Query 018101
Match_columns 360
No_of_seqs 299 out of 2099
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tt5_B Ubiquitin-activating en 100.0 4.7E-68 1.6E-72 531.9 23.1 337 1-346 88-433 (434)
2 1y8q_B Anthracycline-, ubiquit 100.0 9.6E-64 3.3E-68 517.8 29.0 319 1-347 65-536 (640)
3 2nvu_B Maltose binding protein 100.0 9E-63 3.1E-67 529.0 28.3 337 1-346 459-804 (805)
4 3cmm_A Ubiquitin-activating en 100.0 2.9E-57 1E-61 491.4 22.3 297 1-317 478-980 (1015)
5 1y8q_A Ubiquitin-like 1 activa 100.0 9.5E-31 3.2E-35 255.3 17.8 223 1-240 84-343 (346)
6 3h8v_A Ubiquitin-like modifier 100.0 7.2E-30 2.5E-34 243.1 15.0 173 1-251 83-273 (292)
7 1zud_1 Adenylyltransferase THI 99.9 3E-27 1E-31 220.9 15.0 167 2-251 77-245 (251)
8 1jw9_B Molybdopterin biosynthe 99.9 4.1E-26 1.4E-30 212.9 15.3 168 1-251 79-249 (249)
9 3h5n_A MCCB protein; ubiquitin 99.9 4.9E-26 1.7E-30 222.6 15.9 179 2-251 167-351 (353)
10 3rui_A Ubiquitin-like modifier 99.9 2.5E-25 8.7E-30 215.3 13.5 165 2-251 83-284 (340)
11 4gsl_A Ubiquitin-like modifier 99.9 9.8E-24 3.4E-28 216.7 13.3 165 2-251 375-576 (615)
12 1tt5_A APPBP1, amyloid protein 99.9 1.7E-22 5.8E-27 206.9 15.1 117 2-136 81-200 (531)
13 3vh1_A Ubiquitin-like modifier 99.9 2.1E-22 7.3E-27 206.7 13.8 172 1-251 375-577 (598)
14 3cmm_A Ubiquitin-activating en 99.8 1.5E-20 5E-25 204.4 12.3 211 2-234 76-389 (1015)
15 1z7l_A Ubiquitin-activating en 99.7 2.2E-18 7.7E-23 162.2 3.9 44 149-192 231-276 (276)
16 1y8x_B Ubiquitin-activating en 99.7 4.7E-17 1.6E-21 129.7 5.1 91 248-346 1-97 (98)
17 3onh_A Ubiquitin-activating en 97.1 0.0003 1E-08 57.8 3.9 61 260-336 19-82 (127)
18 1z7l_A Ubiquitin-activating en 92.1 0.11 3.9E-06 48.3 4.2 31 148-178 135-165 (276)
19 2pjh_A Protein NPL4, nuclear p 70.3 1.8 6.1E-05 32.3 1.7 59 253-322 16-75 (80)
20 4f3y_A DHPR, dihydrodipicolina 51.7 39 0.0013 30.8 7.5 40 37-91 68-107 (272)
21 3ijp_A DHPR, dihydrodipicolina 47.8 16 0.00054 33.9 4.2 57 20-91 44-122 (288)
22 2bwf_A Ubiquitin-like protein 47.6 17 0.00059 25.6 3.6 54 253-322 16-70 (77)
23 3a4r_A Nfatc2-interacting prot 41.0 44 0.0015 24.3 5.0 55 253-323 21-76 (79)
24 2klc_A Ubiquilin-1; ubiquitin- 38.9 38 0.0013 25.8 4.5 54 253-322 37-91 (101)
25 3phx_B Ubiquitin-like protein 38.6 28 0.00095 24.8 3.5 51 253-317 17-68 (79)
26 3v6c_B Ubiquitin; structural g 38.3 20 0.00068 26.6 2.7 54 253-322 30-84 (91)
27 1hym_A CMTI-V, hydrolyzed cucu 38.2 37 0.0013 22.4 3.6 26 4-30 14-39 (45)
28 1v5o_A 1700011N24RIK protein; 37.2 72 0.0025 24.1 5.9 55 253-322 24-79 (102)
29 1wjn_A Tubulin-folding protein 36.8 94 0.0032 23.1 6.5 67 252-334 24-93 (97)
30 1p9l_A Dihydrodipicolinate red 35.4 78 0.0027 28.3 6.7 57 19-91 22-79 (245)
31 2kzr_A Ubiquitin thioesterase 34.9 23 0.00077 26.1 2.5 62 255-334 14-78 (86)
32 3dfz_A SIRC, precorrin-2 dehyd 30.3 1.1E+02 0.0036 27.0 6.6 28 36-63 85-112 (223)
33 1wf9_A NPL4 family protein; be 29.4 58 0.002 25.0 4.2 60 254-322 20-89 (107)
34 2kjr_A CG11242; UBL, ubiquitin 28.0 1E+02 0.0034 23.2 5.3 61 252-322 29-90 (95)
35 4b6w_A Tubulin-specific chaper 27.4 88 0.003 23.1 4.7 62 252-322 16-78 (86)
36 2kj6_A Tubulin folding cofacto 27.3 81 0.0028 23.9 4.6 57 252-322 28-90 (97)
37 2kd0_A LRR repeats and ubiquit 26.5 47 0.0016 24.2 3.1 54 253-322 24-78 (85)
38 3abi_A Putative uncharacterize 24.9 97 0.0033 28.9 5.7 37 37-87 72-108 (365)
39 1dih_A Dihydrodipicolinate red 24.7 84 0.0029 28.4 5.0 40 37-91 67-106 (273)
40 3qy9_A DHPR, dihydrodipicolina 24.2 1.8E+02 0.0062 25.8 7.1 59 13-91 19-86 (243)
41 2wyq_A HHR23A, UV excision rep 23.7 83 0.0028 22.4 4.0 56 253-322 18-75 (85)
42 2al3_A TUG long isoform; TUG U 23.5 76 0.0026 24.1 3.7 25 252-276 21-45 (90)
43 2d07_B Ubiquitin-like protein 22.8 83 0.0028 23.5 3.9 55 252-322 29-84 (93)
44 1wxv_A BAG-family molecular ch 22.7 1.4E+02 0.0049 21.6 5.2 54 254-322 20-79 (92)
45 2r00_A Aspartate-semialdehyde 22.7 1.2E+02 0.004 28.3 5.8 60 15-88 22-97 (336)
46 2io1_B Small ubiquitin-related 22.2 78 0.0027 23.8 3.6 55 252-322 19-74 (94)
47 3ic5_A Putative saccharopine d 21.9 1.1E+02 0.0039 22.3 4.7 46 28-87 53-100 (118)
48 2io0_B Small ubiquitin-related 21.7 73 0.0025 23.9 3.3 55 252-322 17-72 (91)
49 2bps_A YUKD protein; ubiquitin 21.5 1.1E+02 0.0038 22.6 4.2 57 253-323 19-79 (81)
50 3tz6_A Aspartate-semialdehyde 20.6 1.4E+02 0.0049 28.0 5.9 60 15-88 20-95 (344)
51 2daj_A KIAA0977 protein, COBL- 20.5 68 0.0023 24.2 2.8 51 255-316 25-76 (91)
52 3n3k_B Ubiquitin; hydrolase, p 20.2 65 0.0022 22.9 2.7 22 253-274 16-37 (85)
53 1cq4_A Protein (serine protein 20.1 1.1E+02 0.0039 20.0 3.6 26 4-30 9-34 (47)
No 1
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=100.00 E-value=4.7e-68 Score=531.93 Aligned_cols=337 Identities=45% Similarity=0.784 Sum_probs=298.8
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++|||++||++|+++++++||+++|+++..++.+.+.++++++|+||+|+||+++|+|+|++|+.+.++.+ |.+...++
T Consensus 88 ~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~-g~~~~~~~ 166 (434)
T 1tt5_B 88 PKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED-GVLDPSSI 166 (434)
T ss_dssp GGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSS-SCBCGGGC
T ss_pred hhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccc-cccccccC
Confidence 36899999999999999999999999999999887789999999999999999999999999986555533 55555679
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCC---CCCCCCCh
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG---KSFDPDDP 157 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~---~~fd~dd~ 157 (360)
+|||++|+.|+.||++++.|+.++||+|.++..|+++.+|.||++++|+.|+|||+||+.+.|+..++. ..||+|++
T Consensus 167 iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~~~~~~~~~d~d~~ 246 (434)
T 1tt5_B 167 VPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDP 246 (434)
T ss_dssp CCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTCTTCCCCTTCH
T ss_pred CcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhcccccccccCCCcH
Confidence 999999999999999999999999999998777788899999999999999999999999999887743 58999999
Q ss_pred hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeee
Q 018101 158 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKV 237 (360)
Q Consensus 158 ~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~ 237 (360)
+|++|+++.|++||..|||.+.+++.++|++++|+|||+||+|||||++++|++|+|+|.++++++++.|++..+.+.+.
T Consensus 247 ~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~~l~~d~~~~~~~~~ 326 (434)
T 1tt5_B 247 EHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYT 326 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCSEEEEECSBSCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCceEEEEcCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999998887778
Q ss_pred eecccCCCCccCCC-ceEEEeCCCCCHHHHHHHHhcCccccceeceeee----CCcEEEecCCCChhHhhhccCCCchHH
Q 018101 238 TEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPPVLEEMTRSNLSLPLYD 312 (360)
Q Consensus 238 ~~~~~~~~C~vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~----~~~~LY~~~~~~~~~~~~~~L~k~l~e 312 (360)
+.++|+|+|++|+. |..+.+++++||++|++.+++++.++++.|+|++ ++++||+++++++++.+++||.|+|+|
T Consensus 327 ~~~~~~~~C~vC~~~~~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~ 406 (434)
T 1tt5_B 327 FEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKE 406 (434)
T ss_dssp ECCCCCTTCTTTCSSCBCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC----
T ss_pred EeccCCCCCCccCCCCceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHH
Confidence 88899999999999 8888888889999999999999888999999988 589999999888998899999999999
Q ss_pred h-hcccccceeeeccccccccCCcceeEEEEEEEe
Q 018101 313 L-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR 346 (360)
Q Consensus 313 l-v~~g~~~~l~~~~~~~v~d~~~~~~~~~~~~~~ 346 (360)
| +.+| +++ .|+|+..+.+++++|+|.
T Consensus 407 l~~~~g--~~~------~v~d~~~~~~~~~~~~~~ 433 (434)
T 1tt5_B 407 LGLVDG--QEL------AVADVTTPQTVLFKLHFT 433 (434)
T ss_dssp -CCCSS--CCE------ECCCTTCSSCCEEC----
T ss_pred cCCCCC--CEE------EEECCCCcccEEEEEEec
Confidence 9 9999 899 999999999999999986
No 2
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=100.00 E-value=9.6e-64 Score=517.81 Aligned_cols=319 Identities=28% Similarity=0.436 Sum_probs=273.8
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCc--chhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~--~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
++|||++||++|+++|+++||+++|+++..++.+. +.+|++++|+||+|+||+++|+++|++|+ .
