-|..+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999766555544
Q ss_pred H
Q 018098 340 V 340 (361)
Q Consensus 340 ~ 340 (361)
.
T Consensus 141 i 141 (297)
T COG4785 141 I 141 (297)
T ss_pred e
Confidence 3
No 230
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.32 E-value=0.0043 Score=61.29 Aligned_cols=126 Identities=15% Similarity=0.047 Sum_probs=100.9
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+.-++..+-..|+|++|+++.++||. ..|..+.+|...|.++-+.|++.+|....+.|-
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIE------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567778888899999999999999999 788889999999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC-----HHHHH--HHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE--PND-----GGIKK--ELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~~-----~~~~~--~l~~~~~~~~~~~~~~k~~ 355 (361)
.+|+.+--.....+..+++.|+.++|...+...-+-+ |.. +.+|. ..+++..+.+++..+-+..
T Consensus 256 ~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 256 ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999887777777888999999999999988776554 211 22343 3444555555555555443
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.0063 Score=51.51 Aligned_cols=116 Identities=27% Similarity=0.237 Sum_probs=64.1
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHH-HHHhcCChHHHHHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA-CKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~~l~~~~~Al~~~~~a 290 (361)
...+...|......+++..|+..+.+++... +........... ++...++++.|+..+.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALD------------------PDPDLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------------------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555666666666666666665511 111111222222 666666677777777666
Q ss_pred hhcCC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 018098 291 MRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVAKKKI 345 (361)
Q Consensus 291 l~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~ 345 (361)
+..+| .....++.++..+...++++.|+..+.++++..|. .......+.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 157 LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 66555 34555555555566666666666666666666666 344455554444433
No 232
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.27 E-value=0.00091 Score=44.31 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ 306 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~ 306 (361)
.+++.+|..+.++|+|.+|+.+++.+|+++|+|..|..-+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 367889999999999999999999999999999877655443
No 233
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0099 Score=51.56 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=88.5
Q ss_pred hHHHHHhcchhHHh-hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 212 VDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
|.-+.++|..+-.. .++++||.+|++|-++... + ......-.|+...|..-..+++|.+|+..|+++
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---E---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---h---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556665554 7899999999999885431 0 123334457777788888899999999999999
Q ss_pred hhcCCCc------hhhHh-HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHH
Q 018098 291 MRDGDDN------VKALF-RQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAVAKKKIHERR 349 (361)
Q Consensus 291 l~~~p~~------~ka~~-~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~~~~~ 349 (361)
.+..-+| +|-|+ ..|.+++...+.-.|...+++..+++|.-.. =-+.+..+...+++..
T Consensus 181 a~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d 248 (288)
T KOG1586|consen 181 ARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD 248 (288)
T ss_pred HHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence 8765544 45554 4577888889999999999999999997433 3345555555555443
No 234
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.26 E-value=0.00048 Score=65.37 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=67.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 269 nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|.....+...+.+...+.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44556678899999999999999999999999999999999999999999999999999998655444444444444444
Q ss_pred HH
Q 018098 349 RE 350 (361)
Q Consensus 349 ~~ 350 (361)
++
T Consensus 89 ~~ 90 (476)
T KOG0376|consen 89 KK 90 (476)
T ss_pred HH
Confidence 33
No 235
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0072 Score=53.42 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=64.2
Q ss_pred HHHHHHHHhc----CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 268 TNSSACKLKL----GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 268 ~nla~~~~~l----~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
.-||..+.++ +++.+|.-.|++.-..-|..+..+..+|.+++.+++|++|...++.++.-++++++...++..+..
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL 252 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3355555543 458888888888888777788888889999999999999999999999999999988888877766
Q ss_pred HHHHH
Q 018098 344 KIHER 348 (361)
Q Consensus 344 ~~~~~ 348 (361)
.++.-
T Consensus 253 ~~Gkd 257 (299)
T KOG3081|consen 253 HLGKD 257 (299)
T ss_pred HhCCC
Confidence 65543
No 236
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.18 E-value=0.0026 Score=53.05 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV----------DAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 347 (361)
|+.|.+.++.....+|.++.++++.|.++..+.++ ++|+.-|+.|+.++|+...+.-.++.+...+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999887544 678999999999999999999999998777654
No 237
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.15 E-value=0.0012 Score=63.88 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=91.9
Q ss_pred cchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
|...--.|+-..|+.+...|+. +.|. ......|||.+.++-+-...|-....++|.+.-..
T Consensus 614 glywr~~gn~~~a~~cl~~a~~------------------~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se 675 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALN------------------LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE 675 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhc------------------cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC
Confidence 3334457788889999999987 3332 22347899999999999999999999999999777
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
+-.+|.+|.++..+.+.+.|++.|+.|++++|+++.+...|..+..
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8889999999999999999999999999999999999988888776
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.13 E-value=0.0039 Score=61.22 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=83.9
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+--+...|..+..+|+.++|++.|++++... .........++..++.|++-+.+|++|..++.+.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQ--------------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 45667788899999999999999999998611 1245566788999999999999999999999999
Q ss_pred hhcCCCchhhHh--HHHHHHHhcCCH-------HHHHHHHHHHHHhCC
Q 018098 291 MRDGDDNVKALF--RQGQAYMALNDV-------DAAVESFEKALKLEP 329 (361)
Q Consensus 291 l~~~p~~~ka~~--~~a~a~~~l~~~-------~~A~~~~~~al~l~P 329 (361)
++.+.. ++++| -.|.++.++++. ++|...|.++-.+-.
T Consensus 332 ~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 332 LKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred Hhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 997754 45544 458889999999 888888888766643
No 239
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.12 E-value=0.0024 Score=57.40 Aligned_cols=79 Identities=22% Similarity=0.189 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
+-.+.|.-..+.|+.++|...+..|++++|+++.++...|+....-++.-+|-.+|-+|+.++|.|.++..+.......
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~pl 196 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPL 196 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchH
Confidence 3455566667889999999999999999999999999999999999999999999999999999998887776654333
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.11 E-value=0.012 Score=49.85 Aligned_cols=108 Identities=30% Similarity=0.357 Sum_probs=84.4
Q ss_pred hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-chh
Q 018098 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVK 299 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~-~~k 299 (361)
.++..++++.|+..|.+++...+. .......+..++..+...++++.|+..+.+++...+. ...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 203 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH
Confidence 788999999999999999761110 0134445566666688889999999999999999998 689
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
++..++..+...+++++|+..+.+++...|........+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 99999999999999999999999999999874444444444433
No 241
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.10 E-value=0.0002 Score=65.14 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=71.6
Q ss_pred HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
+..|.++.|++.|..+|.++|...-.|-.+|.++..+++...|+.+|..|++++|+...-++..+.+++.+....++.+.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999888888888888887777665544
No 242
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.07 E-value=0.00092 Score=39.25 Aligned_cols=31 Identities=39% Similarity=0.702 Sum_probs=21.1
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
|+|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666667766666777777777766666665
No 243
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.07 E-value=0.012 Score=51.48 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=75.9
Q ss_pred hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHH
Q 018098 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-------KGALLDTEFA 290 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~Al~~~~~a 290 (361)
.+..+-....+++|++.|.-|+-..... ..-....+.++..+|.+|..+++. ..|+..|.+|
T Consensus 83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~-----------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a 151 (214)
T PF09986_consen 83 KPRDFSGERTLEEAIESYKLALLCAQIK-----------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA 151 (214)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 3446667789999999999998643211 001225677889999999999984 5566666666
Q ss_pred hhcCCC------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 291 MRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 291 l~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
+..... ....+|.+|.++..+|++++|+.+|.+.+..--.
T Consensus 152 ~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 152 YENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 654422 2688999999999999999999999999886433
No 244
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.00083 Score=63.79 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhh---------cCC---------CchhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR---------DGD---------DNVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~---------~~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 324 (361)
....|+|+|.+++.++.|.-++.+|.+||+ +.| .....+|+.|..|...|+.-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 345679999999999999999999999995 112 23689999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHH
Q 018098 325 LKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 325 l~l~P~~~~~~~~l~~~~~ 343 (361)
.+..-.|+.+|..++++--
T Consensus 362 v~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHhcCcHHHHHHHHHHH
Confidence 9999999999999998843
No 245
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0048 Score=53.82 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHh------------------hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAM------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al------------------~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 323 (361)
....++...|.-++++|+|.+|...|..|| +++......+.+.++|++..|+|-++++.+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 445677888999999999999999999998 23333456889999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 324 ALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 324 al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
.+..+|.|..++...++++...=..
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~ 280 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNE 280 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCH
Confidence 9999999988887777776654333
No 246
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.95 E-value=0.0051 Score=63.68 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL---------------- 327 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l---------------- 327 (361)
...|..+...+...|+++.|...++++++++|++...|..+..+|...|++++|.+.+++..+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~ 573 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence 3458888888889999999999999999999999999999999999999999999999887654
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHH
Q 018098 328 ----------EPNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 328 ----------~P~~~~~~~~l~~~~~~~~~ 347 (361)
+|...+++..+.++..++++
T Consensus 574 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 574 DHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred EEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 34445666666666666554
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.90 E-value=0.0016 Score=37.07 Aligned_cols=31 Identities=55% Similarity=0.927 Sum_probs=17.0
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
+++++|.++..++++++|+..|+++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555543
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.89 E-value=0.0016 Score=39.47 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=12.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098 301 LFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 301 ~~~~a~a~~~l~~~~~A~~~~~~al 325 (361)
|.++|.+|..+|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.89 E-value=0.0037 Score=57.45 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc-----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--
Q 018098 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-- 332 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~-- 332 (361)
......++.|++..+.++.++.+++.++...+.+.-.. ..++..+|.++..++.++++++.|++|++...++.
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 34556789999999999999999999999999775444 36777899999999999999999999999865432
Q ss_pred ----HHHHHHHHHHHHHHHHHHH
Q 018098 333 ----GIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 333 ----~~~~~l~~~~~~~~~~~~~ 351 (361)
.+...|+++-.++++++++
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Ka 181 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKA 181 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHH
Confidence 3566778888888887654
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.86 E-value=0.0019 Score=39.10 Aligned_cols=29 Identities=21% Similarity=0.105 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
+|.+||.+|.++|+|++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999999977554
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.86 E-value=0.0083 Score=52.94 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 334 (361)
+.-|++-|...+..|+|.+|+..++.+....|.+ .++..-++.+++..++|++|+...++.+++.|.++.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 4467888999999999999999999999988765 6899999999999999999999999999999987643
No 252
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.82 E-value=0.016 Score=48.97 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=79.9
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.-..+..+|..+++.|++++|++.|.++.++.. -......++.++-.+.+..++|..+..+..+|
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---------------~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCT---------------SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356788999999999999999999999888553 34566778899999999999999999999888
Q ss_pred hhcCCC----c--hhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 291 MRDGDD----N--VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 291 l~~~p~----~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
-.+-.. . .+.....|.+++..++|..|...|-.+..
T Consensus 100 ~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 100 ESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 865432 1 23334457778889999999998876643
No 253
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.81 E-value=0.0067 Score=45.17 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHH
Q 018098 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 283 Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~ 349 (361)
.+..++++++.+|++..+.|.+|.++...|++++|++-+-.+++.+++ +..+++.+-.+-..+....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 467789999999999999999999999999999999999999999986 4678888888877776543
No 254
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.011 Score=53.16 Aligned_cols=103 Identities=12% Similarity=0.011 Sum_probs=82.2
Q ss_pred hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhH
Q 018098 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~ 301 (361)
+.+..+|..||++...-.+ ..|.+...+..+|.||....+|..|...|++.-.+.|...+..
T Consensus 20 lI~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred HHHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 3567788888888776666 5666677889999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 302 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
+..|+.++..+.+.+|++...... +++..+...-+++..++
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence 999999999999999998665432 33445555545544443
No 255
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.03 Score=53.75 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHH
Q 018098 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a 307 (361)
...-...|+.|+. --+.+..+|.+......+.+.+.+.-..|.++|..+|+++..|..-|.=
T Consensus 87 ~~rIv~lyr~at~------------------rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w 148 (568)
T KOG2396|consen 87 PNRIVFLYRRATN------------------RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW 148 (568)
T ss_pred HHHHHHHHHHHHH------------------hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence 3445567888876 4445778888887777777889999999999999999999999999987
Q ss_pred HHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 308 YMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 308 ~~~l~~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
.+..+. .+.|.+.|.++++.+|+++.++...-.....--..-.++
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~r 194 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNR 194 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 777775 999999999999999999999888776655444433333
No 256
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.76 E-value=0.0021 Score=37.62 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
+++++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 68899999999999999999999999999974
No 257
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.029 Score=53.56 Aligned_cols=128 Identities=11% Similarity=0.098 Sum_probs=107.4
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+...|.---.++++..|-..|++||. .+..+.++|...+.+-++.+....|....++|+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAv 134 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV 134 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 34455556666678899999999999998 777889999999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
.+=|.-.+.||.--..-..+|+...|.+.|++=++..|+ ..++........+.++.+++ +..|.++
T Consensus 135 t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeiera-R~IYerf 200 (677)
T KOG1915|consen 135 TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERA-RSIYERF 200 (677)
T ss_pred HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999995 55777777776666665543 3445544
No 258
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.75 E-value=0.031 Score=46.96 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAK 342 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~-~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~ 342 (361)
-.+.||....++|++.+|...|++++. +--++...+..++++...++++..|...+++..+.+|. .++....++...
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 357789999999999999999999995 56678899999999999999999999999999999986 456666777776
Q ss_pred HHHHHHHH
Q 018098 343 KKIHERRE 350 (361)
Q Consensus 343 ~~~~~~~~ 350 (361)
...+....
T Consensus 171 aa~g~~a~ 178 (251)
T COG4700 171 AAQGKYAD 178 (251)
T ss_pred HhcCCchh
Confidence 66655543
No 259
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.014 Score=53.20 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=59.6
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
|.-+.+++-..+-.|+|..|+..-.+|+. ++|....+++.-|.|++.++++.+|+.+|+..+
T Consensus 119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~------------------~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 119 AVLYTNRAAAQLYLGNYRSALNDCSAALK------------------LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHh------------------cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 55677778888889999999999999998 999999999999999999999999999999997
Q ss_pred hcCC
Q 018098 292 RDGD 295 (361)
Q Consensus 292 ~~~p 295 (361)
.++.
T Consensus 181 ~~d~ 184 (390)
T KOG0551|consen 181 QIDD 184 (390)
T ss_pred hhhH
Confidence 7664
No 260
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.011 Score=57.57 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHH
Q 018098 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKI 345 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~ 345 (361)
+..|-|.+++++.++|+..++ -+++...+.+.-+|+.++.+++|++|+..|+...+.+-++ ...+.++..+...+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 578899999999999999988 6677778899999999999999999999999988877654 34444444444433
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.033 Score=50.12 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.5
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhh
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRY 241 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~ 241 (361)
.+.-+|..++..++|..|-.+|++.-..
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566888999999999999999987663
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.64 E-value=0.017 Score=52.72 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=91.1
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhh
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMR 292 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Al~~~~~al~ 292 (361)
.|....+..-+.+..+.|-..|.+|+. .......+|...|..-.+ .++.+.|...++.+++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk 64 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK------------------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK 64 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc------------------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345556677777889999999999986 333455678888888666 4666779999999999
Q ss_pred cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHH
Q 018098 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERR 349 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~ 349 (361)
.-|.+...|..-..-+..+++.+.|...|++++..-|.+. .++....+.+...++..
T Consensus 65 ~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 65 KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999888889999999999999999999887655 67777777766665443
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.63 E-value=0.02 Score=54.94 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=27.9
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 018098 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
+..|+|.+...+|+.++|++.+...++..|. +..++.+|.++...++.+.+.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 3344555555566666666666555555543 3445555555555554444433
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.61 E-value=0.0038 Score=35.41 Aligned_cols=32 Identities=31% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~ 296 (361)
.++.++|.++..++++++|+..++++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999999885
No 265
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.60 E-value=0.031 Score=59.62 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=69.1
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
...+|..+...|++++|...+.+++....... .......++.++|.++...|++++|...+.+++.+-
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHD------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34455555666677777776666665332110 011223466788899999999999999999888752
Q ss_pred CC--------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098 295 DD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 295 p~--------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 329 (361)
.. ....+..+|.++...|++++|...+.+++.+..
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 21 123455678888889999999999998887643
No 266
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.038 Score=49.36 Aligned_cols=82 Identities=20% Similarity=0.116 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (361)
.......+..|+=..++..++++.|+.+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..++..|+++.+....
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 34445567788888999999999999999999999999999999999999999999999999999999999987654443
Q ss_pred HH
Q 018098 339 AV 340 (361)
Q Consensus 339 ~~ 340 (361)
..
T Consensus 256 ~~ 257 (269)
T COG2912 256 AQ 257 (269)
T ss_pred HH
Confidence 33
No 267
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.04 Score=52.57 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=80.7
Q ss_pred HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH
Q 018098 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~ 303 (361)
...+.+.+...|+.+|+++++. .-..+.+|...|..-+++.+...|.+..-.||-+.|.. |.+-.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHk--------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~ 442 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHK--------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKG 442 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcc--------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHH
Confidence 4678888999999999977642 33556677777777777777788888777777777744 22222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 304 ~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
--..-.++++++.+...|++.++..|.|-.++...+++...+.+.+++.
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 2223446677777777788888888877777777777777777766543
No 268
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.56 E-value=0.042 Score=58.60 Aligned_cols=101 Identities=20% Similarity=0.102 Sum_probs=79.1
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
....|..++..|++++|...++++++..... .......++.++|.++...|++++|+..+.+++...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~ 521 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLT-------------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA 521 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3345677888999999999999998732110 112234567889999999999999999999999763
Q ss_pred CCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 295 DDN------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 295 p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
... ..++..+|.++...|++++|...+++++.+.
T Consensus 522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 321 3567788999999999999999999998873
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.46 E-value=0.23 Score=45.32 Aligned_cols=122 Identities=10% Similarity=0.036 Sum_probs=88.2
Q ss_pred CchHHHHhhhHHHHHhcchhHHhh-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChH
Q 018098 203 NELSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (361)
Q Consensus 203 ~~~~~~~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (361)
.++......+..+++.|..+++++ +|+.|+...++|.+++..... ..............++..++.+|+..+.++
T Consensus 26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~----~~~~~~~~~elr~~iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK----MDKLSPDGSELRLSILRLLANAYLEWDTYE 101 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh----ccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence 355666778999999999999999 999999999999998754211 112222366678889999999999988865
Q ss_pred HHHHHHHHHh----hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098 282 GALLDTEFAM----RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 282 ~Al~~~~~al----~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 329 (361)
...+ |..++ .-.|+.+..++-.=.++...++.+++.+.+.+.+.--+
T Consensus 102 ~~~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 102 SVEK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 4333 44443 44566666664444455557888888888888887654
No 270
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.049 Score=48.23 Aligned_cols=123 Identities=13% Similarity=0.237 Sum_probs=94.8
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.....+...+.+.-.|+|.-.+..|.+.++. ..+....+...++.+.++.|+.+.|-.+++.+
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----------------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-----------------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3445666788888899999999999999881 23566778888999999999999999999944
Q ss_pred h----hcCC--CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098 291 M----RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 291 l----~~~p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 350 (361)
- .++. .+.-+..+.+.+|...++|.+|...|.+++..||.++.+....+.|..=+.+...
