Query 018101
Match_columns 360
No_of_seqs 299 out of 2099
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2015 NEDD8-activating compl 100.0 3.4E-75 7.5E-80 543.2 23.4 331 1-345 88-421 (422)
2 cd01488 Uba3_RUB Ubiquitin act 100.0 1.7E-64 3.8E-69 480.6 21.2 245 1-250 47-291 (291)
3 KOG2013 SMT3/SUMO-activating c 100.0 1.6E-64 3.4E-69 491.6 15.7 315 1-350 60-526 (603)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.2E-59 2.6E-64 467.6 24.8 275 1-296 52-427 (435)
5 TIGR01408 Ube1 ubiquitin-activ 100.0 5.7E-57 1.2E-61 487.7 25.3 294 1-317 472-972 (1008)
6 cd01489 Uba2_SUMO Ubiquitin ac 100.0 2E-56 4.4E-61 429.4 18.9 234 1-249 47-312 (312)
7 KOG2012 Ubiquitin activating e 100.0 1.9E-55 4E-60 449.2 15.3 296 1-317 483-978 (1013)
8 cd01484 E1-2_like Ubiquitin ac 100.0 4.4E-54 9.5E-59 398.9 17.6 185 1-211 47-234 (234)
9 TIGR02355 moeB molybdopterin s 100.0 6.3E-28 1.4E-32 225.3 17.5 165 2-249 73-240 (240)
10 PRK07411 hypothetical protein; 100.0 5.8E-28 1.3E-32 240.3 17.4 170 1-251 86-257 (390)
11 PRK08762 molybdopterin biosynt 100.0 2.3E-27 5.1E-32 235.2 18.2 170 1-251 183-358 (376)
12 PRK05597 molybdopterin biosynt 100.0 1.7E-27 3.7E-32 234.3 16.9 167 1-248 76-244 (355)
13 PRK05600 thiamine biosynthesis 100.0 3.3E-27 7.3E-32 233.1 18.8 190 1-272 89-284 (370)
14 PRK05690 molybdopterin biosynt 99.9 5.6E-27 1.2E-31 219.6 17.1 163 1-246 80-245 (245)
15 PRK07878 molybdopterin biosynt 99.9 2E-26 4.3E-31 229.6 18.0 167 1-248 90-262 (392)
16 PRK12475 thiamine/molybdopteri 99.9 3.1E-26 6.6E-31 223.8 17.5 167 2-251 73-245 (338)
17 KOG2017 Molybdopterin synthase 99.9 1.5E-26 3.2E-31 219.0 12.6 170 1-251 114-286 (427)
18 PRK07688 thiamine/molybdopteri 99.9 8.7E-26 1.9E-30 220.7 17.4 167 2-251 73-245 (339)
19 PRK08223 hypothetical protein; 99.9 1.9E-25 4E-30 212.0 17.7 170 1-235 75-260 (287)
20 TIGR03603 cyclo_dehy_ocin bact 99.9 1.9E-25 4.2E-30 216.3 16.8 195 1-271 118-317 (318)
21 cd00757 ThiF_MoeB_HesA_family 99.9 2.3E-24 5E-29 199.9 16.5 152 2-234 70-223 (228)
22 PRK08328 hypothetical protein; 99.9 3.6E-24 7.8E-29 199.0 16.4 149 1-234 75-226 (231)
23 TIGR02356 adenyl_thiF thiazole 99.9 2.5E-24 5.4E-29 196.2 13.5 99 1-112 69-169 (202)
24 COG0476 ThiF Dinucleotide-util 99.9 4.4E-23 9.5E-28 194.2 15.6 170 1-250 78-253 (254)
25 cd01491 Ube1_repeat1 Ubiquitin 99.9 2.5E-22 5.5E-27 191.3 12.6 191 1-231 67-280 (286)
26 cd01492 Aos1_SUMO Ubiquitin ac 99.8 1.3E-20 2.8E-25 171.2 14.0 123 2-232 70-192 (197)
27 cd01485 E1-1_like Ubiquitin ac 99.8 1.5E-19 3.2E-24 164.3 13.0 83 2-97 70-155 (198)
28 KOG2014 SMT3/SUMO-activating c 99.8 8.6E-19 1.9E-23 164.0 13.3 216 2-234 80-323 (331)
29 PRK08644 thiamine biosynthesis 99.8 2.4E-18 5.2E-23 158.0 13.1 88 1-101 75-164 (212)
30 PF02134 UBACT: Repeat in ubiq 99.8 2.8E-19 6.1E-24 134.5 4.9 67 151-217 1-67 (67)
31 cd01487 E1_ThiF_like E1_ThiF_l 99.7 7.8E-18 1.7E-22 150.1 11.6 96 2-109 47-145 (174)
32 TIGR01381 E1_like_apg7 E1-like 99.7 2.1E-17 4.5E-22 170.4 15.5 94 2-109 387-519 (664)
33 PRK14852 hypothetical protein; 99.7 1.4E-17 2.9E-22 178.6 13.8 163 1-219 380-546 (989)
34 KOG2336 Molybdopterin biosynth 99.7 1E-17 2.2E-22 155.3 8.9 171 1-248 129-314 (422)
35 TIGR01408 Ube1 ubiquitin-activ 99.7 8.6E-17 1.9E-21 175.5 17.4 213 1-234 72-385 (1008)
36 PRK14851 hypothetical protein; 99.7 1.3E-16 2.7E-21 168.2 13.0 97 2-112 92-191 (679)
37 cd01493 APPBP1_RUB Ubiquitin a 99.7 1.1E-15 2.5E-20 153.2 19.0 94 2-109 69-165 (425)
38 PRK07877 hypothetical protein; 99.7 9.5E-17 2.1E-21 169.7 11.1 165 2-217 155-324 (722)
39 TIGR03736 PRTRC_ThiF PRTRC sys 99.7 4.2E-16 9.1E-21 145.5 12.8 112 1-125 68-193 (244)
40 PF08825 E2_bind: E2 binding d 99.7 1.3E-16 2.9E-21 124.8 6.6 84 255-346 1-84 (84)
41 PF00899 ThiF: ThiF family; I 99.6 4.3E-15 9.4E-20 126.7 8.1 83 2-97 51-134 (135)
42 cd01483 E1_enzyme_family Super 99.6 8.8E-15 1.9E-19 125.8 9.9 86 1-99 47-133 (143)
43 cd01486 Apg7 Apg7 is an E1-lik 99.6 9.8E-14 2.1E-18 132.4 15.9 84 2-99 48-151 (307)
44 TIGR02354 thiF_fam2 thiamine b 99.5 7.7E-14 1.7E-18 127.0 12.3 93 2-108 69-167 (200)
45 PF10585 UBA_e1_thiolCys: Ubiq 99.5 8.4E-15 1.8E-19 101.2 0.4 44 101-147 1-44 (45)
46 cd00755 YgdL_like Family of ac 99.3 1.2E-11 2.6E-16 115.0 8.7 78 2-92 60-139 (231)
47 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.2 1.8E-11 3.9E-16 96.2 5.8 56 195-251 26-82 (84)
48 TIGR03693 ocin_ThiF_like putat 99.2 5.9E-11 1.3E-15 122.0 10.1 154 13-251 175-336 (637)
49 PRK15116 sulfur acceptor prote 99.1 1.1E-10 2.3E-15 110.7 8.3 78 2-92 79-158 (268)
50 KOG2012 Ubiquitin activating e 99.1 1.1E-10 2.3E-15 121.8 8.8 90 1-109 85-174 (1013)
51 PRK06153 hypothetical protein; 99.1 3.5E-10 7.6E-15 111.4 11.7 89 2-111 226-317 (393)
52 COG1179 Dinucleotide-utilizing 99.1 9.9E-11 2.1E-15 107.6 6.5 77 2-91 79-157 (263)
53 KOG2016 NEDD8-activating compl 99.1 1.4E-09 2.9E-14 107.0 11.8 87 2-101 76-165 (523)
54 PF14732 UAE_UbL: Ubiquitin/SU 98.9 4.1E-09 8.9E-14 83.4 7.3 80 256-348 3-84 (87)
55 PF09358 UBA_e1_C: Ubiquitin-a 98.8 2.3E-08 5E-13 84.4 7.6 81 252-347 34-114 (125)
56 KOG2018 Predicted dinucleotide 98.3 4.3E-06 9.2E-11 79.7 10.5 78 2-92 123-202 (430)
57 KOG2337 Ubiquitin activating E 97.7 0.00018 4E-09 72.8 9.1 77 5-95 395-489 (669)
58 PTZ00245 ubiquitin activating 96.8 0.0023 4.9E-08 60.2 5.7 49 2-55 74-122 (287)
59 TIGR03882 cyclo_dehyd_2 bacter 92.2 0.19 4.1E-06 45.6 4.3 46 51-109 146-193 (193)
60 PF01113 DapB_N: Dihydrodipico 85.1 3.4 7.3E-05 34.4 6.7 41 37-92 62-102 (124)
61 cd01490 Ube1_repeat2 Ubiquitin 79.4 3.1 6.6E-05 42.5 5.1 27 152-178 250-276 (435)
62 PF11543 UN_NPL4: Nuclear pore 75.9 2.1 4.6E-05 33.1 2.2 59 253-322 16-75 (80)
63 PF13241 NAD_binding_7: Putati 72.3 23 0.0005 28.3 7.6 64 10-87 17-92 (103)
64 PF10087 DUF2325: Uncharacteri 65.6 40 0.00087 26.6 7.6 67 10-91 13-86 (97)
65 TIGR00696 wecB_tagA_cpsF bacte 64.9 28 0.0006 31.0 7.2 57 8-64 60-122 (177)
66 PRK05562 precorrin-2 dehydroge 62.6 40 0.00088 31.3 8.0 65 11-88 36-118 (223)
67 COG4015 Predicted dinucleotide 61.7 23 0.0005 31.5 5.8 60 3-64 69-131 (217)
68 COG1748 LYS9 Saccharopine dehy 59.8 18 0.00039 36.4 5.5 53 24-90 48-102 (389)
69 cd06533 Glyco_transf_WecG_TagA 55.4 46 0.001 29.2 6.9 56 9-64 59-121 (171)
70 cd01763 Sumo Small ubiquitin-r 53.3 44 0.00095 25.9 5.7 55 252-322 23-78 (87)
71 PF03435 Saccharop_dh: Sacchar 51.4 22 0.00048 35.2 4.7 52 21-86 44-97 (386)
72 PF01118 Semialdhyde_dh: Semia 50.4 21 0.00045 29.3 3.6 62 12-88 15-98 (121)
73 PF03808 Glyco_tran_WecB: Glyc 50.4 63 0.0014 28.4 6.9 56 9-64 61-123 (172)
74 PRK00048 dihydrodipicolinate r 48.4 1.1E+02 0.0024 28.7 8.6 63 14-92 19-95 (257)
75 cd01812 BAG1_N Ubiquitin-like 48.1 43 0.00092 24.3 4.7 53 254-322 13-66 (71)
76 COG1648 CysG Siroheme synthase 48.0 68 0.0015 29.4 6.9 67 10-89 22-106 (210)
77 PF11976 Rad60-SLD: Ubiquitin- 46.9 45 0.00098 24.4 4.7 55 253-322 13-68 (72)
78 TIGR01851 argC_other N-acetyl- 46.5 68 0.0015 31.3 7.0 75 16-104 20-98 (310)
79 PF00240 ubiquitin: Ubiquitin 44.6 50 0.0011 23.8 4.6 51 253-317 8-59 (69)
80 cd01800 SF3a120_C Ubiquitin-li 42.7 39 0.00083 25.4 3.8 59 245-317 2-61 (76)
81 TIGR01470 cysG_Nterm siroheme 41.3 2.1E+02 0.0046 25.8 9.1 40 37-89 64-103 (205)
82 PF14560 Ubiquitin_2: Ubiquiti 41.0 36 0.00077 26.3 3.4 69 252-335 15-85 (87)
83 PF13847 Methyltransf_31: Meth 39.5 54 0.0012 27.6 4.7 44 4-49 36-80 (152)
84 PRK10637 cysG siroheme synthas 38.4 1.1E+02 0.0023 31.4 7.4 54 11-64 23-94 (457)
85 cd01806 Nedd8 Nebb8-like ubiq 36.4 1.2E+02 0.0026 22.1 5.6 55 252-322 12-67 (76)
86 cd01796 DDI1_N DNA damage indu 33.2 59 0.0013 24.1 3.4 24 253-276 12-35 (71)
87 smart00455 RBD Raf-like Ras-bi 30.5 56 0.0012 24.4 2.9 29 252-280 11-39 (70)
88 PRK11863 N-acetyl-gamma-glutam 30.0 1.7E+02 0.0037 28.6 6.9 74 16-103 21-98 (313)
89 PF12847 Methyltransf_18: Meth 29.5 1E+02 0.0022 24.0 4.4 41 9-50 38-78 (112)
90 PF11470 TUG-UBL1: GLUT4 regul 28.7 80 0.0017 23.4 3.4 27 252-280 8-34 (65)
91 PRK06719 precorrin-2 dehydroge 26.5 3.9E+02 0.0084 23.0 7.9 28 37-64 65-92 (157)
92 cd01794 DC_UbP_C dendritic cel 26.3 96 0.0021 23.0 3.5 24 251-274 9-32 (70)
93 cd01798 parkin_N amino-termina 25.1 95 0.0021 22.6 3.3 52 252-317 10-62 (70)
94 cd01807 GDX_N ubiquitin-like d 25.0 1E+02 0.0022 22.8 3.5 52 252-317 12-64 (74)
95 PRK04148 hypothetical protein; 24.3 2.7E+02 0.0058 23.7 6.3 40 25-64 60-99 (134)
96 PF05798 Phage_FRD3: Bacteriop 23.6 1.7E+02 0.0036 22.0 4.2 48 10-64 12-59 (75)
97 cd01793 Fubi Fubi ubiquitin-li 23.2 1E+02 0.0022 22.8 3.2 51 253-317 11-62 (74)
98 PF03618 Kinase-PPPase: Kinase 23.0 3.8E+02 0.0083 25.4 7.6 65 9-86 12-83 (255)
99 cd01799 Hoil1_N Ubiquitin-like 22.5 1.3E+02 0.0028 22.7 3.6 26 249-274 11-36 (75)
100 cd01810 ISG15_repeat2 ISG15 ub 22.1 1.2E+02 0.0026 22.4 3.4 52 252-317 10-62 (74)
101 PF02196 RBD: Raf-like Ras-bin 22.0 84 0.0018 23.5 2.5 29 252-280 12-40 (71)
102 cd02068 radical_SAM_B12_BD B12 22.0 2.6E+02 0.0056 22.7 5.8 55 8-62 54-110 (127)
103 cd01760 RBD Ubiquitin-like dom 20.9 1.1E+02 0.0024 23.1 2.9 27 252-278 11-37 (72)
104 cd05402 NT_PAP_TUTase Nucleoti 20.8 4.3E+02 0.0092 20.8 7.2 53 11-64 8-61 (114)
105 smart00213 UBQ Ubiquitin homol 20.6 1.3E+02 0.0029 20.7 3.2 22 253-274 12-33 (64)
106 PRK08057 cobalt-precorrin-6x r 20.1 1.4E+02 0.003 28.1 4.1 48 24-84 43-96 (248)
No 1
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-75 Score=543.22 Aligned_cols=331 Identities=46% Similarity=0.763 Sum_probs=315.6
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++|||+|||++||++++++.|++.|.+|..+|++++++||++||+||+++|++++|+|||.+.+.+..+ |.++...-
T Consensus 88 ~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~---g~~d~~~i 164 (422)
T KOG2015|consen 88 ESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLE---GNYDISSI 164 (422)
T ss_pred ccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhc---cCCCccce
Confidence 579999999999999999999999999999999999999999999999999999999999999876654 77888889
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCC-CCCCCCChhH
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG-KSFDPDDPEH 159 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~-~~fd~dd~~~ 159 (360)
+||||||++|++|++++|+|+.|+|++|..+.+|++.++|+|||+|+|+.|||||+|++.++|++.++. ..+|.||++|
T Consensus 165 iPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~h 244 (422)
T KOG2015|consen 165 IPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEH 244 (422)
T ss_pred eeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876 6799999999
Q ss_pred HHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeeeee
Q 018101 160 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTE 239 (360)
Q Consensus 160 l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~~~ 239 (360)
++||++.+++||.+|+|.++++.+++|++++||||+|+|||+||+.+|.|++|+++....+++||++|++..|.+++++.
T Consensus 245 I~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~ 324 (422)
T KOG2015|consen 245 IEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFL 324 (422)
T ss_pred HHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred cccCCCCccCCC-ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeC-CcEEEecCCCChhHhhhccCCCchHHhhccc
Q 018101 240 FVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEMTRSNLSLPLYDLMDKV 317 (360)
Q Consensus 240 ~~~~~~C~vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~-~~~LY~~~~~~~~~~~~~~L~k~l~elv~~g 317 (360)
++|.++|++|+. ...+.+.+..||+++++++++.+ ++..|.+++. ...||.++++++++.+++||.++|.|| .+|
T Consensus 325 ~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~--~lk~p~~tt~~~~~ly~~~~~~~e~~t~~nl~~~l~~l-~dg 401 (422)
T KOG2015|consen 325 LERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSF--QLKSPALTTAAGRTLYLSSVPSIEEATRKNLSQSLKEL-SDG 401 (422)
T ss_pred eccCCCCccccCCCcccccCCcccHHHHHHHhhhhh--ccCCchhhhhhcceEeecCCcHHHHHhhhhhhhhHHHh-cCC
Confidence 999999999998 77778888999999999999765 9999999854 579999999999999999999999999 888
Q ss_pred ccceeeeccccccccCCcceeEEEEEEE
Q 018101 318 AKDILHVTGVTGQSDKKTSCLRKLRVVF 345 (360)
Q Consensus 318 ~~~~l~~~~~~~v~d~~~~~~~~~~~~~ 345 (360)
.+| .|||.+.+..+.|+|++
T Consensus 402 --~~l------~vtd~~~~~~l~~~l~~ 421 (422)
T KOG2015|consen 402 --QEL------VVTDKTLSTALTLQLRE 421 (422)
T ss_pred --ceE------EEecccCCcceeEEEec
Confidence 899 99999999999999986
No 2
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.7e-64 Score=480.57 Aligned_cols=245 Identities=62% Similarity=1.060 Sum_probs=232.1
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++||||+||++|+++++++||+++|+++..++++++.+|+++||+|++|+||+++|+|+|++|..+..+. ....+
T Consensus 47 ~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~-----~~~~~ 121 (291)
T cd01488 47 EKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYE-----DPESI 121 (291)
T ss_pred hHHcchHHHHHHHHHHHHHCCCCEEEEEecccCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhcccc-----ccccC
Confidence 3799999999999999999999999999999998889999999999999999999999999987432210 11457
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhHH
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHM 160 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~l 160 (360)
+|||++|+.|++|++++++|+.|+||+|.++..|+++++|+|||+++|++|||||+||+.++|++.++..+||+||++|+
T Consensus 122 iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~ 201 (291)
T cd01488 122 IPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHI 201 (291)
T ss_pred ccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHH
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeeeeec
Q 018101 161 QWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEF 240 (360)
Q Consensus 161 ~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~~~~ 240 (360)
+||++.|++||++|||++.+++.++|+++||||||+||||||||++++|++|+++++.+.++||++|.|..|.+++++++
T Consensus 202 ~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~ 281 (291)
T cd01488 202 EWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEH 281 (291)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccCC
Q 018101 241 VKDKDCLVCG 250 (360)
Q Consensus 241 ~~~~~C~vC~ 250 (360)
+|+|+|++|+
T Consensus 282 ~~~~~c~~c~ 291 (291)
T cd01488 282 ERKEDCPVCS 291 (291)
T ss_pred eeCCCCCCCC
Confidence 9999999997
No 3
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-64 Score=491.59 Aligned_cols=315 Identities=29% Similarity=0.482 Sum_probs=259.0
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCC--cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED--KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~--~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
++|||++||.||++.++++||++++++|+.+|.+ ++.+||++||+|++|+||.+||+|+|++|. .