T Consensus 65 ~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~-------------~ 131 (640)
T 1y8q_B 65 KKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL-------------A 131 (640)
T ss_dssp GGGTTSBHHHHHHHHHHTTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHH-------------H
T ss_pred hhHcChHHHHHHHHHHHHHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHH-------------H
Confidence 36899999999999999999999999999999753 47899999999999999999999999998 7
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhh-----------------
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI----------------- 141 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~----------------- 141 (360)
+++|||++|+.|+.|+++++.|+.|+||+|.. .|+++++|.||++++|+.|+|||+||+++
T Consensus 132 ~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~C~~--~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~ 209 (640)
T 1y8q_B 132 ADVPLIESGTAGYLGQVTTIKKGVTECYECHP--KPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPD 209 (640)
T ss_dssp HTCCEEEEEEETTEEEEEEECTTTSCCTTSSC--CCCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCC
T ss_pred cCCCEEEEEEecccceEEEECCCCCCCcccCC--CCCCcccceeeecCCCCchHHHHHHHHHHHHHHhCCcchhhhhccc
Confidence 89999999999999999999999999999976 36778999999999999999999999864
Q ss_pred --------------------------------hhh------------------------------hh-------------
Q 018101 142 --------------------------------KWD------------------------------EV------------- 146 (360)
Q Consensus 142 --------------------------------~w~------------------------------~~------------- 146 (360)
.|+ ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW~~kr~P~pl~fd~~~~ 289 (640)
T 1y8q_B 210 RADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQS 289 (640)
T ss_dssp TTCTTSCCC---------------------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTCGGGCSSSCCCCCCCHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhHHHHHhhhhHHHhHhHHHHHHHHHHHhhHHHHHHhCcccccCCCCCCCcccCcccc
Confidence 111 00
Q ss_pred -------------------------------------------------cCCCCCCCCChhHHHHHHHHHHHHHHHcCCC
Q 018101 147 -------------------------------------------------HSGKSFDPDDPEHMQWVYSEAVKRAELFGIP 177 (360)
Q Consensus 147 -------------------------------------------------~~~~~fd~dd~~~l~fi~~~anlra~~~~I~ 177 (360)
..++.|||||+.||+||+++||+||++|||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~FdKDDd~h~dFV~aaaNlRA~~y~I~ 369 (640)
T 1y8q_B 290 QGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMN 369 (640)
T ss_dssp C--------------CCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHTCTTCCCCCCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccccccccCCChhhhcChhhhhhhHHHHHHHHHHHhhhcccCCCcccCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 1245799999999999999999999999999
Q ss_pred CcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCC-cccceeee--ecccCceeeeeecccCCCCccCC-C-c
Q 018101 178 GVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK-TLSNYLTY--NGVAGLHIKVTEFVKDKDCLVCG-P-G 252 (360)
Q Consensus 178 ~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~-~l~n~~~~--~~~~~~~~~~~~~~~~~~C~vC~-~-~ 252 (360)
+.+++++++||||||||||||||||||++++|++|++++..+ ..+.|+++ .+..+.+.+..+.+++|+|++|+ . .
T Consensus 370 ~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~ 449 (640)
T 1y8q_B 370 MKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPE 449 (640)
T ss_dssp CCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCE
T ss_pred cCCHHHHHHHhCCcccchhhHHHHHHHHHHHHHHHHHhccHHhhhhhheeeccCCCCcEEeecccCCCCCCCcccCCccE
Confidence 999999999999999999999999999999999999997643 23455554 33344666677788999999995 3 2
Q ss_pred eEEEeCC-CCCHHHHHHHHhcCccccceeceeee---CCcEEEecCCCChhHhhhccCCCchHHh-hcccccceeeeccc
Q 018101 253 VLIELDT-SVTLEKFINLLEEHPKLQLAKASVTY---RGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGV 327 (360)
Q Consensus 253 ~~~~~~~-~~Tl~~li~~l~~~~~~~l~~~~i~~---~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l~~~~~ 327 (360)
..+.++. ++||++|++++.++ .++++.++|+. |+++||.++.+ ++++||.++|+|| +++| +++
T Consensus 450 ~~~~~~~~~~TL~~li~~~~~~-~~~l~~~~is~~~~~~~~ly~~~~~----~~~~~l~~~l~el~v~~~--~~~----- 517 (640)
T 1y8q_B 450 VTVRLNVHKVTVLTLQDKIVKE-KFAMVAPDVQIEDGKGTILISSEEG----ETEANNHKKLSEFGIRNG--SRL----- 517 (640)
T ss_dssp EEEEECTTTCBHHHHHHCCCCC-CTCCSSCEEEESSSSCCEEECSSSS----SSTTGGGSBGGGGTCCTT--CEE-----
T ss_pred EEEEEeCCCCcHHHHHHHHHHH-hhCCCCceEEEEcCCCcEEEeccch----hhHHhhhCcHHHhCccCC--cEE-----
Confidence 2334442 78999999996433 35899999999 88999987643 3667999999997 9999 899
Q ss_pred cccccCCcceeEEEEEEEec
Q 018101 328 TGQSDKKTSCLRKLRVVFRG 347 (360)
Q Consensus 328 ~~v~d~~~~~~~~~~~~~~~ 347 (360)
.|+|..++..+.+.+.|++
T Consensus 518 -~v~d~~~~~~~~i~~~~~~ 536 (640)
T 1y8q_B 518 -QADDFLQDYTLLINILHSE 536 (640)
T ss_dssp -EEEETTTTEEEEEEEEECS
T ss_pred -EecCCCccEEEEEEEEecC
Confidence 9999999888888888865
No 3
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=100.00 E-value=9e-63 Score=529.01 Aligned_cols=337 Identities=45% Similarity=0.796 Sum_probs=313.2
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++|||++||++|+++|+++||+++|+++..++.+.+.+|++++|+||+|+||+++|++||++|+.++++.+ |++...++
T Consensus 459 ~~~vg~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~-g~~~~~~~ 537 (805)
T 2nvu_B 459 PKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED-GVLDPSSI 537 (805)
T ss_dssp GGGTTSBHHHHHHHHHHHHSTTCEEEEEESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEET-TEECGGGC
T ss_pred hhhcCChHHHHHHHHHHHHCCCCEEEEEeccccccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccc-cccccccC
Confidence 36899999999999999999999999999999887789999999999999999999999999986544432 44444579
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcC---CCCCCCCCh
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHS---GKSFDPDDP 157 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~---~~~fd~dd~ 157 (360)
+|+|++|+.|+.|++++++|+.++||+|.++..|++..+|.|+++++|+.|+|||+||+.+.|+..++ ++.||+|++
T Consensus 538 ~p~i~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~d~~~~ 617 (805)
T 2nvu_B 538 VPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDP 617 (805)
T ss_dssp CCEEEEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHHCTTSTTCCCCTTCH
T ss_pred CcEEEeccccCceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhcccccCCCCcccCCCCCH
Confidence 99999999999999999999999999999876677888999999999999999999999999998774 458999999
Q ss_pred hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeee
Q 018101 158 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKV 237 (360)
Q Consensus 158 ~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~ 237 (360)
+|++||++.|++||..|||.+.+++.++|++++|+|+|+||+|||||++++|++|+|+|.+++++|++.|++..+.+.+.
T Consensus 618 ~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~~~~~~~ 697 (805)
T 2nvu_B 618 EHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYT 697 (805)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCceEEecCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999998887778
Q ss_pred eecccCCCCccCCC-ceEEEeCCCCCHHHHHHHHhcCccccceeceeee----CCcEEEecCCCChhHhhhccCCCchHH
Q 018101 238 TEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPPVLEEMTRSNLSLPLYD 312 (360)
Q Consensus 238 ~~~~~~~~C~vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~----~~~~LY~~~~~~~~~~~~~~L~k~l~e 312 (360)
+.++|+|+|++|+. |..+.+++++||++|++.|++++.++++.|+|++ ++++||+++++.+++.+++||+|+|+|
T Consensus 698 ~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~ 777 (805)
T 2nvu_B 698 FEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKE 777 (805)
T ss_dssp ECCCCCTTCTTTSCCCEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTT
T ss_pred ccCCCCCCCCeeCceeEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHH
Confidence 88899999999999 9899999889999999999999888999999988 588999999888888899999999999
Q ss_pred h-hcccccceeeeccccccccCCcceeEEEEEEEe
Q 018101 313 L-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR 346 (360)
Q Consensus 313 l-v~~g~~~~l~~~~~~~v~d~~~~~~~~~~~~~~ 346 (360)
| +++| ++| .|+|+..+.+++++|+|.
T Consensus 778 l~~~~~--~~~------~~~~~~~~~~~~~~~~~~ 804 (805)
T 2nvu_B 778 LGLVDG--QEL------AVADVTTPQTVLFKLHFT 804 (805)
T ss_dssp TTCCTT--CEE------EEECTTSSSCEEEEEEEC
T ss_pred cCCCCC--CEE------EEEcCCCCeeEEEEEEec
Confidence 9 9999 899 999999999999999996
No 4
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-57 Score=491.39 Aligned_cols=297 Identities=25% Similarity=0.383 Sum_probs=253.3
Q ss_pred CCCcCchHHHHHHHHHHhhCCCc--eEEEEeccCCC-----cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGV--NIVPHFCRIED-----KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDD 73 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v--~I~~~~~~i~~-----~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~ 73 (360)
++|||++||++|+++++++||++ +|+++..++++ ++.+|++++|+||+|+||+++|+++|++|+
T Consensus 478 ~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~--------- 548 (1015)
T 3cmm_A 478 PKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCV--------- 548 (1015)
T ss_dssp GGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHH---------
T ss_pred hhhCCCHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHH---------
Confidence 36999999999999999999999 99999999985 236899999999999999999999999998
Q ss_pred CccccCCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhh------------
Q 018101 74 KPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI------------ 141 (360)
Q Consensus 74 ~~~~~~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~------------ 141 (360)
..++|||++|+.|++|++++++|+.|+||+|..+ |+++++|.||+++||+.|+|||+||+++
T Consensus 549 ----~~~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~d--p~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~lf~~~~~~~ 622 (1015)
T 3cmm_A 549 ----FYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRD--PPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENV 622 (1015)
T ss_dssp ----HHTCCEEEEEEETTEEEEEEECTTTBCCGGGSCC--CCCCCCCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ----HcCCcEEEeCCCccccceEEEeCCCCCccCCCCC--CCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHhhhhhhh
Confidence 7789999999999999999999999999999853 6788999999999999999999999863
Q ss_pred ------------------------------------------hhhhh-----c---------------------------
Q 018101 142 ------------------------------------------KWDEV-----H--------------------------- 147 (360)
Q Consensus 142 ------------------------------------------~w~~~-----~--------------------------- 147 (360)
.|++. |
T Consensus 623 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fW~~~ 702 (1015)
T 3cmm_A 623 NMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGA 702 (1015)
T ss_dssp HHHHHCTTHHHHHHC---CCHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCSTTCBSSCTT
T ss_pred hhhccCchhHHHHHhccchhHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCcccccCC
Confidence 01100 0
Q ss_pred --------------------------------------------------------------------------------
Q 018101 148 -------------------------------------------------------------------------------- 147 (360)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (360)
T Consensus 703 kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~ki~~~~~~~~~~~~~ 782 (1015)
T 3cmm_A 703 KRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANA 782 (1015)
T ss_dssp CCCCCCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCCSSCCCCSSTTSSCC----
T ss_pred CCCCCCcccCCCCHHHHHHHHHHHHhHHHhcCCCCccccccCCHHHHHHHHhhCcCCCcCCccCceeccchhhhcccccc
Confidence
Q ss_pred -------------------------CCCCCCCCChh--HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHH
Q 018101 148 -------------------------SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNA 200 (360)
Q Consensus 148 -------------------------~~~~fd~dd~~--~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~A 200 (360)
.++.|||||+. ||+||+++||+||++|+|+..+++++|+||||||||||||||
T Consensus 783 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~~~~~k~iaG~IIPAIaTT~A 862 (1015)
T 3cmm_A 783 ANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTS 862 (1015)
T ss_dssp -----CCHHHHTTSCCGGGGTTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHH
T ss_pred cccHHHHHHHHHHhccchhcccCCCCceeeecCCCchhHHHHHHHHHHHHHHHcCCCccCHHHHHHHhCCcCccchhHHH
Confidence 13458999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCC---cccceeeeecccCceeeeeecccCCCCccCC--C-ceEEEeCCCCCHHHHHHHHhcCc
Q 018101 201 IISAACALETLKIASGCSK---TLSNYLTYNGVAGLHIKVTEFVKDKDCLVCG--P-GVLIELDTSVTLEKFINLLEEHP 274 (360)
Q Consensus 201 ivagl~~~E~lKil~~~~~---~l~n~~~~~~~~~~~~~~~~~~~~~~C~vC~--~-~~~~~~~~~~Tl~~li~~l~~~~ 274 (360)
+|||++++|++|++.|..+ ..+.|+++..+...++... .++++.|..|+ + |+++++++++||++|++.+++++
T Consensus 863 ivaGl~~lE~~K~~~~~~~~~~~kn~f~nla~~~~~~~~p~-~~~~~~~~~~~~~t~wd~~~v~~~~Tl~~li~~~~~~~ 941 (1015)
T 3cmm_A 863 LVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPI-ASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDE 941 (1015)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGCCEEEEETTTTEEEEECCC-BCCEEEETTEEEETTTCEEEEESCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhHHHhccCCceeecCCC-CCCCCCCCCCCCCeEEEEEEECCCCcHHHHHHHHHHHh
Confidence 9999999999999987422 2234555544432222121 23455688887 7 99999988999999999999876
Q ss_pred cccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHhhccc
Q 018101 275 KLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKV 317 (360)
Q Consensus 275 ~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~elv~~g 317 (360)
++++++|+.|+++||+++++. +++++||+++|+||++..