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~D 304 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKD 304 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHH
Confidence 3 3332 3355677778888889999999999999999999988776666655544444433
No 271
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.068 Score=47.44 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHH-HHHHHHHhCCCCHHH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE-SFEKALKLEPNDGGI 334 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~-~~~~al~l~P~~~~~ 334 (361)
....++..|.|++.+++|++|....+.||..++.++..+.++-.+-..+|.-.++.. .+.+....+|..+-+
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 445678899999999999999999999999999999999999999999998877775 455555566766533
No 272
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.41 E-value=0.048 Score=50.86 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=82.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
.......+..+...|++++|.+.-.++++-. .++. +..+ .-..+.+++..=++..++.+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----------------~D~~----L~~~-~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ----------------WDPR----LCRL-IPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----------------cChh----HHHH-HhhcCCCCchHHHHHHHHHH
Confidence 4444455666778889999999999988721 2222 1111 12246688888888888888
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
+..|+++-.++.+|+.++..+.|.+|...|+.|++.-|+ ...+..++.+..++.+-.++
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence 888888888888888888888888888888888888774 34555666666665544443
No 273
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.40 E-value=0.12 Score=42.01 Aligned_cols=85 Identities=24% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCc----------------------hhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 269 NSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 269 nla~~~~~l~~~~~Al~~~~~al~~~p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
..|......++...++..+.+++.+.... ..++.+++.++...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 33555556778888888888888653211 45677788889999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 327 LEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 327 l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
++|.+..++..+..+....++..++.+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999888887765544
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.39 E-value=0.039 Score=53.11 Aligned_cols=116 Identities=16% Similarity=0.050 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCCcc---chh----HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--c
Q 018098 227 DYKMALRKYRKALRYLDICWEKEGIDEG---KSS----SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--N 297 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~--~ 297 (361)
-..+|.++|++|++..+........... ... ..-....-+-..+|.|..++|+.++|++.+...++..|. +
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 4688999999999877654333211111 000 011122455678999999999999999999999988775 4
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKALKL-EPNDGGIKKELAVAK 342 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~P~~~~~~~~l~~~~ 342 (361)
.-.++++-.++..+++|.++.+.+.+.-++ -|....+-...+.++
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 669999999999999999999999987544 255554444444433
No 275
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.28 E-value=0.0065 Score=52.50 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=56.0
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~ 332 (361)
...+.++.+.|.+.+.+|+++-|++...|+|+|......|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678999999999999999999999999999999999999999999999999999864
No 276
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.24 E-value=0.054 Score=58.33 Aligned_cols=29 Identities=3% Similarity=-0.150 Sum_probs=18.1
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
...+..+-..+.+.|++++|.+.|.+...
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566666666666666666666666543
No 277
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.19 E-value=0.06 Score=57.96 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=43.7
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR- 292 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~- 292 (361)
.+..+-..+.+.|++++|++.|.+....- +.| +...|+.+..+|.+.|++++|.+.+.+...
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~G----------------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKN----------------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444445566666666666666554310 111 122344444444444555555544444432
Q ss_pred ---cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 293 ---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 293 ---~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
+.|+ ...|..+-.+|...|++++|.+.|++..+.
T Consensus 572 ~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 572 THPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred cCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2222 233333444444444444444444444444
No 278
>PLN03077 Protein ECB2; Provisional
Probab=96.18 E-value=0.057 Score=57.38 Aligned_cols=61 Identities=7% Similarity=-0.036 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
.|..+-.++..-++.+.+....+++++++|+++..|..++.+|...|+|++|.+..+...+
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3444444445556666666677777777777777777777777777777777776655543
No 279
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.15 E-value=0.0085 Score=54.00 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=71.5
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
+.|......+....+.|+.++|...|+.|+. +.|.+..++..+|.....-++.-+|-++|-+
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 3455556667778899999999999999999 8899999999999999888999999999999
Q ss_pred HhhcCCCchhhHhHHHHH
Q 018098 290 AMRDGDDNVKALFRQGQA 307 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a 307 (361)
||.++|.|.+|+.+++..
T Consensus 176 ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 176 ALTISPGNSEALVNRART 193 (472)
T ss_pred eeeeCCCchHHHhhhhcc
Confidence 999999999999998864
No 280
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.11 E-value=0.025 Score=54.23 Aligned_cols=104 Identities=23% Similarity=0.397 Sum_probs=69.8
Q ss_pred eeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcc
Q 018098 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF 96 (361)
Q Consensus 17 ~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (361)
.-.+.+||..+ +|.++++|+.+.+.+ .++ +-+...-| .+..+.-|...+.|++
T Consensus 200 fTy~evE~~~~-~p~s~EH~la~~~~G-----------~~~---Vd~~tsTf------------i~d~~L~g~~~p~En~ 252 (503)
T TIGR03268 200 FTYVEVELDPN-APVSVEHFLALMEDG-----------TFR---VDYRTSTF------------ISDDSLRGLDKPEENI 252 (503)
T ss_pred EEEEEEEEcCC-CChhHHHHHHHHhCC-----------eEE---Eeeeecce------------EecccccCccCCcccc
Confidence 45788898777 999999999999876 332 11111111 1122334556677775
Q ss_pred ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhc
Q 018098 97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 97 ~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~ 152 (361)
. .-.+|+|++.+.|.. ....||-..+.+ -.-.|+|+|+|+.|+|+++-...
T Consensus 253 ~--~R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 253 E--KRRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred C--cccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 3 346799999998743 456788776654 23469999999999999886544
No 281
>PRK00969 hypothetical protein; Provisional
Probab=96.00 E-value=0.039 Score=53.09 Aligned_cols=104 Identities=26% Similarity=0.419 Sum_probs=70.4
Q ss_pred eeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcc
Q 018098 17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF 96 (361)
Q Consensus 17 ~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (361)
.-.+.+||..+ +|.++++|+.+.+.+ .|+ +-+...-| .+..+.-|...+.||+
T Consensus 203 fTy~eve~~~~-~p~s~EH~la~~~~G-----------~f~---Vd~~tstf------------I~d~~L~g~~~p~En~ 255 (508)
T PRK00969 203 FTYVEVELDPG-APKSVEHFLALLEDG-----------TFE---VDFETSTF------------IADDRLQGLKIPEENF 255 (508)
T ss_pred EEEEEEEEcCC-CCchHHHHHHHHhCC-----------eEE---Eeeeecce------------EeeccccCccCCcccc
Confidence 45788898877 999999999999876 332 11111111 1122334666677776
Q ss_pred ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhc
Q 018098 97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 97 ~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~ 152 (361)
. .-.+|+|++.+.|.. ....||-..+.+ -.-.|+|+|+|+.|+|+++-...
T Consensus 256 ~--~R~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 256 E--PRRRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred C--ccccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 3 345799999998744 456788776654 23469999999999999886544
No 282
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.96 E-value=0.046 Score=56.62 Aligned_cols=109 Identities=12% Similarity=-0.069 Sum_probs=65.2
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--C
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--G 294 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~--~ 294 (361)
.+-..|.+.|++++|.+.|++... .+...|+.+...|.+.|++++|+..+.+..+. .
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~---------------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPE---------------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 344567778888888888775422 23456667777777777777777777666543 2
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Q 018098 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKIHE 347 (361)
Q Consensus 295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~ 347 (361)
| +...|..+..++..+|++++|.+.+...++.. +.|..+...+.....+.++
T Consensus 323 p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 323 I-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred C-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence 3 33455666666666666666666666666554 2344444444444444333
No 283
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.84 E-value=0.041 Score=42.21 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=69.7
Q ss_pred hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHH----hcCChHHHHHHHHHHhhc
Q 018098 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL----KLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~----~l~~~~~Al~~~~~al~~ 293 (361)
++..++.+|++-+|++..+..+..-. .... ..-+......++..+|...- +..-.-.+++.+.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~------~~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG------EDES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc------CCCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence 45678899999999999999987211 0000 00133333344444443211 111145688999999999
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
.|..+..+|.+|.-+-....|+++..-.++++.+.
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999999988777888889988888888764
No 284
>PLN03077 Protein ECB2; Provisional
Probab=95.73 E-value=0.078 Score=56.32 Aligned_cols=138 Identities=14% Similarity=0.016 Sum_probs=79.1
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccC-------------CCCccch---hHHH-----HHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE-------------GIDEGKS---SSLR-----KTKSQIFTN 269 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~---~~~~-----~~~~~~~~n 269 (361)
....|..+...+.+.|+.++|++.|++..+. ...|+. ...++-. ..+. .-+...|..
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 3456888888899999999999999987651 000000 0000000 0000 011234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~ 349 (361)
+..++.+.|++++|.+.+++. .+.|+ +..|-.+-.++..-++.+.|....+++++++|++...+..+..+....++.+
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence 666666666666666666553 23442 3444444445555666666666666777777777777777777766655554
Q ss_pred HHH
Q 018098 350 EQE 352 (361)
Q Consensus 350 ~~~ 352 (361)
++.
T Consensus 709 ~a~ 711 (857)
T PLN03077 709 EVA 711 (857)
T ss_pred HHH
Confidence 433
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.11 Score=45.66 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=68.9
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--- 293 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~--- 293 (361)
..+-...+.-+.++|+..|++++.++.. ......-...+...+.++.+++.|.+|-..+.+-...
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~------------~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEE------------DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhc------------cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 3444455666778888888888875531 1134445567777888888999999987777665422
Q ss_pred ---CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 294 ---GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 294 ---~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
-++..+++.-.-.+|+..++|..|..+++...++.
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 23445666655666777789999999999887764
No 286
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.65 E-value=0.12 Score=50.86 Aligned_cols=83 Identities=19% Similarity=0.102 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 334 (361)
.-|...-.+...|.++...|+.++|++.+++++...... .-+++.+|.++..+.+|++|..++.+..+.+.-.+..
T Consensus 262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~ 341 (468)
T PF10300_consen 262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF 341 (468)
T ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence 567778888999999999999999999999999654433 4578889999999999999999999999988776655
Q ss_pred HHHHHHH
Q 018098 335 KKELAVA 341 (361)
Q Consensus 335 ~~~l~~~ 341 (361)
+..+.-+
T Consensus 342 Y~Y~~a~ 348 (468)
T PF10300_consen 342 YAYLAAA 348 (468)
T ss_pred HHHHHHH
Confidence 4444333
No 287
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.033 Score=51.52 Aligned_cols=106 Identities=25% Similarity=0.413 Sum_probs=69.2
Q ss_pred eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098 15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE 94 (361)
Q Consensus 15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e 94 (361)
.-.-.+.+||.++ +|.++++|++|.+.+ -+ ||.- +..+-.+..+..+.+.+.|
T Consensus 200 rifTy~eve~s~n-sP~saEH~lalmedG-----------~l------ri~~---------~tntfis~~~lq~~~~~~e 252 (512)
T COG4070 200 RIFTYFEVELSRN-SPKSAEHFLALMEDG-----------TL------RIDV---------TTNTFISDDTLQEEKVPEE 252 (512)
T ss_pred EEEEEEEEEeCCC-CchhHHHHHHHhhcc-----------eE------EEEE---------eccceeeccccccccCChh
Confidence 3456788999888 999999999998865 11 2210 0011112223346667778
Q ss_pred ccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhc
Q 018098 95 NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 95 ~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~ 152 (361)
|+.+. .+|.+++.|.|-. ...-+|.-.+-+. .-.|.|+|+|++|+++++-...
T Consensus 253 n~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 253 NFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 87654 4799999888743 3456666544331 2358999999999998875544
No 288
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=95.61 E-value=0.072 Score=51.19 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcccc
Q 018098 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL 98 (361)
Q Consensus 19 ~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 98 (361)
=|.|+||.+.||.|+.-|++..--.... .| -.++|=..++.++-=|+. -++..+-+||.+-
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~~~---VG------~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~ 436 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKTKP---VG------RLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPE 436 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcccc---cc------eeEEEEEeCCeeEeccCc----------hhccccCCCCCCC
Confidence 5789999999999999999975432110 11 134555667754443332 1344466777766
Q ss_pred CCCCceEEEeecCCC---CCCCcceEEe--cCCC-CCCCCCceEEeEEEeChHHHHHHhc
Q 018098 99 KHERKGMLSMANAGP---NTNGSQFFIT--TTRT-SHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 99 ~~~~~g~l~~~~~~~---~~~~sqF~I~--~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~ 152 (361)
....+|.|+|.|... ...|-.|-=+ ++|. ..+++++ ++|+|+++++.|+++..
T Consensus 437 ~~V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence 677889999887642 1222222111 2332 2466654 45999999999887755
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.51 E-value=0.025 Score=34.81 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~ 293 (361)
.++.|+|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777754
No 290
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.47 Score=41.51 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=78.4
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.++-+..-||.+--.++|..|=..|.+|.++-.... ........|.-.+.||- ..+..+|+...+++
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~------------skhDaat~YveA~~cyk-k~~~~eAv~cL~~a 99 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG------------SKHDAATTYVEAANCYK-KVDPEEAVNCLEKA 99 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC------------CchhHHHHHHHHHHHhh-ccChHHHHHHHHHH
Confidence 455555566666667889999999998887332110 12234567787888874 45999999999999
Q ss_pred hhcCCCc------hhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC
Q 018098 291 MRDGDDN------VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 291 l~~~p~~------~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~~ 331 (361)
+++-.+- ++-+.-+|..|..- .++++|+..|+.+-+.-..+
T Consensus 100 ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 9886543 45566778888764 89999999999998876543
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.22 Score=45.70 Aligned_cols=58 Identities=10% Similarity=-0.078 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 323 (361)
+.--+|.+..+.|-|++|.+..++|++++|.+..+...++-++...+++.++.+...+
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 3344555666666666666666666666666666666666666666666666665544
No 292
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.48 E-value=0.023 Score=54.31 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=76.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHh-hhccccccCCCCccchhH-HHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKEGIDEGKSSS-LRKTKSQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~l~~~~~Al~~~~ 288 (361)
....+.++|-++|+.+.|.-++.+|.+|++ .+.-+... ..+....+ .......+++|.|..|+..|+.-.|-+.+.
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g--~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG--LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc--CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 345568999999999999999999999996 22211111 11111111 233456789999999999999999999999
Q ss_pred HHhhcCCCchhhHhHHHHHHHhc
Q 018098 289 FAMRDGDDNVKALFRQGQAYMAL 311 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~a~a~~~l 311 (361)
++...--.|+..|.|+|.+..+.
T Consensus 360 ~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999889999999999988753
No 293
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.30 E-value=0.084 Score=37.76 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=55.3
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+....+.|..+|.+.+.++|+..++++|+-.. -.+....++--+..+|...|+|.+++.+...=
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999998332 23456677888889999999999999888766
Q ss_pred hhc
Q 018098 291 MRD 293 (361)
Q Consensus 291 l~~ 293 (361)
+.+
T Consensus 70 ~~~ 72 (80)
T PF10579_consen 70 LEI 72 (80)
T ss_pred HHH
Confidence 544
No 294
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.26 E-value=0.38 Score=43.90 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=78.9
Q ss_pred HHHHHhcchhHH-hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 213 DSIKVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 213 ~~~~~~G~~~~~-~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
..+...|..-+. .++.+.|...|+.+++ .-+.+...|......++++++.+.|...+++++
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLK------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHH------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 345555555455 6777779999999999 667778888888899999999999999999999
Q ss_pred hcCCCch---hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098 292 RDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 292 ~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 336 (361)
..-|... ..|-+...-=...|+.+......+++.++.|.+..+..
T Consensus 98 ~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 98 SSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp CTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8766554 35555555556679999999999999999988654443
No 295
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.21 E-value=0.072 Score=52.16 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=93.1
Q ss_pred HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH
Q 018098 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~ 303 (361)
-+|+..+|+.+|..|+-.... -..-.++..+|.+..+.|.-.+|--.+..|+.-.|.-..-+|-
T Consensus 225 ~~G~~~~A~~Ca~~a~hf~~~----------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~ 288 (886)
T KOG4507|consen 225 IKGEPYQAVECAMRALHFSSR----------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYT 288 (886)
T ss_pred HcCChhhhhHHHHHHhhhCCc----------------ccccchhhhHHHHHHHcccccchhheeehhccCCcccccccee
Confidence 478899999999999974421 1233567889999999999999988888888888877777999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGI---KKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 304 ~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~---~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
+|+++.+++++.....+|..+.+..|..... ......|+.++.+.-+++++..+.|
T Consensus 289 l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~ 347 (886)
T KOG4507|consen 289 LGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT 347 (886)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999974322 3444455666666666665555544
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=1.1 Score=39.60 Aligned_cols=108 Identities=12% Similarity=0.055 Sum_probs=72.2
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+..+..-++.+-..++|++|..+..+|.+.-+. ...--.-+.+|-..+...-++..+.++...+++|.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn------------nrslfhAAKayEqaamLake~~klsEvvdl~eKAs 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------------NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------------cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555566666788999999999999862210 00111234556667777778899999999999999
Q ss_pred hcC-----CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098 292 RDG-----DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331 (361)
Q Consensus 292 ~~~-----p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~ 331 (361)
.+. |+-+..-.-+|-=....-+.++|++.|++++.+-..+
T Consensus 99 ~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 764 3333333333333455678999999999998876543
No 297
>PRK10941 hypothetical protein; Provisional
Probab=95.05 E-value=0.1 Score=47.12 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=68.9
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
..-+.++=..+.+.++|+.|+.+-+..+. +.|.++.-+.-+|.+|.+++.+..|+.+++.-+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34456666788999999999999999998 888888889999999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAY 308 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~ 308 (361)
+..|+.+.+-.-+.++.
T Consensus 243 ~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 243 EQCPEDPISEMIRAQIH 259 (269)
T ss_pred HhCCCchhHHHHHHHHH
Confidence 99999988766665543
No 298
>PRK00969 hypothetical protein; Provisional
Probab=94.90 E-value=0.16 Score=49.04 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=69.9
Q ss_pred EEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcccc
Q 018098 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL 98 (361)
Q Consensus 19 ~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~ 98 (361)
=|.|+||.+.||.|+.-|+.+.--.... .| -.++|=..++.++-=|+.. ++..+-+||.+-
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~~~~---VG------~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~ 439 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLKTKP---VG------KLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPE 439 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCcccc---cc------eeEEEEEeCCeEEEccChh----------hccccCCCCCCC
Confidence 5789999999999999999986432110 11 1355556677555533322 344466787766
Q ss_pred CCCCceEEEeecCCCC---CCCcceEE--ecCCC-CCCCCCceEEeEEEeChHHHHHHhc
Q 018098 99 KHERKGMLSMANAGPN---TNGSQFFI--TTTRT-SHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 99 ~~~~~g~l~~~~~~~~---~~~sqF~I--~~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~ 152 (361)
....+|.|+|.|.... ..|=.|-= -++|. ..++++ -++|+|+ +++.|+++..
