BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018099
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 184/324 (56%), Gaps = 22/324 (6%)
Query: 22 LMKNHKITVPESYLRLDQEPPNPLNGTHVPA------SIPTFDLESLLSKEDK--EFQLE 73
L K+ I++P+ Y+R +E + +N + +PT DL+++ S ++K E +E
Sbjct: 10 LAKSGIISIPKEYIRPKEELES-INDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIE 68
Query: 74 KLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYK--IKPGDVEGYGA- 130
+L +WG+ L+NHG+ + L+ ++K EF+ L +EEK KY G ++GYG+
Sbjct: 69 ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 131 -VARSDGKLDWGDRVYMITNPIQRRK-SHLPELPSSLRKTLESYFLELQKFALKLLGLVM 188
+ G+L+W D + + P ++R S P+ PS + Y L+ A K+ +
Sbjct: 129 LANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK-AL 187
Query: 189 GKALNIESKEIEEI---FEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAIT-ILHQVNG 244
L +E +E+ E+ + +++NYYP CP+PE+ +G+ H+D +A+T ILH N
Sbjct: 188 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH--NM 245
Query: 245 VDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFV 304
V GL++ +G W+ A+ +P+++V+++GD LEI+SNG Y+S+ HR VN K RIS A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 305 GPKFDAQV-GPLTSLINPDNPPLF 327
P D V PL +++ ++P F
Sbjct: 306 EPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 184/324 (56%), Gaps = 22/324 (6%)
Query: 22 LMKNHKITVPESYLRLDQEPPNPLNGTHVPA------SIPTFDLESLLSKEDK--EFQLE 73
L K+ I++P+ Y+R +E + +N + +PT DL+++ S ++K E +E
Sbjct: 9 LAKSGIISIPKEYIRPKEELES-INDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIE 67
Query: 74 KLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYK--IKPGDVEGYGA- 130
+L +WG+ L+NHG+ + L+ ++K EF+ L +EEK KY G ++GYG+
Sbjct: 68 ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 127
Query: 131 -VARSDGKLDWGDRVYMITNPIQRRK-SHLPELPSSLRKTLESYFLELQKFALKLLGLVM 188
+ G+L+W D + + P ++R S P+ PS + Y L+ A K+ +
Sbjct: 128 LANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK-AL 186
Query: 189 GKALNIESKEIEEI---FEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAIT-ILHQVNG 244
L +E +E+ E+ + +++NYYP CP+PE+ +G+ H+D +A+T ILH N
Sbjct: 187 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH--NM 244
Query: 245 VDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFV 304
V GL++ +G W+ A+ +P+++V+++GD LEI+SNG Y+S+ HR VN K RIS A F
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 304
Query: 305 GPKFDAQV-GPLTSLINPDNPPLF 327
P D V PL +++ ++P F
Sbjct: 305 EPPKDKIVLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 180/324 (55%), Gaps = 22/324 (6%)
Query: 22 LMKNHKITVPESYLRLDQEPPNPLNGTHVPA------SIPTFDLESLLSKEDK--EFQLE 73
L K+ I++P+ Y+R +E + +N + +PT DL+++ S ++K E +E
Sbjct: 10 LAKSGIISIPKEYIRPKEELES-INDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIE 68
Query: 74 KLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYK--IKPGDVEGYGA- 130
+L +WG+ L+NHG+ + L ++K EF+ L +EEK KY G ++GYG+
Sbjct: 69 ELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 131 -VARSDGKLDWGDRVYMITNPIQRRK-SHLPELPSSLRKTLESYFLELQKFALKLLGLVM 188
+ G+L+W D + + P ++R S P+ PS + Y L+ A K+ +
Sbjct: 129 LANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK-AL 187
Query: 189 GKALNIESKEIEEI---FEDGMQSVRMNYYPPCPKPEVVMGLTPHSDATAIT-ILHQVNG 244
L +E +E+ E+ + ++NYYP CP+PE+ +G+ H+D +A+T ILH N
Sbjct: 188 SVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH--NX 245
Query: 245 VDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFV 304
V GL++ +G W+ A+ +P+++V ++GD LEI+SNG Y+S+ HR VN K RIS A F
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 305 GPKFDAQV-GPLTSLINPDNPPLF 327
P D V PL ++ ++P F
Sbjct: 306 EPPKDKIVLKPLPEXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 11/281 (3%)
Query: 73 EKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKIKPGDVEGYGAVA 132
E + C+ WG F+LVNHG+ + ++ Y+ E++ K + +EG A