T Consensus 60 kkhVgqsKA~vA~~~v~~Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~-------------~ 126 (603)
T KOG2013|consen 60 KKHVGQSKATVAAKAVKQFNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCL-------------A 126 (603)
T ss_pred hhhcCchHHHHHHHHHHHhCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHH-------------h
Confidence 4799999999999999999999999999999987 468999999999999999999999999998 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhc-----------
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH----------- 147 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~----------- 147 (360)
+.+|||++||.||.||+++|++|.|+||+|... |.+++||+|||||+|+.|+|||+|||.+.|.++|
T Consensus 127 a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK--~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~ 204 (603)
T KOG2013|consen 127 ASVPLIESGTGGFLGQVQVIIKGKTECYECIPK--PVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRH 204 (603)
T ss_pred hcCCceecCcccccceEEEEecCCcceecccCC--CCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccc
Confidence 899999999999999999999999999999875 6778899999999999999999999953222211
Q ss_pred --------------------------------------------------------------------------------
Q 018101 148 -------------------------------------------------------------------------------- 147 (360)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (360)
T Consensus 205 d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i 284 (603)
T KOG2013|consen 205 DNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVI 284 (603)
T ss_pred cccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhcc
Confidence
Q ss_pred -------------------------------------------------CC--CCCCCCChhHHHHHHHHHHHHHHHcCC
Q 018101 148 -------------------------------------------------SG--KSFDPDDPEHMQWVYSEAVKRAELFGI 176 (360)
Q Consensus 148 -------------------------------------------------~~--~~fd~dd~~~l~fi~~~anlra~~~~I 176 (360)
++ +.|||||...|+||.++||+||+.|||
T Consensus 285 ~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~i 364 (603)
T KOG2013|consen 285 STSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGI 364 (603)
T ss_pred CCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhcc
Confidence 22 569999999999999999999999999
Q ss_pred CCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccC----ceeeeeecccCCCCccCCC-
Q 018101 177 PGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAG----LHIKVTEFVKDKDCLVCGP- 251 (360)
Q Consensus 177 ~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~----~~~~~~~~~~~~~C~vC~~- 251 (360)
+..+.+++++||||||||||||||+|||+++.|++|+|+|.-...+. .++.+... ....-...+|||+||||+.
T Consensus 365 pmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~-~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~ 443 (603)
T KOG2013|consen 365 PMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNM-IFLAKRPNPRKRVLLPWALRPPNPNCPVCSEV 443 (603)
T ss_pred chhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhccchhccee-eEEccCCCccceeecccccCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999875332222 22222211 1111223579999999998
Q ss_pred ceEEEeC-CCCCHHHHHHHHhcCccccceeceeeeCC-cEEEecCCCChhHhhhccCCCchHHh-hcccccceeeecccc
Q 018101 252 GVLIELD-TSVTLEKFINLLEEHPKLQLAKASVTYRG-KNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVT 328 (360)
Q Consensus 252 ~~~~~~~-~~~Tl~~li~~l~~~~~~~l~~~~i~~~~-~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l~~~~~~ 328 (360)
...+.++ ..+|+++|++.+.+. .+++ .|.++.-+ .++|+. .++.||.|+|+|| +.+| ..+
T Consensus 444 ~~~l~ln~~~~~~~~L~D~ivk~-r~~~-~pdvsll~~~Li~~~-------d~e~n~~k~lsel~i~ng--sli------ 506 (603)
T KOG2013|consen 444 PLVLELNTRKSTLRDLVDKIVKT-RLGY-LPDVSLLDDDLIDDM-------DFEDNLDKTLSELGILNG--SLI------ 506 (603)
T ss_pred ceEEEeccccchHHHHHHHHHHH-Hhcc-Ccccchhhhhhcccc-------cchhhhhhhHHhhCCCCC--ceE------
Confidence 7677776 468999999988654 4566 55666443 333322 3667999999999 9999 677
Q ss_pred ccccCCcceeEEEEEEEecCCC
Q 018101 329 GQSDKKTSCLRKLRVVFRGVDG 350 (360)
Q Consensus 329 ~v~d~~~~~~~~~~~~~~~~~~ 350 (360)
.+.|+..+.. +.++|.++.+
T Consensus 507 ~~~~e~~d~~--~~~~~~~~~~ 526 (603)
T KOG2013|consen 507 NVKDEILDPV--LEVHFTESRN 526 (603)
T ss_pred eeecccCCcc--eeeeeccccc
Confidence 7888655433 4488876533
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=1.2e-59 Score=467.58 Aligned_cols=275 Identities=27% Similarity=0.401 Sum_probs=234.4
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCC-----cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKP 75 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~-----~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~ 75 (360)
++|||++||++|+++++++||+++|+++..++.+ ++++|++++|+|++|+||+++|+++|++|+
T Consensus 52 ~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~----------- 120 (435)
T cd01490 52 PHDVGKPKSEVAAAAVKAMNPDLKITALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCV----------- 120 (435)
T ss_pred hhHcCcHHHHHHHHHHHHHCCCCEEEEEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHH-----------
Confidence 4699999999999999999999999999999974 346899999999999999999999999999
Q ss_pred cccCCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhh--------------
Q 018101 76 REETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI-------------- 141 (360)
Q Consensus 76 ~~~~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~-------------- 141 (360)
..++|||++|+.|++|++++++|+.|+||+|..+ |+++++|.||+++||+.|||||+|||++
T Consensus 121 --~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~--p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~ 196 (435)
T cd01490 121 --YYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRD--PPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQ 196 (435)
T ss_pred --HhCCCEEEEecccceeEEEEEeCCCCCCccCCCC--CCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccchHHHHH
Confidence 7899999999999999999999999999999854 7788999999999999999999999986
Q ss_pred -------hhhhh-----c----------------------------------------------------------CCCC
Q 018101 142 -------KWDEV-----H----------------------------------------------------------SGKS 151 (360)
Q Consensus 142 -------~w~~~-----~----------------------------------------------------------~~~~ 151 (360)
.|++. | +-..
T Consensus 197 ~~~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 197 YLFEDCVRWARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 34321 0 1113
Q ss_pred CCCCChh--HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCC---cccceee
Q 018101 152 FDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK---TLSNYLT 226 (360)
Q Consensus 152 fd~dd~~--~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~---~l~n~~~ 226 (360)
|||||+. ||+||+++||+||++|+|++.+++++++|||+||||||||||+|||++++|++|++++..+ .-+.|+.
T Consensus 277 FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~n 356 (435)
T cd01490 277 FEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLN 356 (435)
T ss_pred cccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhh
Confidence 8888875 9999999999999999999999999999999999999999999999999999999998742 1122333
Q ss_pred eecccCceeeeeecccCCCCccC--C---C-ceEEEeCCCCCHHHHH-HHHhcCccccceeceeeeCCcEEEecCCC
Q 018101 227 YNGVAGLHIKVTEFVKDKDCLVC--G---P-GVLIELDTSVTLEKFI-NLLEEHPKLQLAKASVTYRGKNLYMQAPP 296 (360)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~C~vC--~---~-~~~~~~~~~~Tl~~li-~~l~~~~~~~l~~~~i~~~~~~LY~~~~~ 296 (360)
...+ ...+..+..|.+..| + + |++++++.++|+++|+ ++++++| ++++.||+.|+++||.++++
T Consensus 357 la~p----~~~~~~p~~~~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~--~~~v~~i~~g~~~ly~~~~~ 427 (435)
T cd01490 357 LALP----FFAFSEPIPAPKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKY--GLEVTMLSQGVSMLYSSFMP 427 (435)
T ss_pred ccCC----ccccccCCCCCccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHh--CCeEEEEEeCCeEEEeecCC
Confidence 2222 223333333334455 2 3 9999999899999999 9999987 88999999999999999854
No 5
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5.7e-57 Score=487.66 Aligned_cols=294 Identities=26% Similarity=0.404 Sum_probs=249.4
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCC-----cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKP 75 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~-----~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~ 75 (360)
++||||+||++|+++++++||+++|+++..++.+ ++++||+++|+|++|+||+++|+|+|++|+
T Consensus 472 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~----------- 540 (1008)
T TIGR01408 472 PHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCL----------- 540 (1008)
T ss_pred hhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHH-----------
Confidence 3699999999999999999999999999999964 346899999999999999999999999999
Q ss_pred cccCCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhh--------------
Q 018101 76 REETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI-------------- 141 (360)
Q Consensus 76 ~~~~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~-------------- 141 (360)
.+++|||++|+.|++|++++++|+.|+||+|..+ |+++++|.|||++||+.|+|||+||+++
T Consensus 541 --~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d--~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~ 616 (1008)
T TIGR01408 541 --AFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRD--PPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNK 616 (1008)
T ss_pred --HcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCC--CCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8899999999999999999999999999999864 7889999999999999999999999862
Q ss_pred -------------------------------------------hhhhh-----c--------------------------
Q 018101 142 -------------------------------------------KWDEV-----H-------------------------- 147 (360)
Q Consensus 142 -------------------------------------------~w~~~-----~-------------------------- 147 (360)
.|++. |
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~ 696 (1008)
T TIGR01408 617 YLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSS 696 (1008)
T ss_pred HhhChHHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccC
Confidence 01110 0
Q ss_pred --------------------------------------------------------------------------------
Q 018101 148 -------------------------------------------------------------------------------- 147 (360)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (360)
T Consensus 697 ~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~ 776 (1008)
T TIGR01408 697 PKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPE 776 (1008)
T ss_pred CCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhccccccc
Confidence
Q ss_pred -------------------------CCCCCCCCChh--HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHH
Q 018101 148 -------------------------SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNA 200 (360)
Q Consensus 148 -------------------------~~~~fd~dd~~--~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~A 200 (360)
.|+.|||||+. ||+||+|+||+||++|+|+..+++++|+|||+||||||||||
T Consensus 777 ~~~~~~~~l~~~l~~~~~~~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA 856 (1008)
T TIGR01408 777 DDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTA 856 (1008)
T ss_pred chHHHHHHHHHHhhccccccCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHH
Confidence 12459999877 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCCcccceeeeecccCceeeeeecccCCCCccC-----C-C-ceEEEeCCCCCHHHHHHHHhcC
Q 018101 201 IISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC-----G-P-GVLIELDTSVTLEKFINLLEEH 273 (360)
Q Consensus 201 ivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~C~vC-----~-~-~~~~~~~~~~Tl~~li~~l~~~ 273 (360)
+||||+++|++|++.|.. ++..|.+...+.++....+ .+|.|-|..| . + |+++.+..++||++|+++++++
T Consensus 857 ~vaGLv~lEl~Kv~~~~~-~i~~~kn~f~nlalp~~~~-seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~ 934 (1008)
T TIGR01408 857 TVSGLVCLELIKVTDGGY-KFEVYKNCFLNLAIPLFVF-TEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEK 934 (1008)
T ss_pred HHHHHHHHHHHHHHhccc-cHHHHhHHHHhhccccccc-cCCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHH
Confidence 999999999999999863 2332222111222222222 2345556666 2 4 8999998899999999999998
Q ss_pred ccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHhhccc
Q 018101 274 PKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKV 317 (360)
Q Consensus 274 ~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~elv~~g 317 (360)
| ++++.||+.|+++||.++++ ..++||+++|+||++..
T Consensus 935 ~--~~~v~~is~g~~~lY~~~~~----~~~erl~~~l~el~~~~ 972 (1008)
T TIGR01408 935 Y--GLEPTMVSQGVKLLYVPVMP----GHAERLKLKMHKLVKPT 972 (1008)
T ss_pred h--CCeeEEEEcCceEEEeccch----hhHHhcCCCHHHHHHHh
Confidence 7 88999999999999999853 34578999999998776
No 6
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2e-56 Score=429.43 Aligned_cols=234 Identities=34% Similarity=0.587 Sum_probs=206.6
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCC--cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED--KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~--~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
++||||+||++|+++++++||+++|+++..++.+ ++.+|+++||+||+|+||+++|+++|++|+ .
T Consensus 47 ~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~-------------~ 113 (312)
T cd01489 47 KKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCL-------------A 113 (312)
T ss_pred hhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------H
Confidence 4799999999999999999999999999999986 457999999999999999999999999999 7
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhh-----------------
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI----------------- 141 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~----------------- 141 (360)
.++|||++|+.|++|++++++|+.|+||+|..+ ++++++|.|||+++|+.|+|||+||+++
T Consensus 114 ~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~--~~~~~~pictI~~~p~~~~hci~~a~~~f~~~~~~f~~~i~~l~~ 191 (312)
T cd01489 114 ADVPLIESGTTGFLGQVQVIKKGKTECYECQPK--ETPKTFPVCTIRSTPSQPIHCIVWAKSLFFLFNKVFKDDIERLLS 191 (312)
T ss_pred CCCCEEEEecCcceeEEEEEcCCCCCccCCCCC--CCCCcCCcceecCCCCCCEeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999976 5567899999999999999999999987
Q ss_pred ---hhhhhcCC-------CCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHH
Q 018101 142 ---KWDEVHSG-------KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 211 (360)
Q Consensus 142 ---~w~~~~~~-------~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~l 211 (360)
.|.....| +.|||||++||+||+++||+||++|||++.+++++++||||||||||||||||||++++|++
T Consensus 192 ~~~~w~~~~~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~ 271 (312)
T cd01489 192 MEELWKTRKPPVPLSWKELTFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEAL 271 (312)
T ss_pred hhhhhcCCCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Confidence 78765433 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCcccc-eeee--ecccCceeeeeecccCCCCccC
Q 018101 212 KIASGCSKTLSN-YLTY--NGVAGLHIKVTEFVKDKDCLVC 249 (360)
Q Consensus 212 Kil~~~~~~l~n-~~~~--~~~~~~~~~~~~~~~~~~C~vC 249 (360)
|++++.....++ |+.+ .+...........+|||+|.+|
T Consensus 272 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~~c 312 (312)
T cd01489 272 KVLSGDKEQCRTVFLNLQPNRRKRLLVPCKLDPPNPNCYVC 312 (312)
T ss_pred HHHhhhHHHhhhHhhhcccCCCCcEecCCCCCCcCCCCCCC
Confidence 999987443333 3221 2222223333346789999999
No 7
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-55 Score=449.17 Aligned_cols=296 Identities=27% Similarity=0.390 Sum_probs=247.3
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCC-----cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKP 75 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~-----~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~ 75 (360)
+.||||+|+++||++++.+||+++|+++..++.. ++++||++.|+|.+|+||++||+|+++.|+
T Consensus 483 ~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv----------- 551 (1013)
T KOG2012|consen 483 PWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCV----------- 551 (1013)
T ss_pred ccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhh-----------
Confidence 4699999999999999999999999999999974 689999999999999999999999999998
Q ss_pred cccCCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhh--------------
Q 018101 76 REETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI-------------- 141 (360)
Q Consensus 76 ~~~~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~-------------- 141 (360)
-.++||+++||.|++|++++++|+.|+.|.... +||++++|+||++|||..+||||+|||+.
T Consensus 552 --~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~--DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~ 627 (1013)
T KOG2012|consen 552 --YYRKPLLESGTLGTKGNTQVVVPHLTESYGSSR--DPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNK 627 (1013)
T ss_pred --hhccchhhccCcCCccceeEEeccccccccccC--CCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 678999999999999999999999999998765 59999999999999999999999999951
Q ss_pred ------------------------------------------hhhhhc--------------------------------
Q 018101 142 ------------------------------------------KWDEVH-------------------------------- 147 (360)
Q Consensus 142 ------------------------------------------~w~~~~-------------------------------- 147 (360)
.|.+.+
T Consensus 628 yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~p 707 (1013)
T KOG2012|consen 628 YLSDPVFYETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGP 707 (1013)
T ss_pred HhcCchHHHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCC
Confidence 122210
Q ss_pred --------------------------------------------------------------------------------
Q 018101 148 -------------------------------------------------------------------------------- 147 (360)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (360)
T Consensus 708 Kr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~ 787 (1013)
T KOG2012|consen 708 KRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSA 787 (1013)
T ss_pred CCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchH
Confidence
Q ss_pred --------------------CCCCCCCCCh--hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHH
Q 018101 148 --------------------SGKSFDPDDP--EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAA 205 (360)
Q Consensus 148 --------------------~~~~fd~dd~--~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl 205 (360)
.|+.|+|||+ .||+||+++||+||++|.|+..++..+++|||+||||||||+|+++|+
T Consensus 788 ~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Gl 867 (1013)
T KOG2012|consen 788 AIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGL 867 (1013)
T ss_pred HHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHH
Confidence 2456999875 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCC---cccceeeeecccCceeeeeecccCCCCc-cCCC-ceEEEeCCCCCHHHHHHHHhcCcccccee
Q 018101 206 CALETLKIASGCSK---TLSNYLTYNGVAGLHIKVTEFVKDKDCL-VCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 280 (360)
Q Consensus 206 ~~~E~lKil~~~~~---~l~n~~~~~~~~~~~~~~~~~~~~~~C~-vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~ 280 (360)
+++|++|++.|..+ +-+.|++...+.......+..++...=. .-.+ |+++++.++.||++|++++++++ ++++
T Consensus 868 v~LElyKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~--gl~i 945 (1013)
T KOG2012|consen 868 VCLELYKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQH--GLEI 945 (1013)
T ss_pred HHhhhhhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhc--CceE
Confidence 99999999999543 1123333322211111111111100000 0124 99999999999999999999876 8899
Q ss_pred ceeeeCCcEEEecCCCChhHhhhccCCCchHHhhccc
Q 018101 281 ASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKV 317 (360)
Q Consensus 281 ~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~elv~~g 317 (360)
.||+.|+.+||.++++ .+.+||++++.||++..
T Consensus 946 ~mls~G~~lly~~~~~----k~~erl~~~v~elv~~~ 978 (1013)
T KOG2012|consen 946 TMLSQGVSLLYASFMP----KHAERLPLRVTELVRDV 978 (1013)
T ss_pred EEEeccceeehhhhhh----HHHHhcCCcHHHHHHHH
Confidence 9999999999999865 46679999999998866
No 8
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=4.4e-54 Score=398.91 Aligned_cols=185 Identities=48% Similarity=0.940 Sum_probs=176.8
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCC---CcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPRE 77 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~---~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~ 77 (360)
++||||+||++|+++++++||+++|+++..++. +++.+|+++||+|++|+||+++|+++|++|+
T Consensus 47 ~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~------------- 113 (234)
T cd01484 47 PKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLI------------- 113 (234)
T ss_pred hhhCChHHHHHHHHHHHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------
Confidence 369999999999999999999999999999995 3567899999999999999999999999999
Q ss_pred cCCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCCh
Q 018101 78 ETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDP 157 (360)
Q Consensus 78 ~~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~ 157 (360)
..++|||++|+.|++|++++++|+.|+||+|.+ .|+++++|.||++++|++|||||+||+++.| ||+
T Consensus 114 ~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~--~~~~~~~p~Cti~~~P~~~~hci~~a~~~~~-----------d~~ 180 (234)
T cd01484 114 FLIVPLIESGTEGFKGNAQVILPGMTECIECTL--YPPQKNFPMCTIASMPRLPEHCIEWARMLQW-----------DDP 180 (234)
T ss_pred HcCCCEEEEcccCCceEEEEEcCCCCCCcccCC--CCCCCCCCccccCCCCCCchHHHHHHHHHHh-----------CCH
Confidence 789999999999999999999999999999998 3677899999999999999999999999988 789
Q ss_pred hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHH
Q 018101 158 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 211 (360)
Q Consensus 158 ~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~l 211 (360)
.||+||+++||+||++|||++.+++++++|+||||||||||||||||++++|++
T Consensus 181 ~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 181 EHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999974
No 9
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.96 E-value=6.3e-28 Score=225.31 Aligned_cols=165 Identities=23% Similarity=0.449 Sum_probs=140.0
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
+|||++||++|+++|+++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ +++
T Consensus 73 ~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~-------------~~~ 139 (240)
T TIGR02355 73 ANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCF-------------AAK 139 (240)
T ss_pred hhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHH-------------HcC
Confidence 68999999999999999999999999999998654 6899999999999999999999999999 889
Q ss_pred CcEEEcccCCcceEEEEEe-CCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhH
Q 018101 81 KPMVDGGTEGFKGHARVII-PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 159 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~-p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~ 159 (360)
+|+|.+++.|+.|++.++. +..++||+|..+..+... +.|.