T Consensus 440 ~~V~ag~IgvTN~a~k~~G~iGVR~~d~d~fGPTGE~F~gT-NIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKGMIGVRLSDNDEFGPTGEPFEGT-NIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCc-eeEEEec-ChHHhccccc
Confidence 6778899998876421 11211111 02332 245564 4679999 9988887755
No 299
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.85 E-value=0.15 Score=47.84 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=88.0
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..+..+|..|...|+++.|++.|.++-.|+. .......++.|+-.+-..+++|...+.+-.+|..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT---------------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCT---------------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhc---------------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3567789999999999999999999877664 4556778899999999999999999999999987
Q ss_pred cC----C----CchhhHhHHHHHHHhcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHH
Q 018098 293 DG----D----DNVKALFRQGQAYMALNDVDAAVESFEKALK--------LEPNDGGIKKELAVA 341 (361)
Q Consensus 293 ~~----p----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~--------l~P~~~~~~~~l~~~ 341 (361)
.- . -.+++....|.+.+.+++|+.|.++|-.+.. +.|.|..+.-.+..+
T Consensus 216 t~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 216 TPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred CchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 62 1 1256777788899999999999998876533 235555555554443
No 300
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.83 E-value=0.17 Score=37.93 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=46.9
Q ss_pred hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p 295 (361)
..+.++|..|++.+.+..++....... ........++.++|.++...|++++|+..+++|+++-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~---------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNS---------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccc---------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 457899999999999988855321000 01223455678899999999999999999999997654
No 301
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.81 E-value=0.044 Score=47.55 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=55.4
Q ss_pred chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
..+.+.++.+.|.+.|.+++. +.|....-|..++....+.|+++.|...+.+.|+++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345678999999999999999 788889999999999999999999999999999999987
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.68 E-value=1.4 Score=40.07 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=77.2
Q ss_pred hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhc----CCC
Q 018098 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD----GDD 296 (361)
Q Consensus 222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al~~----~p~ 296 (361)
..++|+++.|..+|.|+-....... .......+..++|.|....+.+ +++.|+.+.++|+++ .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~----------~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLD----------PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCC----------cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 4578999999999999977443111 1134456778999999999999 999999999999977 321
Q ss_pred c----------hhhHhHHHHHHHhcCCHHH---HHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 297 N----------VKALFRQGQAYMALNDVDA---AVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 297 ~----------~ka~~~~a~a~~~l~~~~~---A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
. .+.+..++.+|...+.++. |...++.+-.-.|+.+.+....-++
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~i 130 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEI 130 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 1 4677778999999887764 4444444444457666665333333
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.083 Score=48.42 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc----hhh
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKA 300 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~----~ka 300 (361)
.|-|++|.+.-.+|++ +++.+..+....|.++...+++.++.+...+--..-... +.-
T Consensus 188 ~g~y~dAEk~A~ralq------------------iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN 249 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQ------------------INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN 249 (491)
T ss_pred hccchhHHHHHHhhcc------------------CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence 4555555555555555 555555555555555555556665555544332211111 122
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHH
Q 018098 301 LFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 301 ~~~~a~a~~~l~~~~~A~~~~~~ 323 (361)
|...|..+..-+.|+.|+..|.+
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHH
Confidence 33345555555566666555554
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.61 E-value=0.25 Score=44.71 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 258 ~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
.+......++..++..+...++++.++...++.+.++|.+.++|.++-.+|+..|+...|+..|++..++
T Consensus 147 ~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 147 ALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3667788899999999999999999999999999999999999999999999999999999999988774
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.57 E-value=0.074 Score=32.62 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=26.3
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 306
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.43 E-value=0.48 Score=51.08 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
...|..++...++..+-++|.....+||..-|. ..+.....|+.-+..|+-+.+...|+-.+.-.|.-.++|..+...
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 344555555555555555555555555555554 344444555555555555555555555555555555555554444
No 307
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.42 E-value=0.49 Score=51.05 Aligned_cols=84 Identities=15% Similarity=0.060 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAK 342 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~ 342 (361)
.+|..|+.+|.+-+.+++|.+.++.-++.-....+.|...|..++..++-+.|...+.+|++.-|. +..+....+.+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 467888999999999999999999999776688999999999999999999999999999999997 455555555555
Q ss_pred HHHHHH
Q 018098 343 KKIHER 348 (361)
Q Consensus 343 ~~~~~~ 348 (361)
-+..+.
T Consensus 1611 Fk~GDa 1616 (1710)
T KOG1070|consen 1611 FKYGDA 1616 (1710)
T ss_pred hhcCCc
Confidence 444443
No 308
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.42 E-value=0.1 Score=47.27 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR-QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 338 (361)
-+.++..|...+....+.+.|.+.-..|.++|..+|.|+..|.. -+--+...++++.|.+.|.++++++|.++.+|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34566778877777788899999999999999999999999887 45568889999999999999999999999998877
Q ss_pred HHHHHH
Q 018098 339 AVAKKK 344 (361)
Q Consensus 339 ~~~~~~ 344 (361)
-+.+..
T Consensus 183 fr~El~ 188 (435)
T COG5191 183 FRMELM 188 (435)
T ss_pred HHHHHH
Confidence 665443
No 309
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.39 E-value=0.26 Score=44.35 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 255 ~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
+...+.......+...|..|.+.|.+.+|++.|++++.++|-+...+.-+-..+..+|+--.|+..|++..+
T Consensus 270 ererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 270 ERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 334566677777778888999999999999999999999999999999999999999998888888877543
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=1 Score=38.32 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=81.5
Q ss_pred hcchhHHhhhHH---HHHHHHHHHHhhhccccccCCCCccchhHHHHHH------HHHHHHHHHHHHhcCChHHHHHHHH
Q 018098 218 FGNEHYKKQDYK---MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK------SQIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 218 ~G~~~~~~g~y~---~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~l~~~~~Al~~~~ 288 (361)
.|..++...+-+ +|-..|++++..+..-.+ ........+...+ .-+-..+|..+...+++++|+..++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~---~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~ 113 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP---KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 355555555444 788889999886642211 1111111122212 1233556778888999999999999
Q ss_pred HHhhcCCC-c--hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098 289 FAMRDGDD-N--VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353 (361)
Q Consensus 289 ~al~~~p~-~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k 353 (361)
.++..-.+ + .-+-.|+|.++..+|++++|+..+.....- .-...+....+.+...+.+.+++.+
T Consensus 114 ~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 114 QALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHH
Confidence 99965444 3 456688999999999999999888653221 1123345556666666555554443
No 311
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.37 E-value=0.083 Score=32.27 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=24.1
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 299 KALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
.+|.++|.+....++|++|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888888888888888888876
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.32 E-value=0.49 Score=44.25 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=79.4
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHh-hhcccccc--------------CCC-CccchhHHHHHHHHHHHHHHHHHHh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEK--------------EGI-DEGKSSSLRKTKSQIFTNSSACKLK 276 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~nla~~~~~ 276 (361)
....+.+..+...|+-.+|+...+..+. .+...... ... ..............++..+|.....
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 3445556666666677777777766665 22211000 000 0000122345566788888888888
Q ss_pred c------CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCH-----------------HHHHHHHHHHHHhCCC
Q 018098 277 L------GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV-----------------DAAVESFEKALKLEPN 330 (361)
Q Consensus 277 l------~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~-----------------~~A~~~~~~al~l~P~ 330 (361)
+ +..++++..|.+|+.++|.+.++|+..|..+..+=+. ..|+..|-+++.+.|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8 8899999999999999999999999999887654222 3588888888888876
No 313
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.25 E-value=0.41 Score=50.63 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=88.0
Q ss_pred HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc----C---ChHHHHHHHH
Q 018098 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----G---DLKGALLDTE 288 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~---~~~~Al~~~~ 288 (361)
.....++...+.|+.|+..|++...-.+. ...--.+....|.+.+.. + .+.+|+.-++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPG---------------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFS 543 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCC---------------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34456778899999999999997663321 111223555666665543 2 3666776666
Q ss_pred HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
+.-. .|.-+--|..+|.+|..+|+|++-+++|..|++.-|+.+.+-.....+--++.+.-...++
T Consensus 544 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (932)
T PRK13184 544 YLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRR 608 (932)
T ss_pred HhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 5443 3445667888899999999999999999999999999999988888887777766544433
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.25 E-value=0.37 Score=42.08 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=58.2
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~ 286 (361)
-.++.|-.+...|+......-+..|+..|.+|+. .+.... ..-....+.+-+|..+.++|++++|+.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~-------~e~~~~-----~~~~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE-------NEDFPI-----EGMDEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH-------hCcCCC-----CCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444566666666666666667777777777776 111100 1112345778899999999999999999
Q ss_pred HHHHhhcCCCch-hhHhHHHH
Q 018098 287 TEFAMRDGDDNV-KALFRQGQ 306 (361)
Q Consensus 287 ~~~al~~~p~~~-ka~~~~a~ 306 (361)
+.+++.....+. ..+..+|.
T Consensus 188 fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 188 FSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHcCCCCCCcHHHHHHHH
Confidence 999998764443 35555554
No 315
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.2 Score=46.58 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcE--EEeCCCCCCCCCCCCccCCCCCCCCcc
Q 018098 19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFM--IQGGDISAGDGTGGESIYGLKFEDENF 96 (361)
Q Consensus 19 ~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~~ 96 (361)
=|.||||.+.||.++.-|+.+..-. .. | --....|=+.++.. .--|+. .+++.+.+||.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~-~k------p--VGkL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLK-TK------P--VGKLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcccc-cc------c--ccceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence 4789999999999999999976532 11 1 11235666777732 222332 23555677777
Q ss_pred ccCCCCceEEEeecCC-CCC--CCcceEE--ecCCC-CCCCCCceEEeEEEeChHHHHHHhc
Q 018098 97 ELKHERKGMLSMANAG-PNT--NGSQFFI--TTTRT-SHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 97 ~~~~~~~g~l~~~~~~-~~~--~~sqF~I--~~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~ 152 (361)
.-....+|.|++.|.. ++. .|-..-= -++|. ..+.+ .-++|++++|.+-+..|..
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~GmIGVRL~dsdefGPTGE~Fe~-TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMGMIGVRLEDSDEFGPTGEKFEG-TNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccceeEEEeccccccCCCCCcccc-ceeehhhccChHHhccccc
Confidence 6666677777766543 221 1111000 01222 12444 5577999999999988866
No 316
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.04 E-value=0.34 Score=37.79 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=79.0
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF---- 289 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~---- 289 (361)
.+..+|+..++.+++-.|+-+|++|+.+.+..+.....+. .++--..+....|||..+..+|+-+-.+.|.+-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el---~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIEL---EDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccH---HHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4566888999999999999999999997766532222221 124445566688999999999999999998864
Q ss_pred HhhcCCCchhhHhHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 290 AMRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a-~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
++.+-|..+..- ..+ -..+|.-..|+-+| ++..| |+.+...+..
T Consensus 80 VltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~ 124 (140)
T PF10952_consen 80 VLTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQH 124 (140)
T ss_pred HHHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHh
Confidence 456777654321 122 23456666666555 55677 5666555443
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.02 E-value=0.34 Score=45.88 Aligned_cols=104 Identities=21% Similarity=0.048 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---------hc--
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---------RD-- 293 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al---------~~-- 293 (361)
...|.++-..|..++..... ..=-......|..+..+..++.++..+|+++.|.+.+++|| ..
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp------~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~ 80 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDP------NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP 80 (360)
T ss_pred CHHHHHHHHHHHHHHHccCH------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666666666652110 00000012567788889999999999999999999999998 22
Q ss_pred ---CCC------------c---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHH
Q 018098 294 ---GDD------------N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGI 334 (361)
Q Consensus 294 ---~p~------------~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~ 334 (361)
++. | ..++++....+.+.|.+..|++.++-.+.+||. |+-.
T Consensus 81 ~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 81 FRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred hhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 222 1 568899999999999999999999999999998 7643
No 318
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=2.1 Score=41.38 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=77.3
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+.-+|-....-+.|+.|..+|..|++... -....+-+..|+|..|+..++-+.- .++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---------------~~dl~a~~nlnlAi~YL~~~~~ed~----y~~ 426 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---------------SIDLQAFCNLNLAISYLRIGDAEDL----YKA 426 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---------------HHHHHHHHHHhHHHHHHHhccHHHH----HHH
Confidence 577778888888889999999999999998543 2344677889999999997765432 233
Q ss_pred h-hcCCCc----------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 291 M-RDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 291 l-~~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
+ .+.|.| .-++|-.|.-.+..+++.||...+.+.++..
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3 345553 4577888888899999999999999999987
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.56 E-value=0.6 Score=36.36 Aligned_cols=75 Identities=17% Similarity=0.053 Sum_probs=56.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
|-.+-.+.-.+...|+|++++..-.++|.|.+..-+.+ +.--...+.+.+++|.++..+|+.++|+..++++-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 45566677778889999999999999999887532222 12345677788999999999999999999999887
Q ss_pred hc
Q 018098 292 RD 293 (361)
Q Consensus 292 ~~ 293 (361)
++
T Consensus 128 EM 129 (144)
T PF12968_consen 128 EM 129 (144)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.48 E-value=0.71 Score=34.26 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
.+|.+..+.+.+|.+++..|++++|++.+-.+++.++.+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 788999999999999999999999999999999999877
No 321
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.35 E-value=0.36 Score=36.11 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=46.5
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCc---------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 274 KLKLGDLKGALLDTEFAMRDGDDN---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 274 ~~~l~~~~~Al~~~~~al~~~p~~---------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
..+.++|.+|++.+.+.+...... .-++.++|..+...|++++|+..+++|+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 457899999988888877543222 467888999999999999999999999998653
No 322
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.22 E-value=0.97 Score=37.26 Aligned_cols=83 Identities=16% Similarity=0.006 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
-...+..+..+-+..++.+++...++..-.+.|..+..-.--|..+...|+|.+|+..|+...+-.|..+.....++-|.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34455556666666677777776666666777777777777777777777777777777777666676666666666665
Q ss_pred HHH
Q 018098 343 KKI 345 (361)
Q Consensus 343 ~~~ 345 (361)
..+
T Consensus 89 ~~~ 91 (160)
T PF09613_consen 89 YAL 91 (160)
T ss_pred HHc
Confidence 444
No 323
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.20 E-value=3.4 Score=34.13 Aligned_cols=112 Identities=13% Similarity=-0.060 Sum_probs=82.4
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+.+........++.+++...+.-.-. +.|....+-.--|..++..|+|.+|+..+..+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrv------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRV------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45566677777778888888876654433 778888888889999999999999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
+-.|..+-+---++.|+..+++.+ =..+-..+++-.+ |+........+..
T Consensus 72 ~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 72 ERAPGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred ccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999988877778889999998764 1112233444443 6666655555543
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.20 E-value=4.6 Score=34.09 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 329 (361)
+.....++..+|.-|.+.|++++|++.|.++....... ...++++-.+....+++.....++.++-.+-.
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 44455789999999999999999999999988765432 56778888889999999999999999977653
No 325
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.06 E-value=3.2 Score=38.65 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGD------------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~------------~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
-+|.+..+|..+....-.+-. .+..+..+++||+.+|++.+.+..+=.+...+.+-++..+-+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677888888888776655533 46678899999999999999988888888899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 018098 327 LEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 327 l~P~~~~~~~~l~~~~~~ 344 (361)
.+|++..+|..+-.....
T Consensus 94 ~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQS 111 (321)
T ss_pred HCCCChHHHHHHHHHHHH
Confidence 999998888776555443
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.03 E-value=0.3 Score=29.43 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=19.3
Q ss_pred hhHhHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 018098 299 KALFRQGQAYMALNDVDAAVES--FEKALKLEPND 331 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~--~~~al~l~P~~ 331 (361)
+.++.+|..+..+|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3456666666777777777777 33666666543
No 327
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.85 E-value=1.4 Score=41.44 Aligned_cols=97 Identities=18% Similarity=0.019 Sum_probs=73.3
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+.++.-.+....-.|+|+.|...|+-.+. .......-+..|=.-...+|..+.|+.|..+|-
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa 181 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAA 181 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455566677789999999999998886 111221112222233346899999999999999
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
...|.-..++.-.-...+..|+|+.|++..+....
T Consensus 182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999888888889999999999998876544
No 328
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=0.6 Score=46.45 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (361)
++-|-|.-.++.++|..+++.|...++.-|.+ .|..-.++.||..+.+.+.|.+.++.|-+.+|.++-.+...-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 44566778889999999999999999876654 678888899999999999999999999999999876555544
Q ss_pred HH
Q 018098 340 VA 341 (361)
Q Consensus 340 ~~ 341 (361)
.+
T Consensus 436 ~~ 437 (872)
T KOG4814|consen 436 QS 437 (872)
T ss_pred HH
Confidence 43
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.71 E-value=1.5 Score=41.02 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=95.1
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+...+..+.+.|+++.|.....++..+... .......+..-.|......|+-.+|+......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~--------------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPS--------------SESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc--------------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677888999999999999999999988763211 01113445566677777888888888888777
Q ss_pred hhc--C--------------------------------CCchhhHhHHHHHHHhc------CCHHHHHHHHHHHHHhCCC
Q 018098 291 MRD--G--------------------------------DDNVKALFRQGQAYMAL------NDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 291 l~~--~--------------------------------p~~~ka~~~~a~a~~~l------~~~~~A~~~~~~al~l~P~ 330 (361)
+.. . ...+++++.+|.-...+ +..++++..|.++.+++|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 760 1 01157888888877777 8999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 018098 331 DGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~ 350 (361)
....+...+.....+-+...
T Consensus 291 ~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 291 WEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 88888888888777655444
No 330
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.45 E-value=1.1 Score=43.08 Aligned_cols=120 Identities=11% Similarity=0.130 Sum_probs=66.1
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc--CC-----hHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GD-----LKGAL 284 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~-----~~~Al 284 (361)
.......|..++..|+|.+|+..|+..|..+.-+.-.. .++..........|.-.+-.+-+++ +. .++..
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~---~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVES---REEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 34456679999999999999999999998765432222 2222233333333332222222222 22 12222
Q ss_pred HHHHHHh-----hcCCCchhhHhHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098 285 LDTEFAM-----RDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 285 ~~~~~al-----~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~P~~~~~ 334 (361)
..++-|. ++.|..--.-.|.|. ..+..++|..|....++.|++.|..+.+
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 2233332 445544444445554 3567899999999999999999976543
No 331
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.43 E-value=0.39 Score=49.36 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=71.8
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~ 296 (361)
-.|-.+++.|++++|..+.+ ++.. ..+++-..+--+-.||..++++++|...|++++..+|.
T Consensus 48 LkaLsl~r~gk~~ea~~~Le-~~~~-----------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKLLE-ALYG-----------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHhcCchhHHHHHh-hhcc-----------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 35678889999999995444 3331 22223445566789999999999999999999999998
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 297 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~ 332 (361)
.+-++.+-.+|.+-+.|.+=.+.--+..+..|.++
T Consensus 110 -eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 110 -EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 88888888889888877654444334445667765
No 332
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.36 E-value=2.1 Score=42.88 Aligned_cols=119 Identities=8% Similarity=0.050 Sum_probs=65.0
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
+.+..|.+-|..-++..+++.|+...++|......-...--+..+..+..--....+|...+..-..+|-++.....|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 36888888888888999999999999998763321110111122222222223344555555555555666666666666
Q ss_pred HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
.|.+-=-.+....+-|.-+.....+++|-+.|++.+.|.