T Consensus 942 --~~~~~~i~~~~~~ly~~~~~~--~~~~~~l~~~l~~l~~~~ 980 (1015)
T 3cmm_A 942 --GLEITMLSYGVSLLYASFFPP--KKLKERLNLPITQLVKLV 980 (1015)
T ss_dssp --CCEEEEEEETTEEEEETTCCH--HHHHHHTTSBHHHHHHHH
T ss_pred --CCcceeeccCCcEEEecCCCc--hhhHHhccCCHHHHHHhh
Confidence 889999999999999998642 346679999999998765
No 5
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=99.97 E-value=9.5e-31 Score=255.33 Aligned_cols=223 Identities=17% Similarity=0.197 Sum_probs=183.4
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
++|||++||++++++|+++||+++|+++..++++...+|+++||+||+|.||+++|.++|++|+ ..+
T Consensus 84 ~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~-------------~~~ 150 (346)
T 1y8q_A 84 TGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH-------------KNS 150 (346)
T ss_dssp SSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHH-------------HTT
T ss_pred cccCcCCHHHHHHHHHHhHCCCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHH-------------HcC
Confidence 4799999999999999999999999999999887668999999999999999999999999999 789
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccC--CCCC------------------------------CC--CCCcc--cc
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIW--LFPP------------------------------QV--KFPLC--TL 124 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~------------------------------~~--~~p~C--ti 124 (360)
+|||++|+.|+.|+++++++ ..+|++|... ..|. +. ..|.| ++
T Consensus 151 ip~i~~~~~G~~G~v~~d~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 229 (346)
T 1y8q_A 151 IKFFTGDVFGYHGYTFANLG-EHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKA 229 (346)
T ss_dssp CEEEEEEEEBTEEEEEEECS-EEEEEEECC-----------------------CCCEEEEEEECCCHHHHTSCCSCSHHH
T ss_pred CCEEEEeecccEEEEEEecC-CCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeeccCHHHHhcCCchhhhh
Confidence 99999999999999999886 5778888543 1110 00 12334 33
Q ss_pred c-CCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHH
Q 018101 125 A-ETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIIS 203 (360)
Q Consensus 125 ~-~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aiva 203 (360)
+ .+++.|.|++.|.-...|...++....+.+++++++++++.|+.++..++++.. ....+++.++.++++|++|++|
T Consensus 230 ~~~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~l~pv~AiiG 307 (346)
T 1y8q_A 230 KAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPD--LLPEDFVRYCFSEMAPVCAVVG 307 (346)
T ss_dssp HHHHTTSCTHHHHHHHHHHHHHHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGG--GSCGGGGGSSCSBCHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcc--cCCHHHHHHhcCCccHHHHHHH
Confidence 1 257778899999888889888765544456789999999999999999997642 1345566777899999999999
Q ss_pred HHHHHHHHHHHccCCCcccceeeeecccCceeeeeec
Q 018101 204 AACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEF 240 (360)
Q Consensus 204 gl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~~~~ 240 (360)
|++++|++|+++|+..|++|++.||+..+... .+.+
T Consensus 308 Gi~aQEviK~it~k~~Pl~n~~~fD~~~~~~~-~~~l 343 (346)
T 1y8q_A 308 GILAQEIVKALSQRDPPHNNFFFFDGMKGNGI-VECL 343 (346)
T ss_dssp HHHHHHHHHHHHTBSCCCCSEEEEETTTTEEE-EECC
T ss_pred HHHHHHHHHHhcCCCcccccEEEEEcccccee-EEec
Confidence 99999999999999999999999999876543 4444
No 6
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=99.96 E-value=7.2e-30 Score=243.08 Aligned_cols=173 Identities=21% Similarity=0.346 Sum_probs=142.1
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCC-cc-hhhc-----------cCCcEEEEcCCCHHHHHHHHHHHhhch
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-KD-ISFY-----------NDFNIIVLGLDSIEARSYINAVACSFL 67 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~-~~-~~f~-----------~~~DvVi~a~Dn~~aR~~iN~~c~~~~ 67 (360)
++|||++||++|+++++++||+++|+++..++++ .+ ++|+ +++|+||+|+||+++|.++|++|+
T Consensus 83 ~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~--- 159 (292)
T 3h8v_A 83 PHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACN--- 159 (292)
T ss_dssp -CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHH---
T ss_pred hhhcCchHHHHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHH---
Confidence 4689999999999999999999999999999986 33 5565 689999999999999999999999
Q ss_pred hcccCCCccccCCCcEEEcccCC--cceEEEEEeCCCCCccccccCCCCCCC-CCCcccccCCCCCchhhHHHhhhhhhh
Q 018101 68 EYETDDKPREETIKPMVDGGTEG--FKGHARVIIPGVTPCFECTIWLFPPQV-KFPLCTLAETPRTAAHCIEYAHLIKWD 144 (360)
Q Consensus 68 ~~~~~~~~~~~~~iPlI~~gt~G--~~G~v~vi~p~~t~Cy~C~~~~~~~~~-~~p~Cti~~~P~~~ehcI~wa~~~~w~ 144 (360)
..++|||++|+.| +.||+++|.|+.|+||+|+++..++.. ..+.|.
T Consensus 160 ----------~~~~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~p~~~~~~~~~~~~~--------------------- 208 (292)
T 3h8v_A 160 ----------ELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLK--------------------- 208 (292)
T ss_dssp ----------HHTCCEEEEEECTTSSEEEEEEECTTTSCCTTSSSCCCCCCC----------------------------
T ss_pred ----------HhCCCEEEeeeecceeEEEEEEECCCCCCCHhhcCCccccccccccchh---------------------
Confidence 7899999999986 899999999999999999976432211 011121
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccce
Q 018101 145 EVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 224 (360)
Q Consensus 145 ~~~~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~ 224 (360)
..|+ ..++++|+.++||+++|+|++|+|+|.+++ ..+
T Consensus 209 ---------------------------------------~~gv---c~~~l~~~~g~vgslqA~EalK~L~g~g~~-~~l 245 (292)
T 3h8v_A 209 ---------------------------------------REGV---CAASLPTTMGVVAGILVQNVLKFLLNFGTV-SFY 245 (292)
T ss_dssp ---------------------------------------CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTCSCC-CSE
T ss_pred ---------------------------------------hcCc---ccCCcchHHHHHHHHHHHHHHHHHhCCCCC-CeE
Confidence 0111 123478999999999999999999998775 578
Q ss_pred eeeecccCceeeeeecccCCCCc--cCCC
Q 018101 225 LTYNGVAGLHIKVTEFVKDKDCL--VCGP 251 (360)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~C~--vC~~ 251 (360)
+.||+..+.+. ++.+.|+|+|+ +|+.
T Consensus 246 l~~D~~~~~~~-~~~~~~~p~C~~~~Cg~ 273 (292)
T 3h8v_A 246 LGYNAMQDFFP-TMSMKPNPQCDDRNCRK 273 (292)
T ss_dssp EEEETTTTBCC-EECCCCCTTCSCHHHHH
T ss_pred EEEECCCCcEE-EEecCCCcCcCccccCC
Confidence 89999887764 77899999999 9986
No 7
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=99.95 E-value=3e-27 Score=220.90 Aligned_cols=167 Identities=19% Similarity=0.352 Sum_probs=141.1
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
+|||++||++++++++++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|+.|+ ..+
T Consensus 77 ~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~-------------~~~ 143 (251)
T 1zud_1 77 EDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACV-------------ALN 143 (251)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHH-------------HTT
T ss_pred hhCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHH-------------HhC
Confidence 68999999999999999999999999999887644 6789999999999999999999999998 789
Q ss_pred CcEEEcccCCcceEEEEEeCCC-CCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChhH
Q 018101 81 KPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 159 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~-t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~~ 159 (360)
+|||++|+.|+.|++.++.|+. ++||+|.++..++. .+.|.
T Consensus 144 ~p~i~~~~~g~~G~v~~~~p~~~~~c~~cl~~~~~~~--~~~~~------------------------------------ 185 (251)
T 1zud_1 144 TPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEP--ERNCR------------------------------------ 185 (251)
T ss_dssp CCEEEEEEEBTEEEEEEECTTCTTCCHHHHCC------------------------------------------------
T ss_pred CCEEEEeccccceEEEEEccCCCCCcEEEeCCCCCCC--CCccc------------------------------------
Confidence 9999999999999999999987 79999987532211 01121
Q ss_pred HHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcccceeeeecccCceeeeee
Q 018101 160 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTE 239 (360)
Q Consensus 160 l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l~n~~~~~~~~~~~~~~~~ 239 (360)
..+.++|+++++|+++++|++|+|+|.+.++++++.||+..+.+. .+.
T Consensus 186 -------------------------------~~g~~~p~~~~~g~~~A~e~lk~l~g~~~~~~~~~~~d~~~~~~~-~~~ 233 (251)
T 1zud_1 186 -------------------------------TAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWR-SLA 233 (251)
T ss_dssp --------------------------------CCBCHHHHHHHHHHHHHHHHHHHHTCCCCCSEEEEEETTTTEEE-EEE
T ss_pred -------------------------------cCCchHHHHHHHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCEEE-EEe
Confidence 023467889999999999999999998877778888999887654 778
Q ss_pred cccCCCCccCCC
Q 018101 240 FVKDKDCLVCGP 251 (360)
Q Consensus 240 ~~~~~~C~vC~~ 251 (360)
+.++|+|++|+.
T Consensus 234 ~~~~p~C~~C~~ 245 (251)
T 1zud_1 234 LRRASGCPVCGG 245 (251)
T ss_dssp CCCCTTCTTTCC
T ss_pred cCCCcCCCccCC
Confidence 889999999996
No 8
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=99.94 E-value=4.1e-26 Score=212.92 Aligned_cols=168 Identities=21% Similarity=0.419 Sum_probs=140.4
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccC
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 79 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~ 79 (360)
++|||++|+++++++++++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|+.|+ ..