T Consensus 140 ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~~~~~~~--~~~~------------------------------------ 181 (240)
T TIGR02355 140 VPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSRLFGENA--LSCV------------------------------------ 181 (240)
T ss_pred CCEEEEEecccEeEEEEEecCCCCCccccccccCCCCC--CCcc------------------------------------
Confidence 9999999999999998775 446799999875432110 1111
Q ss_pred HHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeeee
Q 018101 160 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVT 238 (360)
Q Consensus 160 l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~~ 238 (360)
..+.++|+++++|+++++|++|+|+|.++++. .++.||..+..+ ..+
T Consensus 182 -------------------------------~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~-~~~ 229 (240)
T TIGR02355 182 -------------------------------EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSF-REM 229 (240)
T ss_pred -------------------------------ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEE-EEE
Confidence 13457889999999999999999999877774 567788877665 577
Q ss_pred ecccCCCCccC
Q 018101 239 EFVKDKDCLVC 249 (360)
Q Consensus 239 ~~~~~~~C~vC 249 (360)
.++++|+|++|
T Consensus 230 ~~~~~~~C~~C 240 (240)
T TIGR02355 230 KLPKNPTCPVC 240 (240)
T ss_pred eccCCccCCCC
Confidence 89999999999
No 10
>PRK07411 hypothetical protein; Validated
Probab=99.95 E-value=5.8e-28 Score=240.28 Aligned_cols=170 Identities=25% Similarity=0.282 Sum_probs=146.7
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++||++|+++|+++||.++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ ..
T Consensus 86 ~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~-------------~~ 152 (390)
T PRK07411 86 TSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACV-------------LL 152 (390)
T ss_pred hHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 368999999999999999999999999999998754 7899999999999999999999999998 88
Q ss_pred CCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhH
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 159 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~ 159 (360)
++|+|.+++.||.||+.++.|+.++||+|+++..|+....|.|..
T Consensus 153 ~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~~----------------------------------- 197 (390)
T PRK07411 153 NKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCAE----------------------------------- 197 (390)
T ss_pred CCCEEEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCcc-----------------------------------
Confidence 999999999999999999988789999999875444444455631
Q ss_pred HHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeeee
Q 018101 160 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVT 238 (360)
Q Consensus 160 l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~~ 238 (360)
.+.++++++++|+++|+|++|+|+|.++++. .++.||+..+.+. .+
T Consensus 198 --------------------------------~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~-~~ 244 (390)
T PRK07411 198 --------------------------------GGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFR-EL 244 (390)
T ss_pred --------------------------------CCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCcee-EE
Confidence 1236788899999999999999999877765 5778888877664 77
Q ss_pred ecccCCCCccCCC
Q 018101 239 EFVKDKDCLVCGP 251 (360)
Q Consensus 239 ~~~~~~~C~vC~~ 251 (360)
.+.++|+|++|..
T Consensus 245 ~~~~~~~c~~i~~ 257 (390)
T PRK07411 245 KLRPNPERPVIEK 257 (390)
T ss_pred eccCCCCCCcccc
Confidence 8889999999764
No 11
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.95 E-value=2.3e-27 Score=235.21 Aligned_cols=170 Identities=26% Similarity=0.455 Sum_probs=145.8
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++||++++++++++||.++|+++...+++.+ .++++++|+||+|+||+++|.++|++|+ +.
T Consensus 183 ~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~-------------~~ 249 (376)
T PRK08762 183 EDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACV-------------KL 249 (376)
T ss_pred hhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 368999999999999999999999999999988655 6788999999999999999999999999 88
Q ss_pred CCcEEEcccCCcceEEEEEeCCC----CCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCC
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGV----TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPD 155 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~----t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~d 155 (360)
++|+|.+|+.|+.|++.++.|+. ++||+|.++..++....|.|..
T Consensus 250 ~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~------------------------------- 298 (376)
T PRK08762 250 GKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAE------------------------------- 298 (376)
T ss_pred CCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCcc-------------------------------
Confidence 99999999999999999999876 8999999864333333344531
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCce
Q 018101 156 DPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLH 234 (360)
Q Consensus 156 d~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~ 234 (360)
.+.++|+++++|+++++|++|+|+|.+.++. .++.||+.+..+
T Consensus 299 ------------------------------------~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~ 342 (376)
T PRK08762 299 ------------------------------------AGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRF 342 (376)
T ss_pred ------------------------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeE
Confidence 2236788999999999999999999877764 677888887665
Q ss_pred eeeeecccCCCCccCCC
Q 018101 235 IKVTEFVKDKDCLVCGP 251 (360)
Q Consensus 235 ~~~~~~~~~~~C~vC~~ 251 (360)
..+.+.++|+|++|+.
T Consensus 343 -~~~~~~~~~~C~~C~~ 358 (376)
T PRK08762 343 -RELRLPPDPHCPVCAP 358 (376)
T ss_pred -EEEeccCCCCCCCCCC
Confidence 4778899999999987
No 12
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.95 E-value=1.7e-27 Score=234.34 Aligned_cols=167 Identities=23% Similarity=0.330 Sum_probs=144.9
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++||++|+++|+++||.++|+++..+++..+ .++++++|+||+|+||+++|.++|++|+ +.
T Consensus 76 ~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~-------------~~ 142 (355)
T PRK05597 76 TAGVGQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAA-------------RL 142 (355)
T ss_pred hhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 369999999999999999999999999999998654 7899999999999999999999999999 88
Q ss_pred CCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhH
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 159 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~ 159 (360)
++|||.+++.|+.||+.++.|+.++||+|+++..|+....+.|+.
T Consensus 143 ~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~----------------------------------- 187 (355)
T PRK05597 143 GIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQ----------------------------------- 187 (355)
T ss_pred CCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCccc-----------------------------------
Confidence 999999999999999999999889999999876444445566641
Q ss_pred HHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeeee
Q 018101 160 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVT 238 (360)
Q Consensus 160 l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~~ 238 (360)
.+.++|+++++|+++++|++|+|+|.++++. .++.||+.++.+ ..+
T Consensus 188 --------------------------------~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~-~~~ 234 (355)
T PRK05597 188 --------------------------------AGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTW-EYI 234 (355)
T ss_pred --------------------------------cCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeE-EEE
Confidence 2347889999999999999999999877775 577888887665 377
Q ss_pred ecccCCCCcc
Q 018101 239 EFVKDKDCLV 248 (360)
Q Consensus 239 ~~~~~~~C~v 248 (360)
.+.++|+|..
T Consensus 235 ~~~~~~~~~~ 244 (355)
T PRK05597 235 PVVGNPAVLE 244 (355)
T ss_pred eccCCCCCcc
Confidence 8888998854
No 13
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.95 E-value=3.3e-27 Score=233.07 Aligned_cols=190 Identities=22% Similarity=0.278 Sum_probs=158.0
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++||++|+++++++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ ..
T Consensus 89 ~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~-------------~~ 155 (370)
T PRK05600 89 ASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE-------------IT 155 (370)
T ss_pred hhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 369999999999999999999999999999998755 7899999999999999999999999999 88
Q ss_pred CCcEEEcccCCcceEEEEEeCCC---CCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCC
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGV---TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD 156 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~---t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd 156 (360)
++|+|.+++.|+.||+.++.|+. ++||+|.++..++....+.|..
T Consensus 156 ~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~-------------------------------- 203 (370)
T PRK05600 156 GTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCAT-------------------------------- 203 (370)
T ss_pred CCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCcc--------------------------------
Confidence 99999999999999999988753 7899999875443333455531
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCcee
Q 018101 157 PEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHI 235 (360)
Q Consensus 157 ~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~ 235 (360)
.+.++|+.+++|+++|+|++|+|+|.++++. .++.||+..+.+
T Consensus 204 -----------------------------------~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~- 247 (370)
T PRK05600 204 -----------------------------------AGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATT- 247 (370)
T ss_pred -----------------------------------CCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEE-
Confidence 3457889999999999999999999877765 578889888766
Q ss_pred eeeecccCCCCccCCC-ceEEEeCCCCCHHHHHHHHhc
Q 018101 236 KVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEE 272 (360)
Q Consensus 236 ~~~~~~~~~~C~vC~~-~~~~~~~~~~Tl~~li~~l~~ 272 (360)
..+++.++|+|++|.. ..... .-.+|..++.+.+.+
T Consensus 248 ~~~~~~~~~~c~~~~~~~~~~~-~~~~~~~el~~~l~~ 284 (370)
T PRK05600 248 RSFRVGADPARPLVTRLRPSYE-AARTDTTSLIDATLN 284 (370)
T ss_pred EEEEecCCCCCCccccccCcch-hcccCHHHHHHHHhc
Confidence 5888999999999876 21211 114688888887754
No 14
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.95 E-value=5.6e-27 Score=219.65 Aligned_cols=163 Identities=21% Similarity=0.413 Sum_probs=139.4
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++||++|+++|+++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ ++
T Consensus 80 ~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~-------------~~ 146 (245)
T PRK05690 80 DATIGQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACF-------------AA 146 (245)
T ss_pred hhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHH-------------Hh
Confidence 369999999999999999999999999999998755 6789999999999999999999999999 88
Q ss_pred CCcEEEcccCCcceEEEEEeCCC-CCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChh
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 158 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~-t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~ 158 (360)
++|+|.+++.|+.|++.++.|+. ++||+|.++..++.. ..|.
T Consensus 147 ~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~~~~~~--~~~~----------------------------------- 189 (245)
T PRK05690 147 KKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGENA--LTCV----------------------------------- 189 (245)
T ss_pred CCEEEEeeeccCCceEEEEecCCCCceeeeccCCCCCCC--CCcc-----------------------------------
Confidence 99999999999999999999875 799999976432211 1221
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeee
Q 018101 159 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKV 237 (360)
Q Consensus 159 ~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~ 237 (360)
-.+.++|+++++|+++++|++|+|+|.++++. .++.||..+..+ ..
T Consensus 190 --------------------------------~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~-~~ 236 (245)
T PRK05690 190 --------------------------------EAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQF-RE 236 (245)
T ss_pred --------------------------------cCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEE-EE
Confidence 12457899999999999999999999887775 567788887666 47
Q ss_pred eecccCCCC
Q 018101 238 TEFVKDKDC 246 (360)
Q Consensus 238 ~~~~~~~~C 246 (360)
+.+.++|+|
T Consensus 237 ~~~~~~~~C 245 (245)
T PRK05690 237 MKLKRDPGC 245 (245)
T ss_pred EEcCCCcCC
Confidence 788899988
No 15
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.94 E-value=2e-26 Score=229.57 Aligned_cols=167 Identities=23% Similarity=0.328 Sum_probs=142.1
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++||++|+++|+++||+++|+++..+++..+ .++++++|+||+|+||+++|.++|++|+ ..
T Consensus 90 ~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~-------------~~ 156 (392)
T PRK07878 90 QSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAV-------------LA 156 (392)
T ss_pred hhcCCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 478999999999999999999999999999998755 7899999999999999999999999999 88
Q ss_pred CCcEEEcccCCcceEEEEEeC----CCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCC
Q 018101 80 IKPMVDGGTEGFKGHARVIIP----GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPD 155 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p----~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~d 155 (360)
++|||.+++.|+.||++++.+ +.++||+|.++..++....+.|.-
T Consensus 157 ~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~------------------------------- 205 (392)
T PRK07878 157 GKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAE------------------------------- 205 (392)
T ss_pred CCCEEEEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCcc-------------------------------
Confidence 999999999999999998874 378999999864333334455531
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCce
Q 018101 156 DPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLH 234 (360)
Q Consensus 156 d~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~ 234 (360)
...++++++++|+++|+|++|+|+|.++++. .++.||+....+
T Consensus 206 ------------------------------------~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~ 249 (392)
T PRK07878 206 ------------------------------------GGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTY 249 (392)
T ss_pred ------------------------------------CCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCce
Confidence 2347888999999999999999999877764 677889887665
Q ss_pred eeeeecccCCCCcc
Q 018101 235 IKVTEFVKDKDCLV 248 (360)
Q Consensus 235 ~~~~~~~~~~~C~v 248 (360)
. .+.+.++|+|+.
T Consensus 250 ~-~~~~~~~~~C~~ 262 (392)
T PRK07878 250 R-TIKIRKDPSTPK 262 (392)
T ss_pred e-eEeeccCCCCCc
Confidence 4 678889999973
No 16
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.94 E-value=3.1e-26 Score=223.82 Aligned_cols=167 Identities=27% Similarity=0.413 Sum_probs=139.0
Q ss_pred CCc--CchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDV--GKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dI--Gk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+|+ |++||++|+++++++||+++|+++..+++..+ .++++++|+||+|+||+++|.++|++|+ +
T Consensus 73 ~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~-------------~ 139 (338)
T PRK12475 73 EDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ-------------K 139 (338)
T ss_pred HHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH-------------H
Confidence 455 58999999999999999999999999887544 7789999999999999999999999998 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChh
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 158 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~ 158 (360)
.++|||.+|+.|+.|++.++.|+.|+||+|+++..|... +.|.
T Consensus 140 ~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~~--~~c~----------------------------------- 182 (338)
T PRK12475 140 YNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVGG--ATCD----------------------------------- 182 (338)
T ss_pred cCCCEEEEEecccEEEEEEECCCCCCCHHHhcCCCCCCC--CCCc-----------------------------------
Confidence 899999999999999999999999999999986433211 2231
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeee
Q 018101 159 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKV 237 (360)
Q Consensus 159 ~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~ 237 (360)
..+.++|+++++|+++++|++|+|+|..+.+. .++.||..+..+. .
T Consensus 183 --------------------------------~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~-~ 229 (338)
T PRK12475 183 --------------------------------TAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNM-S 229 (338)
T ss_pred --------------------------------cCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEE-E
Confidence 12345677899999999999999999877775 4567887765543 5
Q ss_pred eecc--cCCCCccCCC
Q 018101 238 TEFV--KDKDCLVCGP 251 (360)
Q Consensus 238 ~~~~--~~~~C~vC~~ 251 (360)
+.+. |+|+||+||.
T Consensus 230 ~~~~~~k~p~Cp~Cg~ 245 (338)
T PRK12475 230 IKVNKQKKDTCPSCGL 245 (338)
T ss_pred EEeccCCCCCCCcCCC
Confidence 5664 4999999996
No 17
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=219.05 Aligned_cols=170 Identities=25% Similarity=0.423 Sum_probs=145.6
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
+.++|++||+.|+.+++++||+++|..|...+...+ .+.+++||+|+||+||+.+|+.+|+.|+ ..
T Consensus 114 ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CV-------------lL 180 (427)
T KOG2017|consen 114 EARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCV-------------LL 180 (427)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHH-------------Hc
Confidence 357999999999999999999999999999998766 8999999999999999999999999999 78
Q ss_pred CCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhH
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 159 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~ 159 (360)
++|+|.|+..+|.||+.++.-..+|||+|+++..||......|.-
T Consensus 181 gkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~d----------------------------------- 225 (427)
T KOG2017|consen 181 GKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCAD----------------------------------- 225 (427)
T ss_pred CCcccccccccccceeEEeecCCCceeeecCCCCcChHHhccccc-----------------------------------
Confidence 999999999999999999877789999999986555444444521
Q ss_pred HHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeeee
Q 018101 160 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVT 238 (360)
Q Consensus 160 l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~~ 238 (360)
- || +.+.+++||+|||+|++|++.|.++.+. ..+.|++..+.+ ..+
T Consensus 226 --------------g-----------GV-------lGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~-r~i 272 (427)
T KOG2017|consen 226 --------------G-----------GV-------LGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHF-RTI 272 (427)
T ss_pred --------------C-----------ce-------eecchhhhhHHHHHHHHHHHHccCccCCcceEEEeccccee-EEE
Confidence 1 22 4566799999999999999999988887 456789888755 466
Q ss_pred ec-ccCCCCccCCC
Q 018101 239 EF-VKDKDCLVCGP 251 (360)
Q Consensus 239 ~~-~~~~~C~vC~~ 251 (360)
.+ .+.++|.+||.
T Consensus 273 rlR~r~~~C~~Cg~ 286 (427)
T KOG2017|consen 273 RLRSRRPKCAVCGK 286 (427)
T ss_pred EeccCCCCCcccCC
Confidence 65 47889999996
No 18
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.94 E-value=8.7e-26 Score=220.72 Aligned_cols=167 Identities=25% Similarity=0.375 Sum_probs=139.7
Q ss_pred CCc--CchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDV--GKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dI--Gk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+|| |++|+++|+++++++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|+ +
T Consensus 73 ~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~-------------~ 139 (339)
T PRK07688 73 SDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ-------------K 139 (339)
T ss_pred HHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH-------------H
Confidence 578 56999999999999999999999999998765 7889999999999999999999999999 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChh
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 158 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~ 158 (360)
.++|||.+++.|+.|++.++.|+.++||+|+++..|+.. +.|.-
T Consensus 140 ~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~~--~~c~~---------------------------------- 183 (339)
T PRK07688 140 YGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQSIPLGG--ATCDT---------------------------------- 183 (339)
T ss_pred hCCCEEEEeeeeeeeEEEEECCCCCCCeEeecCCCCCCC--CCCcc----------------------------------
Confidence 899999999999999999999999999999986533221 33420
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeee
Q 018101 159 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKV 237 (360)
Q Consensus 159 ~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~ 237 (360)
.+.++|+++++|+++++|++|+|+|.++.+. ..+.||..+..+. .
T Consensus 184 ---------------------------------~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~-~ 229 (339)
T PRK07688 184 ---------------------------------AGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYS-C 229 (339)
T ss_pred ---------------------------------CCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEE-E
Confidence 1346778899999999999999999877765 4567887776543 4
Q ss_pred ee--cccCCCCccCCC
Q 018101 238 TE--FVKDKDCLVCGP 251 (360)
Q Consensus 238 ~~--~~~~~~C~vC~~ 251 (360)
+. ..++|+|++||.