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 665544444444444444444444444444444444443
No 333
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=92.34 E-value=2.5 Score=37.16 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=68.4
Q ss_pred HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC-hHHH-HHHHHHHhh-c-CCCch
Q 018098 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGA-LLDTEFAMR-D-GDDNV 298 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A-l~~~~~al~-~-~p~~~ 298 (361)
|..|+|+.|++.-.-||+.-..+ .+.-..+..-..+.-...-|....+.|. ++-. +..+..+.. . =|+.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~------Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v 167 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTM------PDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV 167 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCC------CccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH
Confidence 56799999999999998832211 1111112333334445555666666665 2222 222222211 1 13334
Q ss_pred --hhHhHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 299 --KALFRQGQAYM---------ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 299 --ka~~~~a~a~~---------~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
|.|--.|.++. ..++...|+..|++|++++|+ .-+.+.+..+..+++..
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 44444465552 456889999999999999975 44667777777776643
No 334
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.32 E-value=0.19 Score=30.72 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=28.0
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcc
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~ 244 (361)
|+.+..+|...+..++|++|+..|++||.+...
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999995543
No 335
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.24 E-value=0.48 Score=37.76 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHH
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a 305 (361)
.-.+.+.||.-+.++++|+.++.+++..|+.+|+|..|.-..-
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3457788999999999999999999999999999987765443
No 336
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=1.5 Score=43.34 Aligned_cols=101 Identities=21% Similarity=0.087 Sum_probs=77.4
Q ss_pred HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHhhcCCCchhhHh
Q 018098 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG-ALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~-Al~~~~~al~~~p~~~ka~~ 302 (361)
..+....|+.....++. .++....++.|++......+..-. ++..++.+....|.+.....
T Consensus 79 ~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 79 PLADSTLAFLAKRIPLS------------------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred ccccchhHHHHHhhhHh------------------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 34455555555666665 778888999999998888776544 45566669999999977666
Q ss_pred HH------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 303 RQ------GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 303 ~~------a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
.+ +.....+++..++...++++.++.|.++.+...+....
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 65 88888999999999999999999999877766666653
No 337
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.74 E-value=0.75 Score=32.90 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=30.5
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcc
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~ 244 (361)
..|..+...+..+=+.|+|++|+.+|.+|++++..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 35777888888899999999999999999998755
No 338
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.41 E-value=3.8 Score=37.28 Aligned_cols=106 Identities=24% Similarity=0.195 Sum_probs=77.8
Q ss_pred hHHHHHhcchhHH----hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHH-HHHHHHHHHHHHhc----C---C
Q 018098 212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKL----G---D 279 (361)
Q Consensus 212 a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l----~---~ 279 (361)
+.....+|..+.. ..++.+|..+|.+|.+ ..... ..+..+++.+|..- + +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~------------------~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAK------------------LGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH------------------cCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 4456667777766 5599999999999987 21111 34467777777653 1 2
Q ss_pred hHHHHHHHHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA 339 (361)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 339 (361)
...|+..+.++-... ++.+.+++|.+|.. -.++++|..+|+++.+... ......+.
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 347899999988877 88999999988754 3489999999999999875 55555555
No 339
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.33 E-value=0.95 Score=43.36 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=58.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHH
Q 018098 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----DGGIKKELAVAKKKIH 346 (361)
Q Consensus 271 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~----~~~~~~~l~~~~~~~~ 346 (361)
|.-....|+|.+|..++.=..+++| ++.++--+|.+++...+|++|..++.+ +-|+ |..+++.+.-|+..+-
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhhh
Confidence 4456678999999999999999999 999999999999999999999998864 4443 3456666766666554
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.30 E-value=4.1 Score=42.09 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh----------hcCCC----------chhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAM----------RDGDD----------NVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al----------~~~p~----------~~ka~~~~a~a~~~l~~~~~A~~~~~~a 324 (361)
.-|+|.|.-....++.+.|+++|+++= .-+|. +.+.|.+.|+-+...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 457888888888899999999998764 23333 3467777899999999999999999988
Q ss_pred HHh
Q 018098 325 LKL 327 (361)
Q Consensus 325 l~l 327 (361)
-..
T Consensus 939 ~D~ 941 (1416)
T KOG3617|consen 939 KDY 941 (1416)
T ss_pred hhh
Confidence 654
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.27 E-value=0.98 Score=46.37 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh---------------------hcCCCchhhHhHHHHHHHhcCCHHHHHHHHH
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAM---------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al---------------------~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~ 322 (361)
..+|.-.|+.....|+.+.|+.+|..|- .-...+-.|.|.+|..|...|++.+|+..|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3556666777777899999999998875 1223356789999999999999999999888
Q ss_pred HHHHh
Q 018098 323 KALKL 327 (361)
Q Consensus 323 ~al~l 327 (361)
+|-.+
T Consensus 992 rAqaf 996 (1416)
T KOG3617|consen 992 RAQAF 996 (1416)
T ss_pred HHHHH
Confidence 76543
No 342
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.26 E-value=2.8 Score=39.92 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=50.5
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355 (361)
Q Consensus 300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~ 355 (361)
.--.+..||+.+++.+.|+..-.+.+-++|....-+...+.+-+.++.+.++.+.+
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999988999999999999999888765
No 343
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.01 E-value=0.71 Score=44.09 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=77.4
Q ss_pred hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN 297 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~ 297 (361)
+-..+.-.|+|..|++..+- +++-. ........+-.+..++..|.||+.+++|.+|+..+..+|-.=-..
T Consensus 128 LlRvh~LLGDY~~Alk~l~~-idl~~---------~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN-IDLNK---------KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc-cCccc---------chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445567888888876433 22100 011112345667789999999999999999999999998432111
Q ss_pred hhhHhHHHHHHHh-cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc
Q 018098 298 VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPN--DGGIKKELAVA-KKKIHERREQEKKQYRKMF 360 (361)
Q Consensus 298 ~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~-~~~~~~~~~~~k~~~~~~f 360 (361)
-..+..+..-+-. .+..|+....+--++.+.|. +..+...+.+- ..++.+.++-..+.|..+|
T Consensus 198 k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF 264 (404)
T PF10255_consen 198 KNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF 264 (404)
T ss_pred hhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1122222222222 35667777788888888885 44444444333 3334444444455566555
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.84 E-value=0.34 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=14.6
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHH
Q 018098 299 KALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~~~ 322 (361)
.+.+.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666665543
No 345
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.80 E-value=5 Score=37.98 Aligned_cols=110 Identities=19% Similarity=0.122 Sum_probs=76.9
Q ss_pred chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh
Q 018098 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299 (361)
Q Consensus 220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k 299 (361)
...+..|+|+.|+...+........ + ....+.....++.-.+.... --+...|..+..+++++.|+-+.
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vi---e-------~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvP 264 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVI---E-------KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVP 264 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhh---c-------hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccch
Confidence 3456778888888887665541100 0 00122233334443333322 24688999999999999999999
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
+-.--+.+++..|+..++-..++.+-+.+|+ +++...+..+
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a 305 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA 305 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh
Confidence 9999999999999999999999999999984 5555555443
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.67 E-value=2.3 Score=42.86 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=73.9
Q ss_pred HHHhcchhHHh----h-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC---ChHHHHHH
Q 018098 215 IKVFGNEHYKK----Q-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLD 286 (361)
Q Consensus 215 ~~~~G~~~~~~----g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Al~~ 286 (361)
...+|..+++. . ++..|+.+|.+|.+ + ....+.+++|.|+..-. ++..|..+
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~------------------~--g~~~a~~~lg~~~~~g~~~~d~~~A~~y 350 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE------------------L--GNPDAQYLLGVLYETGTKERDYRRAFEY 350 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHh------------------c--CCchHHHHHHHHHHcCCccccHHHHHHH
Confidence 44577777763 2 78889999999976 2 34457788999988765 67899999
Q ss_pred HHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 018098 287 TEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLE 328 (361)
Q Consensus 287 ~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~ 328 (361)
|..|.... .+.|.+++|.+|.. ..+.+.|..+++++.+.+
T Consensus 351 y~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 351 YSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99998876 78999999998875 348899999999999987
No 347
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.59 E-value=0.98 Score=44.06 Aligned_cols=76 Identities=22% Similarity=0.150 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098 277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL---NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE 352 (361)
Q Consensus 277 l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l---~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 352 (361)
...+..|+.+|.+++...|.....|-++|.+++.. |+--.|+.++..|++++|....++..|+++...+...+++.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 34567899999999999999999999999998875 47778999999999999999999999999988888777654
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.59 E-value=6.5 Score=40.15 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=89.7
Q ss_pred hhHHHHHhcchhH-HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 211 ~a~~~~~~G~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
.|.....+|..++ ...+++.|..+.+|++.++.. ..+......+..-++.++.+.+... |+..+++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~ 124 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER------------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDK 124 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence 5788899999998 688999999999999886532 1255556667777799998888777 9999999
Q ss_pred HhhcCCC----chhhHhHHHHH--HHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 018098 290 AMRDGDD----NVKALFRQGQA--YMALNDVDAAVESFEKALKLE--PNDGGIKKELAVAKKKI 345 (361)
Q Consensus 290 al~~~p~----~~ka~~~~a~a--~~~l~~~~~A~~~~~~al~l~--P~~~~~~~~l~~~~~~~ 345 (361)
+|+.-.. .+...+++-.+ +...+++..|++.++....+. +.++.+.....-....+
T Consensus 125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 9976554 34555555433 223379999999999998887 46776655554444443
No 349
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.30 E-value=1.3 Score=30.95 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=31.3
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~ 247 (361)
+.|..+...|..+=+.|+|++|+.+|.+|++++.....
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45677778888888999999999999999998765433
No 350
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.27 E-value=8 Score=35.58 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------Cc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHH--hC
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD------DN--VKALFRQGQAYMALNDVDAAVESFEKALK--LE 328 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p------~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~--l~ 328 (361)
....-..+...||..|.+.++|..|.+... ++.++. .+ ...+.++|.+|...++-.+|..+..++-- .+
T Consensus 98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 98 FEEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 455667788999999999999999855432 333332 01 34567889999999999999999998743 34
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018098 329 PNDGGIKKELAVAKKKIHERREQEKKQYRK 358 (361)
Q Consensus 329 P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~ 358 (361)
..|+.....+..|..+.-+++++--...++
T Consensus 177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqr 206 (399)
T KOG1497|consen 177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQR 206 (399)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999888877755444443
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.14 E-value=1 Score=28.43 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=20.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 302 FRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 302 ~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
+.+|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888774
No 352
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.79 E-value=0.66 Score=44.31 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh--------hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAM--------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al--------~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
.+..|..++.-+|+|..|++..+-.= +.-+..+..+|..|-||+++++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888999999998765432 22233578899999999999999999999988764
No 353
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.72 E-value=1.3 Score=39.99 Aligned_cols=62 Identities=16% Similarity=-0.064 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 283 Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
|+.+|.+|+.+.|.+-..|..+|.++...|+.=+|+-+|-+++-..-..+.+..++..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997764567788888777666
No 354
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=7.4 Score=34.87 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=83.9
Q ss_pred HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCchhhHh
Q 018098 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al~~~p~~~ka~~ 302 (361)
+..+-..|+..-..+|+ ++|-+-++|.-+-.|...++ +..+-+++.++++.-+|.|...|.
T Consensus 55 ~~E~S~RAl~LT~d~i~------------------lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWH 116 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIR------------------LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWH 116 (318)
T ss_pred ccccCHHHHHHHHHHHH------------------hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHH
Confidence 34455678888888888 78888888888888887774 677888899999999999999999
Q ss_pred HHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 303 RQGQAYMALNDVD-AAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 303 ~~a~a~~~l~~~~-~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
.|-.+...+|++. .-+...++++..+..|=-++....=+.+..+..
T Consensus 117 HRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 117 HRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence 9988888889888 788888888888877766666655555544443
No 355
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.23 E-value=1.9 Score=30.69 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=30.8
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
+.|..+...+..+=+.|+|.+|+.+|++|++++..+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 357778888889999999999999999999977644
No 356
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=6.8 Score=37.20 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=82.5
Q ss_pred HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCCchhhH
Q 018098 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGDDNVKAL 301 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~Al~~~~~al~~~p~~~ka~ 301 (361)
+..-+++-+.+-..+|. .+|..-.+|+.+..+..+.. ++..-++.|.++|+.||.|..+|
T Consensus 87 k~~~ld~eL~~~~~~L~------------------~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 87 KQALLDEELKYVESALK------------------VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred HHHhhHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 34466777788888888 88999999999999998775 47899999999999999998887
Q ss_pred hHHHHHHH-hcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 302 FRQGQAYM-ALND---VDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 302 ~~~a~a~~-~l~~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
..|=.+.. .... ..+-+++..+++.-++.|=.+|.....+...+
T Consensus 149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 65533333 3333 67888999999999999988888877776644
No 357
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.84 E-value=1.2 Score=26.72 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH--HHhhcCCCc
Q 018098 266 IFTNSSACKLKLGDLKGALLDTE--FAMRDGDDN 297 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~--~al~~~p~~ 297 (361)
.+..+|.++...|+|++|+..++ -+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 46778999999999999999955 888888764
No 358
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.84 E-value=4.1 Score=38.62 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=67.7
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHh-h
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK---LGDLKGALLDTEFAM-R 292 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---l~~~~~Al~~~~~al-~ 292 (361)
++=-.|-.-++|+.-++..+..-. +++. .-+....+...+|.++.+ .|+.++|+..+..++ .
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~-~p~~-------------~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~ 211 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEA-LPTC-------------DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES 211 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhc-cCcc-------------chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc
Confidence 333344555666666665554332 1111 022234455667777777 899999999999955 5
Q ss_pred cCCCchhhHhHHHHHHHh---------cCCHHHHHHHHHHHHHhCCC
Q 018098 293 DGDDNVKALFRQGQAYMA---------LNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 293 ~~p~~~ka~~~~a~a~~~---------l~~~~~A~~~~~~al~l~P~ 330 (361)
..+.++..+--.|.+|.. ....++|+..|.++.+++|+
T Consensus 212 ~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 212 DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 566778888888888864 23578999999999999986
No 359
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.80 E-value=8.7 Score=39.24 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=83.2
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc-ccCCCCccc-------hhHHHHHHHHHHHHHHHHHHhcCChHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-EKEGIDEGK-------SSSLRKTKSQIFTNSSACKLKLGDLKGA 283 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~nla~~~~~l~~~~~A 283 (361)
+-.+.-.|......+..++|.+++.++++.+.... ..+...... ...+......++...+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 55666778888888988899999999999888765 111111111 1233444556677788888999999999
Q ss_pred HHHHHHHhhcC---C------CchhhHhHHHHHHHhcCCHHHHHHHHH
Q 018098 284 LLDTEFAMRDG---D------DNVKALFRQGQAYMALNDVDAAVESFE 322 (361)
Q Consensus 284 l~~~~~al~~~---p------~~~ka~~~~a~a~~~l~~~~~A~~~~~ 322 (361)
......+.... | ..+..+|-.|..+...|+.+.|...|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 88888777542 2 247889999999999999999999998
No 360
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.43 E-value=6.6 Score=38.92 Aligned_cols=119 Identities=19% Similarity=0.020 Sum_probs=82.6
Q ss_pred HhcchhH---HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--
Q 018098 217 VFGNEHY---KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM-- 291 (361)
Q Consensus 217 ~~G~~~~---~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al-- 291 (361)
..|..+| ....|++|-..|.-|+.... +..--......|..+..+.-+|.++...|+.+.|....+++|
T Consensus 240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d------~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~ 313 (665)
T KOG2422|consen 240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHD------PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYV 313 (665)
T ss_pred cCceeEEEeecchHHHHHHHHHHHHHhhcC------CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3444444 35567778777777766321 111111222457788889999999999999888777777776
Q ss_pred -------h------------cCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 018098 292 -------R------------DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVA 341 (361)
Q Consensus 292 -------~------------~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~~~l~~~ 341 (361)
. +.|.| ..++|+.-+.+...|.+.-|.++++..+.++|. |+.....+...
T Consensus 314 ~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~ 386 (665)
T KOG2422|consen 314 FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI 386 (665)
T ss_pred HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH
Confidence 1 12233 567788888888999999999999999999998 87655554444
No 361
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.20 E-value=5.2 Score=40.30 Aligned_cols=116 Identities=20% Similarity=0.050 Sum_probs=83.1
Q ss_pred hHHHHHhcchhHH-----hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-----ChH
Q 018098 212 VDSIKVFGNEHYK-----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK 281 (361)
Q Consensus 212 a~~~~~~G~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~ 281 (361)
+.+...+|..++. .++.+.|+.+|+.+.+-.... .......+.+.+|.||.+-. ++.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-------------a~~~~~~a~~~lg~~Y~~g~~~~~~d~~ 310 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-------------ATKGLPPAQYGLGRLYLQGLGVEKIDYE 310 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-------------HhhcCCccccHHHHHHhcCCCCccccHH
Confidence 4455556665553 478999999999997610000 11113446788999998843 688
Q ss_pred HHHHHHHHHhhcCCCchhhHhHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
.|+.++.++-.++ ++.+.+++|.++..-. ++..|..+|..|.+.- +..+...++.+...
T Consensus 311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL 372 (552)
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence 8999999999887 6788999999988765 6789999999998763 55566666665443
No 362
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=88.12 E-value=3.3 Score=44.74 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=84.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+....+.|......+.|.+|.+ ..+++.++... ...+.+....+|..+|..+.+++++++|+..+.+|
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v----------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka 999 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV----------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA 999 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh----------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence 56677788888888888888888 55555533211 11367888999999999999999999999999999
Q ss_pred hhcC--------CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 291 l~~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
.-+. |+...+|-+++...+..++...|+..+.+++++
T Consensus 1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 8442 445788999999999999999999999998886
No 363
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=4.1 Score=40.40 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=60.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKEL 338 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~-al~l~P~~~~~~~~l 338 (361)
++..+..++....+......++..+|.+++++.++|.+....|..-.++..+.. +....|.|..+...+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 788888899999999999999999999999999999999888877777766655 899999998887777
No 364
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.88 E-value=2.8 Score=37.48 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~ 323 (361)
....+...+|.-|+++|+|++|+..++.+....... ...+..+..|+..+|+.++.+...-+
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444556677777777777777777777777553221 45566666777777777766665433
No 365
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.87 E-value=19 Score=36.45 Aligned_cols=115 Identities=14% Similarity=0.062 Sum_probs=82.7
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
..|.-.+...-.-|=++.-...|.+.++ +.--.+.+..|.|..+..-.-++++-+.|++.+.
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriid------------------LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIID------------------LRIATPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 3343344444455677777888999888 5556677788999988888889999999999998
Q ss_pred cCCC-c----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 018098 293 DGDD-N----VKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKI 345 (361)
Q Consensus 293 ~~p~-~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~ 345 (361)
+-|. + +-.|.......+.--..+.|...|++|++..|. -+.+....+.+.++.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 8642 1 345556677777777999999999999999984 234444555554444
No 366
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.69 E-value=1.2 Score=39.95 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=64.0
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
..+.=..+...++++.|..+-++.+. ++|.+..-+.-+|.+|.++|-+..|+++++..++..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 34445567789999999999999998 788888888999999999999999999999999999
Q ss_pred CCchhhHhHHHHH
Q 018098 295 DDNVKALFRQGQA 307 (361)
Q Consensus 295 p~~~ka~~~~a~a 307 (361)
|+.+.+-.-+++.