T Consensus 79 ~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~-------------~~ 145 (249)
T 1jw9_B 79 DATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCF-------------AA 145 (249)
T ss_dssp GGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHH-------------HH
T ss_pred hhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHH-------------Hc
Confidence 368999999999999999999999999998887644 6788999999999999999999999998 77
Q ss_pred CCcEEEcccCCcceEEEEEeCCC-CCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCChh
Q 018101 80 IKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPE 158 (360)
Q Consensus 80 ~iPlI~~gt~G~~G~v~vi~p~~-t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~~ 158 (360)
++|+|+++..|+.|++.++.|+. ++||+|.++..++. .+.|.
T Consensus 146 ~~p~i~~~~~g~~g~v~~~~p~~~~~c~~c~~~~~~~~--~~~c~----------------------------------- 188 (249)
T 1jw9_B 146 KVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGEN--ALTCV----------------------------------- 188 (249)
T ss_dssp TCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHTTCCC-------------------------------------------
T ss_pred CCCEEEeeeccceEEEEEEeCCCCCCceEEECCCCCcc--ccccc-----------------------------------
Confidence 89999999999999999999987 79999987532110 11121
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcc-cceeeeecccCceeee
Q 018101 159 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYNGVAGLHIKV 237 (360)
Q Consensus 159 ~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l-~n~~~~~~~~~~~~~~ 237 (360)
..+.++++++++|+++++|++|+|+|.++++ ++++.||+.++.+ ..
T Consensus 189 --------------------------------~~g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~-~~ 235 (249)
T 1jw9_B 189 --------------------------------EAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQF-RE 235 (249)
T ss_dssp ---------------------------------CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEE-EE
T ss_pred --------------------------------ccCCcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCCCEE-EE
Confidence 1245788999999999999999999988776 4678889887765 47
Q ss_pred eecccCCCCccCCC
Q 018101 238 TEFVKDKDCLVCGP 251 (360)
Q Consensus 238 ~~~~~~~~C~vC~~ 251 (360)
+.+.|+|+|++|+.
T Consensus 236 ~~~~~~~~C~~C~~ 249 (249)
T 1jw9_B 236 MKLMRNPGCEVCGQ 249 (249)
T ss_dssp EECCCCTTCTTTC-
T ss_pred EecCCCcCCCCcCc
Confidence 78889999999983
No 9
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=99.93 E-value=4.9e-26 Score=222.56 Aligned_cols=179 Identities=20% Similarity=0.260 Sum_probs=137.8
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcc--hhhccCCcEEEEcCCCHH-HHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIE-ARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~--~~f~~~~DvVi~a~Dn~~-aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+|||++||++|+++++++||+++|+++..++.+.+ .+ ++++|+||+|+||++ +|.++|++|+ .
T Consensus 167 ~diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~-------------~ 232 (353)
T 3h5n_A 167 DDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHK-VPEADIWVVSADHPFNLINWVNKYCV-------------R 232 (353)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGGGGG-SCCCSEEEECCCCSTTHHHHHHHHHH-------------H
T ss_pred HHCCChHHHHHHHHHHHHCCCCeEEEeecccCchhhhhH-hccCCEEEEecCChHHHHHHHHHHHH-------------H
Confidence 68999999999999999999999999999998754 44 899999999999999 9999999999 8
Q ss_pred CCCcEEEcccCCcceEEEEE-eCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhhhhhhhhcCCCCCCCCCh
Q 018101 79 TIKPMVDGGTEGFKGHARVI-IPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDP 157 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi-~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~~~w~~~~~~~~fd~dd~ 157 (360)
.++|||++|+.|+.|++..+ .|+.++||+|.++..+. |. . +++
T Consensus 233 ~~~p~i~~~~~g~~g~~g~~~~p~~~~C~~C~~~~~~~----~~--------~------------------------~~~ 276 (353)
T 3h5n_A 233 ANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKVVADL----YG--------S------------------------EKE 276 (353)
T ss_dssp TTCCEEEEEEETTEEEEEEEECTTTSCCTTTTC---------------------------------------------CH
T ss_pred hCCCEEEEEEeCCEEEEEEEEcCCCCCChhhcCCCcCC----Cc--------c------------------------ccc
Confidence 89999999999999998765 59999999998752100 10 0 000
Q ss_pred hHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccCCCcc--cceeeeecccCcee
Q 018101 158 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL--SNYLTYNGVAGLHI 235 (360)
Q Consensus 158 ~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~~~l--~n~~~~~~~~~~~~ 235 (360)
...+ .+.... .. .-.+.++|+++++|+++|+|++|+|+|.+++. +..+.||..+..+.
T Consensus 277 ~~~~---~c~~~~-~~----------------~~~gv~~~~~~iig~l~a~Ealk~l~g~~~~~~~g~l~~~d~~~~~~~ 336 (353)
T 3h5n_A 277 NIDH---KIKLIN-SR----------------FKPATFAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIGIWSDEIKIH 336 (353)
T ss_dssp HHHH---HHHHHH-HT----------------CCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCTTBTEEEEECSSSSCEE
T ss_pred hhhh---hhhhhc-cc----------------ccCCchhhHHHHHHHHHHHHHHHHhcCCCCcccCCeEEEEECCCCEEE
Confidence 0000 000000 00 01356889999999999999999999977663 56788888876654
Q ss_pred eeeecccCCCCccCCC
Q 018101 236 KVTEFVKDKDCLVCGP 251 (360)
Q Consensus 236 ~~~~~~~~~~C~vC~~ 251 (360)
.+.+.|+|+|++||.
T Consensus 337 -~~~~~~~p~C~~Cg~ 351 (353)
T 3h5n_A 337 -SQNMGRSPVCSVCGN 351 (353)
T ss_dssp -EEECCCCTTCTTTC-
T ss_pred -EEccCCCcCCCCCCC
Confidence 778899999999985
No 10
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=99.92 E-value=2.5e-25 Score=215.30 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=132.7
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCC---------------C-cchhhccCCcEEEEcCCCHHHHHHHHHHHhh
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---------------D-KDISFYNDFNIIVLGLDSIEARSYINAVACS 65 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~---------------~-~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~ 65 (360)
+|||++||++|+++++++||+++|+++..+|. . ...++++++|+|++|+||+++|.++|++|+
T Consensus 83 ~diG~~Ka~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~- 161 (340)
T 3rui_A 83 EDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSN- 161 (340)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHH-
T ss_pred hhcChHHHHHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHH-
Confidence 68999999999999999999999999997662 1 125789999999999999999999999999
Q ss_pred chhcccCCCccccCCCcEEEcccCCcceEEEEEe-------CCCCCccccccCCCCCCCCC-----CcccccCCCCCchh
Q 018101 66 FLEYETDDKPREETIKPMVDGGTEGFKGHARVII-------PGVTPCFECTIWLFPPQVKF-----PLCTLAETPRTAAH 133 (360)
Q Consensus 66 ~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~-------p~~t~Cy~C~~~~~~~~~~~-----p~Cti~~~P~~~eh 133 (360)
.+++|+|+++ .|+.||+.++. |+.++||+|..+..|..... +.|+
T Consensus 162 ------------~~~~plI~aa-~G~~G~l~v~~g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~t~~~~c~---------- 218 (340)
T 3rui_A 162 ------------IENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMST---------- 218 (340)
T ss_dssp ------------HTTCEEEEEE-ECSSEEEEEECCCCCSSCCCCBCCGGGGSSSCCCCCTTTCCCGGGGG----------
T ss_pred ------------HcCCcEEEee-ecceEEEEEeecccccCCCCCCCeeeeCCCCCCcccccccccCCCcc----------
Confidence 8899999987 89999998874 56789999997643322110 1121
Q ss_pred hHHHhhhhhhhhhcCCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHH
Q 018101 134 CIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 213 (360)
Q Consensus 134 cI~wa~~~~w~~~~~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKi 213 (360)
.++|+.++||+++|+|++|+
T Consensus 219 ------------------------------------------------------------v~~p~vg~igs~qA~E~lk~ 238 (340)
T 3rui_A 219 ------------------------------------------------------------VTRPGVAMMASSLAVELMTS 238 (340)
T ss_dssp ------------------------------------------------------------CSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------eecchHHHHHHHHHHHHHHH
Confidence 26889999999999999999
Q ss_pred HccCCCcc------cce-eeeecccCceeeeeecc--cCCCCccCCC
Q 018101 214 ASGCSKTL------SNY-LTYNGVAGLHIKVTEFV--KDKDCLVCGP 251 (360)
Q Consensus 214 l~~~~~~l------~n~-~~~~~~~~~~~~~~~~~--~~~~C~vC~~ 251 (360)
|++.+... ... +.|++....+. .+.+. ++|+|++||.
T Consensus 239 l~~~~~~~~~~~~~G~l~~~~d~~~~~f~-~~~l~~~~~~~C~~C~~ 284 (340)
T 3rui_A 239 LLQTKYSGSETTVLGDIPHQIRGFLHNFS-ILKLETPAYEHCPACSP 284 (340)
T ss_dssp HTSCCCTTSSEETTEECCSEEEEETTTTE-EEEECCBCCTTCTTTCH
T ss_pred HhCCCCCccccCccCcccEEEecCcCCce-EEEecCCCCCCCCCCCH
Confidence 99976543 222 67888776664 55555 5899999996
No 11
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=99.90 E-value=9.8e-24 Score=216.74 Aligned_cols=165 Identities=20% Similarity=0.253 Sum_probs=131.4
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCC---------------C-cchhhccCCcEEEEcCCCHHHHHHHHHHHhh
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---------------D-KDISFYNDFNIIVLGLDSIEARSYINAVACS 65 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~---------------~-~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~ 65 (360)
+|||++||++|+++++++||+++|+++..+|. . ...++++++|+||+|+||+++|.++|++|+
T Consensus 375 ~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~- 453 (615)
T 4gsl_A 375 EDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSN- 453 (615)
T ss_dssp GGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHH-
T ss_pred hhcChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHH-
Confidence 68999999999999999999999999987661 1 125788999999999999999999999999
Q ss_pred chhcccCCCccccCCCcEEEcccCCcceEEEEEe-------CCCCCccccccCCCCCCCCC-----CcccccCCCCCchh
Q 018101 66 FLEYETDDKPREETIKPMVDGGTEGFKGHARVII-------PGVTPCFECTIWLFPPQVKF-----PLCTLAETPRTAAH 133 (360)
Q Consensus 66 ~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~-------p~~t~Cy~C~~~~~~~~~~~-----p~Cti~~~P~~~eh 133 (360)
..++|+|+++ .|+.||+.++. |+.++||+|..+..|..... +.|+
T Consensus 454 ------------~~~~PlI~aa-lG~~Gql~v~~g~~~~~~~~~~~CY~Cl~~~~P~~~~~~rtl~~~C~---------- 510 (615)
T 4gsl_A 454 ------------IENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCT---------- 510 (615)
T ss_dssp ------------HTTCEEEEEE-ECSSEEEEEECCC------CCCCCTTTSCSSCTTSCTTTTTTTCTTC----------
T ss_pred ------------HcCCeEEEEE-ccceeEEEEeecccccCCCCCCCceeeCCCCCCcccccccccccCcc----------
Confidence 8899999987 89999998764 46789999986533321100 1121
Q ss_pred hHHHhhhhhhhhhcCCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHH
Q 018101 134 CIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 213 (360)
Q Consensus 134 cI~wa~~~~w~~~~~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKi 213 (360)
.++|+.++||+++|+|++|+
T Consensus 511 ------------------------------------------------------------Vl~P~vgiigs~qA~EaLk~ 530 (615)
T 4gsl_A 511 ------------------------------------------------------------VTRPGVAMMASSLAVELMTS 530 (615)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------eecchHHHHHHHHHHHHHHH
Confidence 36889999999999999999
Q ss_pred HccCCCcc------cce-eeeecccCceeeeeecc--cCCCCccCCC
Q 018101 214 ASGCSKTL------SNY-LTYNGVAGLHIKVTEFV--KDKDCLVCGP 251 (360)
Q Consensus 214 l~~~~~~l------~n~-~~~~~~~~~~~~~~~~~--~~~~C~vC~~ 251 (360)
|+|.+... ... +.|++..+.+. .+.+. ++|+|++||.
