Query 018102
Match_columns 360
No_of_seqs 212 out of 1403
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:09:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 4.3E-96 9E-101 729.7 27.7 337 19-358 32-382 (524)
2 PLN02998 beta-glucosidase 100.0 2.4E-91 5.2E-96 710.8 28.8 307 19-328 26-342 (497)
3 COG2723 BglB Beta-glucosidase/ 100.0 6.4E-91 1.4E-95 688.1 28.2 303 22-329 2-310 (460)
4 PLN02849 beta-glucosidase 100.0 8.2E-91 1.8E-95 707.8 29.4 307 16-327 22-337 (503)
5 PLN02814 beta-glucosidase 100.0 1.9E-90 4.2E-95 705.2 29.0 304 19-328 23-336 (504)
6 PRK09593 arb 6-phospho-beta-gl 100.0 4.5E-88 9.9E-93 685.4 29.1 301 21-328 3-323 (478)
7 TIGR01233 lacG 6-phospho-beta- 100.0 6.7E-88 1.4E-92 682.9 29.0 294 23-327 3-306 (467)
8 PRK13511 6-phospho-beta-galact 100.0 7.4E-88 1.6E-92 683.7 28.4 294 23-327 4-307 (469)
9 PF00232 Glyco_hydro_1: Glycos 100.0 1.7E-88 3.6E-93 687.6 21.7 303 22-331 3-309 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 3.2E-87 6.8E-92 678.9 29.6 298 23-326 3-320 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 1.2E-86 2.5E-91 674.5 31.0 303 19-327 1-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 9.2E-86 2E-90 667.0 29.2 299 23-327 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 1.3E-84 2.9E-89 653.2 28.4 296 24-327 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.4 4.5E-13 9.9E-18 133.1 9.0 109 77-190 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.4 2.3E-12 5.1E-17 121.3 10.3 110 78-191 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 98.8 1.5E-08 3.3E-13 95.6 9.0 84 98-190 1-86 (254)
17 COG1874 LacA Beta-galactosidas 98.7 4.6E-08 1E-12 102.9 8.3 118 79-201 32-176 (673)
18 PF07745 Glyco_hydro_53: Glyco 98.4 1.5E-05 3.2E-10 78.1 16.0 142 80-247 27-177 (332)
19 PF01229 Glyco_hydro_39: Glyco 98.3 3.1E-06 6.6E-11 87.2 10.0 141 79-245 41-202 (486)
20 COG2730 BglC Endoglucanase [Ca 98.3 2.9E-06 6.3E-11 85.5 9.5 116 73-189 64-193 (407)
21 PF00331 Glyco_hydro_10: Glyco 98.0 7.1E-05 1.5E-09 73.2 11.6 123 24-190 6-137 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.9 5E-05 1.1E-09 74.2 9.8 109 78-188 25-151 (319)
23 PLN03059 beta-galactosidase; P 97.3 0.0017 3.7E-08 70.2 11.1 114 72-188 49-188 (840)
24 PF01373 Glyco_hydro_14: Glyco 97.1 0.00056 1.2E-08 68.1 5.1 99 76-178 15-144 (402)
25 PF13204 DUF4038: Protein of u 97.1 0.0033 7.1E-08 60.6 9.7 102 81-187 34-156 (289)
26 PLN02803 beta-amylase 97.0 0.0024 5.1E-08 65.4 7.7 98 77-178 107-243 (548)
27 PLN02161 beta-amylase 96.9 0.004 8.6E-08 63.5 8.7 111 73-189 113-262 (531)
28 PF14587 Glyco_hydr_30_2: O-Gl 96.9 0.0027 5.9E-08 63.0 7.3 100 88-189 58-185 (384)
29 PLN00197 beta-amylase; Provisi 96.8 0.0046 9.9E-08 63.6 8.8 99 77-179 127-264 (573)