Sbjct: 22 EXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEV 81
Query: 133 RSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLELQKFALKLLGLVMGKAL 192
DW ++ PI S +P+L R+ + L+K A +LL L+ + L
Sbjct: 82 TD---XDWESTFFLKHLPISNI-SEVPDLDEEYREVXRDFAKRLEKLAEELLDLLC-ENL 136
Query: 193 NIESKEIEEIFEDGMQ---SVRMNYYPPCPKPEVVMGLTPHSDATAITILHQVNGVDGLE 249
+E ++ F +++ YPPCPKP+++ GL H+DA I +L Q + V GL+
Sbjct: 137 GLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ 196
Query: 250 IKKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVGPKFD 309
+ KDG WI +++VVN+GD LE+++NG Y+SV HR R S+A F P D
Sbjct: 197 LLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSD 256
Query: 310 AQVGPLTSLINP---DNPPLFRRVLMEEYVKTFFSRKLNGK 347
A + P +L+ +N ++ + + ++Y K + K K
Sbjct: 257 AVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 120/282 (42%), Gaps = 23/282 (8%)
Query: 61 SLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPMEEKMKYKI 120
SL +K+ F E L A + +G L ++ + + + F+ LP+E K +Y
Sbjct: 13 SLYAKDFTRFAQE-LGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAG 71
Query: 121 KPGDVEGY--GAVARSDGKLDWGDRVYMITN----PIQRRKSHLP------ELPSSLRKT 168
G GY V + G + + + P R ++H E+P+ +
Sbjct: 72 VKGGARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPA-FKHD 130
Query: 169 LESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPKPEVVMGLT 228
+ + L K+L + L +E + +DG +R+ +YPP PK +
Sbjct: 131 VSWLYNSLDGXGGKVLE-AIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAG 189
Query: 229 PHSDATAITILHQVNGVDGLEI-KKDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEH 287
H D IT+L GLE+ +DG W+P P LV+N+GD LE ++N V S H
Sbjct: 190 AHGDINTITLLLGAE-EGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVH 248
Query: 288 RATVNSVKERISIAFFVGPKF-----DAQVGPLTSLINPDNP 324
R VN ER + + P F D ++ L + + +NP
Sbjct: 249 R-VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENP 289
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 115/285 (40%), Gaps = 34/285 (11%)
Query: 47 GTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLE 106
G+H+ ++PTF L L + ++ ++ G+F L + G++ + L K +++
Sbjct: 18 GSHMDTTVPTFSLAEL----QQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVID 73
Query: 107 FYELPMEEKMKYKIKPG----------DVEGYGAVARSDGKLDWGDRVYMITNPIQRRKS 156
F+E E + + P + E + + D+ M T
Sbjct: 74 FFEHGSEAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------AD 127
Query: 157 HLPELPSSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYP 216
+L PS + + + + + Q A + + + +A E E F D +R Y+P
Sbjct: 128 NL--FPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFP 185
Query: 217 PCPK----PEVVMGLTPHSDATAITILHQV---NGVDGLEIKKDGVWIPARILPNALVVN 269
P+ E + + PH D + +T++ Q NG L+ + G + P+A++V
Sbjct: 186 QVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVF 245
Query: 270 VGDILEIMSNGVYRSVEH-----RATVNSVKERISIAFFVGPKFD 309
G I +++ G ++ H R + R S FF+ P D
Sbjct: 246 CGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 161 LPSSLRKTLESYFLELQKFALKLLGLVMGKALN-IESKEI----EEIFEDGMQSVRMNYY 215
+P SLR + +Y+ + A +LL + + + I++K E I +R+ +Y
Sbjct: 98 IPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHY 157
Query: 216 PPCPKPEVVMGL--TPHSDATAITILHQVNGVDGLEIK-KDGVWIPARILPNALVVNVGD 272
PP E + H D IT+L N GL++K KDG W+ +++N+GD
Sbjct: 158 PPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGD 216
Query: 273 ILEIMSNGVYRSVEHRAT----VNSVKERISIAFFVGP 306
L+ S+G + S HR + K RIS+ F+ P
Sbjct: 217 XLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 45/305 (14%)
Query: 47 GTHVPASIPTFDLESLLSKEDKEFQL---EKLHAICKEWGIFQLVNHGVSSSLLAKLKHD 103
G+ A++P D+ L +D+ ++ +++ A ++ G F VNHG++ + +L
Sbjct: 2 GSVSKANVPKIDVSPLFG-DDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQK 57
Query: 104 MLEFY-ELPMEEKMKYKIKPGDVEGYGAVARS-----DGKLDWGDRVYMITN-----PIQ 152
EF+ + EEK I+ + E V GK Y+ N P
Sbjct: 58 TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI 117