T Consensus 531 Ll~~g~~~~~~~~~G~l~~~~dg~~~~f~-~~~l~~~~~p~C~~C~~ 576 (615)
T 4gsl_A 531 LLQTKYSGSETTVLGDIPHQIRGFLHNFS-ILKLETPAYEHCPACSP 576 (615)
T ss_dssp HHSCCCTTSSEETTEECCSEEEEETTTTE-EEEECCCCCTTCTTTCH
T ss_pred HhCCCCcccCcCcCCCCcEEEeccCCcce-EEeccCCCCCCCCCCCH
Confidence 99976442 222 57888776664 55555 6899999996
No 12
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=99.88 E-value=1.7e-22 Score=206.90 Aligned_cols=117 Identities=24% Similarity=0.227 Sum_probs=103.3
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCC---cchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~---~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
+|||++||++|+++|+++||+++|+++..++.+ ...+|+++||+||+|.||+++|.++|++|+ .
T Consensus 81 ~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~-------------~ 147 (531)
T 1tt5_A 81 SSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLW-------------N 147 (531)
T ss_dssp GGBTSBHHHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHH-------------H
T ss_pred hhcCcHHHHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHH-------------H
Confidence 689999999999999999999999999988865 357899999999999999999999999999 7
Q ss_pred CCCcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHH
Q 018101 79 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIE 136 (360)
Q Consensus 79 ~~iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~ 136 (360)
.++|||++|+.|+.|++++++|+ ..|+++ .|++...+.|+++.+|+.|+||-.
T Consensus 148 ~~iplI~~~~~G~~G~v~~~~p~-~~~~d~----~~~~~~~~lr~~~p~P~~~~~~~~ 200 (531)
T 1tt5_A 148 SQIPLLICRTYGLVGYMRIIIKE-HPVIES----HPDNALEDLRLDKPFPELREHFQS 200 (531)
T ss_dssp TTCCEEEEEEETTEEEEEEECSC-EEESCC----CCSSCCCCCCSSSCCHHHHHHHHT
T ss_pred cCCCEEEEEecCCeEEEEEEcCC-ceeccC----CCCCCCCcccccCCCCCchhhhhc
Confidence 89999999999999999999994 344554 244567889999999999988743
No 13
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=99.88 E-value=2.1e-22 Score=206.72 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=125.4
Q ss_pred CCCcCchHHHHHHHHHHhhCCCceEEEEeccCC---------------Ccc-hhhccCCcEEEEcCCCHHHHHHHHHHHh
Q 018101 1 MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---------------DKD-ISFYNDFNIIVLGLDSIEARSYINAVAC 64 (360)
Q Consensus 1 ~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~---------------~~~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~ 64 (360)
++|||++||++|+++|+++||+++|+++..+|. ..+ .++++++|+||+|+||+++|.++|++|+
T Consensus 375 ~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~ 454 (598)
T 3vh1_A 375 FEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSN 454 (598)
T ss_dssp STTCSSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999998762 112 5789999999999999999999999999
Q ss_pred hchhcccCCCccccCCCcEEEcccCCcceEEEEEe---C----CCCCccccccCCCCCCCCCCcccccCCCCCchhhHHH
Q 018101 65 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVII---P----GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEY 137 (360)
Q Consensus 65 ~~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~---p----~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~w 137 (360)
..++|+|++ +.|+.|++.++. | +.++||+|..+..|.. +.. +.
T Consensus 455 -------------~~~~plI~a-a~G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl~~~~p~~-~~~-~~-------------- 504 (598)
T 3vh1_A 455 -------------IENKTVINA-ALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTD-SLT-DR-------------- 504 (598)
T ss_dssp -------------HTTCEEEEE-EECSSEEEEEEEC--------CBCCTTTSCSSCSSS-CTT-TT--------------
T ss_pred -------------hcCCCEEEE-EECCccEEEEEccCCCccCCCCCCceeecCccCCCc-ccc-cc--------------
Confidence 789999996 589999998774 3 3578999986533321 100 00
Q ss_pred hhhhhhhhhcCCCCCCCCChhHHHHHHHHHHHHHHHcCCCCcccceeecccccccccccchHHHHHHHHHHHHHHHHccC
Q 018101 138 AHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 217 (360)
Q Consensus 138 a~~~~w~~~~~~~~fd~dd~~~l~fi~~~anlra~~~~I~~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~ 217 (360)
.+. ... +.++|+.+++|+++|.|++|+|+|.
T Consensus 505 -------------------------------------tld--------~~C----~Vl~p~vgvigslqA~Ealk~Llg~ 535 (598)
T 3vh1_A 505 -------------------------------------TLD--------QMC----TVTRPGVAMMASSLAVELMTSLLQT 535 (598)
T ss_dssp -------------------------------------TTT--------BSC----CCSCTHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------------------ccC--------CCC----CccCcHHHHHHHHHHHHHHHHHhCC
Confidence 000 000 1257888999999999999999987
Q ss_pred CC-----cccce--eeeecccCcee-eeeecccCCCCccCCC
Q 018101 218 SK-----TLSNY--LTYNGVAGLHI-KVTEFVKDKDCLVCGP 251 (360)
Q Consensus 218 ~~-----~l~n~--~~~~~~~~~~~-~~~~~~~~~~C~vC~~ 251 (360)
+. ++-+. ..++|....+. ......++|+|++||.
T Consensus 536 ~~ap~~~~~~g~l~~~l~g~l~~f~~~~l~~~r~~~C~~Cg~ 577 (598)
T 3vh1_A 536 KYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSP 577 (598)
T ss_dssp CCSSSSEETTEECCSEEEEETTTTEEEEECCBCCTTCTTTSH
T ss_pred CcccccccccccccceeecccccceeEeccCCCCCCCCCCch
Confidence 65 22222 13455433332 1223458999999996
No 14
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.5e-20 Score=204.43 Aligned_cols=211 Identities=15% Similarity=0.134 Sum_probs=146.0
Q ss_pred CCcCchHHHHHHHHHHhhCCCceEEEEeccCCCcchhhccCCcEEEEcCC-CHHHHHHHHHHHhhchhcccCCCccccCC
Q 018101 2 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETI 80 (360)
Q Consensus 2 ~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~i~~~~~~f~~~~DvVi~a~D-n~~aR~~iN~~c~~~~~~~~~~~~~~~~~ 80 (360)
+|||++||++|+++|+++||.++|+++..+++ .+++++||+||+|.| |+++|.++|++|+ .++
T Consensus 76 ~dvG~~Ka~a~~~~L~~lNP~v~v~~~~~~l~---~~~l~~~DvVv~~~d~~~~~r~~ln~~c~-------------~~~ 139 (1015)
T 3cmm_A 76 KDIGQKRGDVTRAKLAELNAYVPVNVLDSLDD---VTQLSQFQVVVATDTVSLEDKVKINEFCH-------------SSG 139 (1015)
T ss_dssp GGTTSBHHHHHHHHHTTSCTTSCEEECCCCCC---STTGGGCSEEEECTTSCHHHHHHHHHHHH-------------HHT
T ss_pred hhcChHHHHHHHHHHHHHCCCCeEEEecCCCC---HHHHhcCCEEEEcCCCCHHHHHHHHHHHH-------------HcC
Confidence 68999999999999999999999999998874 378999999999999 9999999999999 789
Q ss_pred CcEEEcccCCcceEEEEEeCCCCCccccccCCCCCCCCCCcccccCCCCCchhhHHHhhh------------------h-
Q 018101 81 KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHL------------------I- 141 (360)
Q Consensus 81 iPlI~~gt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~~~p~Cti~~~P~~~ehcI~wa~~------------------~- 141 (360)
+|+|.+++.|+.|++++. .++||.|..+..++..+...|++ +.| .+.||+.+-++ +
T Consensus 140 iplI~~~~~G~~G~v~~d---~~~~~~c~~~~~~~p~~~~i~~i-~~p-~~v~~l~~~~h~~~~gd~v~F~ev~gm~elN 214 (1015)
T 3cmm_A 140 IRFISSETRGLFGNTFVD---LGDEFTVLDPTGEEPRTGMVSDI-EPD-GTVTMLDDNRHGLEDGNFVRFSEVEGLDKLN 214 (1015)
T ss_dssp CEEEEEEEETTEEEEEEE---CCSCEEESBSSCCCCCEEEEEEE-CTT-CEEEESTTCCCCCCTTCEEEEECCBTSGGGG
T ss_pred CCEEEEEecccEEEEEec---CCCceEEeeCCCCCCccccccCC-CCC-ceeEeeecccccCCCCCeEEEEeeccchhhc
Confidence 999999999999999774 36899998754333334445555 333 23455443220 0
Q ss_pred -----------------------------------------------------------------------------hhh
Q 018101 142 -----------------------------------------------------------------------------KWD 144 (360)
Q Consensus 142 -----------------------------------------------------------------------------~w~ 144 (360)
.|.
T Consensus 215 ~~e~~~i~~~~p~~f~I~Dts~~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p~~l~~d~~k~~~~~~l~~~~~Al~~F~ 294 (1015)
T 3cmm_A 215 DGTLFKVEVLGPFAFRIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFA 294 (1015)
T ss_dssp SSCCEECEEEETTEEECSCCTTTCCCCBCCEEEECCCCEEECCCCHHHHHHSCCBCCSCGGGTHHHHHHHHHHHHHHHHH
T ss_pred CccceeeEEcCCceeEecccchhhhhhcCceeEEecCCcccCHHHHHHHHcChHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 000
Q ss_pred hhcCCCCCC-CCChhHHHHHHHHHHHHHHHcCCC-----CcccceeecccccccccccchHHHHHHHHHHHHHHHHccCC
Q 018101 145 EVHSGKSFD-PDDPEHMQWVYSEAVKRAELFGIP-----GVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS 218 (360)
Q Consensus 145 ~~~~~~~fd-~dd~~~l~fi~~~anlra~~~~I~-----~~~~~~~~~iag~IiPAIatT~Aivagl~~~E~lKil~~~~ 218 (360)
..++ ..+. ..+.+..+.+.+.|+.....+++. ..+-..++.++..--..++|++|++||+++||++|+++|..
T Consensus 295 ~~~~-gr~P~~~~~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKaiT~kf 373 (1015)
T 3cmm_A 295 VRHN-GELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKF 373 (1015)
T ss_dssp HHTT-TCCCCTTCHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHCBS
T ss_pred HhcC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHhccCC
Confidence 0000 0010 012333444444444444433211 11112233333333356889999999999999999999999
Q ss_pred CcccceeeeecccCce
Q 018101 219 KTLSNYLTYNGVAGLH 234 (360)
Q Consensus 219 ~~l~n~~~~~~~~~~~ 234 (360)
.|+++++.|++.....