30 PF02836 Glyco_hydro_2_C: Glyc 96.7 0.0087 1.9E-07 57.6 9.4 93 75-187 34-132 (298)
31 PLN02801 beta-amylase 96.6 0.01 2.3E-07 60.5 9.5 100 75-178 35-173 (517)
32 COG3693 XynA Beta-1,4-xylanase 96.6 0.0068 1.5E-07 58.6 7.2 96 87-189 56-153 (345)
33 PLN02705 beta-amylase 96.4 0.013 2.7E-07 61.0 8.6 99 75-177 266-403 (681)
34 PLN02905 beta-amylase 96.3 0.021 4.4E-07 59.6 9.5 101 73-177 282-421 (702)
35 PRK10150 beta-D-glucuronidase; 96.3 0.018 4E-07 61.0 9.4 94 77-188 313-419 (604)
36 COG3867 Arabinogalactan endo-1 96.2 0.38 8.2E-06 46.4 16.7 144 80-246 65-222 (403)
37 PF14488 DUF4434: Domain of un 96.0 0.048 1.1E-06 48.3 9.1 105 77-190 20-133 (166)
38 KOG0496 Beta-galactosidase [Ca 95.7 0.075 1.6E-06 55.9 10.3 109 78-188 50-176 (649)
39 PRK09525 lacZ beta-D-galactosi 94.6 0.15 3.2E-06 57.5 9.3 91 75-188 369-464 (1027)
40 PRK10340 ebgA cryptic beta-D-g 93.7 0.25 5.4E-06 55.7 8.9 91 75-188 353-451 (1021)
41 COG3664 XynB Beta-xylosidase [ 93.1 0.16 3.4E-06 50.8 5.3 101 85-191 13-118 (428)
42 COG3250 LacZ Beta-galactosidas 92.6 0.55 1.2E-05 51.5 9.2 91 73-189 317-409 (808)
43 COG3934 Endo-beta-mannanase [C 91.6 0.098 2.1E-06 53.2 1.9 109 79-189 28-150 (587)
44 PF07488 Glyco_hydro_67M: Glyc 88.4 4.2 9.1E-05 39.5 10.0 90 76-176 56-150 (328)
45 KOG2233 Alpha-N-acetylglucosam 87.3 3.8 8.1E-05 42.1 9.3 136 76-234 77-273 (666)
46 smart00642 Aamy Alpha-amylase 86.1 2 4.2E-05 38.0 6.0 66 74-139 16-91 (166)
47 PF03198 Glyco_hydro_72: Gluca 85.0 6.1 0.00013 38.5 9.2 89 78-187 54-145 (314)
48 PF05089 NAGLU: Alpha-N-acetyl 83.9 6 0.00013 38.9 8.7 109 76-187 18-184 (333)
49 PF02638 DUF187: Glycosyl hydr 81.3 9.9 0.00021 37.0 9.2 99 77-175 19-154 (311)
50 PRK09058 coproporphyrinogen II 81.0 5.4 0.00012 40.9 7.5 107 79-201 162-270 (449)
51 PF14871 GHL6: Hypothetical gl 76.9 13 0.00029 31.5 7.5 53 82-139 5-65 (132)
52 PLN02361 alpha-amylase 76.5 5.7 0.00012 40.2 6.1 65 74-138 26-96 (401)
53 PF00128 Alpha-amylase: Alpha 76.1 5.3 0.00012 37.3 5.5 58 80-139 7-73 (316)
54 PRK05799 coproporphyrinogen II 76.0 6.4 0.00014 39.0 6.3 95 79-191 98-196 (374)
55 PF10566 Glyco_hydro_97: Glyco 75.6 16 0.00034 35.1 8.5 117 50-173 9-149 (273)
56 PLN00196 alpha-amylase; Provis 75.4 5.2 0.00011 40.8 5.5 64 75-138 42-112 (428)
57 PRK12313 glycogen branching en 74.8 14 0.0003 39.6 8.8 93 76-175 169-302 (633)
58 cd07948 DRE_TIM_HCS Saccharomy 74.0 14 0.00031 35.1 7.7 60 79-139 73-133 (262)
59 PRK05402 glycogen branching en 73.9 18 0.00038 39.5 9.4 91 78-175 266-397 (726)
60 TIGR01210 conserved hypothetic 73.6 18 0.0004 35.2 8.6 108 80-202 117-229 (313)
61 cd07945 DRE_TIM_CMS Leptospira 72.5 13 0.00027 35.7 7.1 83 78-172 75-158 (280)