T Consensus 246 P~~~~a~~ir~~l 258 (269)
T COG2912 246 PDDPIAEMIRAQL 258 (269)
T ss_pred CCchHHHHHHHHH
Confidence 9988776665543
No 367
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=5.8 Score=35.48 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=72.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 272 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 350 (361)
+++.+-..-..|++....+|.++|-+..+|..|-.++..+ .+..+-+.++...++-+|.|=.++.....+-+.+....-
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 4455667788999999999999999988887777766665 488999999999999999999999888888877775554
Q ss_pred HHHHHHhhhc
Q 018098 351 QEKKQYRKMF 360 (361)
Q Consensus 351 ~~k~~~~~~f 360 (361)
.+-.+.++|+
T Consensus 131 rELef~~~~l 140 (318)
T KOG0530|consen 131 RELEFTKLML 140 (318)
T ss_pred chHHHHHHHH
Confidence 5566666655
No 368
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.38 E-value=2.6 Score=34.10 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=20.7
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
...+|...+..|+|.-|+..++.++..+|+|..++..++.+...+.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555444444443
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.35 E-value=5.6 Score=34.63 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=54.9
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
-.++-+...+||.....-++-.|.+.-...-+-+.+.-.|+|++|+.-++-+-+++|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3456788999999999999999999988888889999999999999999999999998653
No 370
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.07 E-value=4.9 Score=36.55 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=47.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 323 (361)
-+.-.+..+++.+|...+..++..+|.+..+...++.+|...|+.+.|...+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344456789999999999999999999999999999999999999988876654
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.02 E-value=17 Score=34.52 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=75.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCC------CCc-----cchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG------IDE-----GKSSSLRKTKSQIFTNSSACKLKLGDL 280 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~nla~~~~~l~~~ 280 (361)
+..+...+.++..+|++..|.+..++||-.++......- ... .-....+.....++........+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 566777788888888888888888888776653322110 000 000112333445566667788889999
Q ss_pred HHHHHHHHHHhhcCCC-ch-hhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 281 KGALLDTEFAMRDGDD-NV-KALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 281 ~~Al~~~~~al~~~p~-~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
.-|+++|.-.+.+||. ++ -+++.+=......++|+--+..++....
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999999 43 3445555555666788767776666544
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.95 E-value=31 Score=36.18 Aligned_cols=108 Identities=13% Similarity=0.027 Sum_probs=80.1
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
+.-....+..+....+|.+|.....++..-++.- . .............-+|.+....+++++|+..+..++
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~----~-----~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAP----M-----HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcC----c-----ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444455667777888998888887776633321 0 001223344555667888888999999999999999
Q ss_pred hcCCCc-----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 292 RDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 292 ~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
..=|.+ .-++...|.+..-.|++++|..+...+.++.
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 877665 5678888999999999999999999998874
No 373
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.88 E-value=19 Score=34.15 Aligned_cols=85 Identities=14% Similarity=-0.008 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCCchhhHhHHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHH
Q 018098 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMA---LNDVDAAVESFEK-ALKLEPNDGG 333 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~----~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~-al~l~P~~~~ 333 (361)
.......|+-.+|....+|+.-++..+..-.+ -++.....+..|.|+.. .|+.++|+..+.. .....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34456678888999999999999988887776 44566777788888888 9999999999999 4555667899
Q ss_pred HHHHHHHHHHHHH
Q 018098 334 IKKELAVAKKKIH 346 (361)
Q Consensus 334 ~~~~l~~~~~~~~ 346 (361)
+.-.++.+.+.+-
T Consensus 219 ~~gL~GRIyKD~~ 231 (374)
T PF13281_consen 219 TLGLLGRIYKDLF 231 (374)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 374
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.77 E-value=1.6 Score=31.26 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=30.6
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (361)
.|..+...|..+=+.|+|++|+.+|.++|+++....
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 466777888888999999999999999999876543
No 375
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.62 E-value=12 Score=28.89 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=60.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCch---hhHhHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIK 335 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~---ka~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~ 335 (361)
+|.-++..|++-+|++..+..+...+++. -.+...|.++..+.. .-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999999888775 345555777765432 2478999999999999886666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018098 336 KELAVAKKKIHERREQE 352 (361)
Q Consensus 336 ~~l~~~~~~~~~~~~~~ 352 (361)
..++.-.....-+++.-
T Consensus 82 ~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 66655544444454433
No 376
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.59 E-value=6.9 Score=27.87 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 018098 303 RQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 303 ~~a~a~~~l~~~~~A~~~~~~al 325 (361)
.+|.-+-..|++++|+.+|++++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33334444444444444444433
No 377
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.51 E-value=7.4 Score=31.73 Aligned_cols=83 Identities=13% Similarity=-0.072 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK 343 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~ 343 (361)
...+.....+-+...+.+++....+..=-+.|+.+..-.--|..+...|+|.+|+..|....+-.+..+-....++-|..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 33444455555557777777777666667778887777777888888888888888887777666666666666666655
Q ss_pred HHH
Q 018098 344 KIH 346 (361)
Q Consensus 344 ~~~ 346 (361)
.++
T Consensus 90 al~ 92 (153)
T TIGR02561 90 AKG 92 (153)
T ss_pred hcC
Confidence 443
No 378
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.39 E-value=2.6 Score=40.45 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=50.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
...+.+.|..+|.+|+|.++.-+-.-..+ ..| .+.+|.-+|.|.+..++|++|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44566778889999999999988777777 667 7789999999999999999998887654
No 379
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=85.73 E-value=1.4 Score=39.33 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098 278 GDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351 (361)
Q Consensus 278 ~~~~~Al~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~ 351 (361)
-....|.+.++.||-+.... --+.++++.+|+.+.+|+.|..+|.+|+.+--+ ...-....++...+....++
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~-d~L~~We~rLet~L~~~~kk 131 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD-DTLPLWEDRLETKLNKKNKK 131 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHhHhhHh
Confidence 44678899999999664332 346789999999999999999999999998533 23333344444444444444
Q ss_pred HH
Q 018098 352 EK 353 (361)
Q Consensus 352 ~k 353 (361)
++
T Consensus 132 Q~ 133 (368)
T COG5091 132 QK 133 (368)
T ss_pred hc
Confidence 43
No 380
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.31 E-value=12 Score=33.88 Aligned_cols=96 Identities=25% Similarity=0.179 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCc-hh
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDN-VK 299 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Al~~~~~al~~~p~~-~k 299 (361)
.++..+|+..|..+.+ .....+.+++|.+|.. ..++.+|..++.+|.+..-.. ..
T Consensus 90 ~~~~~~A~~~~~~~a~--------------------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~ 149 (292)
T COG0790 90 SRDKTKAADWYRCAAA--------------------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL 149 (292)
T ss_pred cccHHHHHHHHHHHhh--------------------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH
Confidence 4567888888886543 3455677889999887 458999999999999886333 34
Q ss_pred hHhHHHHHHHhc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098 300 ALFRQGQAYMAL----N---DVDAAVESFEKALKLEPNDGGIKKELAVAK 342 (361)
Q Consensus 300 a~~~~a~a~~~l----~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~ 342 (361)
+.+++|.+|..- + +...|+..|.++.... +......++.+.
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 488888888764 1 3337888898888776 566666666554
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.23 E-value=1.1 Score=24.47 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTE 288 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~ 288 (361)
.+..++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367899999999999999998765
No 382
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.23 E-value=6.1 Score=42.80 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=94.3
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+..+..++..+.+.+++++|+..=.+|.-+.... .....+.....|.|++...+..++...|+..+.++
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~----------~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV----------LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechh----------ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 46677888899999999999999877776532211 11135677788999999999999999999999888
Q ss_pred hhc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHH
Q 018098 291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--------DGGIKKELAVAKKKIHER 348 (361)
Q Consensus 291 l~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--------~~~~~~~l~~~~~~~~~~ 348 (361)
+.+ .|.-.-...+++..+..+++++.|+.+++.|+.++-. +......++++...+++-
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~df 1115 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDF 1115 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHH
Confidence 844 4555566678888899999999999999999986532 233444455555544443
No 383
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.14 E-value=7.5 Score=34.68 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=35.2
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHH
Q 018098 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERR 349 (361)
Q Consensus 299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~------~~~~~~~l~~~~~~~~~~~ 349 (361)
.....+|.-|+.+|+|++|++.|+.+...--. ...+...+.+|...+++.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 45567899999999999999999998655322 2345556666655555443
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.09 E-value=4.9 Score=28.86 Aligned_cols=57 Identities=16% Similarity=-0.002 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCchh---hHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 271 SACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 271 a~~~~~l~~~~~Al~~~~~al~~~p~~~k---a~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
|.-+....+.++|+....++|+..++... ++=.+.+||...|+|++++++--+-+++
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445788899999999999998877654 4444667899999999999877665554
No 385
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.01 E-value=2.3 Score=30.33 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=30.8
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
..|..+...|...=..|+|++|+.+|..+|+++...
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999999999987654
No 386
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.60 E-value=2.4 Score=38.15 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHh
Q 018098 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA 310 (361)
Q Consensus 231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~ 310 (361)
|..+|.+|+. +.|.....|+.+|..+...++.-.|+-+|-+++...--.+.|.-++...+..
T Consensus 1 A~~~Y~~A~~------------------l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR------------------LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH------------------H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH------------------hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999 8888999999999999999999999999999997665567788888777776
No 387
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=14 Score=35.14 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHh------------cCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC--CHHHHHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLK------------LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKA 324 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~------------l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~a 324 (361)
-+|....+|+-+-.++.. ....++-+.+...+|+.+|+..-+|+.|..++.... ++..-++.++++
T Consensus 58 ~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~ 137 (421)
T KOG0529|consen 58 KNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKA 137 (421)
T ss_pred hCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 445555555554444332 234677788889999999999999999999998776 478889999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 325 LKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 325 l~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
++.||.|-..+....-+-...+..
T Consensus 138 L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 138 LKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HhcCcccccchHHHHHHHHHHhcc
Confidence 999999877776666665555444
No 388
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=84.26 E-value=2.6 Score=29.97 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=31.3
Q ss_pred HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
+..|..+...|...-..|+|++|+.+|.+|++++...
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3457778888888899999999999999999977654
No 389
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=84.23 E-value=21 Score=33.90 Aligned_cols=119 Identities=12% Similarity=0.021 Sum_probs=69.7
Q ss_pred HHHhhhHHHHHhcchhHHhh---------hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 018098 207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
-..+.+..++++|-.+.+.+ ..+.|..+|+.|.-...++...-..... ...+++....++..+..+..+.
T Consensus 109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~-~~Dl~~~~l~~L~~lmLAQAQE 187 (361)
T cd09239 109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYG-AVDMSSQLLSFNYSLMLAQAQE 187 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cccCCHHHHHHHHHHHHHHHHH
Confidence 55667888888888876544 3788889999888776655443111111 0135566666666655544332
Q ss_pred CChHH-----------------HHHHHHHHhhc------C---------CCc------------hhhHhHHHHHHHhcCC
Q 018098 278 GDLKG-----------------ALLDTEFAMRD------G---------DDN------------VKALFRQGQAYMALND 313 (361)
Q Consensus 278 ~~~~~-----------------Al~~~~~al~~------~---------p~~------------~ka~~~~a~a~~~l~~ 313 (361)
==|.+ +...|+.|+.. + ..+ +-++|+.|......++
T Consensus 188 c~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k 267 (361)
T cd09239 188 CLLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQK 267 (361)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22222 33445544432 1 111 3356777777777778
Q ss_pred HHHHHHHHHHHHH
Q 018098 314 VDAAVESFEKALK 326 (361)
Q Consensus 314 ~~~A~~~~~~al~ 326 (361)
+-++++.|+.|..
T Consensus 268 ~Ge~Ia~L~~A~~ 280 (361)
T cd09239 268 MGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887766
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.01 E-value=2.8 Score=23.53 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 312 NDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 312 ~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
|+.+.|...|++++...|.+..++......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777888888888888887777776654
No 391
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=83.98 E-value=5.6 Score=28.24 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=31.7
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK 248 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~ 248 (361)
..|..+...|..+=+.|+|++|+.+|.+|++++......
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~ 44 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKV 44 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 456677778888888999999999999999988765433
No 392
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.49 E-value=3.4 Score=29.29 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=30.1
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW 246 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~ 246 (361)
+.|..+...|...=+.|+|++|+.+|..|++++....
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3566677778888888999999999999999876543
No 393
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.47 E-value=1.8 Score=30.90 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=29.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcc
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~ 244 (361)
.+..+...|...=..|+|++|+.+|..|++++..
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 4666777788888999999999999999997754
No 394
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.28 E-value=4.2 Score=39.65 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
..|..||...+..|+++-|..+++++=
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 367777777777777777777776653
No 395
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=82.69 E-value=8.8 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=31.1
Q ss_pred hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc
Q 018098 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK 248 (361)
Q Consensus 210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~ 248 (361)
..|..+...|...-+.|+|++|+.+|..+++++......
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~ 42 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQG 42 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 356677777888888999999999999999987654333
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.65 E-value=3.3 Score=33.49 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~ 316 (361)
.....+|...+..|+|.-|+..++.++..+|++..+...++.++.+++.-.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3456777888899999999999999999999999999999999998876543
No 397
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.60 E-value=44 Score=32.80 Aligned_cols=103 Identities=18% Similarity=0.082 Sum_probs=75.5
Q ss_pred HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC---
Q 018098 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD---GDD--- 296 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~---~p~--- 296 (361)
.-.|-|++|.++=+++|.....+...+. ....+.-.....+-++..|.+-.|++.+|++....+... -|.
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~----~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~L 361 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADL----MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLL 361 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccc----hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHH
Confidence 3567888888888888875443322221 112355667788899999999999999998866666543 232
Q ss_pred ----chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098 297 ----NVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329 (361)
Q Consensus 297 ----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P 329 (361)
.+..++-+|.-....+.|+.|...|..|.++-.
T Consensus 362 lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 362 LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE 398 (629)
T ss_pred HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Confidence 366778888888889999999999999998864
No 398
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=82.59 E-value=11 Score=30.56 Aligned_cols=107 Identities=17% Similarity=0.067 Sum_probs=56.7
Q ss_pred eEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCc--EEEeCCCCCCCCCCCCccCCCCCCCCc
Q 018098 18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDEN 95 (361)
Q Consensus 18 G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~ 95 (361)
-.++.+|..|.||.||+.|++.- =|++..+|-...|- ++.-|++.. .+ .+-||
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~~-~~----------~~~EN 62 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFDP-FE----------PGREN 62 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-S-------------S-S
T ss_pred eEEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcCc-CC----------CCCCc
Confidence 46899999999999999999985 28999999988885 444465431 11 12344
Q ss_pred cccCCCCceEEEee---cCCCC--CC-CcceEEecCCC--------CCCCCCceEEeEEEeChHHHHHHhc
Q 018098 96 FELKHERKGMLSMA---NAGPN--TN-GSQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIEH 152 (361)
Q Consensus 96 ~~~~~~~~g~l~~~---~~~~~--~~-~sqF~I~~~~~--------~~ld~~~~vfG~V~~g~~vl~~i~~ 152 (361)
.. .+-.+|-|.+. ....+ .. =+..-|..+.. .++. -.+|++|.+|++-+.++-+
T Consensus 63 ~T-~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 63 HT-VTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR 130 (147)
T ss_dssp EE-SS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred Cc-ccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence 32 23346766555 11111 11 13344443322 2222 3689999999987666543
No 399
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.52 E-value=7.8 Score=31.57 Aligned_cols=82 Identities=13% Similarity=-0.061 Sum_probs=60.7
Q ss_pred HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD 295 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p 295 (361)
.+.........+.+++..... +++. +.|....+-.--+..++..|+|.+|+..+..+.+-.+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLd-ALrv-----------------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLD-ALRV-----------------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHH-----------------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 333334444666777665544 3442 5666777777778889999999999999999999988
Q ss_pred CchhhHhHHHHHHHhcCCHH
Q 018098 296 DNVKALFRQGQAYMALNDVD 315 (361)
Q Consensus 296 ~~~ka~~~~a~a~~~l~~~~ 315 (361)
..+-+.--++.|+..+|+.+
T Consensus 76 ~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 76 APPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CchHHHHHHHHHHHhcCChH
Confidence 88777777888899888764
No 400
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.50 E-value=5.7 Score=40.30 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=15.0
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHH
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKA 238 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~a 238 (361)
.+++++|..+.....|.+|.++|.++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555666666666666666554
No 401
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.43 E-value=3.2 Score=42.75 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=29.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhc
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~ 243 (361)
.++.++..|+.+|++|+|++|...|-+++..++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 467788899999999999999999999998665
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.39 E-value=3.7 Score=37.22 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=45.3
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 348 (361)
.+.+...+..|...|.+.+|++..++++.++|-+...++.+..+...+++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 456677789999999999999999999999999999999999888887763
No 403
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=81.81 E-value=1.1 Score=40.88 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=61.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHH-HHHHHHhcCChHHHHHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN-SSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-la~~~~~l~~~~~Al~~~~~a 290 (361)
...|....+...+.|-|.+-...|.+++. .+|+++.+|.. -+.-+...++++.|...+.++
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~------------------khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g 168 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLT------------------KHPLNVDLWIYCCAFELFEIANIESSRAMFLKG 168 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence 44566666667778889999999999998 88999988876 333455678999999999999
Q ss_pred hhcCCCchhhH---hHHHHHHH
Q 018098 291 MRDGDDNVKAL---FRQGQAYM 309 (361)
Q Consensus 291 l~~~p~~~ka~---~~~a~a~~ 309 (361)
|+++|++++.| +++-..|.
T Consensus 169 lR~N~~~p~iw~eyfr~El~yi 190 (435)
T COG5191 169 LRMNSRSPRIWIEYFRMELMYI 190 (435)
T ss_pred hccCCCCchHHHHHHHHHHHHH
Confidence 99999997755 44444443
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.49 E-value=19 Score=34.32 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 264 SQIFTNSSACKLKLGDLKGALLDTEFAMR----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
+.+.+-+-.+|+.-+.|+.|-..-.++-- .+..++..+|.+|.+..-+.+|..|.++|-.|+...|++..
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 34455566788888889998777666652 22245788899999999999999999999999999998544
No 405
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.10 E-value=9.4 Score=27.49 Aligned_cols=37 Identities=24% Similarity=0.106 Sum_probs=31.4
Q ss_pred HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
.+.|-.+.+.|..+=..|+.++|+.+|+++++.+...
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888899999999999999988654
No 406
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=81.06 E-value=25 Score=33.08 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=69.3
Q ss_pred HHHhhhHHHHHhcchhHHhh---------hHHHHHHHHHHHHhhhccccccC--CCCccchhHHHHHHHHHHHHHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~ 275 (361)
-..+.+..+++.|-.+.+.+ .++.|..+|++|.-+..++.+.- .........+++....++..+..+..