T Consensus 230 ~~~~~~~~~~Cp~Cg~ 245 (339)
T PRK07688 230 MNVQKLKKDNCPSCGE 245 (339)
T ss_pred EEecCCCCCCCCCCCC
Confidence 43 346799999997
No 19
>PRK08223 hypothetical protein; Validated
Probab=99.93 E-value=1.9e-25 Score=211.99 Aligned_cols=170 Identities=21% Similarity=0.231 Sum_probs=138.3
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCH--HHHHHHHHHHhhchhcccCCCccc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPRE 77 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~--~aR~~iN~~c~~~~~~~~~~~~~~ 77 (360)
++|||++||++|+++++++||+++|+++..++++.+ .+|++++|+||||+||+ ++|.++|++|+
T Consensus 75 ~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~------------- 141 (287)
T PRK08223 75 MSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQ------------- 141 (287)
T ss_pred hhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH-------------
Confidence 368999999999999999999999999999998766 78999999999999996 89999999999
Q ss_pred cCCCcEEEcccCCcceEEEEEeCCCCCccccccCC---CCCC--------CCCCcccccCCCCCchhhHHHhhhhhhhhh
Q 018101 78 ETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL---FPPQ--------VKFPLCTLAETPRTAAHCIEYAHLIKWDEV 146 (360)
Q Consensus 78 ~~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~---~~~~--------~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~ 146 (360)
.+++|+|.+++.|+.||+.++.|+ ++||+|.++. .|++ ...|.|.-+.+...+.-
T Consensus 142 ~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~------------- 207 (287)
T PRK08223 142 QRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSR------------- 207 (287)
T ss_pred HcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccc-------------
Confidence 889999999999999999999986 8999999875 2321 34567764433210000
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcc--cce
Q 018101 147 HSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL--SNY 224 (360)
Q Consensus 147 ~~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l--~n~ 224 (360)
+| +-+.-.|.+++++.++|++||+|++|+|+|.++.+ ..+
T Consensus 208 -----~~---------------------------------~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~ 249 (287)
T PRK08223 208 -----VD---------------------------------LENRTGPSTGLACQLCAGVVATEVLKILLGRGRVYAAPWF 249 (287)
T ss_pred -----cc---------------------------------cccccCCCccchHHHHHHHHHHHHHHHHhCCCCcCCCCeE
Confidence 00 01123688899999999999999999999998875 367
Q ss_pred eeeecccCcee
Q 018101 225 LTYNGVAGLHI 235 (360)
Q Consensus 225 ~~~~~~~~~~~ 235 (360)
+.||+..+.+.
T Consensus 250 ~~~d~~~~~~~ 260 (287)
T PRK08223 250 HQFDAYRSRYV 260 (287)
T ss_pred EEEEcCCceEE
Confidence 88888776543
No 20
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.93 E-value=1.9e-25 Score=216.33 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=143.5
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHH--HHHHHHhhchhcccCCCcccc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARS--YINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~--~iN~~c~~~~~~~~~~~~~~~ 78 (360)
++|||++|+++|++++.++||+++|+.+ .++++++|+|++|+||+.+|. |+|++|+ +
T Consensus 118 ~~diG~~K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~-------------~ 176 (318)
T TIGR03603 118 KEFILKKDIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSK-------------E 176 (318)
T ss_pred hhhcCcHHHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHH-------------H
Confidence 4799999999999999999999999864 367899999999999999995 5999999 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChh
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 158 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~ 158 (360)
.++|||.|+..|+.||+.++.|+.|+||+|+++........+ .||. |.++
T Consensus 177 ~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~-----~~~~----------------------~~~~--- 226 (318)
T TIGR03603 177 TKKPNTIAFIDGPFVFITCTLPPETGCFECLERRLLSRLDWR-----LYGV----------------------FTEY--- 226 (318)
T ss_pred HCCCEEEEEEccCEEEEEEEeCCCCCcHHHccchhhcccccc-----cccc----------------------cccc---
Confidence 899999999999999999999989999999975211100000 0000 0000
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCc-c-cceeeeecccCceee
Q 018101 159 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-L-SNYLTYNGVAGLHIK 236 (360)
Q Consensus 159 ~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~-l-~n~~~~~~~~~~~~~ 236 (360)
.++. ... ....+.++|+++++|+++++|++ +++|.+.+ + +..+.+|..+..+ .
T Consensus 227 ----------------~~~~-----~~~--~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~t~~~-~ 281 (318)
T TIGR03603 227 ----------------LVKA-----ENN--VSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLPTLEI-Q 281 (318)
T ss_pred ----------------cCCC-----CCC--CccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECCCCeE-E
Confidence 0000 000 00124577889999999999999 99987664 3 5677888887665 4
Q ss_pred eeecccCCCCccCCCceEEEeC-CCCCHHHHHHHHh
Q 018101 237 VTEFVKDKDCLVCGPGVLIELD-TSVTLEKFINLLE 271 (360)
Q Consensus 237 ~~~~~~~~~C~vC~~~~~~~~~-~~~Tl~~li~~l~ 271 (360)
.+.+.|+|+|++||...++... -.++-+++++.+.
T Consensus 282 ~~~l~k~p~Cp~CG~~~~~~~~~~~~~~~~~~~~~~ 317 (318)
T TIGR03603 282 FQDILKQSCCSTCGTFNKIKFEEQNISTRNIVKELL 317 (318)
T ss_pred EEecCCCCCCcccCCccccchhhhhhhHHHHHHHHh
Confidence 7788999999999983333333 2466677777653
No 21
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.92 E-value=2.3e-24 Score=199.90 Aligned_cols=152 Identities=30% Similarity=0.503 Sum_probs=129.8
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
+|||++||++++++|+++||+++|+++..++++.+ .++++++|+||+|+|++++|.++|++|+ +++
T Consensus 70 ~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~-------------~~~ 136 (228)
T cd00757 70 ADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACV-------------KLG 136 (228)
T ss_pred hhCCChHHHHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHH-------------HcC
Confidence 58999999999999999999999999999986544 6789999999999999999999999999 889
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhHH
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHM 160 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~l 160 (360)
+|+|++|+.|+.|++.++.|+.++||.|.+...+.. ..+.|
T Consensus 137 ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~~~~-~~~~~-------------------------------------- 177 (228)
T cd00757 137 KPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPP-GVPSC-------------------------------------- 177 (228)
T ss_pred CCEEEEEeccCEEEEEEECCCCCCCccccCCCCCCC-CCCcc--------------------------------------
Confidence 999999999999999999999999999987643211 11111
Q ss_pred HHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcc-cceeeeecccCce
Q 018101 161 QWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYNGVAGLH 234 (360)
Q Consensus 161 ~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l-~n~~~~~~~~~~~ 234 (360)
...|+++|+++++|+++++|++|+|+|..+++ .+++.||..+..+
T Consensus 178 -----------------------------~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~ 223 (228)
T cd00757 178 -----------------------------AEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSF 223 (228)
T ss_pred -----------------------------ccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEE
Confidence 12477899999999999999999999987665 4678888776544
No 22
>PRK08328 hypothetical protein; Provisional
Probab=99.92 E-value=3.6e-24 Score=199.01 Aligned_cols=149 Identities=24% Similarity=0.340 Sum_probs=127.3
Q ss_pred CCCcCc-hHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 1 MEDVGK-PKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 1 ~~dIGk-~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
++|||+ +|+++|+++++++||+++|+++..++.+.+ .++++++|+||+|+||+++|.++|++|+ +
T Consensus 75 ~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~-------------~ 141 (231)
T PRK08328 75 EEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAH-------------K 141 (231)
T ss_pred hhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------H
Confidence 368999 699999999999999999999999987655 6799999999999999999999999999 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChh
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 158 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~ 158 (360)
+++|+|++|+.|+.|+++++.|+.|+||+|.++..+ +.|.
T Consensus 142 ~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~~~-----~~~~----------------------------------- 181 (231)
T PRK08328 142 KGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPKVK-----KKKG----------------------------------- 181 (231)
T ss_pred cCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCCCC-----Cccc-----------------------------------
Confidence 899999999999999999999999999999875321 1110
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCce
Q 018101 159 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLH 234 (360)
Q Consensus 159 ~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~ 234 (360)
-.|.++|+++++|+++++|++|+|+|.++++. ..+.+|..+..+
T Consensus 182 --------------------------------~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~ 226 (231)
T PRK08328 182 --------------------------------KFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVF 226 (231)
T ss_pred --------------------------------cCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEE
Confidence 02447899999999999999999999877775 456778766543
No 23
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.91 E-value=2.5e-24 Score=196.22 Aligned_cols=99 Identities=29% Similarity=0.482 Sum_probs=92.7
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++||++++++++++||+++|+++..++.+.+ .++++++|+||+|+||+++|.++|++|+ ++
T Consensus 69 ~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~-------------~~ 135 (202)
T TIGR02356 69 EEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACV-------------AL 135 (202)
T ss_pred hhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 468999999999999999999999999999997655 6789999999999999999999999999 88
Q ss_pred CCcEEEcccCCcceEEEEEeCC-CCCccccccCC
Q 018101 80 IKPMVDGGTEGFKGHARVIIPG-VTPCFECTIWL 112 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~-~t~Cy~C~~~~ 112 (360)
++|||++|+.|+.|+++++.|+ .++||+|.++.
T Consensus 136 ~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~ 169 (202)
T TIGR02356 136 GTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPD 169 (202)
T ss_pred CCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCC
Confidence 9999999999999999999998 79999999864
No 24
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.90 E-value=4.4e-23 Score=194.20 Aligned_cols=170 Identities=31% Similarity=0.566 Sum_probs=139.8
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++|+++|++.++++||.++++++..+++..+ .++++++|+|++|+||+++|.++|+.|+ ..
T Consensus 78 ~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~-------------~~ 144 (254)
T COG0476 78 EADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACV-------------KL 144 (254)
T ss_pred ccccCCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHH-------------Hh
Confidence 479999999999999999999999999999998866 6999999999999999999999999999 78
Q ss_pred CCcEEEcccCCcceEEEEEeCC-CCCccccccCCCCCCCCCC-cccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCCh
Q 018101 80 IKPMVDGGTEGFKGHARVIIPG-VTPCFECTIWLFPPQVKFP-LCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDP 157 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~-~t~Cy~C~~~~~~~~~~~p-~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~ 157 (360)
++||+++|+.|+.|++++|.|+ .++||+|.++..|+....+ .|.
T Consensus 145 ~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~---------------------------------- 190 (254)
T COG0476 145 GIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCD---------------------------------- 190 (254)
T ss_pred CCCeEeeeeccceEEEEEEecCCCCCcccccCCCCCCccccccccc----------------------------------
Confidence 8999999999999999999999 5999999998655433222 132
Q ss_pred hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCC-Cc-ccceeeeecccCcee
Q 018101 158 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS-KT-LSNYLTYNGVAGLHI 235 (360)
Q Consensus 158 ~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~-~~-l~n~~~~~~~~~~~~ 235 (360)
..| -+.++..+++.+++.|++|+++|.+ .+ ....+.++.......
T Consensus 191 ---------------~~g------------------v~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~ 237 (254)
T COG0476 191 ---------------EAG------------------VLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERF 237 (254)
T ss_pred ---------------cCC------------------ccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccc
Confidence 111 1345557899999999999999997 44 456777777766333
Q ss_pred eeeecccCCC-CccCC
Q 018101 236 KVTEFVKDKD-CLVCG 250 (360)
Q Consensus 236 ~~~~~~~~~~-C~vC~ 250 (360)
......+++. |++|+
T Consensus 238 ~~~~~~~~~~~~~~c~ 253 (254)
T COG0476 238 RTLKLRRRPISCPVCG 253 (254)
T ss_pred hhhhcccCCCCCCcCC
Confidence 3555556665 99997
No 25
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.88 E-value=2.5e-22 Score=191.27 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=141.2
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++|||++||++++++|+++||.++|+++..++ +.+++++||+||++.|++++|.++|++|+ +++
T Consensus 67 ~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~-------------~~~ 130 (286)
T cd01491 67 EEDIGKNRAEASQARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFCH-------------SPG 130 (286)
T ss_pred hHHhCHHHHHHHHHHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHHH-------------HcC
Confidence 47999999999999999999999999998763 46889999999999999999999999999 889
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhh-------hhhhhhc------
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHL-------IKWDEVH------ 147 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~-------~~w~~~~------ 147 (360)
+|+|.+++.|+.|++++. .++||.|.-+...++.+.+.|+|.+-+....||+.-.++ +.+.+..
T Consensus 131 ipfI~a~~~G~~G~vf~d---fg~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN 207 (286)
T cd01491 131 IKFISADTRGLFGSIFCD---FGDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELN 207 (286)
T ss_pred CEEEEEeccccEEEEEec---CCCeEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhC
Confidence 999999999999999884 358888874333345677888888777777787644332 1121111
Q ss_pred ----------CCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccC
Q 018101 148 ----------SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 217 (360)
Q Consensus 148 ----------~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~ 217 (360)
+|..|.-.|.. .|+ ....-|++..+= ++|.+|++||++|+|++|.+++.
T Consensus 208 ~~~~~~v~~~~~~~f~i~d~~--------------~~~-----~y~~gG~~~qvK--~~~~~~~~g~~~~q~~~~~~~~~ 266 (286)
T cd01491 208 GCEPRKIKVKGPYTFSIGDTS--------------SFS-----EYIRGGIVTQVK--LSPMAAFFGGLAAQEVLKACSGK 266 (286)
T ss_pred CCccEEEEECCCCeEEECcCc--------------CcC-----ccccCcEEEEEe--cccHHHHhhhHHHHHHHHHcCCC
Confidence 11111111100 000 001112222221 78999999999999999999999
Q ss_pred CCcccceeeeeccc
Q 018101 218 SKTLSNYLTYNGVA 231 (360)
Q Consensus 218 ~~~l~n~~~~~~~~ 231 (360)
..|+..++.||...
T Consensus 267 ~~p~~q~~~~~~~~ 280 (286)
T cd01491 267 FTPLKQWLYFDALE 280 (286)
T ss_pred CCceeeEEEecHHH
Confidence 99999888888654
No 26
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=99.85 E-value=1.3e-20 Score=171.17 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=111.5
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIK 81 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~i 81 (360)
+||||+||++++++|+++||+++|+++...+.+.+.+|+++||+||+|.|++++|.++|++|+ +.++
T Consensus 70 ~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~-------------~~~i 136 (197)
T cd01492 70 EDLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCR-------------KLGV 136 (197)
T ss_pred HHcCchHHHHHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------HcCC
Confidence 689999999999999999999999999999987678899999999999999999999999999 8899
Q ss_pred cEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhHHH
Q 018101 82 PMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQ 161 (360)
Q Consensus 82 PlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~l~ 161 (360)
|+|.+|+.|+.|++++..
T Consensus 137 p~i~~~~~G~~G~v~~d~-------------------------------------------------------------- 154 (197)
T cd01492 137 KFYATGVHGLFGFVFADL-------------------------------------------------------------- 154 (197)
T ss_pred CEEEEEecCCEEEEEEec--------------------------------------------------------------
Confidence 999999999999976421
Q ss_pred HHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccC
Q 018101 162 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAG 232 (360)
Q Consensus 162 fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~ 232 (360)
++|+++++|+++++|++|+++|.+.++.+++.+|+.++
T Consensus 155 ---------------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~ 192 (197)
T cd01492 155 ---------------------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETS 192 (197)
T ss_pred ---------------------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCC
Confidence 24566899999999999999998888888888887754
No 27
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=99.81 E-value=1.5e-19 Score=164.35 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=77.2
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCC---CcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~---~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+|+|++||++++++|+++||+++|+++..++. +...+|+++||+||+|.|+.++|.++|++|+ +
T Consensus 70 ~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~-------------~ 136 (198)
T cd01485 70 SNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCR-------------K 136 (198)
T ss_pred hhcCchHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHH-------------H
Confidence 68999999999999999999999999998885 2347899999999999999999999999999 8
Q ss_pred CCCcEEEcccCCcceEEEE
Q 018101 79 TIKPMVDGGTEGFKGHARV 97 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~v 97 (360)
+++|+|.+|+.|+.|++++
T Consensus 137 ~~ip~i~~~~~G~~G~v~~ 155 (198)
T cd01485 137 HHIPFISCATYGLIGYAFF 155 (198)
T ss_pred cCCCEEEEEeecCEEEEEE
Confidence 8999999999999999874
No 28
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.6e-19 Score=163.99 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=146.9
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIK 81 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~i 81 (360)
+++|+.||++..++++.+||.|+|.+..+++++.+.+||.+||+||..--+.+++..+|.+|+ +.++
T Consensus 80 ~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icr-------------k~~i 146 (331)
T KOG2014|consen 80 SSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICR-------------KLNI 146 (331)
T ss_pred hhhchHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHH-------------hcCc
Confidence 579999999999999999999999999999999999999999999998888999999999999 8899
Q ss_pred cEEEcccCCcceEEEEEeCCCCCccc------cccC-C---CCCCCCCCcccccCCCCCchhh-HHHhh-hhhhhhhcCC
Q 018101 82 PMVDGGTEGFKGHARVIIPGVTPCFE------CTIW-L---FPPQVKFPLCTLAETPRTAAHC-IEYAH-LIKWDEVHSG 149 (360)
Q Consensus 82 PlI~~gt~G~~G~v~vi~p~~t~Cy~------C~~~-~---~~~~~~~p~Cti~~~P~~~ehc-I~wa~-~~~w~~~~~~ 149 (360)
+|+.+++.|+.|.+++.+-++. +.+ |... . .....+.++-..-+||+.-|-+ ..|.+ ...-.+...+
T Consensus 147 ~F~a~d~~g~~Gy~F~dL~~h~-y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~ 225 (331)
T KOG2014|consen 147 AFYAGDCFGLCGYAFADLQEHK-YLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKK 225 (331)
T ss_pred eEEeccccceeeeeeeehhhhh-hhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCc
Confidence 9999999999999998764321 111 1000 0 0000011221223455544432 33420 0000000000
Q ss_pred -----------CCC---CCC--ChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHH
Q 018101 150 -----------KSF---DPD--DPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 213 (360)
Q Consensus 150 -----------~~f---d~d--d~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKi 213 (360)
... |+. ..+.++.+...-|.....-++.+..+ ....+.+.+.++|++|+|||++++|++|.
T Consensus 226 ~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~---~~f~~~~~~ef~Pv~AvVGGivaQevIk~ 302 (331)
T KOG2014|consen 226 LYFLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDEL---LEFLSLIFTEFAPVCAVVGGILAQEVIKA 302 (331)
T ss_pred ceehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchH---HHHHHhcccccCchhhhhhhHhHHHHHHH
Confidence 011 111 12345555554444433222322221 14567788999999999999999999999
Q ss_pred HccCCCcccceeeeecccCce
Q 018101 214 ASGCSKTLSNYLTYNGVAGLH 234 (360)
Q Consensus 214 l~~~~~~l~n~~~~~~~~~~~ 234 (360)
|++...|++||++|||.++..
T Consensus 303 isk~~~Pl~Nff~fdg~~g~g 323 (331)
T KOG2014|consen 303 ISKKGPPLNNFFIFDGETGKG 323 (331)
T ss_pred hhcCCCcccceEEeecccCce
Confidence 999999999999999987754
No 29
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.78 E-value=2.4e-18 Score=157.99 Aligned_cols=88 Identities=22% Similarity=0.330 Sum_probs=78.8
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++|+++|+++++++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|+.|+ ..
T Consensus 75 ~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~-------------~~ 141 (212)
T PRK08644 75 ISQIGMPKVEALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVL-------------EH 141 (212)
T ss_pred hhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH-------------Hh
Confidence 368999999999999999999999999999998765 5899999999999999999999999998 66
Q ss_pred -CCcEEEcccCCcceEEEEEeCC
Q 018101 80 -IKPMVDGGTEGFKGHARVIIPG 101 (360)
Q Consensus 80 -~iPlI~~gt~G~~G~v~vi~p~ 101 (360)
++|+|.++..|..|++..+.|.