62 cd02932 OYE_YqiM_FMN Old yello 72.2 1E+02 0.0022 30.1 15.5 39 102-141 62-100 (336)
63 PF12876 Cellulase-like: Sugar 70.2 7.6 0.00016 30.3 4.2 19 170-188 1-22 (88)
64 COG3534 AbfA Alpha-L-arabinofu 69.9 26 0.00057 35.9 8.7 95 79-188 50-175 (501)
65 TIGR02402 trehalose_TreZ malto 69.6 23 0.0005 37.2 8.8 92 76-175 110-237 (542)
66 TIGR02403 trehalose_treC alpha 68.2 8.6 0.00019 40.4 5.3 65 74-139 24-96 (543)
67 cd06543 GH18_PF-ChiA-like PF-C 67.8 27 0.00059 33.7 8.3 89 84-180 19-110 (294)
68 cd07939 DRE_TIM_NifV Streptomy 66.8 24 0.00051 33.2 7.6 59 79-138 71-130 (259)
69 PRK09441 cytoplasmic alpha-amy 65.8 9.7 0.00021 39.3 5.1 66 74-139 19-102 (479)
70 PRK06294 coproporphyrinogen II 65.5 27 0.00059 34.7 8.0 94 79-190 102-199 (370)
71 PRK12581 oxaloacetate decarbox 65.5 24 0.00051 36.5 7.7 57 74-144 97-158 (468)
72 PRK07379 coproporphyrinogen II 65.5 29 0.00063 34.9 8.3 106 79-201 114-222 (400)
73 PRK12399 tagatose 1,6-diphosph 65.2 36 0.00078 33.4 8.4 58 83-144 111-168 (324)
74 cd03174 DRE_TIM_metallolyase D 65.0 22 0.00048 32.9 7.0 60 80-140 77-137 (265)
75 PRK04161 tagatose 1,6-diphosph 64.9 37 0.0008 33.4 8.5 91 82-182 112-205 (329)
76 PRK10933 trehalose-6-phosphate 64.7 11 0.00024 39.7 5.3 65 73-139 29-102 (551)
77 TIGR01515 branching_enzym alph 64.6 40 0.00087 36.0 9.5 97 79-175 158-288 (613)
78 cd06592 GH31_glucosidase_KIAA1 64.3 46 0.001 32.1 9.2 105 80-188 33-167 (303)
79 PLN02746 hydroxymethylglutaryl 63.4 27 0.00058 34.7 7.4 85 78-172 122-208 (347)
80 cd04733 OYE_like_2_FMN Old yel 63.3 1.5E+02 0.0033 28.9 14.1 153 101-268 63-246 (338)
81 TIGR03581 EF_0839 conserved hy 62.9 27 0.00059 32.4 6.7 51 77-136 135-207 (236)
82 PRK12858 tagatose 1,6-diphosph 62.5 31 0.00068 34.1 7.7 52 83-138 112-163 (340)
83 PRK14705 glycogen branching en 62.2 42 0.00092 38.8 9.5 91 83-175 772-897 (1224)
84 COG1523 PulA Type II secretory 62.1 19 0.00041 39.1 6.5 56 83-139 206-286 (697)
85 PRK05692 hydroxymethylglutaryl 62.1 35 0.00077 32.8 7.9 86 78-173 80-167 (287)
86 PRK14041 oxaloacetate decarbox 61.7 30 0.00065 35.8 7.7 56 75-144 88-148 (467)
87 PRK05628 coproporphyrinogen II 61.7 47 0.001 32.9 9.0 104 79-200 107-214 (375)
88 PLN02784 alpha-amylase 61.7 18 0.00039 40.1 6.3 65 74-138 518-588 (894)
89 COG3589 Uncharacterized conser 61.4 39 0.00084 33.4 7.9 71 81-166 20-90 (360)
90 PF12891 Glyco_hydro_44: Glyco 61.3 19 0.00041 33.9 5.5 111 118-246 24-180 (239)
91 PRK09505 malS alpha-amylase; R 60.5 15 0.00033 39.8 5.5 61 79-139 232-313 (683)
92 PRK12568 glycogen branching en 59.6 42 0.00091 36.7 8.6 93 76-175 268-401 (730)
93 TIGR01211 ELP3 histone acetylt 59.4 63 0.0014 34.0 9.6 107 79-203 205-317 (522)
94 TIGR02456 treS_nterm trehalose 58.7 14 0.00031 38.7 4.9 64 76-139 27-97 (539)