T Consensus 114 l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQA 193 (346)
T cd09240 114 LGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALMLAQA 193 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34456777777777665433 26889999999888776654421 00111112355556666666555443
Q ss_pred hcCChH-----------------HHHHHHHHHhhc----------CCCc------------hhhHhHHHHHHHhcCCHHH
Q 018098 276 KLGDLK-----------------GALLDTEFAMRD----------GDDN------------VKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 276 ~l~~~~-----------------~Al~~~~~al~~----------~p~~------------~ka~~~~a~a~~~l~~~~~ 316 (361)
+.==|. ++...|+.|+.. ...+ +.++|+.|..+...+++-+
T Consensus 194 QE~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~Ge 273 (346)
T cd09240 194 QEVFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGE 273 (346)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence 322222 223344444421 1111 3467778888888889999
Q ss_pred HHHHHHHHHHh
Q 018098 317 AVESFEKALKL 327 (361)
Q Consensus 317 A~~~~~~al~l 327 (361)
|+..|+.|.++
T Consensus 274 aIa~L~~A~~~ 284 (346)
T cd09240 274 EIARLQHALEL 284 (346)
T ss_pred HHHHHHHHHHH
Confidence 99988888763
No 407
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.22 E-value=20 Score=37.57 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=74.6
Q ss_pred HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-------CChH
Q 018098 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-------GDLK 281 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-------~~~~ 281 (361)
+.......+.|..+...|+|.+|+++|+..|-.+.-+.-+...+. ...+.....+...+...-+++ ...+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~---aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~ 1064 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEE---AEADELIKICREYIVGLSVELERRKLKKPNLE 1064 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhH---HHHHHHHHHHHHHHhhheeeeeecccCCchHH
Confidence 334556678899999999999999999999875554333322222 223333333322222222221 2233
Q ss_pred HH--HHHHHHHhhcCCCchhhHhHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098 282 GA--LLDTEFAMRDGDDNVKALFRQG-QAYMALNDVDAAVESFEKALKLEPNDGGIKK 336 (361)
Q Consensus 282 ~A--l~~~~~al~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 336 (361)
.+ +.+|=.-..+.|-..-.-.+.| .+++.++++..|.....+.+++.|..+.+..
T Consensus 1065 ~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1065 QQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 33 2233333456665433334444 4688999999999999999999997765443
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.17 E-value=3.6 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098 268 TNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Al~~~~~al~~ 293 (361)
+++|.+|+++|+++.|....++++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 68999999999999999999999954
No 409
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.31 E-value=36 Score=31.68 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098 225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304 (361)
Q Consensus 225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~ 304 (361)
..-.+..+..|++||+ .+|.+..++..+-.++.++-+-++..+-.++++..+|.+...|...
T Consensus 44 ~a~~E~klsilerAL~------------------~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 44 RALAERKLSILERALK------------------HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3445667788999998 5667777777777777888889999999999999999987665443
Q ss_pred H---HHHHhcCCHHHHHHHHHHHHHhC
Q 018098 305 G---QAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 305 a---~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
- +.....-.++.....|.++++.-
T Consensus 106 L~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 106 LDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 2 22233346777777787777653
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.76 E-value=19 Score=34.36 Aligned_cols=65 Identities=25% Similarity=0.122 Sum_probs=45.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--LGDLKGALLDTEF 289 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~Al~~~~~ 289 (361)
+......+..+|+.++|..|...+...++-+. -... ...+..++.+|.. .-++++|.+.++.
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~---------------~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLP---------------GREE-YQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------------chhh-HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45566777889999999999999999886110 0011 3566777766654 5678888888886
Q ss_pred Hhh
Q 018098 290 AMR 292 (361)
Q Consensus 290 al~ 292 (361)
.+.
T Consensus 195 ~~~ 197 (379)
T PF09670_consen 195 LLK 197 (379)
T ss_pred HHH
Confidence 664
No 411
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.39 E-value=0.88 Score=42.15 Aligned_cols=80 Identities=14% Similarity=0.018 Sum_probs=61.2
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~ 296 (361)
+.+...++.+.|..|+..-..+++ .++....+++.+++.++.+.++++|+++...+....|+
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~------------------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALR------------------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred chHHhcccccCCCcceeccccccc------------------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 345555666677777666666665 66677889999999999999999999999999999999
Q ss_pred chhhHhHHHHHHHhcCCH
Q 018098 297 NVKALFRQGQAYMALNDV 314 (361)
Q Consensus 297 ~~ka~~~~a~a~~~l~~~ 314 (361)
+....-.+...-....++
T Consensus 342 d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 342 DKAIEEELENVRQKKKQY 359 (372)
T ss_pred hHHHHHHHHHhhhHHHHH
Confidence 877666665555444444
No 412
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.24 E-value=6.8 Score=33.64 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhhcCC-CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHH
Q 018098 280 LKGALLDTEFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----DGGIKKELAVAKKKIHERRE 350 (361)
Q Consensus 280 ~~~Al~~~~~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~----~~~~~~~l~~~~~~~~~~~~ 350 (361)
-++|+..+-++-.... +.+...+.+|.-|. ..+.++|+..|.+++++.+. |+++...|+.+....++.+.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3455555544432221 34666666665444 67778888888888887654 47778888877777766644
No 413
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.19 E-value=5 Score=39.07 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=54.4
Q ss_pred HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCCchhh--
Q 018098 224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTEFAMRDGDDNVKA-- 300 (361)
Q Consensus 224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Al~~~~~al~~~p~~~ka-- 300 (361)
+.+.|.+-...|.+++. .+|+++.+|..-|.-.+..+. .+.|...+.++|+.+|++++.
T Consensus 117 k~~~~~~v~ki~~~~l~------------------~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLA------------------KHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HhcchhHHHHHHHHHHH------------------hCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 44448888889999998 899999999988888888776 999999999999999999654
Q ss_pred -HhHHHHHH
Q 018098 301 -LFRQGQAY 308 (361)
Q Consensus 301 -~~~~a~a~ 308 (361)
|+++-..+
T Consensus 179 eyfrmEL~~ 187 (568)
T KOG2396|consen 179 EYFRMELMY 187 (568)
T ss_pred HHHHHHHHH
Confidence 44444333
No 414
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.30 E-value=10 Score=36.83 Aligned_cols=85 Identities=18% Similarity=0.058 Sum_probs=41.4
Q ss_pred HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHh
Q 018098 223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~ 302 (361)
...|+.-.|-.....+++ ..|..+.....++.++..+|.|+.|..+..-+-..-....++..
T Consensus 300 ~~~gd~~aas~~~~~~lr------------------~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~ 361 (831)
T PRK15180 300 LADGDIIAASQQLFAALR------------------NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR 361 (831)
T ss_pred hhccCHHHHHHHHHHHHH------------------hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH
Confidence 344555555555555555 33333334444556666666666665555443333233334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 018098 303 RQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 303 ~~a~a~~~l~~~~~A~~~~~~al 325 (361)
-+-..+..++++++|...-+..+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHh
Confidence 44444455555555544443333
No 415
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.57 E-value=29 Score=34.32 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC----chhhHhHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRD---GDD----NVKALFRQGQAYMALND-VDAAVESFEKALKLEPNDGGIKKE 337 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~---~p~----~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~P~~~~~~~~ 337 (361)
-+.-+|.|...+|+-..|...+..+++. ... .+-|+|-+|..+..++. ..+|.+++.+|-+...++.--...
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRL 530 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRL 530 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHH
Confidence 3566799999999999999999888832 111 27899999999999999 999999999998887554333333
Q ss_pred HHHHHHHH
Q 018098 338 LAVAKKKI 345 (361)
Q Consensus 338 l~~~~~~~ 345 (361)
--+++..+
T Consensus 531 h~rIqAAl 538 (546)
T KOG3783|consen 531 HMRIQAAL 538 (546)
T ss_pred HHHHHHHH
Confidence 33333333
No 416
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.80 E-value=7.3 Score=35.37 Aligned_cols=64 Identities=6% Similarity=0.065 Sum_probs=57.2
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
...+..++..+...++++.+++..++.+. .+|.+-.+|..+-..|++.|+...|+..|.+.-
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~------------------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE------------------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55677788888899999999999999998 889999999999999999999999999998877
Q ss_pred hc
Q 018098 292 RD 293 (361)
Q Consensus 292 ~~ 293 (361)
.+
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 64
No 417
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=74.72 E-value=75 Score=30.05 Aligned_cols=121 Identities=9% Similarity=0.004 Sum_probs=70.8
Q ss_pred HHHhhhHHHHHhcchhHHh---------hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 018098 207 WWMNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
-..+.+..+++.|-.+.+. ...++|..+|++|.-+..++...-.........+++....++..++.+..+.
T Consensus 101 l~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE 180 (355)
T cd09241 101 LKFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQE 180 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455677777777776543 3488899999999888776644321110111225566666666665544332
Q ss_pred CChH-----------------HHHHHHHHHhhc-------CCCc------------hhhHhHHHHHHHhcCCHHHHHHHH
Q 018098 278 GDLK-----------------GALLDTEFAMRD-------GDDN------------VKALFRQGQAYMALNDVDAAVESF 321 (361)
Q Consensus 278 ~~~~-----------------~Al~~~~~al~~-------~p~~------------~ka~~~~a~a~~~l~~~~~A~~~~ 321 (361)
=-|. ++..+|+.|+.. .+.+ +-++|+.|......+++-+++..+
T Consensus 181 ~~~~Kai~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L 260 (355)
T cd09241 181 CFWQKAISDGTKDSLIAKLAAQVSDYYQEALKYANKSDLIRSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARL 260 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2222 233445454432 1111 346677777777777888888888
Q ss_pred HHHHHh
Q 018098 322 EKALKL 327 (361)
Q Consensus 322 ~~al~l 327 (361)
+.|+..
T Consensus 261 ~~A~~~ 266 (355)
T cd09241 261 RVALAA 266 (355)
T ss_pred HHHHHH
Confidence 877763
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.62 E-value=11 Score=32.08 Aligned_cols=50 Identities=22% Similarity=0.200 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
.+..++..++.++..| ++..+.+++.++..+|+.++|.....++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4556777888888888 7889999999999999999999999999999993
No 419
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.46 E-value=4.1 Score=34.95 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=45.0
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al 284 (361)
.++-...+|..|. +.+-++|+..|.+++++... .+..++.++..||.+|.++++++.|=
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--------------~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNP--------------DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4556666675554 78999999999999995431 12445678899999999999999873
No 420
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=74.36 E-value=44 Score=31.87 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHH
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--LGDLKGALLDTE 288 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~Al~~~~ 288 (361)
.....+..+|++++|..|...|.++++-. .++ ........+.+++.+|.. .-++++|.+.++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~--------l~~-----~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRL--------LSA-----VNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcc--------cCh-----hhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34446668999999999999999998711 011 133456677788887765 567888888887
No 421
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.87 E-value=90 Score=30.27 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=69.1
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh---HHH---H
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL---KGA---L 284 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~---~~A---l 284 (361)
.+..+.+.|..+++...|++|+.+.-.|=++.-.+.+. ....-.+.+.+...+-.||+.+++. ..| +
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k-------lLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK-------LLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH-------HHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 46778889999999999999999888776654332111 0012223334445556788887763 222 3
Q ss_pred HHHHHHhhc-------------CCCch------hhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 285 LDTEFAMRD-------------GDDNV------KALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 285 ~~~~~al~~-------------~p~~~------ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
.-|++.+.. .+..+ ..+...|...+.+|+-++|.++++.+...
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 344444421 12221 23344588999999999999999988653
No 422
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.87 E-value=51 Score=28.95 Aligned_cols=92 Identities=18% Similarity=0.120 Sum_probs=65.8
Q ss_pred hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh-
Q 018098 221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK- 299 (361)
Q Consensus 221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k- 299 (361)
.+.+.++.++|+..-..-++ .+|.+..+...+-..+.-.|+|++|+..|+-+-.+.|+..+
T Consensus 10 eLL~~~sL~dai~~a~~qVk------------------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVK------------------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHhccHHHHHHHHHHHHh------------------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 46677889999998888887 67777777777778888899999999999999999998743
Q ss_pred -hHhHHHHHHHh--------------cC-CHHHHHHHHHHHHHhCCC
Q 018098 300 -ALFRQGQAYMA--------------LN-DVDAAVESFEKALKLEPN 330 (361)
Q Consensus 300 -a~~~~a~a~~~--------------l~-~~~~A~~~~~~al~l~P~ 330 (361)
-+|+-..-.++ +| ...+=+..+..++.++.+
T Consensus 72 a~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 72 ASLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 12222111111 22 555666666677777654
No 423
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=71.38 E-value=19 Score=25.48 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhCCC
Q 018098 317 AVESFEKALKLEPN 330 (361)
Q Consensus 317 A~~~~~~al~l~P~ 330 (361)
|++.|.++++..|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 33344444444554
No 424
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.33 E-value=33 Score=33.55 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
+-+.+..+.|-.+..|+-++-..+.-.+.+.+|.+|++++++.-+.+.....+...+..|-..++
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (831)
T PRK15180 760 EHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITALQ 824 (831)
T ss_pred hhHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHh
Confidence 45678888899999999999888888999999999999999999888555556666666655443
No 425
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.26 E-value=63 Score=27.34 Aligned_cols=113 Identities=11% Similarity=-0.069 Sum_probs=70.5
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM- 291 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al- 291 (361)
.+....|.....+|+-..|+..|.++-... ..+ ....-.+...-|..+...|-|+....-.+..-
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt--------~~P------~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~ 160 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADT--------SIP------QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG 160 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccC--------CCc------chhhHHHHHHHHHHHhccccHHHHHHHhhhccC
Confidence 345566777788889999999998876511 111 11112234444556666788887655443322
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
.-+|-..-+.--+|.+-++.|++..|...|..... +.+-+....+.+.
T Consensus 161 d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 161 DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 33444556666788899999999999999988766 4344433333333
No 426
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.23 E-value=51 Score=30.13 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=36.8
Q ss_pred HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChH
Q 018098 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281 (361)
Q Consensus 216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~ 281 (361)
.++++.+.+.+++++|+..|.+.+.- . -+.+.. ..........+++..|...|++.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k--g-------~s~dek-~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK--G-------VSKDEK-TLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC--C-------CChhhh-hhhHHHHHHHHHHHHHHhcCCcc
Confidence 56788889999999999999998861 0 000111 12223345677888887777753
No 427
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=70.78 E-value=51 Score=30.83 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=71.9
Q ss_pred HHHHhhhHHHHHhcchhHH----------hhhHHHHHHHHHHHHhhhccccccCCCCcc--chhHHHHHHHHHHHHHHHH
Q 018098 206 SWWMNAVDSIKVFGNEHYK----------KQDYKMALRKYRKALRYLDICWEKEGIDEG--KSSSLRKTKSQIFTNSSAC 273 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~----------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~nla~~ 273 (361)
.-..+.+..++++|-.+.. ....+.|..++++|.-+..++...-..... ...++.+....++..++..
T Consensus 105 ~l~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LA 184 (345)
T cd09034 105 SLRYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLA 184 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 4455667777777766653 245788889999988887766443211111 1123566666666666554
Q ss_pred HHhcCChH------------------HHHHHHHHHhhc----CC--------C------------chhhHhHHHHHHHhc
Q 018098 274 KLKLGDLK------------------GALLDTEFAMRD----GD--------D------------NVKALFRQGQAYMAL 311 (361)
Q Consensus 274 ~~~l~~~~------------------~Al~~~~~al~~----~p--------~------------~~ka~~~~a~a~~~l 311 (361)
+.+.--|. ++...|+.|+.. +. . .+-++|+.|..+...
T Consensus 185 qAQe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~ 264 (345)
T cd09034 185 QAQECFLLKAEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEA 264 (345)
T ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43322122 333444444431 11 1 144677777777778
Q ss_pred CCHHHHHHHHHHHHHh
Q 018098 312 NDVDAAVESFEKALKL 327 (361)
Q Consensus 312 ~~~~~A~~~~~~al~l 327 (361)
+++-+|+..++.|...
T Consensus 265 ~~~G~aia~L~~A~~~ 280 (345)
T cd09034 265 NKIGEAIARLQAALEL 280 (345)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888999888888764
No 428
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=70.47 E-value=94 Score=29.13 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=82.0
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHH
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG--ALLDTEF 289 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~--Al~~~~~ 289 (361)
+..-...|-.+...++|+.|..+|=+|.+=.... ..+......+-.+-.|-..++..++ ++-....
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~------------~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~ 276 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL------------DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL 276 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHcccccc------------CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence 4445667888888899999999999998722111 0112333344444555566666655 5667788
Q ss_pred HhhcCCCchhhHhHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098 290 AMRDGDDNVKALFRQGQAYMA--LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345 (361)
Q Consensus 290 al~~~p~~~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 345 (361)
+++.+.....|+-..|.++.. +.+|+.|++.|+.-+.-| +-++..+..+...+
T Consensus 277 ~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 277 ALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNL 331 (411)
T ss_pred HHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHH
Confidence 888888889999999988764 679999999998876654 55666666665544
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.00 E-value=12 Score=33.21 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHh
Q 018098 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAM 291 (361)
Q Consensus 227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Al~~~~~al 291 (361)
--+.|...|++|+.++.... ...+|....+..|.+..|.. +++.++|+..+++|+
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L----------~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKEL----------PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHS----------CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhccc----------CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34778899999998776421 12577788888888887755 689999998888876
No 430
>PF15469 Sec5: Exocyst complex component Sec5
Probab=69.82 E-value=8.2 Score=32.58 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.4
Q ss_pred HHhhhHHHHHHHHHHHHhhh
Q 018098 223 YKKQDYKMALRKYRKALRYL 242 (361)
Q Consensus 223 ~~~g~y~~A~~~y~~al~~~ 242 (361)
.+.|+|+.|+..|.+|..+.
T Consensus 97 i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHH
Confidence 46899999999999998854
No 431
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=69.16 E-value=34 Score=36.75 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh-------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k-------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~ 332 (361)
=|...|.+|..+++|++-++.+.-|++..|..+. ..||+-.+.+. .-..|....--++.+.|...
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccc
Confidence 4888999999999999999999999999998754 44555554443 33457788888899999754
No 432
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=69.14 E-value=21 Score=34.46 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=76.7
Q ss_pred HHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc------------CCCCccchhHHH----HHHHHHHHHHHHHHHh
Q 018098 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK------------EGIDEGKSSSLR----KTKSQIFTNSSACKLK 276 (361)
Q Consensus 213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~------------~~~~~~~~~~~~----~~~~~~~~nla~~~~~ 276 (361)
...+..|...+..++|.+|+..+++||++....... ..++++...... --...-+..+
T Consensus 32 ~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~------ 105 (471)
T KOG4459|consen 32 ELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER------ 105 (471)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHH------
Confidence 345678888899999999999999999855422110 001111000000 0111112222
Q ss_pred cCChHHHHHHHHHHhhcCCCc----------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 277 LGDLKGALLDTEFAMRDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 277 l~~~~~Al~~~~~al~~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
..++.-|...+.-.|.. -..|-++-.+|+..|++..|++.-...+-.+|++..+...+.-=+..