T Consensus 142 ~~~p~I~~~~~~~~~~~~~~~~~ 164 (212)
T PRK08644 142 PGKKLVAASGMAGYGDSNSIKTR 164 (212)
T ss_pred CCCCEEEeehhhccCCceEEEec
Confidence 8999998777777887777664
No 30
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.77 E-value=2.8e-19 Score=134.53 Aligned_cols=67 Identities=40% Similarity=0.680 Sum_probs=56.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccC
Q 018101 151 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 217 (360)
Q Consensus 151 ~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~ 217 (360)
+||+||+.|++||+++||+||++|||+..+++.+++++|+|+|+++||+|+++|++++|++|+++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999899999999999999999999999999999999999874
No 31
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.75 E-value=7.8e-18 Score=150.06 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=85.4
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
+|||++|+++++++++++||.++++++..++++.+ .++++++|+||+|+||+++|.++++.|.. ..+
T Consensus 47 ~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~------------~~~ 114 (174)
T cd01487 47 SQIGEPKVEALKENLREINPFVKIEAINIKIDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLG------------NKN 114 (174)
T ss_pred hhCCChHHHHHHHHHHHHCCCCEEEEEEeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH------------HCC
Confidence 58999999999999999999999999999998755 68999999999999999999988888771 348
Q ss_pred CcEEEcccCCcceEEEEEeCCC--CCccccc
Q 018101 81 KPMVDGGTEGFKGHARVIIPGV--TPCFECT 109 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~--t~Cy~C~ 109 (360)
+|||.++..|+.|++..+.|+. .+||+|.
T Consensus 115 ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 115 KPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred CCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 9999999999999999887754 4699997
No 32
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.74 E-value=2.1e-17 Score=170.38 Aligned_cols=94 Identities=24% Similarity=0.342 Sum_probs=81.9
Q ss_pred CCc---CchHHHHHHHHHHhhCCCceEEEEeccC-------CCc----------c-hhhccCCcEEEEcCCCHHHHHHHH
Q 018101 2 EDV---GKPKAEVAAKRVMERVSGVNIVPHFCRI-------EDK----------D-ISFYNDFNIIVLGLDSIEARSYIN 60 (360)
Q Consensus 2 ~dI---Gk~Ka~vaa~~l~~~Np~v~I~~~~~~i-------~~~----------~-~~f~~~~DvVi~a~Dn~~aR~~iN 60 (360)
+|+ |++||++|+++|+++||+++|+++..+| ++. + .++++++|+|++|+||+++|..+|
T Consensus 387 ~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n 466 (664)
T TIGR01381 387 EDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPT 466 (664)
T ss_pred hhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHH
Confidence 567 9999999999999999999999999885 321 2 568999999999999999999999
Q ss_pred HHHhhchhcccCCCccccCCCcEEEcccCCcceEEEEEe------------------CCCCCccccc
Q 018101 61 AVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII------------------PGVTPCFECT 109 (360)
Q Consensus 61 ~~c~~~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~------------------p~~t~Cy~C~ 109 (360)
.+|. .+++|+|+++ .||.|++.+.. +...+||.|.
T Consensus 467 ~~c~-------------~~~kplI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~ 519 (664)
T TIGR01381 467 VLCS-------------RHKKIAISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCN 519 (664)
T ss_pred HHHH-------------HhCCCEEEEE-eccceEEEEEecccccccccccccccccCCCCCCccccC
Confidence 9999 8899999996 89999987761 1257899998
No 33
>PRK14852 hypothetical protein; Provisional
Probab=99.74 E-value=1.4e-17 Score=178.61 Aligned_cols=163 Identities=17% Similarity=0.265 Sum_probs=124.3
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCH--HHHHHHHHHHhhchhcccCCCccc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPRE 77 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~--~aR~~iN~~c~~~~~~~~~~~~~~ 77 (360)
.+|||++||++++++++++||.++|+++...+++.+ ++|++++|+||+|+|++ ++|+++++.|+
T Consensus 380 ~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~------------- 446 (989)
T PRK14852 380 IASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL------------- 446 (989)
T ss_pred hhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH-------------
Confidence 368999999999999999999999999999998765 88999999999999985 67899999998
Q ss_pred cCCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhh-HHHhhhhhhhhhcCCCCCCCCC
Q 018101 78 ETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHC-IEYAHLIKWDEVHSGKSFDPDD 156 (360)
Q Consensus 78 ~~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehc-I~wa~~~~w~~~~~~~~fd~dd 156 (360)
+.+||+|.+|+.|+.|++.+|.|+ +.||+|.++..+. . | ++|- +.+. +.. .+.
T Consensus 447 ~~~IP~I~ag~~G~~g~v~v~~p~-~~~~~~~f~~~~~-~--p----------~~~~~~~~~-----------l~~-~p~ 500 (989)
T PRK14852 447 ELGIPVITAGPLGYSCALLVFMPG-GMNFDSYFGIDDD-T--P----------PMEGYLRFG-----------MGL-APR 500 (989)
T ss_pred HcCCCEEEeeccccCeeEEEEcCC-CCCHHHhCCCCCC-C--c----------hHhhhhhhh-----------ccC-Ccc
Confidence 889999999999999999999986 6999999874321 1 1 1121 1100 000 011
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCC
Q 018101 157 PEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 219 (360)
Q Consensus 157 ~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~ 219 (360)
+.|+.++ ..+ . ..+...--|++++-+.+-||+++.|++|++.|.++
T Consensus 501 ~~~~~~~-~~~----------~------~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~ 546 (989)
T PRK14852 501 PAHLGYM-DRR----------F------VSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRG 546 (989)
T ss_pred hhhhccc-Ccc----------c------ccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCc
Confidence 2233222 110 0 12333567999999999999999999999999865
No 34
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.72 E-value=1e-17 Score=155.28 Aligned_cols=171 Identities=23% Similarity=0.396 Sum_probs=130.4
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCc-c-hhh---------c--cCCcEEEEcCCCHHHHHHHHHHHhhch
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-D-ISF---------Y--NDFNIIVLGLDSIEARSYINAVACSFL 67 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~-~-~~f---------~--~~~DvVi~a~Dn~~aR~~iN~~c~~~~ 67 (360)
++..|.+|+++|...|..+||+|.|+.|+-+|+.. + +.| . +..|+|+.|+||++||..+|.+|-
T Consensus 129 P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN--- 205 (422)
T KOG2336|consen 129 PDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN--- 205 (422)
T ss_pred cccccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH---
Confidence 35689999999999999999999999999998741 1 222 2 238999999999999999999998
Q ss_pred hcccCCCccccCCCcEEEcccC--CcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhh
Q 018101 68 EYETDDKPREETIKPMVDGGTE--GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDE 145 (360)
Q Consensus 68 ~~~~~~~~~~~~~iPlI~~gt~--G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~ 145 (360)
+.+.-|.++|.. ...|+++.|.|+.|+||.|..+.. ...
T Consensus 206 ----------E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlV-VAs---------------------------- 246 (422)
T KOG2336|consen 206 ----------ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLV-VAS---------------------------- 246 (422)
T ss_pred ----------HhhhHHHHccCccccccceeEEecCCccceecccCcee-eec----------------------------
Confidence 778899999986 467999999999999999975421 000
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCccccee
Q 018101 146 VHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYL 225 (360)
Q Consensus 146 ~~~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~ 225 (360)
||...+. +-.|+. ..++.||.+++||+.++-.+|+|...++ .+.|+
T Consensus 247 -----------------------------~IDErTL-KReGVC---AASLPTTMgvvAG~LVqN~LK~LLNFGe-VS~Yl 292 (422)
T KOG2336|consen 247 -----------------------------GIDERTL-KREGVC---AASLPTTMGVVAGFLVQNSLKFLLNFGE-VSPYL 292 (422)
T ss_pred -----------------------------Ccchhhh-hhccee---eecCcchHHHHHHHHHHHHHHHHhhccc-cchhh
Confidence 2211110 112333 2457799999999999999999998765 45677
Q ss_pred eeecccCceeeeeecccCCCCcc
Q 018101 226 TYNGVAGLHIKVTEFVKDKDCLV 248 (360)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~C~v 248 (360)
-|+...-.+ .+.++.|||.|-.
T Consensus 293 GYNal~DFF-P~msmkPNPqCdd 314 (422)
T KOG2336|consen 293 GYNALSDFF-PTMSMKPNPQCDD 314 (422)
T ss_pred cchhHHhhC-ccccCCCCCCCCc
Confidence 777655443 3667889998874
No 35
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.72 E-value=8.6e-17 Score=175.52 Aligned_cols=213 Identities=18% Similarity=0.168 Sum_probs=142.5
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++|||++||++|+++|+++||.|+|+++...+ +.+|+++||+||+|.|+.+.|.++|++|+ .++
T Consensus 72 ~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~l---~~e~l~~fdvVV~t~~~~~~~~~in~~cr-------------~~~ 135 (1008)
T TIGR01408 72 EDDVGRNRAEAVVKKLAELNPYVHVSSSSVPF---NEEFLDKFQCVVLTEMSLPLQKEINDFCH-------------SQC 135 (1008)
T ss_pred hHHcCchHHHHHHHHHHHHCCCceEEEecccC---CHHHHcCCCEEEECCCCHHHHHHHHHHHH-------------HcC
Confidence 36899999999999999999999999998766 35799999999999999999999999999 788
Q ss_pred --CcEEEcccCCcceEEEEEeCCCCCccccccC--CCCCCCCCCccccc-------------------------------
Q 018101 81 --KPMVDGGTEGFKGHARVIIPGVTPCFECTIW--LFPPQVKFPLCTLA------------------------------- 125 (360)
Q Consensus 81 --iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~~~~~p~Cti~------------------------------- 125 (360)
+|+|.+++.|+.|++++. .++||.|.-. ..|....+..|+-.
T Consensus 136 ~~I~fI~~~~~G~~G~vf~D---~g~~f~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~ 212 (1008)
T TIGR01408 136 PPIAFISADVRGLFGSLFCD---FGDEFEVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTG 212 (1008)
T ss_pred CCeEEEEEeecceEEEEEec---CCCceEEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccc
Confidence 999999999999998874 4567776542 11111111222100
Q ss_pred --C-CCCCch----hh--H----HHhhhh------------------------------------------------h--
Q 018101 126 --E-TPRTAA----HC--I----EYAHLI------------------------------------------------K-- 142 (360)
Q Consensus 126 --~-~P~~~e----hc--I----~wa~~~------------------------------------------------~-- 142 (360)
+ .|.... ++ | .|..+. +
T Consensus 213 lN~~~~~~i~~~~~~~f~i~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~~ 292 (1008)
T TIGR01408 213 LNDGSPRKITVISPYSFSIGDTTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQ 292 (1008)
T ss_pred cCCCCceeEEecCCceEEeccccccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHHH
Confidence 0 000000 00 0 011100 0
Q ss_pred hhhhcCCCCCC-CCChhHHHHHHHHHHHHHHHcCCCCc--ccceeecccccccccccchHHHHHHHHHHHHHHHHccCCC
Q 018101 143 WDEVHSGKSFD-PDDPEHMQWVYSEAVKRAELFGIPGV--TYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 219 (360)
Q Consensus 143 w~~~~~~~~fd-~dd~~~l~fi~~~anlra~~~~I~~~--~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~ 219 (360)
+...++ .+. ..+....+-+.+.|+......+.... +-..++.++...--.++|.+|++||++++|++|.++|...
T Consensus 293 f~~~~g--~~P~~~~~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~ 370 (1008)
T TIGR01408 293 FQEKYS--RKPNVGCQQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFS 370 (1008)
T ss_pred HHHHcC--CCCCCCCHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCC
Confidence 000011 111 11334455566666666666665432 2223444443333468899999999999999999999999
Q ss_pred cccceeeeecccCce
Q 018101 220 TLSNYLTYNGVAGLH 234 (360)
Q Consensus 220 ~l~n~~~~~~~~~~~ 234 (360)
|+++++.|++..++.
T Consensus 371 Pi~q~~~~D~~e~l~ 385 (1008)
T TIGR01408 371 PLCQWFYFDSAESLP 385 (1008)
T ss_pred CceeeEEeehhhhCC
Confidence 999999999876554
No 36
>PRK14851 hypothetical protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=168.23 Aligned_cols=97 Identities=22% Similarity=0.345 Sum_probs=91.2
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCC--HHHHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDS--IEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn--~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+|||++|+++++++|+++||.++|+++...|++.+ .+|++++|+||+|+|| +++|+++|+.|+ .
T Consensus 92 ~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~-------------~ 158 (679)
T PRK14851 92 PSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR-------------E 158 (679)
T ss_pred hhCCCHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH-------------H
Confidence 68999999999999999999999999999998766 7899999999999997 578999999998 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCC
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL 112 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~ 112 (360)
.+||+|.+|+.|+.|++.++.|+ +.||+|.++.
T Consensus 159 ~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~~ 191 (679)
T PRK14851 159 KGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFNI 191 (679)
T ss_pred CCCCEEEeecccccceEEEEcCC-CCCHhHhccC
Confidence 89999999999999999999997 8999999864
No 37
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.69 E-value=1.1e-15 Score=153.25 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCC---cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~---~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+||||+||++++++|+++||+|+++++...+.+ .+.+||++||+||.+.++...+..++++|+ +
T Consensus 69 ~diGk~kA~~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~-------------~ 135 (425)
T cd01493 69 SSLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLW-------------S 135 (425)
T ss_pred hhcCcHHHHHHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------H
Confidence 689999999999999999999999999988764 347899999999999999999999999999 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccc
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECT 109 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~ 109 (360)
.++|+|.+++.|+.|+++++.|. ..+.++.
T Consensus 136 ~~iPlI~~~s~G~~G~v~v~~~~-h~i~et~ 165 (425)
T cd01493 136 ANIPLLYVRSYGLYGYIRIQLKE-HTIVESH 165 (425)
T ss_pred cCCCEEEEecccCEEEEEEEECC-eEEEECC
Confidence 89999999999999999999984 3355543
No 38
>PRK07877 hypothetical protein; Provisional
Probab=99.69 E-value=9.5e-17 Score=169.66 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=117.3
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
+|||++|+++|+++|+++||+++|+++..++++.+ ++|++++|+|+||+||+++|.++|+.|+ +++
T Consensus 155 ~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~-------------~~~ 221 (722)
T PRK07877 155 FDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAAR-------------ARR 221 (722)
T ss_pred hhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------HcC
Confidence 68999999999999999999999999999999766 7899999999999999999999999999 899
Q ss_pred CcEEEcccCCcceEEE----EEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCC
Q 018101 81 KPMVDGGTEGFKGHAR----VIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD 156 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~----vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd 156 (360)
||+|.++..+ |++. -+.| .++||+|+++..+. .....++.+.- .| |+..+ .+.+.
T Consensus 222 iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl~~~~~~-~~~~~~~~~~~--~p-~~~~~--------------~~~~~ 280 (722)
T PRK07877 222 IPVLMATSDR--GLLDVERFDLEP-DRPILHGLLGDIDA-AKLAGLSTKDK--VP-HVLRI--------------LDAEA 280 (722)
T ss_pred CCEEEEcCCC--CCcCcceeeeCC-CCceeeccCCCCCh-hhhccCChhcc--Cc-ceeee--------------ccccc
Confidence 9999998555 7763 3456 69999999875432 33333321100 00 00000 00000
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccC
Q 018101 157 PEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 217 (360)
Q Consensus 157 ~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~ 217 (360)
. .+..++.-..+. .-+ +--|.+++.+++-||+++-++.|++.|.
T Consensus 281 -~-------~~r~~~s~~~~~--------~~~-~~~pql~~~~~~~~~~~~~~~~~i~l~~ 324 (722)
T PRK07877 281 -L-------SARMAASLVEVD--------QTL-STWPQLASDVVLGAAAVAEAVRRIGLGE 324 (722)
T ss_pred -c-------CHHHHHHHHhcc--------Ccc-ccCCchHHHHHhhHHHHHHHHHHHHcCC
Confidence 0 011111111111 111 2359999999999999999999999886
No 39
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.67 E-value=4.2e-16 Score=145.46 Aligned_cols=112 Identities=29% Similarity=0.269 Sum_probs=94.0
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++|||++||++++++++++| +++++++..++.+ .+++.++|+||+|+||+++|.++++.|.+. . ...
T Consensus 68 ~~dVG~~Ka~v~~~ri~~~~-~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~---~-------~~~ 134 (244)
T TIGR03736 68 PADVGQNKAIVLVNRLNQAM-GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGG---Y-------SGY 134 (244)
T ss_pred hhHCCcHHHHHHHHHHHhcc-CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHh---c-------ccc
Confidence 36899999999999999998 8999999998876 445779999999999999999999999820 0 125
Q ss_pred CcEEEccc--------CCc-----ceEEEEEeCCCCCccccccCCCC-CCCCCCccccc
Q 018101 81 KPMVDGGT--------EGF-----KGHARVIIPGVTPCFECTIWLFP-PQVKFPLCTLA 125 (360)
Q Consensus 81 iPlI~~gt--------~G~-----~G~v~vi~p~~t~Cy~C~~~~~~-~~~~~p~Cti~ 125 (360)
+||+++|+ .|. +|+.++++|+.|+||.|..+..+ ++.+.|+||++
T Consensus 135 ~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 135 AYWLDLGNRADDGQVILGQVPSRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred cceecccCCCCCCcEEEEecccccccCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 89999999 444 67778889999999999986433 67789999975
No 40
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=99.66 E-value=1.3e-16 Score=124.78 Aligned_cols=84 Identities=42% Similarity=0.587 Sum_probs=77.3
Q ss_pred EEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHhhcccccceeeeccccccccCC
Q 018101 255 IELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKK 334 (360)
Q Consensus 255 ~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~elv~~g~~~~l~~~~~~~v~d~~ 334 (360)
+++++++||++|++.+++++++++..|+|+.+++.||+.+||++++.++.||.|+|+||+.+| +++ .|||++
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g--~ei------~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDG--EEI------TVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSS--EEE------EEEETT
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCC--CEE------EEECCC
Confidence 467788999999999999988999999999999999999999999999999999999999999 899 999999
Q ss_pred cceeEEEEEEEe
Q 018101 335 TSCLRKLRVVFR 346 (360)
Q Consensus 335 ~~~~~~~~~~~~ 346 (360)
.+.+++|+|+|.
T Consensus 73 lp~~~~~rl~f~ 84 (84)
T PF08825_consen 73 LPISLRLRLKFK 84 (84)
T ss_dssp ESSEEEEEEEEE
T ss_pred CceeEEEEEEeC
Confidence 999999999995
No 41
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.58 E-value=4.3e-15 Score=126.65 Aligned_cols=83 Identities=33% Similarity=0.501 Sum_probs=76.5
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCc-chhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~-~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
+|||++|+++++++++++||.++|+++..++.+. ..++++++|+||+|+|+.++|.++|++|+ +++
T Consensus 51 ~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~-------------~~~ 117 (135)
T PF00899_consen 51 EDVGKNKAEAAKERLQEINPDVEVEAIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICR-------------EYG 117 (135)
T ss_dssp GGTTSBHHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHH-------------HTT
T ss_pred ccchhHHHHHHHHHHHHhcCceeeeeeecccccccccccccCCCEEEEecCCHHHHHHHHHHHH-------------HcC
Confidence 5899999999999999999999999999999654 37888999999999999999999999999 889
Q ss_pred CcEEEcccCCcceEEEE
Q 018101 81 KPMVDGGTEGFKGHARV 97 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~v 97 (360)
+|+|++|+.|+.|+++.