T Consensus 374 ~Pi~~~~~~d~~~~~~ 389 (1015)
T 3cmm_A 374 TPLKQFMYFDSLESLP 389 (1015)
T ss_dssp CCCCSEEEEECGGGSC
T ss_pred CcccceEEecchhhcc
Confidence 9999999999876543
No 15
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=99.71 E-value=2.2e-18 Score=162.25 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=40.1
Q ss_pred CCCCCCCChh--HHHHHHHHHHHHHHHcCCCCcccceeeccccccc
Q 018101 149 GKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNII 192 (360)
Q Consensus 149 ~~~fd~dd~~--~l~fi~~~anlra~~~~I~~~~~~~~~~iag~Ii 192 (360)
++.|||||+. ||+||+++||+||++|||+..+++++|+||||||
T Consensus 231 pl~FeKDDd~N~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 231 PIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp CCCCCSSCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred CcceecCCCcccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence 4569999999 9999999999999999999999999999999997
No 16
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=99.66 E-value=4.7e-17 Score=129.73 Aligned_cols=91 Identities=26% Similarity=0.348 Sum_probs=82.7
Q ss_pred cCCC-ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeC----CcEEEecCCCChhHhhhccCCCchHHh-hcccccce
Q 018101 248 VCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR----GKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDI 321 (360)
Q Consensus 248 vC~~-~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~----~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~ 321 (360)
+||. ...+++++++||++|++.|+++.+++|..|+|+++ ++.||+.+||.+++.++.||.|+|.|| +.+| +|
T Consensus 1 ~Cg~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g--~e 78 (98)
T 1y8x_B 1 GSSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDG--QE 78 (98)
T ss_dssp ----CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTT--CE
T ss_pred CCCCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCC--CE
Confidence 4877 77889999999999999999998899999999999 999999999999999999999999999 9999 89
Q ss_pred eeeccccccccCCcceeEEEEEEEe
Q 018101 322 LHVTGVTGQSDKKTSCLRKLRVVFR 346 (360)
Q Consensus 322 l~~~~~~~v~d~~~~~~~~~~~~~~ 346 (360)
+ .|||++.+.+++|+|+|.
T Consensus 79 i------~VtD~~~p~~~~~rl~f~ 97 (98)
T 1y8x_B 79 L------AVADVTTPQTVLFKLHFT 97 (98)
T ss_dssp E------EEECTTCSSCEEEEEEC-
T ss_pred E------EEECCCCcccEEEEEEec
Confidence 9 999999999999999996
No 17
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=97.14 E-value=0.0003 Score=57.78 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHhcCccccceeceee--eCCcEEEecCCCChhHhhhccCCCchHHh-hcccccceeeeccccccccCCcc
Q 018101 260 SVTLEKFINLLEEHPKLQLAKASVT--YRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDKKTS 336 (360)
Q Consensus 260 ~~Tl~~li~~l~~~~~~~l~~~~i~--~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l~~~~~~~v~d~~~~ 336 (360)
.+||++|++.++.+++++= ..+|. .+.++||++. +.+||.|+|++| +++| +.| +|+|....
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~D-------fDDnl~k~L~dLgv~~g--sfL------tv~DEdde 82 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYD-------FEDLNDRTLSEINLGNG--SII------LFSDEEGD 82 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETT-------BCTTTTSBTTTTTCCTT--CEE------EEEESCCS
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCC-------ccccccCcHHHcCcCCC--cEE------EEEccccc
Confidence 5899999999988886653 44555 2478999863 446999999999 9999 899 99998654
No 18
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=92.08 E-value=0.11 Score=48.33 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=28.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHcCCCC
Q 018101 148 SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 178 (360)
Q Consensus 148 ~~~~fd~dd~~~l~fi~~~anlra~~~~I~~ 178 (360)
.|+.||..|+.|++||.++||++|..|||++
T Consensus 135 ~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~ 165 (276)
T 1z7l_A 135 HPLTFDVNNTLHLDYVMAAANLFAQTYGLTG 165 (276)
T ss_dssp CCCCCCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcccCCCchHHHHHHHHHHHHHHHHcCCCC
Confidence 4788999999999999999999999999975
No 19
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=70.28 E-value=1.8 Score=32.29 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=37.7
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
.+++++++.|+.+|.+.+.++. ++. .....||..++|. .. -...-.++|+++ +++| +.|
T Consensus 16 ~Ri~v~~~~t~~~L~~~I~~~~--~i~-----~~~~~l~~~~~p~-~~-l~~~~~~~l~~lgl~hG--d~l 75 (80)
T 2pjh_A 16 KRITATKRETAATFLKKVAKEF--GFQ-----NNGFSVYINRNKT-GE-ITASSSKSLHLLKIKHG--DLL 75 (80)
T ss_dssp EECCCCSSCCHHHHHHHHHHHT--CCC-----TTTCCCCCSCCGG-GG-SSSCCCCTTTTTCCCTT--CCE
T ss_pred EEEEcCCcChHHHHHHHHHHHc--CCC-----CCcceEEecCCCC-Cc-ccCCCCCCHHHcCCCCC--CEE
Confidence 3556677789999999998764 322 2334556666541 11 111256789999 9999 666
No 20
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=51.67 E-value=39 Score=30.81 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=28.2
Q ss_pred hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcccCCc
Q 018101 37 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 91 (360)
Q Consensus 37 ~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt~G~ 91 (360)
++.+.++|+||+++ ++++-.-.-+.|. ++++|+|- ||.|+
T Consensus 68 ~~ll~~~DVVIDfT-~p~a~~~~~~~al-------------~~G~~vVi-gTTG~ 107 (272)
T 4f3y_A 68 ERVCAEADYLIDFT-LPEGTLVHLDAAL-------------RHDVKLVI-GTTGF 107 (272)
T ss_dssp HHHHHHCSEEEECS-CHHHHHHHHHHHH-------------HHTCEEEE-CCCCC
T ss_pred HHHhcCCCEEEEcC-CHHHHHHHHHHHH-------------HcCCCEEE-ECCCC
Confidence 45677899999998 4554444445565 78999986 56665
No 21
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=47.76 E-value=16 Score=33.91 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCCceEEEEeccCCC--------------------c-c-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccc
Q 018101 20 VSGVNIVPHFCRIED--------------------K-D-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPRE 77 (360)
Q Consensus 20 Np~v~I~~~~~~i~~--------------------~-~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~ 77 (360)
.|++++.+...+-.+ . + ++++.++|+||+.+ ++++-.-.-+.|.
T Consensus 44 ~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT-~p~a~~~~~~~~l------------- 109 (288)
T 3ijp_A 44 RKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFS-QPQASVLYANYAA------------- 109 (288)
T ss_dssp CSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECS-CHHHHHHHHHHHH-------------
T ss_pred CCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcC-CHHHHHHHHHHHH-------------
Confidence 689998887554210 1 2 45678999999997 4555444445666
Q ss_pred cCCCcEEEcccCCc
Q 018101 78 ETIKPMVDGGTEGF 91 (360)
Q Consensus 78 ~~~iPlI~~gt~G~ 91 (360)
++++|+|-+ |.||
T Consensus 110 ~~Gv~vViG-TTG~ 122 (288)
T 3ijp_A 110 QKSLIHIIG-TTGF 122 (288)
T ss_dssp HHTCEEEEC-CCCC
T ss_pred HcCCCEEEE-CCCC
Confidence 789999954 5566
No 22
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=47.60 E-value=17 Score=25.59 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=33.2
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
..+.++++.|+.+|.+.+.++.++..+ ...|+..+ ..++ -+++|+++ +++| ..+
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~-------~qrL~~~g-k~L~------d~~tL~~~~i~~g--~~i 70 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVA-------NQRLIYSG-KILK------DDQTVESYHIQDG--HSV 70 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-------GEEEEETT-EECC------TTSBTGGGTCCTT--CEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHH-------HEEEEECC-eEcC------CCCCHHHcCCCCC--CEE
Confidence 456677889999999999876533222 22333222 1122 14788999 8888 555
No 23
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=41.03 E-value=44 Score=24.26 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=36.2
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hcccccceee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILH 323 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l~ 323 (360)
..+.+.++.+++.|.+.++++.++ ... .-+.+|.. .+-+-..+..+| +++| +.+|
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi--~~~----~~rf~fdG--------~~l~~~~Tp~~l~medg--D~Id 76 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGL--SGH----KLSFFFDG--------TKLSGKELPADLGLESG--DLIE 76 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTC--TTC----CCEEEETT--------EECCSCCCHHHHTCCTT--CEEE
T ss_pred EEEEECCCChHHHHHHHHHHHhCC--Ccc----cEEEEECC--------EEcCCCCCHHHcCCCCC--CEEE
Confidence 466778889999999999987633 321 12334422 122346789999 9999 6663
No 24
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=38.90 E-value=38 Score=25.76 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=33.1
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
..+.++++.|+.+|.+.+.++.++..+...+.++++. ++ -+++|+++ +++| ..+
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~--------L~------D~~tL~~~gI~~g--~~I 91 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKI--------LK------DQDTLSQHGIHDG--LTV 91 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEE--------EC------TTCCTGGGTCCTT--CEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEE--------CC------CcCcHHHcCCCCC--CEE
Confidence 4567778899999999998765332222222222211 21 24678888 8888 455
No 25
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=38.63 E-value=28 Score=24.76 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=31.8
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccc
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 317 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g 317 (360)
..+.++++.|+.+|-+.+.++.++..+. ..|+..+ ..++ -.++|+++ +++|
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~-------qrL~~~G-~~L~------d~~tL~~~~i~~~ 68 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDL-------FWLTFEG-KPLE------DQLPLGEYGLKPL 68 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGG-------EEEEETT-EECC------TTSBGGGGTCCTT
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHH-------EEEEECC-EECC------CCCcHHHCCCCCC
Confidence 4567778899999999998765332222 2333222 1122 24788888 8888
No 26
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=38.33 E-value=20 Score=26.55 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=33.2
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
..+.++++.|+.+|.+.+.++.++..+. ..|+..+ ..++ -+++|+++ +++| ..+
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~-------qrL~~~G-k~L~------D~~tL~~~gi~~g--~~i 84 (91)
T 3v6c_B 30 ITLEVEPSDTIENVKAKIQDKEGIPPDQ-------QRLIFAG-KQLE------DGRTLSDYNIQKE--STL 84 (91)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGG-------CEEEETT-EECC------TTCBTGGGTCCTT--CEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhh-------EEEEECC-eECC------CcCcHHHCCCCCC--CEE
Confidence 4566778899999999998765332222 2333222 1122 24788888 8888 444
No 27
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=38.17 E-value=37 Score=22.40 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=20.7
Q ss_pred cCchHHHHHHHHHHhhCCCceEEEEec
Q 018101 4 VGKPKAEVAAKRVMERVSGVNIVPHFC 30 (360)
Q Consensus 4 IGk~Ka~vaa~~l~~~Np~v~I~~~~~ 30 (360)
||++ ++.|++.|++-||+++|..+..
T Consensus 14 VG~~-~~~A~~~I~~e~P~v~v~vl~~ 39 (45)
T 1hym_A 14 VGVG-GSVAKAIIERQNPNVKAVILEE 39 (45)
T ss_dssp TTSC-HHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCCc-HHHHHHHHHHHCCCCeEEEecC
Confidence 4443 6789999999999999988754
No 28
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.19 E-value=72 Score=24.08 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=34.1
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
..++++++.|+.+|.+.+.++..+..+...+.++.+. ++ .-.++|++. +++| ..|
T Consensus 24 ~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~--------L~-----D~~~tL~~ygI~~g--~~l 79 (102)
T 1v5o_A 24 FSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQL--------LT-----DDHCSLGSYGLKDG--DMV 79 (102)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEE--------EC-----CSSSBHHHHTCCTT--EEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEE--------CC-----CCcccHHHCCCCCC--CEE
Confidence 4567888899999999998775333333222222211 11 113689999 9999 555
No 29
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.77 E-value=94 Score=23.11 Aligned_cols=67 Identities=21% Similarity=0.102 Sum_probs=39.9
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCC--CChhHhhhccCCCchHHh-hcccccceeeecccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAP--PVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVT 328 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~--~~~~~~~~~~L~k~l~el-v~~g~~~~l~~~~~~ 328 (360)
.....+..++|+++|-..+.+.. ++.+. ...|+.... +... ..-.+-.++|... +.+| ..+
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~--gip~~-----~q~L~~~~~~~~~~~-~~L~~d~~~L~~y~i~~G--~~I------ 87 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLL--KVPVS-----ELLLSYESSKMPGRE-IELENDLQPLQFYSVENG--DCL------ 87 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTT--TCCTT-----TCEEEEECTTSCSCE-EECCCSSSBSGGGTCCTT--CEE------
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--CCChh-----HeEEEEEcCCCCcee-eccCCCcccHhhcCCCCC--CEE------
Confidence 45566778899999999998876 43332 222332210 1000 0012346778888 9999 677
Q ss_pred ccccCC
Q 018101 329 GQSDKK 334 (360)
Q Consensus 329 ~v~d~~ 334 (360)
.|.|..
