BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018101
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 195/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 148
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 149 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 207
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
CT+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 208 CTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 267
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 268 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 327
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 328 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKEL 407
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 195/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 460 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 519
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 520 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 578
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
CT+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 579 CTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 638
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 639 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 698
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 699 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 758
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 759 SVTSIEERTRPNLSKTLKEL 778
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 195/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 118 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 177
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 178 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 236
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
CT+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 237 CTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 296
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 297 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 356
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 357 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 416
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 417 SVTSIEERTRPNLSKTLKEL 436
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 268 bits (684), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 195/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 99 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 158
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 159 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 217
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
CT+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 218 CTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 277
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 278 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 337
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 338 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 397
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 398 SVTSIEERTRPNLSKTLKEL 417
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 194/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 148
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 149 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 207
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
T+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 208 ATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 267
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 268 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 327
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 328 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKEL 407
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 194/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 86 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 145
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+ARVI+PG+T C ECT+ L+PPQV FP+
Sbjct: 146 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 204
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
T+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 205 ATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 264
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 265 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 324
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 325 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 384
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 385 SVTSIEERTRPNLSKTLKEL 404
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 194/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 148
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+A+VI+PG+T C ECT+ L+PPQV FP+
Sbjct: 149 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPPQVNFPM 207
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
T+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 208 ATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 267
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 268 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 327
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 328 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKEL 407
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 193/320 (60%), Gaps = 9/320 (2%)
Query: 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 61
+D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+IIV GLDSI AR +IN
Sbjct: 89 KDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWING 148
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ S L YE D +I P++DGGTEGFKG+A VI+PG+T C ECT+ L+PPQV FP+
Sbjct: 149 MLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPPQVNFPM 207
Query: 122 CTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178
T+A PR HCIEY +++W + G D DDPEH+QW++ ++++RA + I G
Sbjct: 208 ATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRG 267
Query: 179 VTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTYNGVAGLHIKVT 238
VTY LTQGVVK CA E KIA+ L+NYL +N V GL+
Sbjct: 268 VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF 327
Query: 239 EFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASV--TYRGKN--LYMQ 293
E + ++C C I+ S L++ ++ L LQ+ ++ T GKN LY+Q
Sbjct: 328 EAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQ 387
Query: 294 APPVLEEMTRSNLSLPLYDL 313
+ +EE TR NLS L +L
Sbjct: 388 SVTSIEERTRPNLSKTLKEL 407
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 4 VGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINA 61
VG+ KA+VA + V++ NIV + I + D + F+ F +++ LD+ AR+++N
Sbjct: 88 VGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNR 147
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ + P+++ GT G+ G I GVT C+EC P Q FP
Sbjct: 148 MCLA-------------ADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPG 192
Query: 122 CTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 171
CT+ TP HCI +A + + E + + PD DPE W +EA RA
Sbjct: 193 CTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 246
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 4 VGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINA 61
VG+ KA+VA + V++ NIV + I D ++ F+ F +++ LD+ AR+++N
Sbjct: 70 VGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNR 129
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ + P+++ GT G+ G I GVT C+EC P Q FP
Sbjct: 130 MCLA-------------ADVPLIESGTAGYLGQVTTIKKGVTECYECHP--KPTQRTFPG 174
Query: 122 CTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 171
CT+ TP HCI +A + + E + + PD DPE W +EA RA
Sbjct: 175 CTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 228
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 4 VGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINA 61
VG+ KA+VA + V++ NIV + I + D + F+ F +++ LD+ AR+++N
Sbjct: 68 VGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNR 127
Query: 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 121
+ + P+++ GT G+ G I GVT C+EC P Q FP
Sbjct: 128 MCLA-------------ADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPG 172
Query: 122 CTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 171
T+ TP HCI +A + + E + + PD DPE W +EA RA
Sbjct: 173 ATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 226
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 22/144 (15%)
Query: 2 EDVGKPKAEVAAKRVM----ERVSGVNIVPHFCRIEDKDI---SFYNDFNIIVLGLDSIE 54
+DVGK K+EVAA+ V + +N E ++I SF+ + + LD+++
Sbjct: 479 KDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVD 538
Query: 55 ARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFP 114
AR+Y++ C F KP+++ GT G KG+ +VIIP +T + + P
Sbjct: 539 ARTYVDR-RCVFYR------------KPLLESGTLGTKGNTQVIIPRLTESYSSS--RDP 583
Query: 115 PQVKFPLCTLAETPRTAAHCIEYA 138
P+ PLCTL P H I +A
Sbjct: 584 PEKSIPLCTLRSFPNKIDHTIAWA 607
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 22/144 (15%)
Query: 3 DVGKPKAEVA--AKRVMERVSGVNIVPHFCRI--EDKDI---SFYNDFNIIVLGLDSIEA 55
DVGK K+E A A +M I + R+ E + I F+ +++ LD++EA
Sbjct: 471 DVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEA 530
Query: 56 RSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPP 115
R Y++ C F E KP+++ GT G KG+ +V++P +T + + PP
Sbjct: 531 RMYVDR-RCVFFE------------KPLLESGTLGTKGNTQVVVPHLTESYGSS--QDPP 575
Query: 116 QVKFPLCTLAETPRTAAHCIEYAH 139
+ FP+CTL P H I +A
Sbjct: 576 EKSFPICTLKNFPNRIEHTIAWAR 599
>pdb|2LQ7|A Chain A, E2 Binding Surface On Uba3 Beta-Grasp Domain Undergoes A
Conformational Transition
Length = 97
Score = 35.4 bits (80), Expect = 0.043, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 255 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 310
I+ S L++ ++ L LQ+ ++T GKN LY+Q+ +EE TR NLS L
Sbjct: 8 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTL 67
Query: 311 YDL 313
+L
Sbjct: 68 KEL 70
>pdb|1Y8X|B Chain B, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
pdb|3FN1|A Chain A, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 98
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 255 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 310
I+ S L++ ++ L LQ ++T GKN LY Q+ +EE TR NLS L
Sbjct: 9 IQFSPSAKLQEVLDYLTNSASLQXKSPAITATLEGKNRTLYXQSVTSIEERTRPNLSKTL 68
Query: 311 YDL 313
+L
Sbjct: 69 KEL 71
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 116 QVKFPLCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKR 170
Q FP CT+ TP HCI +A + + E + + PD DPE W +EA R
Sbjct: 2 QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEAR 60
Query: 171 A 171
A
Sbjct: 61 A 61
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 19 RVSGVNIVPHFC-RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPRE 77
++ V HF RI + + ++++ +D+ EAR IN AC+ L +
Sbjct: 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTIN-TACNELGQTWMESGVS 171
Query: 78 ETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQV 117
E GH ++IIPG + CF C PP V
Sbjct: 172 EN----------AVSGHIQLIIPGESACFACA----PPLV 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,715,897
Number of Sequences: 62578
Number of extensions: 440705
Number of successful extensions: 898
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 24
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)