T Consensus 118 ~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 118 IPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp -EEEEEEEETTEEEEEE
T ss_pred CCEEEEEeecCEEEEEE
Confidence 99999999999999854
No 42
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.58 E-value=8.8e-15 Score=125.82 Aligned_cols=86 Identities=34% Similarity=0.514 Sum_probs=80.6
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++|+++++++++++||+++|+++...+.+.+ .++++++|+||+|.|+.++|.++|++|+ +.
T Consensus 47 ~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~-------------~~ 113 (143)
T cd01483 47 QADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACK-------------EL 113 (143)
T ss_pred hhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHH-------------Hc
Confidence 368999999999999999999999999999887654 6889999999999999999999999999 88
Q ss_pred CCcEEEcccCCcceEEEEEe
Q 018101 80 IKPMVDGGTEGFKGHARVII 99 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~ 99 (360)
++|+|++|+.|+.|+++++.
T Consensus 114 ~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 114 GIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred CCCEEEEcCCCcEEEEEEEE
Confidence 99999999999999999886
No 43
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.56 E-value=9.8e-14 Score=132.38 Aligned_cols=84 Identities=29% Similarity=0.328 Sum_probs=73.5
Q ss_pred CC--cCchHHHHHHHHHHhhCCCceEEEEeccCC----------------Cc-c-hhhccCCcEEEEcCCCHHHHHHHHH
Q 018101 2 ED--VGKPKAEVAAKRVMERVSGVNIVPHFCRIE----------------DK-D-ISFYNDFNIIVLGLDSIEARSYINA 61 (360)
Q Consensus 2 ~d--IGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~----------------~~-~-~~f~~~~DvVi~a~Dn~~aR~~iN~ 61 (360)
+| +|++||++|+++|+++||+++|+++..+|. +. + .++++++|+|++|+||+++|..+|.
T Consensus 48 ~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~ 127 (307)
T cd01486 48 EDCKGGKPKAEAAAERLKEIFPSIDATGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTL 127 (307)
T ss_pred chhhcCccHHHHHHHHHHHHCCCcEEEEeeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHH
Confidence 46 999999999999999999999999987761 11 1 5789999999999999999999999
Q ss_pred HHhhchhcccCCCccccCCCcEEEcccCCcceEEEEEe
Q 018101 62 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 99 (360)
Q Consensus 62 ~c~~~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~ 99 (360)
+|. ..++|+|++ ..||.|++....
T Consensus 128 ~~~-------------~~~k~~I~a-alGfdg~lvmrh 151 (307)
T cd01486 128 LSA-------------AKNKLVINA-ALGFDSYLVMRH 151 (307)
T ss_pred HHH-------------HhCCcEEEE-EeccceEEEEEe
Confidence 998 789999985 679999987653
No 44
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.53 E-value=7.7e-14 Score=127.04 Aligned_cols=93 Identities=20% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC-
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET- 79 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~- 79 (360)
+|+|++|+++++++++++||.++++++..++++.+ .++++++|+||+|+||+++|..+++.|.. ..
T Consensus 69 ~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~------------~~~ 136 (200)
T TIGR02354 69 SQVGEPKTEALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLE------------KYK 136 (200)
T ss_pred hhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH------------HcC
Confidence 58999999999999999999999999999998765 77899999999999999999987666651 22
Q ss_pred CCcEEEcccCCcceEE--EEEeCC--CCCcccc
Q 018101 80 IKPMVDGGTEGFKGHA--RVIIPG--VTPCFEC 108 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v--~vi~p~--~t~Cy~C 108 (360)
..+++.+ .|+.|+. ..|.+. ...||.|
T Consensus 137 ~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 137 DKYLIAA--SGLAGYDDANSIKTRKISKHFYLC 167 (200)
T ss_pred CCcEEEE--eccccCCCCceEEecccCCCEEEc
Confidence 3455553 3444433 344332 3568888
No 45
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.46 E-value=8.4e-15 Score=101.17 Aligned_cols=44 Identities=43% Similarity=0.962 Sum_probs=34.7
Q ss_pred CCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhc
Q 018101 101 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH 147 (360)
Q Consensus 101 ~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~ 147 (360)
+.|+||+|..+ ++++++|+|||||||+.|+|||+||| .+|+..|
T Consensus 1 ~~Tecy~c~~~--~~~~~~P~CTir~~P~~~~HcI~wAk-~~f~~~F 44 (45)
T PF10585_consen 1 HVTECYECSPD--PPEKSYPVCTIRNFPRTPEHCIEWAK-DLFEELF 44 (45)
T ss_dssp TTS--TTCSGG--GSSSSEEHHHHHTS-SSHHHHHHHHH-HHHHHHH
T ss_pred CccccccCCCC--CCCCCCCcchhhcCCCCchHHHHHHH-HHHHHHh
Confidence 46999999986 55667999999999999999999999 6676643
No 46
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.27 E-value=1.2e-11 Score=114.96 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=70.4
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhc-cCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~-~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
+|||++|+++++++++++||+++|+++...+++.+ .+++ .++|+||+|.|++++|..+|+.|+ ..
T Consensus 60 ~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~-------------~~ 126 (231)
T cd00755 60 STVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCR-------------KR 126 (231)
T ss_pred hhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH-------------Hh
Confidence 68999999999999999999999999999998644 4555 579999999999999999999998 78
Q ss_pred CCcEEEcccCCcc
Q 018101 80 IKPMVDGGTEGFK 92 (360)
Q Consensus 80 ~iPlI~~gt~G~~ 92 (360)
++|+|.++..|-+
T Consensus 127 ~ip~I~s~g~g~~ 139 (231)
T cd00755 127 KIPVISSMGAGGK 139 (231)
T ss_pred CCCEEEEeCCcCC
Confidence 9999999877765
No 47
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.22 E-value=1.8e-11 Score=96.20 Aligned_cols=56 Identities=30% Similarity=0.472 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHHHHHHHHccCCCccc-ceeeeecccCceeeeeecccCCCCccCCC
Q 018101 195 IASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKDCLVCGP 251 (360)
Q Consensus 195 IatT~Aivagl~~~E~lKil~~~~~~l~-n~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 251 (360)
++++.++||+++|+|++|+|+|.++++. .++.||+....+ ..+.+.|+|+|++|+.
T Consensus 26 lg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~-~~i~~~k~~~C~~C~~ 82 (84)
T PF05237_consen 26 LGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSF-RSIRIKKNPDCPVCGP 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEE-EEEE----TT-TTT--
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeE-EEEecCCCccCcCcCc
Confidence 6788899999999999999999877664 677888888755 4788889999999986
No 48
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.20 E-value=5.9e-11 Score=122.00 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=106.2
Q ss_pred HHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCH--HHHHHHHHHHhhchhcccCCCccccCC---CcEEEcc
Q 018101 13 AKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREETI---KPMVDGG 87 (360)
Q Consensus 13 a~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~--~aR~~iN~~c~~~~~~~~~~~~~~~~~---iPlI~~g 87 (360)
++..+++||+++|+.+.....+.-.+.++.+|+|+...|+. .--+|+|+.|+ +.+ +|++.+|
T Consensus 175 ~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acv-------------kegk~~IPai~~G 241 (637)
T TIGR03693 175 AEIAEETDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCK-------------EEGKGFIPAICLK 241 (637)
T ss_pred HHHHHHhCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHH-------------HcCCCeEEEEEcc
Confidence 33444499999999998633222378889999999999954 55679999999 788 7888999
Q ss_pred cCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhHHHHHHHHH
Q 018101 88 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 167 (360)
Q Consensus 88 t~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~l~fi~~~a 167 (360)
..++.|.++. |+.++|++|.........
T Consensus 242 ~~~liGPlft--PgkTGCWeCa~~RL~e~~-------------------------------------------------- 269 (637)
T TIGR03693 242 QVGLAGPVFQ--QHGDECFEAAWHRLHESA-------------------------------------------------- 269 (637)
T ss_pred cceeecceEC--CCCCcHHHHHHHHHHHHh--------------------------------------------------
Confidence 9999998765 999999999642110000
Q ss_pred HHHHHHcCCCCcccceeecccccccccc-cchHHHHHHHHHHHHHHHHccCCCc--ccceeeeecccCceeeeeecccCC
Q 018101 168 VKRAELFGIPGVTYSLTQGVVKNIIPAI-ASTNAIISAACALETLKIASGCSKT--LSNYLTYNGVAGLHIKVTEFVKDK 244 (360)
Q Consensus 168 nlra~~~~I~~~~~~~~~~iag~IiPAI-atT~Aivagl~~~E~lKil~~~~~~--l~n~~~~~~~~~~~~~~~~~~~~~ 244 (360)
+.... . .-++ ++|.|+++++++.|++|++++..+. .+.++.+|..+... ....+.|.|
T Consensus 270 --------L~~~~----~------s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~-~WH~vvkrP 330 (637)
T TIGR03693 270 --------LHEEN----S------LAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEG-GWHAFIKHP 330 (637)
T ss_pred --------cCCCC----c------ccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcccccc-ccccCCCCC
Confidence 00000 0 0112 3368999999999999999975332 23566777655332 234566889
Q ss_pred CCccCCC
Q 018101 245 DCLVCGP 251 (360)
Q Consensus 245 ~C~vC~~ 251 (360)
.|+ |..
T Consensus 331 qC~-~~~ 336 (637)
T TIGR03693 331 DAS-CEK 336 (637)
T ss_pred CCC-CCC
Confidence 998 764
No 49
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.14 E-value=1.1e-10 Score=110.74 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=68.9
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhc-cCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~-~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
+|||++|+++++++++++||+++|+++...+++.+ .+++ .++|+||+|.|++.++..+|+.|+ +.
T Consensus 79 ~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~-------------~~ 145 (268)
T PRK15116 79 DNVGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCR-------------RN 145 (268)
T ss_pred hhcChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH-------------Hc
Confidence 58999999999999999999999999988887544 5565 479999999999999999999998 78
Q ss_pred CCcEEEcccCCcc
Q 018101 80 IKPMVDGGTEGFK 92 (360)
Q Consensus 80 ~iPlI~~gt~G~~ 92 (360)
++|+|.+|..|-+
T Consensus 146 ~ip~I~~gGag~k 158 (268)
T PRK15116 146 KIPLVTTGGAGGQ 158 (268)
T ss_pred CCCEEEECCcccC
Confidence 9999988766644
No 50
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-10 Score=121.81 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=79.9
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++||||++|++..++|.++|+.|.|.++.+.+ +.+|+++|++||.+--..+....||++|+ +++
T Consensus 85 E~DigknRA~as~~~LaeLN~yV~V~v~t~~~---~~e~L~~FqvVVlt~~~le~q~~i~~fch-------------~~~ 148 (1013)
T KOG2012|consen 85 EEDIGKNRAEASVEKLAELNNYVPVVVLTGPL---TEEFLSDFQVVVLTDASLEEQLKINDFCH-------------SHG 148 (1013)
T ss_pred HHhcCCchHHHHHHHHHHhhcceeeEEecCcc---cHHHHhCCcEEEEecCchHHHHHHHHHHH-------------hcC
Confidence 47999999999999999999999999998765 47999999999999888999999999999 899
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccc
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECT 109 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~ 109 (360)
|-+|.+-+.|+.|++++.. ++-|.|+
T Consensus 149 i~fi~ad~RGLfg~lFCDF---G~eF~v~ 174 (1013)
T KOG2012|consen 149 IAFIAADTRGLFGQLFCDF---GEEFTVL 174 (1013)
T ss_pred eEEEEeccchhhhhhhccC---CCceEEe
Confidence 9999999999999998743 4445443
No 51
>PRK06153 hypothetical protein; Provisional
Probab=99.13 E-value=3.5e-10 Score=111.41 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=74.2
Q ss_pred CCcCc--hHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 2 EDVGK--PKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 2 ~dIGk--~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
+|||+ +|++++++++.++|| .|+++..++++.+.+.+.++|+||+|+|+.++|.++|+.|. ..
T Consensus 226 ~DvGk~~~KVevaa~rl~~in~--~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~-------------~~ 290 (393)
T PRK06153 226 EELREAPKKVDYFKSRYSNMRR--GIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLE-------------AL 290 (393)
T ss_pred hHcCCcchHHHHHHHHHHHhCC--eEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH-------------Hc
Confidence 68999 999999999999998 46788888876666678999999999999999999999998 78
Q ss_pred CCcEEEcccCCcceEEEEEeCCC-CCccccccC
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGV-TPCFECTIW 111 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~-t~Cy~C~~~ 111 (360)
++|||++|.. . . +..+. +.|.+|+..
T Consensus 291 gIP~Id~G~~-l----~-~~~g~l~G~~Rvt~~ 317 (393)
T PRK06153 291 GIPFIDVGMG-L----E-LSNGSLGGILRVTLS 317 (393)
T ss_pred CCCEEEeeec-c----e-ecCCCcCcEEEEEEe
Confidence 9999999863 1 1 11332 568998874
No 52
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.11 E-value=9.9e-11 Score=107.65 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=69.1
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhc-cCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~-~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||+|+++.+++++++||.++|+++...+++.+ .+|+ .+||+||||.|++.++-.+-..|+ .+
T Consensus 79 ~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~-------------~~ 145 (263)
T COG1179 79 GDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCR-------------RN 145 (263)
T ss_pred hhcccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHH-------------Hc
Confidence 58999999999999999999999999999999765 5554 569999999999999999999998 88
Q ss_pred CCcEEEcccCCc
Q 018101 80 IKPMVDGGTEGF 91 (360)
Q Consensus 80 ~iPlI~~gt~G~ 91 (360)
++|+|.+|-.|-
T Consensus 146 ki~vIss~Gag~ 157 (263)
T COG1179 146 KIPVISSMGAGG 157 (263)
T ss_pred CCCEEeeccccC
Confidence 999998875543
No 53
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.4e-09 Score=107.04 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=77.4
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCC---cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~---~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+++||+||+++.+.++++||+|+-......-+. .+.+||.+|++|+.+--+-+.-..+.+.|+ .
T Consensus 76 ~~~GksrA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~-------------~ 142 (523)
T KOG2016|consen 76 KSIGKSRAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILR-------------E 142 (523)
T ss_pred HhhchhHHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHH-------------h
Confidence 478999999999999999999998887765543 468999999999999778788889999999 8
Q ss_pred CCCcEEEcccCCcceEEEEEeCC
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPG 101 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~ 101 (360)
+++|+++.-+.|+.|.++..+..
T Consensus 143 ~~vpll~~rs~Gl~G~iRI~ikE 165 (523)
T KOG2016|consen 143 ANVPLLLTRSYGLAGTIRISIKE 165 (523)
T ss_pred cCCceEEEeeecceEEEEEEeee
Confidence 99999999999999999988764
No 54
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=98.91 E-value=4.1e-09 Score=83.35 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=60.2
Q ss_pred EeC-CCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hcccccceeeeccccccccC
Q 018101 256 ELD-TSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDK 333 (360)
Q Consensus 256 ~~~-~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l~~~~~~~v~d~ 333 (360)
.++ ..+||++|++.+.++ .+++..|.++.++++||++.. +.+..++.|+|++| +++| ++| .|+|+
T Consensus 3 ~~d~~~~TL~~lv~~Vlk~-~Lg~~~P~v~~~~~ilyd~de----~~~~~~l~k~L~elgi~~g--s~L------~v~D~ 69 (87)
T PF14732_consen 3 KVDTKKMTLGDLVEKVLKK-KLGMNEPDVSVGGTILYDSDE----EEYDDNLPKKLSELGIVNG--SIL------TVDDF 69 (87)
T ss_dssp EE-TTT-BHHHHHHHCCCC-CS--SSEEEEES-EEEE-SSS----SSSTTCTTSBGGGGT--TT---EE------EEEET
T ss_pred EEechhCcHHHHHHHHHHh-ccCCCCCEEEeCCCEEEcCCc----chhhhcccCChhHcCCCCC--CEE------EEEEc
Confidence 344 368999999999876 589999999999999998752 35678999999999 9999 899 99999
Q ss_pred CcceeEEEEEEEecC
Q 018101 334 KTSCLRKLRVVFRGV 348 (360)
Q Consensus 334 ~~~~~~~~~~~~~~~ 348 (360)
.+.+++.+.|.|+..
T Consensus 70 ~q~~~~~i~i~h~~~ 84 (87)
T PF14732_consen 70 DQDFNLEINIKHREE 84 (87)
T ss_dssp TTTEEEEEEEEE-SS
T ss_pred CCCcEEEEEEEecCc
Confidence 999888888888653
No 55
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=98.76 E-value=2.3e-08 Score=84.39 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=58.7
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHhhcccccceeeeccccccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQS 331 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~elv~~g~~~~l~~~~~~~v~ 331 (360)
|+++.++.++||++|+++++++| ++++.||++|+++||.++ . ....++||+++++||++.-.+..+ .
T Consensus 34 WDr~~v~~~~Tl~~li~~~~~~~--~lev~ml~~g~~~LY~~f--~-~~~~~~rl~~~i~elv~~v~k~~~--------~ 100 (125)
T PF09358_consen 34 WDRIEVNGDMTLQELIDYFKEKY--GLEVTMLSQGVSLLYSSF--P-PPKHKERLKMPISELVEEVTKKPI--------P 100 (125)
T ss_dssp T-EEEEES--BHHHHHHHHHHTT--S-EEEEEEETTEEEEETT----HHHHHHHTTSBHHHHHHHHTSS-----------
T ss_pred eeEEEEcCCCCHHHHHHHHHHHh--CceEEEEEeCCEEEEecC--C-hhhhHHHhCCcHHHHHHHhcCCCC--------C
Confidence 99999998899999999999988 889999999999999988 2 234667999999999875421333 3
Q ss_pred cCCcceeEEEEEEEec
Q 018101 332 DKKTSCLRKLRVVFRG 347 (360)
Q Consensus 332 d~~~~~~~~~~~~~~~ 347 (360)
+.+ .-+.|.+.++.
T Consensus 101 ~~~--~~l~l~v~~~d 114 (125)
T PF09358_consen 101 PGQ--KYLVLEVSCED 114 (125)
T ss_dssp TT----EEEEEEEEE-
T ss_pred CCc--eEEEEEEEEeC
Confidence 333 36777788875
No 56
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.3e-06 Score=79.72 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=67.3
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hh-hccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-IS-FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~-f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
+|||.||+.+.+++++++-|.++|++...-.+..+ ++ ++.+-|+|+||.||++++--+-+.|+ .+
T Consensus 123 ~DVG~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~-------------~~ 189 (430)
T KOG2018|consen 123 ADVGTPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCY-------------NH 189 (430)
T ss_pred hhcCCchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHH-------------Hc
Confidence 59999999999999999999999999988777654 44 45679999999999999999999998 89
Q ss_pred CCcEEEcccCCcc
Q 018101 80 IKPMVDGGTEGFK 92 (360)
Q Consensus 80 ~iPlI~~gt~G~~ 92 (360)
++++|.+--.+.+
T Consensus 190 ~l~Viss~Gaaak 202 (430)
T KOG2018|consen 190 GLKVISSTGAAAK 202 (430)
T ss_pred CCceEeccCcccc
Confidence 9999987544433
No 57
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=97.67 E-value=0.00018 Score=72.75 Aligned_cols=77 Identities=29% Similarity=0.369 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHhhCCCceEEEEeccCC-------Cc-------c----hhhccCCcEEEEcCCCHHHHHHHHHHHhhc
Q 018101 5 GKPKAEVAAKRVMERVSGVNIVPHFCRIE-------DK-------D----ISFYNDFNIIVLGLDSIEARSYINAVACSF 66 (360)
Q Consensus 5 Gk~Ka~vaa~~l~~~Np~v~I~~~~~~i~-------~~-------~----~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~ 66 (360)
|++||++|+++|++++|.+.-+.|...|- +. + ++++++.|+|+..+|+.++|..=.-+|.