Query: 153 RRKSHLPELP--------SSLRKTLESYFLE---LQKFALKLLGLVMGKALNIESKEIEE 201
+ K+ E+ + E Y+ + L LK L +GK N ++ +
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 202 IFEDGMQSVRMNYYPPC-PKPEVV---------MGLTPHSDATAITILHQVNGVDGLEIK 251
+D + SV + YP P PE + H D + IT+L+Q N V L+++
Sbjct: 178 --DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVE 234
Query: 252 KDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRAT-VNSVKERISIAFFVGPKFDA 310
+ ++N G + ++N Y++ HR VN+ ER S+ FFV +D+
Sbjct: 235 TAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDS 292
Query: 311 QVGPL 315
+ P
Sbjct: 293 VIDPF 297
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 45/305 (14%)
Query: 47 GTHVPASIPTFDLESLLSKEDKEFQL---EKLHAICKEWGIFQLVNHGVSSSLLAKLKHD 103
G+ A++P D+ L +D+ ++ +++ A ++ G F VNHG++ + +L
Sbjct: 2 GSVSKANVPKIDVSPLFG-DDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQK 57
Query: 104 MLEFY-ELPMEEKMKYKIKPGDVEGYGAVARS-----DGKLDWGDRVYMITN-----PIQ 152
EF+ + EEK I+ + E V GK Y+ N P
Sbjct: 58 TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRI 117
Query: 153 RRKSHLPELP--------SSLRKTLESYFLE---LQKFALKLLGLVMGKALNIESKEIEE 201
+ K+ E+ + E Y+ + L LK L +GK N ++ +
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 202 IFEDGMQSVRMNYYPPC-PKPEVV---------MGLTPHSDATAITILHQVNGVDGLEIK 251
+D + SV + YP P PE + H D + IT+L+Q N V L+++
Sbjct: 178 --DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVE 234
Query: 252 KDGVWIPARILPNALVVNVGDILEIMSNGVYRSVEHRAT-VNSVKERISIAFFVGPKFDA 310
+ ++N G + ++N Y++ HR VN+ ER S+ FFV +D+
Sbjct: 235 TAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDS 292
Query: 311 QVGPL 315
+ P
Sbjct: 293 VIDPF 297
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 111/279 (39%), Gaps = 34/279 (12%)
Query: 53 SIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPM 112
++PTF L L + ++ ++ G+F L + G++ + L K +++F+E
Sbjct: 4 TVPTFSLAEL----QQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 113 EEKMKYKIKPG----------DVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELP 162
E + + P + E + + D+ M T +L P
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNL--FP 111
Query: 163 SSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPK-- 220
S + + + + + Q A + + + +A E E F D +R Y+P P+
Sbjct: 112 SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHR 171
Query: 221 --PEVVMGLTPHSDATAITILHQV---NGVDGLEIKKDGVWIPARILPNALVVNVGDILE 275
E + + PH D + +T++ Q NG L+ + G + P+A++V G I
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 276 IMSNGVYRSVEH-----RATVNSVKERISIAFFVGPKFD 309
+++ G ++ H R + R S FF+ P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 111/279 (39%), Gaps = 34/279 (12%)
Query: 53 SIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPM 112
++PTF L L + ++ ++ G+F L + G++ + L K +++F+E
Sbjct: 4 TVPTFSLAEL----QQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 113 EEKMKYKIKPG----------DVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELP 162
E + + P + E + + D+ M T +L P
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNL--FP 111
Query: 163 SSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPK-- 220
S + + + + + Q A + + + +A E E F D +R Y+P P+
Sbjct: 112 SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHR 171
Query: 221 --PEVVMGLTPHSDATAITILHQV---NGVDGLEIKKDGVWIPARILPNALVVNVGDILE 275
E + + PH D + +T++ Q NG L+ + G + P+A++V G I
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 276 IMSNGVYRSVEH-----RATVNSVKERISIAFFVGPKFD 309
+++ G ++ H R + R S FF+ P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 111/279 (39%), Gaps = 34/279 (12%)
Query: 53 SIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPM 112
++PTF L L + ++ ++ G+F L + G++ + L K +++F+E
Sbjct: 4 TVPTFSLAEL----QQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGS 59