T Consensus 106 ----a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~ 179 (471)
T KOG4459|consen 106 ----AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTM 179 (471)
T ss_pred ----HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhc
Confidence 33444555555443332 26777888999999999999999998899999999998887765533
No 433
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.76 E-value=38 Score=36.34 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=73.4
Q ss_pred HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294 (361)
Q Consensus 215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~ 294 (361)
....|...|..+.|+.|.-.|... .-|..||.....+|+|+.|.....+|=...
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~v--------------------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV--------------------------SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 455677778888887777766643 246778888899999999999888875332
Q ss_pred CCc-------hhhHhHHH------------------HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098 295 DDN-------VKALFRQG------------------QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346 (361)
Q Consensus 295 p~~-------~ka~~~~a------------------~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 346 (361)
... .+--||+| .-|...|.+++-+..++.++-|.-.+-.....|+.+..+-+
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 110 11123333 33567888999999999988887766677777777766554
No 434
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.44 E-value=42 Score=26.98 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=38.3
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 267 FTNSSACKLKL-GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 267 ~~nla~~~~~l-~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
|.++|.-++-. ++-++--..+....+-+..+++.++.+|.||..+|+..+|.+.+.+|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44555544433 44444344445555556668999999999999999999999999998764
No 435
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=68.39 E-value=39 Score=34.89 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=51.9
Q ss_pred HhcchhHHhhhHHHHHHHHH------HHHhhhccccccCCCCccc-h----hHHHHHHHH--------HHHHHHHHHHhc
Q 018098 217 VFGNEHYKKQDYKMALRKYR------KALRYLDICWEKEGIDEGK-S----SSLRKTKSQ--------IFTNSSACKLKL 277 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~------~al~~~~~~~~~~~~~~~~-~----~~~~~~~~~--------~~~nla~~~~~l 277 (361)
..|..+-+..++++|+++|+ +|++++..+.|.+-..-++ + ......++. ++..--.+.+..
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 34555667788999999865 5666666655543211111 1 001111111 111111122233
Q ss_pred CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324 (361)
Q Consensus 278 ~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 324 (361)
++|.+|+...+..-... ...+.|-..|.-|..+|+|+-|.+.|.++
T Consensus 746 kew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhc
Confidence 44555544443322211 22344445677777788887777766543
No 436
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.00 E-value=26 Score=35.18 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=20.2
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
...|+.+|..+.+++++..|.+++.+|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 45567777777777777777777777655
No 437
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.66 E-value=84 Score=29.37 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=31.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHH
Q 018098 302 FRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKIHER 348 (361)
Q Consensus 302 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~ 348 (361)
-|+|.+...+|+..+|++.+....+-.|-. -.++.++-++...++.+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888999999999888877766632 23455555554444444
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.89 E-value=46 Score=26.25 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM--RDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al--~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 325 (361)
-++....+|...|... ..+.+.|.... .+.-..+..|-..|..+...|++++|.+.|++++
T Consensus 64 nD~RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 64 NDERYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3455555665555432 27777777766 4666778888888999999999999999998875
No 439
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=66.74 E-value=72 Score=30.16 Aligned_cols=121 Identities=13% Similarity=0.026 Sum_probs=70.9
Q ss_pred HHHHhhhHHHHHhcchhHHh------------hhHHHHHHHHHHHHhhhccccccCCC--C--ccchhHHHHHHHHHHHH
Q 018098 206 SWWMNAVDSIKVFGNEHYKK------------QDYKMALRKYRKALRYLDICWEKEGI--D--EGKSSSLRKTKSQIFTN 269 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~------------g~y~~A~~~y~~al~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~n 269 (361)
.-..+.+..++++|-.+.+. ...+.|..++++|.-+..++...-.+ . .+...++++....++.+
T Consensus 103 sl~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e~~l~~l~~~~~p~~DL~~~~L~aL~~ 182 (353)
T cd09243 103 DAIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKENYIPKLIEPAEKGSDLDPRVLEAYIN 182 (353)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCHHHHHHHHH
Confidence 44556677788888777431 23677888888888777665443111 0 11122466666666666
Q ss_pred HHHHHHhcCChHH-----------------HHHHHHHHhhc----CC----Cc------------hhhHhHHHHHHHhcC
Q 018098 270 SSACKLKLGDLKG-----------------ALLDTEFAMRD----GD----DN------------VKALFRQGQAYMALN 312 (361)
Q Consensus 270 la~~~~~l~~~~~-----------------Al~~~~~al~~----~p----~~------------~ka~~~~a~a~~~l~ 312 (361)
++.+..+.=-+.+ +.++|++|... .+ .+ +-++|+.|..+...+
T Consensus 183 lmLAQAQE~~~~KAi~~k~k~sliaKLA~q~a~~Y~~A~~~l~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~ 262 (353)
T cd09243 183 QCTAEAQEVTVARAIELKHNAGLISALAYETAKLFQKADDSLSSLDPEYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKD 262 (353)
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 6554433222222 33445555432 11 11 347777787777788
Q ss_pred CHHHHHHHHHHHHH
Q 018098 313 DVDAAVESFEKALK 326 (361)
Q Consensus 313 ~~~~A~~~~~~al~ 326 (361)
++-+|+..++.|.+
T Consensus 263 k~GeaIa~L~~A~~ 276 (353)
T cd09243 263 KCGEAIRSLQESEK 276 (353)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888887765
No 440
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.15 E-value=52 Score=23.45 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhCCCC
Q 018098 317 AVESFEKALKLEPND 331 (361)
Q Consensus 317 A~~~~~~al~l~P~~ 331 (361)
|++.|..+++..|+.
T Consensus 32 aie~l~~~lk~e~d~ 46 (77)
T cd02683 32 GIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHhhCCCH
Confidence 334444445556643
No 441
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=62.98 E-value=31 Score=27.17 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCC---------------chhhHhHHHHHHHhcCCHHHHHHHHHHHHH----h
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDD---------------NVKALFRQGQAYMALNDVDAAVESFEKALK----L 327 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~---------------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~----l 327 (361)
+.++|...++.+++-.++-.|++|+.+..+ ++-...++|.-+..+|+-+=.+++++-|-+ |
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888888999999999999999854321 145678899999999999999999977654 5
Q ss_pred CCCC-----HHHHHHHHHHHHHH
Q 018098 328 EPND-----GGIKKELAVAKKKI 345 (361)
Q Consensus 328 ~P~~-----~~~~~~l~~~~~~~ 345 (361)
-|+- ......++-++..+
T Consensus 84 iPQCp~~~C~afi~sLGCCk~AL 106 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKAL 106 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHH
Confidence 5652 34455565555544
No 442
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.80 E-value=43 Score=33.16 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=67.7
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
|.-+...+..+.-.|+-+.|+..++.++. . ........++..+|.++.-+.+|..|-.++....
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~-~---------------~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIP-I---------------RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhccc-H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455556666677777778888888776 1 2677788899999999999999999999999999
Q ss_pred hcCCCchhhHhHH--HHHHH--------hcCCHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQ--GQAYM--------ALNDVDAAVESFEKA 324 (361)
Q Consensus 292 ~~~p~~~ka~~~~--a~a~~--------~l~~~~~A~~~~~~a 324 (361)
... ++++|+|.- |.+++ ..++-+.|...++..
T Consensus 331 des-dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~ 372 (546)
T KOG3783|consen 331 DES-DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVG 372 (546)
T ss_pred hhh-hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHH
Confidence 888 466666653 33332 234555555555444
No 443
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=62.09 E-value=36 Score=24.43 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=37.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 307 AYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356 (361)
Q Consensus 307 a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~ 356 (361)
.+..+..++=|+.++.-.|.-+|+|..+.....+...+.++..++-.+.|
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~~~Ye~~y 53 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLKKEYEKRY 53 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666778888888999999999999998888777776655544444
No 444
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=62.05 E-value=47 Score=33.05 Aligned_cols=86 Identities=8% Similarity=-0.099 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098 254 GKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333 (361)
Q Consensus 254 ~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~ 333 (361)
++....+|.+..+|+-|-.-+... -++++...|++.+..-|..+.+|---...-++.++|+.-...|.+||.-.- +-+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 444557888889998876655444 899999999999999999999998888888999999998888888876442 355
Q ss_pred HHHHHHHH
Q 018098 334 IKKELAVA 341 (361)
Q Consensus 334 ~~~~l~~~ 341 (361)
.|+..-.-
T Consensus 88 LW~lYl~Y 95 (656)
T KOG1914|consen 88 LWKLYLSY 95 (656)
T ss_pred HHHHHHHH
Confidence 66554443
No 445
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=61.93 E-value=52 Score=31.19 Aligned_cols=119 Identities=13% Similarity=-0.023 Sum_probs=69.3
Q ss_pred HHHhhhHHHHHhcchhHHh---------hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 018098 207 WWMNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l 277 (361)
-..+.+..+++.|-.+.+. ..++.|..+|++|.-++.++........ ...+++....++.+++.+..+.
T Consensus 102 ~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~--s~Dl~~~~l~~l~~l~lAqAQe 179 (377)
T PF03097_consen 102 LAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSP--SPDLSPEVLSALSNLMLAQAQE 179 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-S--SGGGSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccC--CCcCCHHHHHHHHHHHHHHHHH
Confidence 4455677777777766543 4578899999999988887655521111 1136666666666665443322
Q ss_pred CCh-----------------HHHHHHHHHHhhc----------CCCc------------hhhHhHHHHHHHhcCCHHHHH
Q 018098 278 GDL-----------------KGALLDTEFAMRD----------GDDN------------VKALFRQGQAYMALNDVDAAV 318 (361)
Q Consensus 278 ~~~-----------------~~Al~~~~~al~~----------~p~~------------~ka~~~~a~a~~~l~~~~~A~ 318 (361)
--| .++...|+.|... .+.+ +.++|..|......+++-+|+
T Consensus 180 ~~~~ka~~~~~~~~liAKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~ai 259 (377)
T PF03097_consen 180 CFYEKAIADKKKPSLIAKLAAQASELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAI 259 (377)
T ss_dssp HHHHHHHHTTG-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 111 2233344444421 1111 347777777777878887777
Q ss_pred HHHHHHHHh
Q 018098 319 ESFEKALKL 327 (361)
Q Consensus 319 ~~~~~al~l 327 (361)
..++.|...
T Consensus 260 a~L~~A~~~ 268 (377)
T PF03097_consen 260 ARLRRAEEA 268 (377)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776553
No 446
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=61.40 E-value=1.9e+02 Score=29.21 Aligned_cols=105 Identities=9% Similarity=-0.014 Sum_probs=65.0
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
-..|......-.+.|+++...-.|++++-- -......|.+.+.-....|+..-|-....++.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~------------------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP------------------CALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH------------------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 344555566667789999999999998862 23344556666666666666666666666666
Q ss_pred hcC-CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098 292 RDG-DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334 (361)
Q Consensus 292 ~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 334 (361)
++. |..+-.+..-|..-...|++..|...|++...--|+...+
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 543 3344444444555555667777777777766555654433
No 447
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.20 E-value=24 Score=31.84 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=37.4
Q ss_pred hcCChHHHHHHHHHHhhcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098 276 KLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 276 ~l~~~~~Al~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al 325 (361)
+..+.++|+..+++++++.+.. .||+-.+-.+++.+++|++-...|++.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4568999999999999998865 5677777777777777776666555544
No 448
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=60.55 E-value=32 Score=31.66 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245 (361)
Q Consensus 209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~ 245 (361)
++.|..+...+...-+.++|.+|+.+|+.|++|+.++
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~ 43 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHA 43 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHH
Confidence 3456667777777778899999999999999987654
No 449
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.07 E-value=1.3e+02 Score=32.58 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=68.6
Q ss_pred hcchhHHhhhHHHHHHHHHH------HHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 218 FGNEHYKKQDYKMALRKYRK------ALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 218 ~G~~~~~~g~y~~A~~~y~~------al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
.|++....+-|++|.+.|++ |+..+-... ...+.+..-...-+...+|..+|.+.+..+...+|++.|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i--~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENI--GSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHh--hhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 46777777888888887754 333221100 000000000011233467899999999999999999988765
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 328 (361)
+++..|...-.+....|.|++=+.++..|-+..
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 566777777788889999999999998886653
No 450
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.37 E-value=17 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=16.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 301 LFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 301 ~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
+.++|.-.-..|+|++|+.+|..++++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455555667777777777666654
No 451
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.57 E-value=53 Score=29.75 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=61.4
Q ss_pred hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
-.+++++-.+.|+.++|++-.+.|++.|.|+..+....-.+...+..++-.. .--|++.. +.-|+-.+.....|
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS--tS~~m~LL---Q~FYeTTL~ALkdA- 138 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS--TSKNMDLL---QEFYETTLDALKDA- 138 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh--hhhhhHHH---HHHHHHHHHHHHhh-
Confidence 3457777888999999999999999999988765333221111111111111 11111111 11122223222222
Q ss_pred hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
+-+.-+.|....+|..|+..++|..-...+++...
T Consensus 139 KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 139 KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 12223456666789999999998877766665544
No 452
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.34 E-value=51 Score=30.77 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG--DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~ 341 (361)
.+-.|+|.+..+..-.+.++...+....-. ..+-..+--+|-.+..+|+.++|...|++++.+.++..+-...+..+
T Consensus 330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345788888777776777777666555431 13455666789999999999999999999999998776655554444
No 453
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=57.84 E-value=23 Score=20.04 Aligned_cols=26 Identities=19% Similarity=-0.006 Sum_probs=15.8
Q ss_pred HHHHHHHHhhcCCCchhhHhHHHHHH
Q 018098 283 ALLDTEFAMRDGDDNVKALFRQGQAY 308 (361)
Q Consensus 283 Al~~~~~al~~~p~~~ka~~~~a~a~ 308 (361)
.+..+.++|..+|.|..+|..|-.+.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHH
Confidence 35566666677776666666554443
No 454
>PF12854 PPR_1: PPR repeat
Probab=57.09 E-value=23 Score=20.60 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 018098 265 QIFTNSSACKLKLGDLKGALLDTEF 289 (361)
Q Consensus 265 ~~~~nla~~~~~l~~~~~Al~~~~~ 289 (361)
..|+-+-..|.+.|+.++|++.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4566777777888888888777654
No 455
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=56.75 E-value=23 Score=20.76 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=16.3
Q ss_pred hhHhHHH--HHHHhcC-----CHHHHHHHHHHHHHh
Q 018098 299 KALFRQG--QAYMALN-----DVDAAVESFEKALKL 327 (361)
Q Consensus 299 ka~~~~a--~a~~~l~-----~~~~A~~~~~~al~l 327 (361)
.+.+++| .++..-. ++++|+.+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 4333221 466777777776654
No 456
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.53 E-value=57 Score=34.33 Aligned_cols=88 Identities=17% Similarity=0.064 Sum_probs=67.6
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD 293 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~ 293 (361)
..--.|......+++++|++.-+.++..+... ..-....++.+.+.+..-.|++.+|+.+-..+.++
T Consensus 460 ~~aL~a~val~~~~~e~a~~lar~al~~L~~~-------------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 460 FQALRAQVALNRGDPEEAEDLARLALVQLPEA-------------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-------------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 33345667778999999999999999866543 34456778999999999999999999999988877
Q ss_pred CCC------chhhHhHHHHHHHhcCCH
Q 018098 294 GDD------NVKALFRQGQAYMALNDV 314 (361)
Q Consensus 294 ~p~------~~ka~~~~a~a~~~l~~~ 314 (361)
... ...+.+..+.++..+|+.
T Consensus 527 a~~~~~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 527 ARQHDVYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHhhHH
Confidence 322 245666678888899943
No 457
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=56.31 E-value=36 Score=23.87 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=7.7
Q ss_pred hcCCHHHHHHHHHHHHH
Q 018098 310 ALNDVDAAVESFEKALK 326 (361)
Q Consensus 310 ~l~~~~~A~~~~~~al~ 326 (361)
..|++++|+..|..+++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 33555544444444433
No 458
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.28 E-value=63 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=13.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 302 FRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 302 ~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
...|.-.-..|++++|+.+|.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444455666666665555544
No 459
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.73 E-value=21 Score=19.50 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
|+.+-.+|.+.|++++|...+++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455556666666666666665544
No 460
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=55.26 E-value=1.9e+02 Score=27.33 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=67.8
Q ss_pred HHHhhhHHHHHhcchhHHh---------hhHHHHHHHHHHHHhhhccccccC--CCCccchhHHHHHHHHHHHHHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKL 275 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~ 275 (361)
-..+.+..+++.|-.+.+. ...++|..+|++|.-+..++.+.- .........+++....++..+..+..
T Consensus 106 l~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQA 185 (353)
T cd09246 106 VHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLRDKVSGKTGGFRTPDLTAECLGMLESLMLAQA 185 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445677777777666432 248889999999887776653321 00001112355555556655554433
Q ss_pred hcCChH-----------------HHHHHHHHHhhc----------CCCc------------hhhHhHHHHHHHhcCCHHH
Q 018098 276 KLGDLK-----------------GALLDTEFAMRD----------GDDN------------VKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 276 ~l~~~~-----------------~Al~~~~~al~~----------~p~~------------~ka~~~~a~a~~~l~~~~~ 316 (361)
+.==|. ++..+|+.|... ++.+ +.++|+.|......+++-+
T Consensus 186 QE~~~~Ka~~~~~k~sliAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~Ge 265 (353)
T cd09246 186 QECFYEKAVADGKSPAVCSKLAKQARSYYEEALEALDSPPLKGHFDKSWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGE 265 (353)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHH
Confidence 322222 222344444421 1111 3467777888888889999
Q ss_pred HHHHHHHHHH
Q 018098 317 AVESFEKALK 326 (361)
Q Consensus 317 A~~~~~~al~ 326 (361)
|+..++.|.+
T Consensus 266 aIa~L~~A~~ 275 (353)
T cd09246 266 EIARLRAASD 275 (353)
T ss_pred HHHHHHHHHH
Confidence 9988888765
No 461
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=54.94 E-value=32 Score=19.60 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=14.5
Q ss_pred hHhHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 018098 300 ALFRQGQAYMAL----NDVDAAVESFEKALKL 327 (361)
Q Consensus 300 a~~~~a~a~~~l----~~~~~A~~~~~~al~l 327 (361)
+.+++|..|..- .+.++|+.+|+++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 445555554421 2556666666665543
No 462
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=54.73 E-value=1.5e+02 Score=28.79 Aligned_cols=30 Identities=20% Similarity=-0.053 Sum_probs=25.7
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
+.++|+.|......+++-+|+..++.|...
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~ 325 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKKE 325 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHHH
Confidence 567788888888899999999999999874
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.98 E-value=80 Score=22.70 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHHhC------CC----CHHHHHHHHHHHHHHHHHHHHHHH
Q 018098 310 ALNDVDAAVESFEKALKLE------PN----DGGIKKELAVAKKKIHERREQEKK 354 (361)
Q Consensus 310 ~l~~~~~A~~~~~~al~l~------P~----~~~~~~~l~~~~~~~~~~~~~~k~ 354 (361)
..|+.++|+..|+++++.- |. -...|.....++.+++.....-+.