T Consensus 395 g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a-- 472 (669)
T KOG2337|consen 395 GRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAA-- 472 (669)
T ss_pred CCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHh--
Confidence 79999999999999999999888877663 10 1 4578999999999999999876666665
Q ss_pred hhcccCCCccccCCCcEEEcccCCcceEE
Q 018101 67 LEYETDDKPREETIKPMVDGGTEGFKGHA 95 (360)
Q Consensus 67 ~~~~~~~~~~~~~~iPlI~~gt~G~~G~v 95 (360)
..++-+|++. .||..++
T Consensus 473 -----------~~~KivINaA-LGFDsyl 489 (669)
T KOG2337|consen 473 -----------AKNKIVINAA-LGFDSYL 489 (669)
T ss_pred -----------hhcceEeeee-cccceeE
Confidence 6677888875 5776543
No 58
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=96.80 E-value=0.0023 Score=60.23 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=42.2
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHH
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEA 55 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~a 55 (360)
.|+|++||++|+++++++||.|+|+++..++++. .+|++|+.+.-+.+.
T Consensus 74 ~dvGk~KAeaAa~~L~eLNP~V~V~~i~~rld~~-----n~fqvvV~~~~~le~ 122 (287)
T PTZ00245 74 GEAGGTRGARALGALQRLNPHVSVYDAVTKLDGS-----SGTRVTMAAVITEED 122 (287)
T ss_pred cccCCcHHHHHHHHHHHHCCCcEEEEcccccCCc-----CCceEEEEEcccHHH
Confidence 3689999999999999999999999999888653 489999998766654
No 59
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=92.21 E-value=0.19 Score=45.55 Aligned_cols=46 Identities=24% Similarity=0.360 Sum_probs=34.9
Q ss_pred CCHHHHH-HHHHHHhhchhcccCCCccccCCCcEEEcccCCcceEEEE-EeCCCCCccccc
Q 018101 51 DSIEARS-YINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV-IIPGVTPCFECT 109 (360)
Q Consensus 51 Dn~~aR~-~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~v-i~p~~t~Cy~C~ 109 (360)
|-.+.+. .+|+..+ ..++||+-....|..+.+-+ +.|+.|+|++|+
T Consensus 146 Dyl~p~L~~~n~~~l-------------~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 146 DYLDPELAAINQRAL-------------AAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred CCCChHHHHHHHHHH-------------HcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 4445443 6899898 88999998777666666655 569999999995
No 60
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=85.13 E-value=3.4 Score=34.42 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=29.3
Q ss_pred hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcccCCcc
Q 018101 37 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 92 (360)
Q Consensus 37 ~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt~G~~ 92 (360)
.++++.+|+|||.+ ++++-...-+.|. ++++|+|-| |.||.
T Consensus 62 ~~~~~~~DVvIDfT-~p~~~~~~~~~~~-------------~~g~~~ViG-TTG~~ 102 (124)
T PF01113_consen 62 EELLEEADVVIDFT-NPDAVYDNLEYAL-------------KHGVPLVIG-TTGFS 102 (124)
T ss_dssp HHHTTH-SEEEEES--HHHHHHHHHHHH-------------HHT-EEEEE--SSSH
T ss_pred HHhcccCCEEEEcC-ChHHhHHHHHHHH-------------hCCCCEEEE-CCCCC
Confidence 56788899999998 7777777777777 789999876 55663
No 61
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=79.39 E-value=3.1 Score=42.50 Aligned_cols=27 Identities=44% Similarity=0.875 Sum_probs=24.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHcCCCC
Q 018101 152 FDPDDPEHMQWVYSEAVKRAELFGIPG 178 (360)
Q Consensus 152 fd~dd~~~l~fi~~~anlra~~~~I~~ 178 (360)
||.+|+.|++||.++|+++|+.|||+.
T Consensus 250 fd~~~~~h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 250 FDVNNPLHLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 667788999999999999999999875
No 62
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=75.94 E-value=2.1 Score=33.13 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=31.1
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
.++++++..|+.+|.+.+.+.. ++... ...||... ...+.-.....++|+++ +++| +.+
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l--~~~~~-----~~~L~~~~--~~~~~l~s~~~~tl~~lglkHG--dml 75 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQL--SIPDS-----SQSLSKDR--NNKEELKSSDSKTLSSLGLKHG--DML 75 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS-----TT-----T---BSSG--GGGGCSSS-TT-CCCCT---TT---EE
T ss_pred EEEEcCCcccHHHHHHHHHHHc--CCCCc-----ceEEEecC--CCCcccccCCcCCHHHcCCCCc--cEE
Confidence 5777888899999999998865 33332 33444332 11111112357899999 9999 677
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=72.31 E-value=23 Score=28.25 Aligned_cols=64 Identities=17% Similarity=0.032 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCC-CceEEEEeccCC-----------CcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccc
Q 018101 10 EVAAKRVMERVS-GVNIVPHFCRIE-----------DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPRE 77 (360)
Q Consensus 10 ~vaa~~l~~~Np-~v~I~~~~~~i~-----------~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~ 77 (360)
.+|+++++.+-. +.+|+.+...+. ++ .+.++++++|+.|+|+.+.-..+-+.|+
T Consensus 17 ~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~-~~~l~~~~lV~~at~d~~~n~~i~~~a~------------- 82 (103)
T PF13241_consen 17 PVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREF-EEDLDGADLVFAATDDPELNEAIYADAR------------- 82 (103)
T ss_dssp HHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS--GGGCTTESEEEE-SS-HHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhH-HHHHhhheEEEecCCCHHHHHHHHHHHh-------------
Confidence 356667766643 578888777641 12 3567899999999999998888999997
Q ss_pred cCCCcEEEcc
Q 018101 78 ETIKPMVDGG 87 (360)
Q Consensus 78 ~~~iPlI~~g 87 (360)
..++|+-.+.
T Consensus 83 ~~~i~vn~~D 92 (103)
T PF13241_consen 83 ARGILVNVVD 92 (103)
T ss_dssp HTTSEEEETT
T ss_pred hCCEEEEECC
Confidence 6778776554
No 64
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.59 E-value=40 Score=26.55 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHHHHHHHhhCCCceEEEE--eccCCCcc---hhhccCCcEEEEcCCCH--HHHHHHHHHHhhchhcccCCCccccCCCc
Q 018101 10 EVAAKRVMERVSGVNIVPH--FCRIEDKD---ISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREETIKP 82 (360)
Q Consensus 10 ~vaa~~l~~~Np~v~I~~~--~~~i~~~~---~~f~~~~DvVi~a~Dn~--~aR~~iN~~c~~~~~~~~~~~~~~~~~iP 82 (360)
...++.+.+. +.+...| ........ +.-+++.|+||..+|.+ .+-..+-+.|. +.++|
T Consensus 13 ~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~ak-------------k~~ip 77 (97)
T PF10087_consen 13 RRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAK-------------KYGIP 77 (97)
T ss_pred HHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHH-------------HcCCc
Confidence 3445555554 4666666 23332222 45677889999999987 57778888998 88999
Q ss_pred EEEcccCCc
Q 018101 83 MVDGGTEGF 91 (360)
Q Consensus 83 lI~~gt~G~ 91 (360)
++.+-..|.
T Consensus 78 ~~~~~~~~~ 86 (97)
T PF10087_consen 78 IIYSRSRGV 86 (97)
T ss_pred EEEECCCCH
Confidence 998876654
No 65
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=64.87 E-value=28 Score=31.04 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCCceEEEEeccCCCcc-h---hhc--cCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 8 KAEVAAKRVMERVSGVNIVPHFCRIEDKD-I---SFY--NDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 8 Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~---~f~--~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
-++.|++.+++.+|+++|..++..+.+.. . +.+ ++.|+|+.|+..++...|+-+...
T Consensus 60 v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~ 122 (177)
T TIGR00696 60 VLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRH 122 (177)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHH
Confidence 35778899999999999998866665422 2 222 478999999999999999877654
No 66
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=62.62 E-value=40 Score=31.26 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=44.6
Q ss_pred HHHHHHHhh-CCCceEEEEeccCCC-----------------cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccC
Q 018101 11 VAAKRVMER-VSGVNIVPHFCRIED-----------------KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 72 (360)
Q Consensus 11 vaa~~l~~~-Np~v~I~~~~~~i~~-----------------~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~ 72 (360)
||+++++.+ .-+.+|+.+...+.+ +..+.+.++++||.|+|+.+.-..+-+.|.
T Consensus 36 VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~-------- 107 (223)
T PRK05562 36 AAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKHCD-------- 107 (223)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHHHH--------
Confidence 455555444 335666666554431 334567899999999999998888888997
Q ss_pred CCccccCCCcEEEccc
Q 018101 73 DKPREETIKPMVDGGT 88 (360)
Q Consensus 73 ~~~~~~~~iPlI~~gt 88 (360)
..++++..+.-
T Consensus 108 -----~~~~lvn~vd~ 118 (223)
T PRK05562 108 -----RLYKLYIDCSD 118 (223)
T ss_pred -----HcCCeEEEcCC
Confidence 66777765543
No 67
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=61.70 E-value=23 Score=31.46 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=45.5
Q ss_pred CcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEc---CCCHHHHHHHHHHHh
Q 018101 3 DVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLG---LDSIEARSYINAVAC 64 (360)
Q Consensus 3 dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a---~Dn~~aR~~iN~~c~ 64 (360)
.+|.+|++-+++ +-.-.+.-+|++....|+..+..++++ |+|+-| -|....-..+-+.|.
T Consensus 69 ~~GEyKv~Fi~r-l~~~~f~r~V~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~ 131 (217)
T COG4015 69 KVGEYKVDFIKR-LGRVHFGRRVEAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAK 131 (217)
T ss_pred CcchhHHHHHHH-hCcCCCCceeecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHH
Confidence 378999987764 444567789999999999888777777 776644 478777777777787
No 68
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=59.85 E-value=18 Score=36.43 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=42.0
Q ss_pred eEEEEeccCCCcc--hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcccCC
Q 018101 24 NIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 90 (360)
Q Consensus 24 ~I~~~~~~i~~~~--~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt~G 90 (360)
++++..-++.+.+ .+.++++|+||+|+..+-.+ .+-++|. ++++++++.....
T Consensus 48 ~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i-------------~~gv~yvDts~~~ 102 (389)
T COG1748 48 KVEALQVDAADVDALVALIKDFDLVINAAPPFVDL-TILKACI-------------KTGVDYVDTSYYE 102 (389)
T ss_pred cceeEEecccChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHH-------------HhCCCEEEcccCC
Confidence 7888888887653 68999999999999988777 4556676 7889998876543
No 69
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=55.38 E-value=46 Score=29.21 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhCCCceEEE-EeccCCCcc-h---hhc--cCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 9 AEVAAKRVMERVSGVNIVP-HFCRIEDKD-I---SFY--NDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 9 a~vaa~~l~~~Np~v~I~~-~~~~i~~~~-~---~f~--~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
++.|++++++.+|+++|.. ++....+.. . +.+ .+.|+|+.|+..+..-.|+.+...
T Consensus 59 ~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~ 121 (171)
T cd06533 59 LEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKD 121 (171)
T ss_pred HHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 3556678999999999998 455554322 2 233 368999999999999999988776
No 70
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=53.33 E-value=44 Score=25.89 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=35.8
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
...+.+.++.|++.+.+.++++.++ ... .-+.+|... .+ ....++.++ +++| +.+
T Consensus 23 ~~~~~v~~~~~l~~l~~~y~~~~gi--~~~----~~rf~f~G~--~L------~~~~T~~~l~m~d~--d~I 78 (87)
T cd01763 23 EVFFKIKRSTPLKKLMEAYCQRQGL--SMN----SVRFLFDGQ--RI------RDNQTPDDLGMEDG--DEI 78 (87)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHhCC--Ccc----ceEEEECCe--EC------CCCCCHHHcCCCCC--CEE
Confidence 4566788889999999999987633 321 122333221 11 246788999 9999 666
No 71
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=51.39 E-value=22 Score=35.18 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=37.3
Q ss_pred CCceEEEEeccCCCcc--hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEc
Q 018101 21 SGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 86 (360)
Q Consensus 21 p~v~I~~~~~~i~~~~--~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~ 86 (360)
...++.....++.+.. .++++++|+||+|+-.+ .-..+-++|. +.++++||.
T Consensus 44 ~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i-------------~~g~~yvD~ 97 (386)
T PF03435_consen 44 LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACI-------------EAGVHYVDT 97 (386)
T ss_dssp TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHH-------------HHT-EEEES
T ss_pred cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHH-------------HhCCCeecc
Confidence 4557777777777643 67899999999999777 4456778887 889999994
No 72
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=50.42 E-value=21 Score=29.30 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCceEEEEeccCCC----------------------cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhc
Q 018101 12 AAKRVMERVSGVNIVPHFCRIED----------------------KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEY 69 (360)
Q Consensus 12 aa~~l~~~Np~v~I~~~~~~i~~----------------------~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~ 69 (360)
..+.|.+ .|.+++.....+=.+ .+.+-+++.|+||.|+++-.++.+..++.
T Consensus 15 l~~lL~~-hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~~~~~~~~------ 87 (121)
T PF01118_consen 15 LLRLLAE-HPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASKELAPKLL------ 87 (121)
T ss_dssp HHHHHHH-TSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHHHHHHHHH------
T ss_pred HHHHHhc-CCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHHHHHHHHh------
Confidence 3455555 788887775443220 11234589999999999999999988885
Q ss_pred ccCCCccccCCCcEEEccc
Q 018101 70 ETDDKPREETIKPMVDGGT 88 (360)
Q Consensus 70 ~~~~~~~~~~~iPlI~~gt 88 (360)
+.++++||.+.
T Consensus 88 --------~~g~~ViD~s~ 98 (121)
T PF01118_consen 88 --------KAGIKVIDLSG 98 (121)
T ss_dssp --------HTTSEEEESSS
T ss_pred --------hCCcEEEeCCH
Confidence 67888998753
No 73
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.35 E-value=63 Score=28.35 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhCCCceEEEE-eccCCCcc-hhh---c--cCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 9 AEVAAKRVMERVSGVNIVPH-FCRIEDKD-ISF---Y--NDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 9 a~vaa~~l~~~Np~v~I~~~-~~~i~~~~-~~f---~--~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
++.+++.+++.+|+++|..+ +...++.. ++. + .+.|+|+.++..+..-.|+.+.-.
T Consensus 61 ~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~ 123 (172)
T PF03808_consen 61 LEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQ 123 (172)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 46788899999999999964 44454322 222 2 478999999999999899888886
No 74
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.42 E-value=1.1e+02 Score=28.71 Aligned_cols=63 Identities=25% Similarity=0.221 Sum_probs=40.5
Q ss_pred HHHHhhCCCceEEEEeccCC------------C-cc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 14 KRVMERVSGVNIVPHFCRIE------------D-KD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 14 ~~l~~~Np~v~I~~~~~~i~------------~-~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
+.+.+ .|++++.+....-. . .+ .++++.+|+|++++ ++++-..+-..|. ++
T Consensus 19 ~~l~~-~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al-------------~~ 83 (257)
T PRK00048 19 EAVEA-AEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFT-TPEATLENLEFAL-------------EH 83 (257)
T ss_pred HHHHh-CCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECC-CHHHHHHHHHHHH-------------Hc
Confidence 34433 47888877543211 1 12 44567899999998 5555566667776 88
Q ss_pred CCcEEEcccCCcc
Q 018101 80 IKPMVDGGTEGFK 92 (360)
Q Consensus 80 ~iPlI~~gt~G~~ 92 (360)
++|++-+ +.|+.
T Consensus 84 G~~vvig-ttG~s 95 (257)
T PRK00048 84 GKPLVIG-TTGFT 95 (257)
T ss_pred CCCEEEE-CCCCC
Confidence 9999955 66664
No 75
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=48.08 E-value=43 Score=24.29 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=32.7
Q ss_pred EEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 254 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 254 ~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
.+.++++.|+.+|.+.+.+.. ++.+ ....|+... ..++ -.++|+++ +++| +.+
T Consensus 13 ~i~v~~~~tv~~lK~~i~~~~--gi~~-----~~q~L~~~g-~~l~------d~~~L~~~~i~~g--~~l 66 (71)
T cd01812 13 DLSISSQATFGDLKKMLAPVT--GVEP-----RDQKLIFKG-KERD------DAETLDMSGVKDG--SKV 66 (71)
T ss_pred EEEECCCCcHHHHHHHHHHhh--CCCh-----HHeEEeeCC-cccC------ccCcHHHcCCCCC--CEE
Confidence 456777899999999998765 3332 222333222 1222 25678999 8888 455
No 76
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=47.99 E-value=68 Score=29.42 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=46.8
Q ss_pred HHHHHHHHhh-CCCceEEEEeccCC-----------------CcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhccc
Q 018101 10 EVAAKRVMER-VSGVNIVPHFCRIE-----------------DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET 71 (360)
Q Consensus 10 ~vaa~~l~~~-Np~v~I~~~~~~i~-----------------~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~ 71 (360)
++|.++++.+ +-+.+|+.+...+. ++..+.+..+++||.|+|+.+--..+-+.|.