Query: 113 EEKMKYKIKPG----------DVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELP 162
E + + P + E + + D+ M T +L P
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNL--FP 111
Query: 163 SSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPK-- 220
S + + + + + Q A + + + +A E E F D +R Y+P P+
Sbjct: 112 SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHR 171
Query: 221 --PEVVMGLTPHSDATAITILHQV---NGVDGLEIKKDGVWIPARILPNALVVNVGDILE 275
E + + PH D + +T++ Q NG L+ + G + P+A++V G I
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 276 IMSNGVYRSVEH-----RATVNSVKERISIAFFVGPKFD 309
+++ G ++ H R + R S FF+ P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 111/279 (39%), Gaps = 34/279 (12%)
Query: 53 SIPTFDLESLLSKEDKEFQLEKLHAICKEWGIFQLVNHGVSSSLLAKLKHDMLEFYELPM 112
++PTF L L + ++ ++ G+F L + G++ + L K +++F+E
Sbjct: 4 TVPTFSLAEL----QQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 113 EEKMKYKIKPG----------DVEGYGAVARSDGKLDWGDRVYMITNPIQRRKSHLPELP 162
E + + P + E + + D+ M T +L P
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT------ADNL--FP 111
Query: 163 SSLRKTLESYFLELQKFALKLLGLVMGKALNIESKEIEEIFEDGMQSVRMNYYPPCPK-- 220
S + + + + + Q A + + + +A E E F D +R Y+P P+
Sbjct: 112 SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHR 171
Query: 221 --PEVVMGLTPHSDATAITILHQV---NGVDGLEIKKDGVWIPARILPNALVVNVGDILE 275
E + + PH D + +T++ Q NG L+ + G + P+A++V G I
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIAT 231
Query: 276 IMSNGVYRSVEH-----RATVNSVKERISIAFFVGPKFD 309
+++ G ++ H R + + S FF+ P D
Sbjct: 232 LVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From
Archaeoglobus Fulgidus
Length = 256
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 222 EVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNG 280
E+ + + P AI+ L+ GV E ++DG WI +P+ + ++ D+L ++ G
Sbjct: 187 EIAIKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKG 245
>pdb|1T95|A Chain A, Crystal Structure Of The Shwachman-Bodian-Diamond Syndrome
Protein Orthologue From Archaeoglobus Fulgidus
Length = 240
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 222 EVVMGLTPHSDATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNG 280
E+ + + P AI+ L+ GV E ++DG WI +P+ ++ D+L ++ G
Sbjct: 171 EIAIKIPPEHTGRAISALYNFGGVTREEWQRDGSWICVXRIPSGXYGDLXDLLGKVAKG 229
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A+ DG+L GDR+ M+ N +H E + L+ T E +L+
Sbjct: 51 PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH-EEAVAILKNTSEVVYLK 109
Query: 176 LQK 178
+ K
Sbjct: 110 VGK 112
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A DGKL GD++ + N +H E ++L+ T + +L+
Sbjct: 38 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLK 96
Query: 176 LQK 178
+ K
Sbjct: 97 VAK 99
>pdb|2DUL|A Chain A, Crystal Structure Of Trna G26 Methyltransferase Trm1 In
Apo Form From Pyrococcus Horikoshii
pdb|2EJT|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S-Adenosyl- L-Methionine
pdb|2EJU|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S-Adenosyl- L-Homocystein
pdb|2YTZ|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S- Adenosyl-l-homocystein In The Orthorhombic
Crystal-lattice
pdb|2YTZ|B Chain B, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S- Adenosyl-l-homocystein In The Orthorhombic
Crystal-lattice
Length = 378
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 18/72 (25%)
Query: 163 SSLRKTLESYFLELQKFALKLLGLV--------------MGKALNIESKEIEEIF----E 204
S + K ES L +K ALKLL ++ +G+ L IE+K++EEI E
Sbjct: 288 SKMVKEAESLSLARKKQALKLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIISALRE 347
Query: 205 DGMQSVRMNYYP 216
G ++ R ++ P
Sbjct: 348 QGYEATRTHFSP 359
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 232 DATAITILHQVNGVDGLEIKKDGVWIPARILPNALVVNVGDILEIMSNGV 281
D + IL+ + VD ++ ++DG W P R A+ V+ +I S+ V
Sbjct: 272 DGLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSV 321