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~ 74 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKT 74 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555554431 11 234455555555555555444333
No 464
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.28 E-value=37 Score=31.94 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=49.1
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL 284 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al 284 (361)
...+.+..+...|+.++..++|++|...|..|..++...+ -.-.-....+++..|..+++++++..++
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~----------Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY----------GEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455788899999999999999999999999998664321 1123344556666777777777666544
No 465
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.93 E-value=1e+02 Score=31.87 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh----------------------hcCCCchhhHhHHHHHHHhcCCHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM----------------------RDGDDNVKALFRQGQAYMALNDVDA 316 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al----------------------~~~p~~~ka~~~~a~a~~~l~~~~~ 316 (361)
.+.....++.++|..+..+..|++|.++|.+.- +.=|++.+.+-.+|.++...|--++
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 345667889999999999999999999887643 2235566666667777777777777
Q ss_pred HHHHHHH
Q 018098 317 AVESFEK 323 (361)
Q Consensus 317 A~~~~~~ 323 (361)
|.+.|-+
T Consensus 871 AV~a~Lr 877 (1189)
T KOG2041|consen 871 AVEAYLR 877 (1189)
T ss_pred HHHHHHh
Confidence 7766644
No 466
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.77 E-value=33 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=29.3
Q ss_pred HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHh
Q 018098 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~ 240 (361)
.+.+.+......|...+-.|+|..|.+...++-+
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445678888899999999999999999999976
No 467
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.19 E-value=1.1e+02 Score=28.16 Aligned_cols=103 Identities=12% Similarity=0.007 Sum_probs=68.5
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
.+++++++|..|.+.++-+.+.+...+.++-.... .+.-.-.-+-..+|.+|..+.-.++.++..+-.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st------------g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST------------GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc------------ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 47788899999999999999998887777622100 011122234456777777776677888888888
Q ss_pred hhcCCCc-----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 291 MRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 291 l~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
++..-++ .|+| .|.-.+...++.+|...+..++.-
T Consensus 182 iEkGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 182 IEKGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHhCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhcc
Confidence 8776654 2333 355566677888888777666543
No 468
>PRK11619 lytic murein transglycosylase; Provisional
Probab=51.68 E-value=63 Score=33.31 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=43.3
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
..+..++++.+...+...-.-........|.+|.++..+|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444788888877777775444445688999999999999999999999999754
No 469
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=51.19 E-value=85 Score=26.78 Aligned_cols=17 Identities=24% Similarity=-0.023 Sum_probs=9.0
Q ss_pred CChHHHHHHHHHHhhcC
Q 018098 278 GDLKGALLDTEFAMRDG 294 (361)
Q Consensus 278 ~~~~~Al~~~~~al~~~ 294 (361)
++.+.|+++.-+|.+++
T Consensus 182 kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 182 KDMDKALQFAIKACELD 198 (248)
T ss_pred HhHHHHHHHHHHHHhcC
Confidence 44455555555555554
No 470
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=50.95 E-value=1.8e+02 Score=28.44 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.4
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
++...|-++|.+.+..|+++-|..+|+++-..
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 36779999999999999999999999986443
No 471
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=49.56 E-value=90 Score=21.95 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 018098 304 QGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 304 ~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
.|.-.-..|+|++|+..|..+++
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444445555555555544443
No 472
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=49.49 E-value=21 Score=34.08 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCc-------hhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
..|-..+.-+|+++. ..+.+.++|.. ..+-|..|-||+.+++|.+|++.|.+++-
T Consensus 239 ~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666899544 56777777765 34458999999999999999998877654
No 473
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=49.38 E-value=51 Score=29.37 Aligned_cols=54 Identities=13% Similarity=-0.025 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHh
Q 018098 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFAM 291 (361)
Q Consensus 228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~Al~~~~~al 291 (361)
-+.|...|++|+.++... ....+|....+..|.+..|... ++.++|+....+|+
T Consensus 144 ~~~a~~aY~~A~e~a~~~----------L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAE----------LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHcc----------CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 568899999999875431 1125677778888888887775 88888887776665
No 474
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.62 E-value=70 Score=27.06 Aligned_cols=77 Identities=9% Similarity=-0.028 Sum_probs=55.9
Q ss_pred HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098 217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296 (361)
Q Consensus 217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~ 296 (361)
..+..+...|.|+.-....+..-. .-+|....+.--||....+.|++.+|...|..... |..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~-----------------d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~ 198 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAG-----------------DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQ 198 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccC-----------------CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-ccc
Confidence 345556667777765554433211 14667777888899999999999999999998887 667
Q ss_pred chhhHhHHHHHHHhc
Q 018098 297 NVKALFRQGQAYMAL 311 (361)
Q Consensus 297 ~~ka~~~~a~a~~~l 311 (361)
.+...-+++++.+.+
T Consensus 199 aprnirqRAq~mldl 213 (221)
T COG4649 199 APRNIRQRAQIMLDL 213 (221)
T ss_pred CcHHHHHHHHHHHHH
Confidence 788888888876653
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.33 E-value=1.1e+02 Score=25.95 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=36.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHH
Q 018098 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319 (361)
Q Consensus 270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~ 319 (361)
...++++.|.|++|.+.+++... +|++.+.-..++.+-...+.+..-++
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 34678899999999999999999 88887775555665555555544443
No 476
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.55 E-value=1.9e+02 Score=27.12 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=66.8
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a 290 (361)
..+++..+|..+.+.|+-+.|++.+.+..+-.-.+ ...-.-.-+...+|..|+...-..+-++.....
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~------------g~kiDVvf~~iRlglfy~D~~lV~~~iekak~l 170 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL------------GHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSL 170 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc------------ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 46678888899999999999998877766511100 011122334566777877777777888888888
Q ss_pred hhcCCCchh---hHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098 291 MRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALK 326 (361)
Q Consensus 291 l~~~p~~~k---a~~~~a~a~~~l~~~~~A~~~~~~al~ 326 (361)
++-.-++.. ..-..|.-.+...++.+|...|..++.
T Consensus 171 iE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 171 IEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 877665521 111234445566788888877766554
No 477
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=45.34 E-value=3.3e+02 Score=30.51 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=32.1
Q ss_pred HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhc
Q 018098 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~ 243 (361)
+....+..+.+|+.++..|+|.+|+..|.+|+..++
T Consensus 238 ~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k 273 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILK 273 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHh
Confidence 344678889999999999999999999999999886
No 478
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=45.19 E-value=1.3e+02 Score=22.74 Aligned_cols=51 Identities=22% Similarity=0.088 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCC
Q 018098 263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALND 313 (361)
Q Consensus 263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~ 313 (361)
........|...+-.|+|+.|.+...++-+..+...-.|.--|++-..+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 334445566666677777777777777766655555555555666555554
No 479
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.08 E-value=48 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
|+.+-.+|.+.|++++|++.+.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455666666666666665544
No 480
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=44.08 E-value=52 Score=25.37 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=39.1
Q ss_pred cCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccC
Q 018098 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE 249 (361)
Q Consensus 202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~ 249 (361)
...+......|..+...|..++..|+.+.|--.|.+.+.++..+...+
T Consensus 28 ~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~~Hp 75 (115)
T PF08969_consen 28 NIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIPKHP 75 (115)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHCCSC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcCc
Confidence 446777888999999999999999999999999999999985443333
No 481
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=43.71 E-value=1.2e+02 Score=21.83 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098 315 DAAVESFEKALKLEPNDGGIKKELAVAKKK 344 (361)
Q Consensus 315 ~~A~~~~~~al~l~P~~~~~~~~l~~~~~~ 344 (361)
-+++..-.++++.+|+||.++..+......
T Consensus 24 ~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~e 53 (80)
T PRK15326 24 QTQVTEALDKLAAKPSDPALLAAYQSKLSE 53 (80)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 333433344445566665554444444333
No 482
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=43.50 E-value=3e+02 Score=26.34 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=40.1
Q ss_pred HHHHhhhHHHHHhcchhHHhhh---------HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH
Q 018098 206 SWWMNAVDSIKVFGNEHYKKQD---------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 206 ~~~~~~a~~~~~~G~~~~~~g~---------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~ 274 (361)
.-..+.+..++++|-.+...|- ++.|..+|+.|.-.+.++...-. ......+++....++.++-.+.
T Consensus 100 sl~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~--~~Ps~Dms~~~L~~L~~LMLAQ 175 (384)
T cd09248 100 ALAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFS--NAPSPDMSTASLSMLEQLMVAQ 175 (384)
T ss_pred cHHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCcCCHHHHHHHHHHHHHH
Confidence 3455678888888888865543 78899999998776665543211 0111125555555555554433
No 483
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=42.88 E-value=1.8e+02 Score=29.19 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=60.8
Q ss_pred HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018098 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357 (361)
Q Consensus 288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 357 (361)
++-|+.+|.+..+|+.+-+-+... -+++....|++.+...|..+.+|....+...+-++.+..++-+.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 678899999999999998766665 999999999999999999999999999999988888887775543
No 484
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.88 E-value=96 Score=29.81 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKALKL------------EPNDGGIKKELAVAKKKIHERREQEKKQYRKM 359 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l------------~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~ 359 (361)
+-+...+|.+|-.++++++|+.+|++++.+ +..-...|+....+..++++.+..-+.+.+-+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl~vL 95 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRLNVL 95 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF13041 PPR_2: PPR repeat family
Probab=42.70 E-value=52 Score=20.68 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAMR 292 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al~ 292 (361)
.|+-+-..|.+.|++++|.+.+++-.+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455555566666666666666666654
No 486
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=41.96 E-value=1.2e+02 Score=29.65 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 325 (361)
.-+....+|+.........++-+.|+....++++..|. ..++++..|...++-++-..+|+++.
T Consensus 297 y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 297 YFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 55677788999999999999999999999999988886 67777877776665554444555443
No 487
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.81 E-value=1.9e+02 Score=30.58 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098 262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV 340 (361)
Q Consensus 262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~-~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 340 (361)
....+....|.-+.+.|++++|..+|-++|. ++|..+--.|--+ .+..+=..+++..++-.=.+......|-.
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLda------q~IknLt~YLe~L~~~gla~~dhttlLLn 439 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDA------QRIKNLTSYLEALHKKGLANSDHTTLLLN 439 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCH------HHHHHHHHHHHHHHHcccccchhHHHHHH
Confidence 3456677788888899999999999999995 4554432222111 12222223333333333334445555555
Q ss_pred HHHHHHHH
Q 018098 341 AKKKIHER 348 (361)
Q Consensus 341 ~~~~~~~~ 348 (361)
+.-++++.
T Consensus 440 cYiKlkd~ 447 (933)
T KOG2114|consen 440 CYIKLKDV 447 (933)
T ss_pred HHHHhcch
Confidence 55555444
No 488
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=41.47 E-value=2.9e+02 Score=26.08 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=38.6
Q ss_pred HHHhhhHHHHHhcchhHHhh---------hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHH
Q 018098 207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC 273 (361)
Q Consensus 207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~ 273 (361)
-..+.+..++++|-.+.+.+ ..+.|..+|++|.-...++.+.-. ......+.+....++.++..+
T Consensus 101 l~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l~e~~~--~~ps~Dls~~~L~~L~~LmLA 174 (350)
T cd09244 101 VAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLRENFS--NAPSMDLSPEMLEALIKLMLA 174 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCCCHHHHHHHHHHHHH
Confidence 34456888888887775433 378888999988877765543211 011122555555555555443
No 489
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=41.18 E-value=32 Score=34.28 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHh
Q 018098 227 DYKMALRKYRKALR 240 (361)
Q Consensus 227 ~y~~A~~~y~~al~ 240 (361)
+|..|+-.+-...+
T Consensus 275 ~YPmALg~LadLeE 288 (618)
T PF05053_consen 275 RYPMALGNLADLEE 288 (618)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHh
Confidence 56666655555444
No 490
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.19 E-value=2.8e+02 Score=24.90 Aligned_cols=97 Identities=8% Similarity=-0.100 Sum_probs=47.4
Q ss_pred hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC--------hHH
Q 018098 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--------LKG 282 (361)
Q Consensus 211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--------~~~ 282 (361)
..+.+..=+..+++.+++..|...-.-.++..... -.+.+.....++..+...+.. ...
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ 75 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------EDPVDEESIARLIELISLFPPEEPERKKFIKA 75 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------T---SHHHHHHHHHHHHHS-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 34555666667778888887776544444432211 011111223444555444432 223
Q ss_pred HHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHH
Q 018098 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321 (361)
Q Consensus 283 Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~ 321 (361)
|+.+. +.-...--++..+..+|..+..-+++.+|...|
T Consensus 76 ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 76 AIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33333 111111124677788888888888888777666
No 491
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=40.17 E-value=2.4e+02 Score=24.18 Aligned_cols=95 Identities=20% Similarity=0.100 Sum_probs=60.6
Q ss_pred hHHHHHhcchhH-----HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-----CC--
Q 018098 212 VDSIKVFGNEHY-----KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----GD-- 279 (361)
Q Consensus 212 a~~~~~~G~~~~-----~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-----~~-- 279 (361)
+...+..|+.++ ..++...|++.|..+.. .+.+.+..+++.++..- ++
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------------------~n~~~aC~~~gLl~~~g~~~r~~dpd 127 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------------------ANIPQACRYLGLLHWNGEKDRKADPD 127 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------------------cCCHHHHhhhhhhhccCcCCccCCCC
Confidence 344555566555 25578888888888765 23445666666665432 23
Q ss_pred hHHHHHHHHHHhhcCCCchhhHhHHHHHHHh------------------------cCCHHHHHHHHHHHHHhC
Q 018098 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMA------------------------LNDVDAAVESFEKALKLE 328 (361)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~------------------------l~~~~~A~~~~~~al~l~ 328 (361)
..+|+.+++++..++ +..+.+.+...|+. +.+.+.|.++--+|.+++
T Consensus 128 ~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 128 SEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred cHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 678889999998876 44455555444443 367778888877777775
No 492
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=40.02 E-value=3.2e+02 Score=25.66 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=66.1
Q ss_pred HHhhhHHHHHhcchhHH---------hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC
Q 018098 208 WMNAVDSIKVFGNEHYK---------KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~---------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~ 278 (361)
..+.+..++++|-.+.+ ....+.|..+|++|.-+..++.+.-... ....+.+....++..++.+..+.=
T Consensus 103 ~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~--ps~Dl~~~~l~~L~~lmLAQAQE~ 180 (348)
T cd09242 103 AFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHA--PSVDLQQENVKFLVKLMLAQAQEI 180 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccCCHHHHHHHHHHHHHHHHHH
Confidence 34456777777766654 3357889999999888776654321100 112255555556555554333311
Q ss_pred Ch--------------------HHHHHHHHHHhhc------------CCCc------------hhhHhHHHHHHHhcCCH
Q 018098 279 DL--------------------KGALLDTEFAMRD------------GDDN------------VKALFRQGQAYMALNDV 314 (361)
Q Consensus 279 ~~--------------------~~Al~~~~~al~~------------~p~~------------~ka~~~~a~a~~~l~~~ 314 (361)
-+ .++...|+.|... ++.+ +.++|+.|..+...+++
T Consensus 181 ~~~Kai~~~~~~~k~sliaKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~ 260 (348)
T cd09242 181 FLLKLINGDDAQKKASLISKLASATANLYESCVEFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKY 260 (348)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccH
Confidence 11 1233344444421 1111 23566677777777888
Q ss_pred HHHHHHHHHHHHh
Q 018098 315 DAAVESFEKALKL 327 (361)
Q Consensus 315 ~~A~~~~~~al~l 327 (361)
-+|+..++.|...
T Consensus 261 GeaIa~L~~A~~~ 273 (348)
T cd09242 261 GEAIAYLTQAESI 273 (348)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887664
No 493
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=39.85 E-value=47 Score=23.64 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=30.5
Q ss_pred cCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHH
Q 018098 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239 (361)
Q Consensus 202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al 239 (361)
.....+.++.|..+.+-|..++++|++-.|+.++.=+-
T Consensus 25 ~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~ 62 (75)
T PF04010_consen 25 YDAAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAH 62 (75)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567788899999999999999999999999865543
No 494
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=39.20 E-value=2.8e+02 Score=30.54 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 267 FTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 267 ~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
|..-|..|.+.|+.++|+..|..+.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhc
Confidence 4556778888899999998887765
No 495
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.03 E-value=58 Score=31.27 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC-CHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 018098 268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPN--DGGIKKELAVA 341 (361)
Q Consensus 268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~--~~~~~~~l~~~ 341 (361)
+-.|.+|+.+++|.+|+..+..+|-.-...-+.+.+.+..|...+ ++|+--..+.-++.+.|. |..+...+++.
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek 352 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEK 352 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHH
Confidence 668999999999999999999888553223334455566666554 666777778888888996 56666666665
No 496
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=38.85 E-value=71 Score=17.69 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098 266 IFTNSSACKLKLGDLKGALLDTEFAM 291 (361)
Q Consensus 266 ~~~nla~~~~~l~~~~~Al~~~~~al 291 (361)
.|..+-.++.+.|+++.|...++.-.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35555666667777777766666544
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.75 E-value=1.1e+02 Score=31.92 Aligned_cols=28 Identities=25% Similarity=0.105 Sum_probs=20.1
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098 298 VKALFRQGQAYMALNDVDAAVESFEKAL 325 (361)
Q Consensus 298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al 325 (361)
...+.+.|.-|...|+...|...|-+|-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 4566677888888888888877776553
No 498
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=38.50 E-value=1.9e+02 Score=22.47 Aligned_cols=67 Identities=7% Similarity=-0.001 Sum_probs=44.7
Q ss_pred HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCC--ccchhHHHHHHHHHHHHHHHHH
Q 018098 208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID--EGKSSSLRKTKSQIFTNSSACK 274 (361)
Q Consensus 208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~nla~~~ 274 (361)
.++.+......+..+...|+++.+.....+|..++..+...-+.+ .+....+.....-++..+..+.
T Consensus 25 Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~L~~A~ 93 (122)
T PF02561_consen 25 LYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQLVQAN 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777788888999999999999999999888765544443 3333444444444444444443
No 499
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=38.28 E-value=3.7e+02 Score=25.97 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=60.9
Q ss_pred HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh-------------
Q 018098 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL------------- 280 (361)
Q Consensus 214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~------------- 280 (361)
..+.+|..+|-.++|+.|...|+.+.+... + +...-..+.++--.|.|.+..+..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~--------~----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~ 277 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK--------N----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPY 277 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh--------h----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHH
Confidence 567789999999999999999999887221 0 001112233444445555555422
Q ss_pred -HHHHHHHHHH----hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098 281 -KGALLDTEFA----MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327 (361)
Q Consensus 281 -~~Al~~~~~a----l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 327 (361)
+.|...|.++ .........+....+.++..++.+.+|...+-+....
T Consensus 278 le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 278 LENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 3333334431 1122233556666777788889888877776666554
No 500
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=38.20 E-value=3.6e+02 Score=27.53 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330 (361)
Q Consensus 259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~ 330 (361)
.+|....++.+ -.+.-.+|..|+..|.+. .+ +...+|...|.++..++++..|..-|++++++-..
T Consensus 554 ad~~asecLRd---qLie~ErYqlaV~mckKc-~i--D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkge 619 (1141)
T KOG1811|consen 554 ADPAASECLRD---QLIEAERYQLAVEMCKKC-GI--DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGE 619 (1141)
T ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHhhc-CC--CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC
Confidence 34555544443 344556778887777664 22 34578888999999999999999999999998644
Done!