T Consensus 22 ~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~------- 94 (210)
T COG1648 22 SVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERIAKAAR------- 94 (210)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHHHHHHH-------
Confidence 3566666655 44677777777662 2344556679999999999998888888997
Q ss_pred CCCccccCCCcEEEcccC
Q 018101 72 DDKPREETIKPMVDGGTE 89 (360)
Q Consensus 72 ~~~~~~~~~iPlI~~gt~ 89 (360)
..++|.-.+.--
T Consensus 95 ------~~~i~vNv~D~p 106 (210)
T COG1648 95 ------ERRILVNVVDDP 106 (210)
T ss_pred ------HhCCceeccCCc
Confidence 667776555443
No 77
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=46.88 E-value=45 Score=24.37 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=33.9
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
..+.+.++.+++.+++.++++.++ ... ..-.|+..+ .+-+.++++.++ +++| +.+
T Consensus 13 ~~~~v~~~~~~~~l~~~~~~~~~i--~~~----~~~~l~fdG-------~~L~~~~T~~~~~ied~--d~I 68 (72)
T PF11976_consen 13 IKFKVKPTTTVSKLIEKYCEKKGI--PPE----ESIRLIFDG-------KRLDPNDTPEDLGIEDG--DTI 68 (72)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHTT--TT-----TTEEEEETT-------EEE-TTSCHHHHT-STT--EEE
T ss_pred EEEEECCCCcHHHHHHHHHHhhCC--Ccc----ceEEEEECC-------EEcCCCCCHHHCCCCCC--CEE
Confidence 456677889999999999987633 331 222222221 112356889999 9999 666
No 78
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=46.48 E-value=68 Score=31.33 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=50.5
Q ss_pred HHhhCCCceEEEEecc--CCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcc-cCCc
Q 018101 16 VMERVSGVNIVPHFCR--IEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG-TEGF 91 (360)
Q Consensus 16 l~~~Np~v~I~~~~~~--i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~g-t~G~ 91 (360)
+....|++++.....+ +...+ .+++++.|+|+.|+.+-.++.|+-.+. +.+..+||-+ ...+
T Consensus 20 lL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~--------------~~g~~VIDlSadfRl 85 (310)
T TIGR01851 20 RLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVD--------------NPNTCIIDASTAYRT 85 (310)
T ss_pred HHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHH--------------hCCCEEEECChHHhC
Confidence 3344699999888755 33333 566789999999999999999887664 5678888764 3333
Q ss_pred ceEEEEEeCCCCC
Q 018101 92 KGHARVIIPGVTP 104 (360)
Q Consensus 92 ~G~v~vi~p~~t~ 104 (360)
.-.+-..+|...+
T Consensus 86 ~~~~~yglPEln~ 98 (310)
T TIGR01851 86 ADDWAYGFPELAP 98 (310)
T ss_pred CCCCeEEccccCH
Confidence 3334444565443
No 79
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=44.61 E-value=50 Score=23.78 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=34.8
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccc
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 317 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g 317 (360)
..+.++++.|+.+|-+.+.++..+..+...+.+++..| .-.++|.++ +++|
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L--------------~d~~tL~~~~i~~~ 59 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKEL--------------DDDKTLSDYGIKDG 59 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEE--------------STTSBTGGGTTSTT
T ss_pred EEEEECCCCCHHHhhhhcccccccccccceeeeeeecc--------------cCcCcHHHcCCCCC
Confidence 45667788999999999988764444444444444333 135778888 8888
No 80
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=42.66 E-value=39 Score=25.37 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=35.3
Q ss_pred CCccCCCceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccc
Q 018101 245 DCLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 317 (360)
Q Consensus 245 ~C~vC~~~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g 317 (360)
.|...|....+++++..|+.+|-+.+....++..+... ++|.. ..++ -+++|++. +.+|
T Consensus 2 ~~~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~------L~~~G--~~L~------d~~tL~~~~i~~g 61 (76)
T cd01800 2 EWKLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQK------LQYEG--IFIK------DSNSLAYYNLANG 61 (76)
T ss_pred CcccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEE------EEECC--EEcC------CCCcHHHcCCCCC
Confidence 34444555567788889999999999876532222222 33321 1121 24678888 8888
No 81
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.31 E-value=2.1e+02 Score=25.85 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=31.5
Q ss_pred hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcccC
Q 018101 37 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 89 (360)
Q Consensus 37 ~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt~ 89 (360)
.+.+.++++||.|+|+.+.-..+-..|. ..++|+-.++--
T Consensus 64 ~~dl~~~~lVi~at~d~~ln~~i~~~a~-------------~~~ilvn~~d~~ 103 (205)
T TIGR01470 64 ADILEGAFLVIAATDDEELNRRVAHAAR-------------ARGVPVNVVDDP 103 (205)
T ss_pred HHHhCCcEEEEECCCCHHHHHHHHHHHH-------------HcCCEEEECCCc
Confidence 4557899999999999988788888887 678887655543
No 82
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=40.99 E-value=36 Score=26.25 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=39.3
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEec-CCCChhHhhhccCCCchHHh-hcccccceeeeccccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQ-APPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTG 329 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~-~~~~~~~~~~~~L~k~l~el-v~~g~~~~l~~~~~~~ 329 (360)
+....++..+|+++|-..|.... ++.+... .|+.. ...+..-..-.+-.++|..+ +++| .++ .
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~--Gi~~~~m-----~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg--~~i------~ 79 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLT--GIPPSDM-----RLQLKSDKDDSKIEELDDDDATLGSYGIKDG--MRI------H 79 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHH--TS-TTTE-----EEEEE-TSSSSEEEESSGSSSBCCHHT-STT--EEE------E
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh--CCCcccE-----EEEEEecCCCccccccCCCccEeecCCCCCC--CEE------E
Confidence 45566777899999999998765 4444332 22222 11110001112457889999 9999 788 7
Q ss_pred cccCCc
Q 018101 330 QSDKKT 335 (360)
Q Consensus 330 v~d~~~ 335 (360)
|.|...
T Consensus 80 V~D~~p 85 (87)
T PF14560_consen 80 VVDTNP 85 (87)
T ss_dssp EEE-T-
T ss_pred EEeCCC
Confidence 777653
No 83
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=39.53 E-value=54 Score=27.61 Aligned_cols=44 Identities=30% Similarity=0.244 Sum_probs=32.5
Q ss_pred cCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhc-cCCcEEEEc
Q 018101 4 VGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFY-NDFNIIVLG 49 (360)
Q Consensus 4 IGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~-~~~DvVi~a 49 (360)
+...-.+.|++.+++.... +++.+..++.+.+.. + .+||+|+..
T Consensus 36 ~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~-~~~~~D~I~~~ 80 (152)
T PF13847_consen 36 ISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQE-LEEKFDIIISN 80 (152)
T ss_dssp SSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGC-SSTTEEEEEEE
T ss_pred CcHHHHHHhhccccccccc-ccceEEeehhccccc-cCCCeeEEEEc
Confidence 3344456677777777666 899999999886544 4 699999986
No 84
>PRK10637 cysG siroheme synthase; Provisional
Probab=38.44 E-value=1.1e+02 Score=31.44 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHHHhh-CCCceEEEEeccCCC-----------------cchhhccCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 11 VAAKRVMER-VSGVNIVPHFCRIED-----------------KDISFYNDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 11 vaa~~l~~~-Np~v~I~~~~~~i~~-----------------~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
||.++++.+ .-+.+|+.+...+.+ +..+.++++++|+.|+|+.+.-..|-+.|.
T Consensus 23 vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~ 94 (457)
T PRK10637 23 VAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQRVSEAAE 94 (457)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhHHHHHHHH
Confidence 556655554 335667666544431 234567899999999999998888888887
No 85
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=36.43 E-value=1.2e+02 Score=22.08 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=33.2
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
...+.++++.|+++|.+.+.++.++ .+ +...|+... ..++ -+++|++. +++| ..+
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~g~--~~-----~~qrL~~~g-~~L~------d~~tl~~~~i~~g--~~i 67 (76)
T cd01806 12 EIEIDIEPTDKVERIKERVEEKEGI--PP-----QQQRLIYSG-KQMN------DDKTAADYKLEGG--SVL 67 (76)
T ss_pred EEEEEECCCCCHHHHHHHHhHhhCC--Ch-----hhEEEEECC-eEcc------CCCCHHHcCCCCC--CEE
Confidence 3456677889999999999876533 32 222333221 1121 24678888 8888 444
No 86
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=33.24 E-value=59 Score=24.06 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccc
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKL 276 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~ 276 (360)
..+++++.+|++++...+.++.++
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gi 35 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGI 35 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCC
Confidence 456778889999999999887633
No 87
>smart00455 RBD Raf-like Ras-binding domain.
Probab=30.51 E-value=56 Score=24.45 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=22.7
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCcccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAK 280 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~ 280 (360)
...+.+.+.+|++|.++.+++++++..+.
T Consensus 11 ~~~V~vrpg~tl~e~L~~~~~kr~l~~~~ 39 (70)
T smart00455 11 RTVVKVRPGKTVRDALAKALKKRGLNPEC 39 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCHHH
Confidence 34667788999999999999998554443
No 88
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=30.00 E-value=1.7e+02 Score=28.58 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=48.8
Q ss_pred HHhhCCCceEEEEeccCCC--c-chhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEccc-CCc
Q 018101 16 VMERVSGVNIVPHFCRIED--K-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT-EGF 91 (360)
Q Consensus 16 l~~~Np~v~I~~~~~~i~~--~-~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt-~G~ 91 (360)
+.+..|++++.....+-.. . ..+.+++.|+||.|+.+-.++.|+-++. +.+..+||-+. ..+
T Consensus 21 lL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~--------------~~g~~VIDlSadfRl 86 (313)
T PRK11863 21 RLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALID--------------NPATRVIDASTAHRT 86 (313)
T ss_pred HHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHH--------------hCCCEEEECChhhhc
Confidence 3444688988887665322 1 2445678999999999999999998876 45778887653 233
Q ss_pred ceEEEEEeCCCC
Q 018101 92 KGHARVIIPGVT 103 (360)
Q Consensus 92 ~G~v~vi~p~~t 103 (360)
.-.+-..+|...
T Consensus 87 ~~~~~yglPEvn 98 (313)
T PRK11863 87 APGWVYGFPELA 98 (313)
T ss_pred CCCCeEEcCccC
Confidence 323333455543
No 89
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=29.45 E-value=1e+02 Score=24.02 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcC
Q 018101 9 AEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGL 50 (360)
Q Consensus 9 a~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~ 50 (360)
.+.|.+++.+....-+|+.+..++ ....++..+||+|+...
T Consensus 38 ~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 38 LEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 456666666666778888999888 55567778899999876
No 90
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=28.66 E-value=80 Score=23.40 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=18.2
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCcccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAK 280 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~ 280 (360)
..++.+.+..|+.|+++..++++ +++.
T Consensus 8 r~~vkvtp~~~l~~VL~eac~k~--~l~~ 34 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEACKKF--GLDP 34 (65)
T ss_dssp EEEE---TTSBHHHHHHHHHHHT--T--G
T ss_pred EEEEEECCCCCHHHHHHHHHHHc--CCCc
Confidence 45666778899999999999987 5554
No 91
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.55 E-value=3.9e+02 Score=23.03 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=22.2
Q ss_pred hhhccCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 37 ISFYNDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 37 ~~f~~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
.+.+.++|+|+.|+|+.+.-..+-..|.
T Consensus 65 ~~dl~~a~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 65 NDDIKDAHLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred hhcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 3457889999999999987776666665
No 92
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=26.33 E-value=96 Score=22.97 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=19.1
Q ss_pred CceEEEeCCCCCHHHHHHHHhcCc
Q 018101 251 PGVLIELDTSVTLEKFINLLEEHP 274 (360)
Q Consensus 251 ~~~~~~~~~~~Tl~~li~~l~~~~ 274 (360)
....+++++..|+.++-+.+.++.
T Consensus 9 ~~~~l~v~~~~TV~~lK~~I~~~~ 32 (70)
T cd01794 9 KDVKLSVSSKDTVGQLKKQLQAAE 32 (70)
T ss_pred CEEEEEECCcChHHHHHHHHHHHh
Confidence 345677888899999999998765
No 93
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=25.11 E-value=95 Score=22.60 Aligned_cols=52 Identities=6% Similarity=0.175 Sum_probs=32.4
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 317 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g 317 (360)
...++++++.|++++-+.+.++.++..+. ..|+.... .++ -+++|++. +++|
T Consensus 10 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~-------q~Li~~G~-~L~------d~~~l~~~~i~~~ 62 (70)
T cd01798 10 TFPVEVDPDTDIKQLKEVVAKRQGVPPDQ-------LRVIFAGK-ELR------NTTTIQECDLGQQ 62 (70)
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCHHH-------eEEEECCe-ECC------CCCcHHHcCCCCC
Confidence 45667888899999999998875332222 23332221 122 24678888 8777
No 94
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=25.02 E-value=1e+02 Score=22.79 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=32.6
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 317 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g 317 (360)
...++++++.|++++.+.+.++.++..+ ...|+..+ ..++ -+++|++. +++|
T Consensus 12 ~~~l~v~~~~tV~~lK~~i~~~~gi~~~-------~q~L~~~G-~~L~------d~~~L~~~~i~~~ 64 (74)
T cd01807 12 ECSLQVSEKESVSTLKKLVSEHLNVPEE-------QQRLLFKG-KALA------DDKRLSDYSIGPN 64 (74)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHH-------HeEEEECC-EECC------CCCCHHHCCCCCC
Confidence 3456778889999999999887633222 23333322 1122 24678888 8888
No 95
>PRK04148 hypothetical protein; Provisional
Probab=24.30 E-value=2.7e+02 Score=23.71 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=33.1
Q ss_pred EEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 25 IVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 25 I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
+.+..+++-+-+.++++++|+|....=..+-...+-+++.
T Consensus 60 ~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~ 99 (134)
T PRK04148 60 LNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAK 99 (134)
T ss_pred CeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHH
Confidence 4555566655668999999999999999999999999998
No 96
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=23.57 E-value=1.7e+02 Score=21.95 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=35.3
Q ss_pred HHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 10 EVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 10 ~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
+-.-+.|+.+.|.+.++.... ..|+ +..+++.+--+--.|...|+.|-
T Consensus 12 EY~eEvIRNRyPelsi~si~d------~~f~-~~~i~i~GPle~l~~FM~nEYCd 59 (75)
T PF05798_consen 12 EYTEEVIRNRYPELSITSIQD------SKFC-SIQIVIEGPLEDLTRFMANEYCD 59 (75)
T ss_pred HhHHHHHHccCCceEEEEeec------CCcc-eEEEEEeccHHHHHHHHHHHhcc
Confidence 445678899999999988764 2333 56788877555557888999984
No 97
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=23.17 E-value=1e+02 Score=22.78 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=31.1
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccc
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 317 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g 317 (360)
..++++++.|+.++-+.+..+.++..+. ..|+.... .++ -.++|++. ++++
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~~~-------q~Li~~Gk-~L~------D~~tL~~~~i~~~ 62 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDVED-------QVLLLAGV-PLE------DDATLGQCGVEEL 62 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCHHH-------EEEEECCe-ECC------CCCCHHHcCCCCC
Confidence 4567788899999999998775332222 23332221 122 24677887 7777
No 98
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=22.98 E-value=3.8e+02 Score=25.42 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCceEEEEecc-CCCcc--hhh----ccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCC
Q 018101 9 AEVAAKRVMERVSGVNIVPHFCR-IEDKD--ISF----YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIK 81 (360)
Q Consensus 9 a~vaa~~l~~~Np~v~I~~~~~~-i~~~~--~~f----~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~i 81 (360)
|+..++++....|+++++.+.-. |.+.. .+. -++-.+|+-.+=+.+.|.++.+.|. ..++
T Consensus 12 Ae~v~~A~l~QF~~~~~~~~~~p~I~~~~~~~~il~~i~~~~~iV~~Tlv~~~lr~~l~~~~~-------------~~~i 78 (255)
T PF03618_consen 12 AETVARAALAQFPDVEFEIHRFPFIRTEEQLDEILEEIKEENAIVFYTLVDPELREYLEEFCR-------------EHGI 78 (255)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCcCCHHHHHHHHHHHhccCCEEEEeCCCHHHHHHHHHHHH-------------hcCC
Confidence 45566666667788877665543 43321 122 2245699999999999999999998 8899
Q ss_pred cEEEc
Q 018101 82 PMVDG 86 (360)
Q Consensus 82 PlI~~ 86 (360)
|.+|.
T Consensus 79 ~~~Dl 83 (255)
T PF03618_consen 79 PCVDL 83 (255)
T ss_pred CEEec
Confidence 99986
No 99
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=22.45 E-value=1.3e+02 Score=22.72 Aligned_cols=26 Identities=4% Similarity=0.024 Sum_probs=20.6
Q ss_pred CCCceEEEeCCCCCHHHHHHHHhcCc
Q 018101 249 CGPGVLIELDTSVTLEKFINLLEEHP 274 (360)
Q Consensus 249 C~~~~~~~~~~~~Tl~~li~~l~~~~ 274 (360)
|+....+++++.+|++++-+.+.++.
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~ 36 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDY 36 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHH
Confidence 44445677888999999999998775
No 100
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=22.12 E-value=1.2e+02 Score=22.40 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=31.5
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 317 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g 317 (360)
...++++++.|+.++.+.+..+.++..+. ..|+... ..|+ -.++|++. ++++
T Consensus 10 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-------q~L~~~G-~~L~------D~~tL~~~~i~~~ 62 (74)
T cd01810 10 SSIYEVQLTQTVATLKQQVSQRERVQADQ-------FWLSFEG-RPME------DEHPLGEYGLKPG 62 (74)
T ss_pred EEEEEECCcChHHHHHHHHHHHhCCCHHH-------eEEEECC-EECC------CCCCHHHcCCCCC
Confidence 34567888899999999998765332222 2333221 1122 23678888 7777
No 101
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=22.05 E-value=84 Score=23.50 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=20.7
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCcccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAK 280 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~ 280 (360)
...+.+.+.+|++|.+..+++++.+..+.
T Consensus 12 ~t~V~vrpg~ti~d~L~~~~~kr~L~~~~ 40 (71)
T PF02196_consen 12 RTVVQVRPGMTIRDALSKACKKRGLNPEC 40 (71)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHTTT--CCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCHHH
Confidence 44566778899999999999998554443
No 102
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=22.05 E-value=2.6e+02 Score=22.72 Aligned_cols=55 Identities=15% Similarity=-0.023 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCceEEEEeccCCCcchh--hccCCcEEEEcCCCHHHHHHHHHH
Q 018101 8 KAEVAAKRVMERVSGVNIVPHFCRIEDKDIS--FYNDFNIIVLGLDSIEARSYINAV 62 (360)
Q Consensus 8 Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~--f~~~~DvVi~a~Dn~~aR~~iN~~ 62 (360)
.+...++.+++++|++.|..--...+..... ....+|.|+.+--.......++.+
T Consensus 54 ~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 54 EALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred HHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 4667788999999998887744444333333 346799999885444444555543
No 103
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.89 E-value=1.1e+02 Score=23.08 Aligned_cols=27 Identities=4% Similarity=0.122 Sum_probs=21.4
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQL 278 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l 278 (360)
...+.+.+.+|++|.++.++++.++..
T Consensus 11 ~t~V~vrpg~ti~d~L~~~c~kr~l~~ 37 (72)
T cd01760 11 RTVVPVRPGMSVRDVLAKACKKRGLNP 37 (72)
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCCH
Confidence 345677889999999999999985533
No 104
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=20.78 E-value=4.3e+02 Score=20.84 Aligned_cols=53 Identities=13% Similarity=0.302 Sum_probs=35.6
Q ss_pred HHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCC-HHHHHHHHHHHh
Q 018101 11 VAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDS-IEARSYINAVAC 64 (360)
Q Consensus 11 vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn-~~aR~~iN~~c~ 64 (360)
-..+.+++++|++++..+-......... -++.|+++..-+. .....++..+..
T Consensus 8 ~l~~~i~~~~~~~~v~~fGS~~~g~~~~-~SDiDl~i~~~~~~~~~~~~l~~l~~ 61 (114)
T cd05402 8 RLQELIKEWFPGAKLYPFGSYVTGLGLP-GSDIDLCLLGPNHRVDREDFLRKLAK 61 (114)
T ss_pred HHHHHHHHHCCCCEEEEecccccCCCCC-CCCeeEEEEeCCCCccHHHHHHHHHH
Confidence 3456677889999999887766654321 3578999988765 444555555554
No 105
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=20.57 E-value=1.3e+02 Score=20.73 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=17.8
Q ss_pred eEEEeCCCCCHHHHHHHHhcCc
Q 018101 253 VLIELDTSVTLEKFINLLEEHP 274 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~ 274 (360)
..+.++++.|+.+|.+.+.++.
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~ 33 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELT 33 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHH
Confidence 3566777889999999998765
No 106
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.13 E-value=1.4e+02 Score=28.12 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=34.1
Q ss_pred eEEEEeccC-CCcc-hhhcc--CCcEEEEcCCCHHH--HHHHHHHHhhchhcccCCCccccCCCcEE
Q 018101 24 NIVPHFCRI-EDKD-ISFYN--DFNIIVLGLDSIEA--RSYINAVACSFLEYETDDKPREETIKPMV 84 (360)
Q Consensus 24 ~I~~~~~~i-~~~~-~~f~~--~~DvVi~a~Dn~~a--R~~iN~~c~~~~~~~~~~~~~~~~~iPlI 84 (360)
.+..+.+++ +... .+|++ ++++||||+--+.+ ...+-++|. +.++|++
T Consensus 43 ~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~-------------~~~ipyi 96 (248)
T PRK08057 43 PGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACR-------------ALGIPYL 96 (248)
T ss_pred CceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHH-------------HhCCcEE
Confidence 344555565 3223 56775 78999999999865 457778888 7889987
Done!