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 677754
No 30
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=35.37 E-value=78 Score=28.28 Aligned_cols=57 Identities=9% Similarity=0.002 Sum_probs=37.3
Q ss_pred hCCCceEEEEeccCCCcchhhc-cCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcccCCc
Q 018101 19 RVSGVNIVPHFCRIEDKDISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 91 (360)
Q Consensus 19 ~Np~v~I~~~~~~i~~~~~~f~-~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt~G~ 91 (360)
..|+.++.+...+-.+. .+++ .+.|+|||++.. ++-...-+.|. ++++|+|-+-| |+
T Consensus 22 ~~~~~elva~~d~~~dl-~~~~~~~~DvvIDfT~p-~a~~~~~~~a~-------------~~g~~~VigTT-G~ 79 (245)
T 1p9l_A 22 AADDLTLSAELDAGDPL-SLLTDGNTEVVIDFTHP-DVVMGNLEFLI-------------DNGIHAVVGTT-GF 79 (245)
T ss_dssp HCTTCEEEEEECTTCCT-HHHHHTTCCEEEECSCT-TTHHHHHHHHH-------------HTTCEEEECCC-CC
T ss_pred hCCCCEEEEEEccCCCH-HHHhccCCcEEEEccCh-HHHHHHHHHHH-------------HcCCCEEEcCC-CC
Confidence 35789998876543222 3344 389999999944 44444445665 78999987744 54
No 31
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=34.85 E-value=23 Score=26.07 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=37.8
Q ss_pred EE-eCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCC-hhHhhhccCCCchHHh-hcccccceeeeccccccc
Q 018101 255 IE-LDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPV-LEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQS 331 (360)
Q Consensus 255 ~~-~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~-~~~~~~~~L~k~l~el-v~~g~~~~l~~~~~~~v~ 331 (360)
+. ++++.|+.+|.+.+.++. ++. .+...|...+|+. ++ -.+-.++|+++ +.+| ..| .+.
T Consensus 14 v~~l~~~~Tv~~Lk~~I~~~~--gi~-----~~~qrL~~~~p~k~l~---l~~~~~tL~~~gl~~g--~~l------~v~ 75 (86)
T 2kzr_A 14 LQGLSSRTRLRELQGQIAAIT--GIA-----PGSQRILVGYPPECLD---LSDRDITLGDLPIQSG--DML------IVE 75 (86)
T ss_dssp ECSCCTTCBHHHHHHHHHHHT--CCC-----TTTCCCEESSCCCCCC---CCCSSCBTTTSSCCTT--CEE------ECC
T ss_pred eeecCCCCCHHHHHHHHHHHh--CCC-----ccceEEEeCCCCcccc---cCCCCCCHHHcCCCCC--CEE------EEE
Confidence 44 666789999999998765 322 1222233344431 11 01246899999 9999 667 666
Q ss_pred cCC
Q 018101 332 DKK 334 (360)
Q Consensus 332 d~~ 334 (360)
|..
T Consensus 76 ~~~ 78 (86)
T 2kzr_A 76 EDQ 78 (86)
T ss_dssp CCS
T ss_pred eCC
Confidence 654
No 32
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=30.27 E-value=1.1e+02 Score=27.01 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=21.8
Q ss_pred chhhccCCcEEEEcCCCHHHHHHHHHHH
Q 018101 36 DISFYNDFNIIVLGLDSIEARSYINAVA 63 (360)
Q Consensus 36 ~~~f~~~~DvVi~a~Dn~~aR~~iN~~c 63 (360)
..+.+.++|+||.|+|+.+.-..+-..|
T Consensus 85 ~~~dL~~adLVIaAT~d~~~N~~I~~~a 112 (223)
T 3dfz_A 85 GEEDLLNVFFIVVATNDQAVNKFVKQHI 112 (223)
T ss_dssp CGGGSSSCSEEEECCCCTHHHHHHHHHS
T ss_pred CHhHhCCCCEEEECCCCHHHHHHHHHHH
Confidence 4566789999999999987766666665
No 33
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=29.42 E-value=58 Score=24.99 Aligned_cols=60 Identities=10% Similarity=0.227 Sum_probs=35.1
Q ss_pred EEEeC-CCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCC---ChhHhh-h----ccCCCchHHh-hccccccee
Q 018101 254 LIELD-TSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPP---VLEEMT-R----SNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 254 ~~~~~-~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~---~~~~~~-~----~~L~k~l~el-v~~g~~~~l 322 (360)
+++++ ++.|+.+|.+.|.++..+.. ....|+....+ .-+... . ..-.++|+++ +++| +.|
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~-------~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G--~~L 89 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPI-------HNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG--SMV 89 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCT-------TTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT--CEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCc-------ccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC--CEE
Confidence 67788 88999999999987653222 22333322110 000000 1 1346789999 9999 666
No 34
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=28.05 E-value=1e+02 Score=23.21 Aligned_cols=61 Identities=13% Similarity=-0.049 Sum_probs=35.1
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
...+.+++.+|+.+|-+.+..+. ++.+ +...|+..++.... ..-..-.++|++. +++| ..|
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~--GiP~-----~~QrL~~~~~g~~~-~~L~~D~~tL~~Y~i~~g--sti 90 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILT--GGCA-----GTMKVQVFKGDTCV-STMDNNDAQLGYYANSDG--LRL 90 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHH--CSCT-----TTEEEEEEETTEEE-EECCCTTSBHHHHCCSSS--CEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHH--CcCH-----HHeEEEEecCCccc-ceeCCCCCCHhHCCcCCC--CEE
Confidence 35667778899999999998765 3222 23333322100000 0001235789999 9999 666
No 35
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=27.41 E-value=88 Score=23.06 Aligned_cols=62 Identities=6% Similarity=-0.148 Sum_probs=36.8
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
+....+++.+|+.+|-+.+..+. ++.+.. -+++|........ .....-.++|++. +++| ..+
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~--Gip~~~----QrLi~~~~~~~~~-g~~l~d~~tL~~Y~i~~g--~~i 78 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHF--ATPPEY----MQLQLIDDRGITI-EKNMANDKQLGYYQCRDE--FVI 78 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTS--CCCGGG----EEEEEECTTSCEE-ESSCCTTSBGGGGTCCTT--CEE
T ss_pred EEEEEcCccCcHHHHHHHHHHHH--CCCHHH----EEEEEecCCCCce-eeEcCCCCCHHHCCCCCC--CEE
Confidence 45666778899999999998876 333221 1344432110000 0112245789999 9999 566
No 36
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=27.26 E-value=81 Score=23.92 Aligned_cols=57 Identities=16% Similarity=-0.007 Sum_probs=36.2
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCC--C---ChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAP--P---VLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~--~---~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
+..+.+.+.+|+.+|-+.+..+. ++.+ +...|+.... . .+. .-.++|++. +++| ..|
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~--Gip~-----~~QrLi~~g~~g~~~~~L~-----~D~~tL~~Y~I~~g--~~I 90 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKC--GTSV-----NSMALELYDDSGSKVAVLS-----DDSRPLGFFSPFDG--FRL 90 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHH--CCCT-----TSEEEEEECSSSCBCCCSS-----GGGSCHHHHCCCSC--CEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHH--CcCH-----HHeEEEEecCCCcccceec-----CCcCCHHHCCCCCC--CEE
Confidence 46778888999999999998765 3222 3333332221 0 111 125789999 9999 667
No 37
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.48 E-value=47 Score=24.25 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=32.6
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
..+.++++.|+.+|.+.+.++. ++. .....|+... ..++ -+++|+++ +++| ..+
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~--gip-----~~~qrL~~~G-k~L~------D~~tL~~~gi~~g--~~l 78 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPIT--NVL-----PRGQKLIFKG-KVLV------ETSTLKQSDVGSG--AKL 78 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHH--CCC-----TTTCEEEETT-EECC------TTCBTTTTTCCTT--EEE
T ss_pred EEEEECCCCcHHHHHHHHHHHH--CcC-----hHHEEEEECC-eECC------CcCCHHHCCCCCC--CEE
Confidence 3556777899999999998764 322 1233333222 1122 24788888 8888 444
No 38
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=24.87 E-value=97 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=29.4
Q ss_pred hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcc
Q 018101 37 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 87 (360)
Q Consensus 37 ~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~g 87 (360)
.++++++|+||+++-..- -..+-+.|. ++++.++|..