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A DGKL GD++ + N +H E ++L+ T + +L+
Sbjct: 36 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLK 94
Query: 176 LQK 178
+ K
Sbjct: 95 VAK 97
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A+ DG+L GDR+ + N + H E +SL+ T + +L+
Sbjct: 30 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH-EEAVASLKNTSDMVYLK 88
Query: 176 LQK 178
+ K
Sbjct: 89 VAK 91
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A DGKL GD++ + N +H E ++L+ T + +L+
Sbjct: 35 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH-EEAVTALKNTSDFVYLK 93
Query: 176 LQK 178
+ K
Sbjct: 94 VAK 96
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A DGKL GD++ + N +H E ++L+ T + +L+
Sbjct: 29 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH-EEAVTALKNTSDFVYLK 87
Query: 176 LQK 178
+ K
Sbjct: 88 VAK 90
>pdb|1TA9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
pdb|1TA9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
Length = 450
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 47 GTHVPASIPTFDLESLLSKEDKEFQLEKLHAICKEWG 83
G + A+ P F L SL + K F L +A+ + WG
Sbjct: 3 GPRLCAATPRFPLVSLAHRNSKVFALASSNAVAQRWG 39
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A DGKL GD++ + + +H E ++L+ T + +L+
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTH-EEAVTALKNTSDFVYLK 88
Query: 176 LQK 178
+ K
Sbjct: 89 VAK 91
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 122 PGDVEGY------GAVARSDGKLDWGDRVYMITNPIQRRKSHLPELPSSLRKTLESYFLE 175
PGD Y G A DGKL GD++ + N +H E ++L+ T + +L+
Sbjct: 26 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTH-EEAVTALKNTSDFVYLK 84
Query: 176 LQK 178
+ K
Sbjct: 85 VAK 87
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 151 IQRRKSHLPELPSSLRKTL---ESYFL-ELQKFALKLLGLVMGKALNIESKEIEEIFE 204
I R +SHL + R+TL E Y + EL+++ K+L GKAL +E + EE+F+
Sbjct: 477 ISRGQSHLAPINYXRRQTLKNAERYIIPELKEYEDKVL-TSKGKALALEKQLYEELFD 533
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 151 IQRRKSHLPELPSSLRKTL---ESYFL-ELQKFALKLLGLVMGKALNIESKEIEEIFE 204
I R +SHL + R+TL E Y + EL+++ K+L GKAL +E + EE+F+
Sbjct: 477 ISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVL-TSKGKALALEKQLYEELFD 533
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 151 IQRRKSHLPELPSSLRKTL---ESYFL-ELQKFALKLLGLVMGKALNIESKEIEEIFE 204
I R +SHL + R+TL E Y + EL+++ K+L GKAL +E + EE+F+
Sbjct: 477 ISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVL-TSKGKALALEKQLYEELFD 533
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 151 IQRRKSHLPELPSSLRKTL---ESYFL-ELQKFALKLLGLVMGKALNIESKEIEEIFE 204
I R +SHL + R+TL E Y + EL+++ K+L GKAL +E + EE+F+
Sbjct: 477 ISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVL-TSKGKALALEKQLYEELFD 533
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 151 IQRRKSHLPELPSSLRKTL---ESYFL-ELQKFALKLLGLVMGKALNIESKEIEEIFE 204
I R +SHL + R+TL E Y + EL+++ K+L GKAL +E + EE+F+
Sbjct: 477 ISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVL-TSKGKALALEKQLYEELFD 533
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 151 IQRRKSHLPELPSSLRKTL---ESYFL-ELQKFALKLLGLVMGKALNIESKEIEEIFE 204
I R +SHL + R+TL E Y + EL+++ K+L GKAL +E + EE+F+
Sbjct: 477 ISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVL-TSKGKALALEKQLYEELFD 533
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 151 IQRRKSHLPELPSSLRKTL---ESYFL-ELQKFALKLLGLVMGKALNIESKEIEEIFE 204
I R +SHL + R+TL E Y + EL+++ K+L GKAL +E + EE+F+
Sbjct: 476 ISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVL-TSKGKALALEKQLYEELFD 532
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,589,253
Number of Sequences: 62578
Number of extensions: 440281
Number of successful extensions: 1266
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 45
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)