T Consensus 72 ~~~~~~~DvVi~~~p~~~-~~~v~~~~~-------------~~g~~yvD~s 108 (365)
T 3abi_A 72 VEVMKEFELVIGALPGFL-GFKSIKAAI-------------KSKVDMVDVS 108 (365)
T ss_dssp HHHHTTCSEEEECCCGGG-HHHHHHHHH-------------HHTCEEEECC
T ss_pred HHHHhCCCEEEEecCCcc-cchHHHHHH-------------hcCcceEeee
Confidence 567899999999997653 345778887 8899999864
No 39
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=24.73 E-value=84 Score=28.41 Aligned_cols=40 Identities=28% Similarity=0.213 Sum_probs=29.3
Q ss_pred hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcccCCc
Q 018101 37 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 91 (360)
Q Consensus 37 ~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~gt~G~ 91 (360)
.+.+.+.|+||+++ ++++-..+-..|. ++++|+|-+-+ |+
T Consensus 67 ~~~l~~~DvVIDft-~p~~~~~~~~~a~-------------~~G~~vVigTt-G~ 106 (273)
T 1dih_A 67 DAVKDDFDVFIDFT-RPEGTLNHLAFCR-------------QHGKGMVIGTT-GF 106 (273)
T ss_dssp TTTTTSCSEEEECS-CHHHHHHHHHHHH-------------HTTCEEEECCC-CC
T ss_pred HHHhcCCCEEEEcC-ChHHHHHHHHHHH-------------hCCCCEEEECC-CC
Confidence 45667899999998 5666566666776 78999877655 54
No 40
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=24.19 E-value=1.8e+02 Score=25.76 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=34.8
Q ss_pred HHHHHhhCCCceEEEEeccCCC-------c-c-hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcE
Q 018101 13 AKRVMERVSGVNIVPHFCRIED-------K-D-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPM 83 (360)
Q Consensus 13 a~~l~~~Np~v~I~~~~~~i~~-------~-~-~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPl 83 (360)
++.+.+ +|+ ++.+...+-.+ + + ++++ ++|+||+....-.+...+. . ++++|+
T Consensus 19 ~~~l~~-~~~-eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~---l-------------~~g~~v 79 (243)
T 3qy9_A 19 ARLAEE-KGH-EIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNPNLLFPLLD---E-------------DFHLPL 79 (243)
T ss_dssp HHHHHH-TTC-EEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT---S-------------CCCCCE
T ss_pred HHHHHh-CCC-EEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCChHHHHHHHH---H-------------hcCCce
Confidence 333443 577 77775443211 1 2 4455 8999999875433433332 3 789999
Q ss_pred EEcccCCc
Q 018101 84 VDGGTEGF 91 (360)
Q Consensus 84 I~~gt~G~ 91 (360)
|. ||.|+
T Consensus 80 Vi-gTTG~ 86 (243)
T 3qy9_A 80 VV-ATTGE 86 (243)
T ss_dssp EE-CCCSS
T ss_pred Ee-CCCCC
Confidence 95 56676
No 41
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=23.74 E-value=83 Score=22.36 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=32.5
Q ss_pred eEEEeCCCCCHHHHHHHHhcCcc-ccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPK-LQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~-~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
..+.++++.|+.+|-+.+.++.. -++. .+...|+... ..++ -+++|+++ +++| ..+
T Consensus 18 ~~~~v~~~~TV~~lK~~i~~~~~~~gip-----~~~qrLi~~G-k~L~------D~~tL~~~~i~~g--~~i 75 (85)
T 2wyq_A 18 FKIRMEPDETVKVLKEKIEAEKGRDAFP-----VAGQKLIYAG-KILS------DDVPIRDYRIDEK--NFV 75 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCTTTCC-----GGGEEEEETT-EECC------TTSBGGGGCCCTT--SEE
T ss_pred EEEEECCCCCHHHHHHHHHhhccccCCC-----HHHeEEEECC-EECc------CCCCHHHcCCCCC--CEE
Confidence 35667788999999999987510 0222 2222333222 1122 24788999 8888 455
No 42
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=23.52 E-value=76 Score=24.09 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=20.3
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccc
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKL 276 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~ 276 (360)
..++.+.+..|+.|+++.-|+++++
T Consensus 21 r~~VKvtp~t~L~~VL~eaC~K~gl 45 (90)
T 2al3_A 21 RHTVKVTPSTVLLQVLEDTCRRQDF 45 (90)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCC
Confidence 4566677889999999999998844
No 43
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=22.75 E-value=83 Score=23.53 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=35.0
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
...+.+.++.+++.|.+.++++.+ +.... -+.+|.. .+-+-..+..+| +++| +.+
T Consensus 29 ~i~~~v~~~t~l~kl~~~y~~~~g--i~~~~----~rf~fdG--------~~l~~~~Tp~dl~medg--D~I 84 (93)
T 2d07_B 29 VVQFKIKRHTPLSKLMKAYCERQG--LSMRQ----IRFRFDG--------QPINETDTPAQLEMEDE--DTI 84 (93)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHT--CCGGG----EEEEETT--------EECCTTCCTTTTTCCTT--EEE
T ss_pred EEEEEEccCCHHHHHHHHHHHHhC--CCccc----eEEEECC--------EEcCCCCCHHHcCCCCC--CEE
Confidence 356677788899999999998763 33221 1233321 112245778888 8888 566
No 44
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.71 E-value=1.4e+02 Score=21.62 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=31.6
Q ss_pred EEEeCCC-----CCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 254 LIELDTS-----VTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 254 ~~~~~~~-----~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
.+.++++ .|+.+|.+.+.++.++ . .....|+... ..++ .-.++|+++ +++| ..+
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gi--p-----~~~qrL~~~G-k~L~-----D~~~~L~~~~i~~g--~~i 79 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGV--P-----QSFQKLIFKG-KSLK-----EMETPLSALGIQDG--CRV 79 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCC--C-----TTTCEEEETT-EEEC-----CSSSBHHHHTCCSS--EEE
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCc--C-----HHHEEEEECC-eecC-----CCcccHHHCCCCCC--CEE
Confidence 5566653 8999999999876532 2 1223333221 1121 124679999 8888 455
No 45
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=22.65 E-value=1.2e+02 Score=28.30 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHhhC-CCceEEEEecc--C-------------CCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 15 RVMERV-SGVNIVPHFCR--I-------------EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 15 ~l~~~N-p~v~I~~~~~~--i-------------~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
.+.+.+ |++++.++..+ . .+.+.+.|++.|+|+.|+....++.+.-.+. +
T Consensus 22 ~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~~a~~~~--------------~ 87 (336)
T 2r00_A 22 VLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAKWAPIAA--------------E 87 (336)
T ss_dssp HHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHHHHHHHH--------------H
T ss_pred HHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHHHHHHHH--------------H
Confidence 344443 88888877642 1 1122334578999999999988888877665 4
Q ss_pred CCCcEEEccc
Q 018101 79 TIKPMVDGGT 88 (360)
Q Consensus 79 ~~iPlI~~gt 88 (360)
.+..+|+.+.
T Consensus 88 ~G~~vId~s~ 97 (336)
T 2r00_A 88 AGVVVIDNTS 97 (336)
T ss_dssp TTCEEEECSS
T ss_pred cCCEEEEcCC
Confidence 6677887654
No 46
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=22.24 E-value=78 Score=23.82 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=35.3
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
...+.+.++.+++.+.+.++++. ++.... -+.+|.. .+-+-..++.+| +++| +.+
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~--gi~~~~----~rf~FdG--------~~l~~~~Tp~dl~medg--D~I 74 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQ--GLSMRQ----IRFRFDG--------QPINETDTPAQLEMEDE--DTI 74 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHH--TCCGGG----EEEEETT--------EECCTTCCTTTTTCCTT--CEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHh--CCCccc----EEEEECC--------EEcCCCCCHHHcCCCCC--CEE
Confidence 35667788899999999999876 333221 1233422 111245778889 8888 566
No 47
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=21.92 E-value=1.1e+02 Score=22.33 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=29.0
Q ss_pred EeccCCCcc--hhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCccccCCCcEEEcc
Q 018101 28 HFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 87 (360)
Q Consensus 28 ~~~~i~~~~--~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~~~iPlI~~g 87 (360)
+..++.+.. .+.++++|+||++.-.... ..+-+.|. +.+++.++.+
T Consensus 53 ~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~-~~~~~~~~-------------~~g~~~~~~~ 100 (118)
T 3ic5_A 53 KQVDAKDEAGLAKALGGFDAVISAAPFFLT-PIIAKAAK-------------AAGAHYFDLT 100 (118)
T ss_dssp EECCTTCHHHHHHHTTTCSEEEECSCGGGH-HHHHHHHH-------------HTTCEEECCC
T ss_pred EEecCCCHHHHHHHHcCCCEEEECCCchhh-HHHHHHHH-------------HhCCCEEEec
Confidence 444444322 4567899999999854333 44555565 6778887654
No 48
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=21.71 E-value=73 Score=23.88 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=35.3
Q ss_pred ceEEEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hccccccee
Q 018101 252 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 322 (360)
Q Consensus 252 ~~~~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l 322 (360)
...+.+.++.+++.+.+.++++. ++.... -+.+|.. .+-+-..+..+| +++| +.+
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~--gi~~~~----~rf~FdG--------~~l~~~~Tp~dl~medg--D~I 72 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQ--GLSMRQ----IRFRFDG--------QPINETDTPAQLEMEDE--DTI 72 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHT--TCCSTT----EEEEETT--------EECCTTCCTTTTTCCTT--EEE
T ss_pred EEEEEECCCChHHHHHHHHHHHh--CCCccc----EEEEECC--------EEcCCCCCHHHcCCCCC--CEE
Confidence 35677788899999999999876 333221 1233321 112345788889 8888 566
No 49
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=21.52 E-value=1.1e+02 Score=22.56 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=34.4
Q ss_pred eEEEeCCCCCHHHHHHHHhcCccccce---eceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hcccccceee
Q 018101 253 VLIELDTSVTLEKFINLLEEHPKLQLA---KASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILH 323 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~~~~l~---~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~g~~~~l~ 323 (360)
..+.++..+|+++|++.+.+.+++... .+.+...++.+.... ..+|++- +.+| +.||
T Consensus 19 ~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~------------~~~L~d~~ItnG--D~Le 79 (81)
T 2bps_A 19 FDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG------------ECKLSDCGITNG--DRLE 79 (81)
T ss_dssp EEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET------------TSBTGGGTCCTT--CEEE
T ss_pred EEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC------------CCEEeeCCcCCC--CEEE
Confidence 455566679999999999887644332 133443333322221 3456677 8889 6773
No 50
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=20.61 E-value=1.4e+02 Score=28.00 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=40.9
Q ss_pred HHHhhC-CCceEEEEeccC---------------CCcchhhccCCcEEEEcCCCHHHHHHHHHHHhhchhcccCCCcccc
Q 018101 15 RVMERV-SGVNIVPHFCRI---------------EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 78 (360)
Q Consensus 15 ~l~~~N-p~v~I~~~~~~i---------------~~~~~~f~~~~DvVi~a~Dn~~aR~~iN~~c~~~~~~~~~~~~~~~ 78 (360)
.|.+.+ |.+++.....+= .+.+.+-+++.|+|+.|+....++.+.-... +
T Consensus 20 lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a~~~~--------------~ 85 (344)
T 3tz6_A 20 LLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQAPRFA--------------A 85 (344)
T ss_dssp HHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHHHHHH--------------H
T ss_pred HHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHHHHHH--------------h
Confidence 344442 887777765321 1122334688999999999999998887775 5
Q ss_pred CCCcEEEccc
Q 018101 79 TIKPMVDGGT 88 (360)
Q Consensus 79 ~~iPlI~~gt 88 (360)
.+..+||.+.
T Consensus 86 ~G~~vID~Sa 95 (344)
T 3tz6_A 86 AGVTVIDNSS 95 (344)
T ss_dssp TTCEEEECSS
T ss_pred CCCEEEECCC
Confidence 6778888765
No 51
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.47 E-value=68 Score=24.23 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=32.1
Q ss_pred EEeCCCCCHHHHHHHHhcCccccceeceeeeCCcEEEecCCCChhHhhhccCCCchHHh-hcc
Q 018101 255 IELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDK 316 (360)
Q Consensus 255 ~~~~~~~Tl~~li~~l~~~~~~~l~~~~i~~~~~~LY~~~~~~~~~~~~~~L~k~l~el-v~~ 316 (360)
+.+++..+|++++-.+|++-++..+...+.-+ .. .++ .--|+|.|.|| +++
T Consensus 25 vRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d-------~~--~~e--~LdLskSLndlgirE 76 (91)
T 2daj_A 25 VRVSPHASLQELAPIICSKCEFDPLHTLLLKD-------YQ--SQE--PLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEECSSSCTTTHHHHHHHHTTCCTTSEEEESC-------SS--CCC--BCCTTSCHHHHTCSE
T ss_pred EEeCCCCcHHHHHHHHhhcccCChhhEEEecC-------CC--CCc--ccchhcchhhhhhhh
Confidence 34778999999999999988564443322222 11 111 12388999998 543
No 52
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=20.19 E-value=65 Score=22.86 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=17.9
Q ss_pred eEEEeCCCCCHHHHHHHHhcCc
Q 018101 253 VLIELDTSVTLEKFINLLEEHP 274 (360)
Q Consensus 253 ~~~~~~~~~Tl~~li~~l~~~~ 274 (360)
..+.++++.|+.+|.+.+.++.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHHH
Confidence 4566777899999999998765
No 53
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=20.12 E-value=1.1e+02 Score=20.01 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=20.0
Q ss_pred cCchHHHHHHHHHHhhCCCceEEEEec
Q 018101 4 VGKPKAEVAAKRVMERVSGVNIVPHFC 30 (360)
Q Consensus 4 IGk~Ka~vaa~~l~~~Np~v~I~~~~~ 30 (360)
||++ ++.|++.|.+-||++++..+..
T Consensus 9 VG~~-~~~A~~~I~~e~p~v~v~vl~~ 34 (47)
T 1cq4_A 9 VGKS-VEEAKKVILQDKPEAQIIVLPV 34 (47)
T ss_dssp TTSB-HHHHHHHHHHHCTTCEEEEEET
T ss_pred cCcc-HHHHHHHHHHHCCCCEEEEeCC
Confidence 5655 5678888999999998877654
Done!