95 PRK14040 oxaloacetate decarbox 58.6 36 0.00078 36.3 7.8 98 75-190 90-212 (593)
96 PRK09936 hypothetical protein; 58.4 1.1E+02 0.0023 29.8 10.2 62 79-149 40-101 (296)
97 cd07937 DRE_TIM_PC_TC_5S Pyruv 58.3 56 0.0012 31.1 8.5 47 79-139 93-139 (275)
98 cd06593 GH31_xylosidase_YicI Y 57.9 69 0.0015 30.8 9.2 106 79-188 26-161 (308)
99 cd02803 OYE_like_FMN_family Ol 57.2 1E+02 0.0022 29.7 10.3 151 103-268 63-238 (327)
100 PRK10785 maltodextrin glucosid 56.3 21 0.00045 38.1 5.6 54 79-139 181-247 (598)
101 TIGR02660 nifV_homocitr homoci 55.9 43 0.00094 33.3 7.5 60 79-139 74-134 (365)
102 PRK08599 coproporphyrinogen II 55.5 60 0.0013 32.2 8.5 105 79-200 99-206 (377)
103 PRK11858 aksA trans-homoaconit 55.0 49 0.0011 33.1 7.8 59 80-139 78-137 (378)
104 TIGR00433 bioB biotin syntheta 54.8 37 0.0008 32.2 6.7 56 79-138 122-178 (296)
105 COG0821 gcpE 1-hydroxy-2-methy 53.6 1.1E+02 0.0024 30.3 9.5 87 69-170 76-162 (361)
106 TIGR02090 LEU1_arch isopropylm 53.4 25 0.00054 35.0 5.4 62 77-139 71-133 (363)
107 cd07944 DRE_TIM_HOA_like 4-hyd 53.1 53 0.0011 31.1 7.3 47 80-140 85-131 (266)
108 PLN02447 1,4-alpha-glucan-bran 53.1 25 0.00053 38.6 5.6 94 82-175 256-383 (758)
109 cd06598 GH31_transferase_CtsZ 53.0 1E+02 0.0023 29.8 9.6 107 81-190 28-168 (317)
110 PRK03705 glycogen debranching 52.9 32 0.0007 37.1 6.4 91 83-175 185-329 (658)
111 TIGR00539 hemN_rel putative ox 52.6 37 0.0008 33.5 6.4 94 79-189 99-195 (360)
112 TIGR03471 HpnJ hopanoid biosyn 52.6 53 0.0011 33.7 7.8 60 80-144 287-348 (472)
113 cd06601 GH31_lyase_GLase GLase 52.2 79 0.0017 31.1 8.6 97 91-192 40-139 (332)
114 cd06603 GH31_GANC_GANAB_alpha 51.3 99 0.0021 30.3 9.2 72 120-191 66-167 (339)
115 TIGR00612 ispG_gcpE 1-hydroxy- 50.6 1E+02 0.0022 30.5 8.8 88 68-170 73-160 (346)
116 PRK05660 HemN family oxidoredu 50.5 65 0.0014 32.1 7.8 94 79-189 106-202 (378)
117 COG1501 Alpha-glucosidases, fa 50.5 44 0.00096 36.8 7.1 99 88-192 293-421 (772)
118 cd07938 DRE_TIM_HMGL 3-hydroxy 50.4 76 0.0017 30.2 8.0 84 79-172 75-160 (274)
119 PRK14511 maltooligosyl trehalo 49.7 27 0.00058 38.9 5.2 56 77-139 20-90 (879)
120 TIGR01232 lacD tagatose 1,6-di 49.3 1E+02 0.0022 30.4 8.6 58 83-144 112-169 (325)
121 PRK08446 coproporphyrinogen II 49.1 88 0.0019 30.8 8.4 93 80-189 98-193 (350)
122 cd06604 GH31_glucosidase_II_Ma 48.8 1.2E+02 0.0026 29.6 9.4 104 81-190 28-163 (339)
123 cd06542 GH18_EndoS-like Endo-b 48.8 68 0.0015 29.7 7.3 55 117-175 50-104 (255)
124 cd06602 GH31_MGAM_SI_GAA This 48.1 1E+02 0.0022 30.3 8.6 105 81-189 28-168 (339)
125 KOG1065 Maltase glucoamylase a 48.0 94 0.002 34.3 8.8 102 83-191 317-453 (805)
126 TIGR03234 OH-pyruv-isom hydrox 47.6 56 0.0012 30.1 6.5 66 76-144 83-150 (254)
127 PF03659 Glyco_hydro_71: Glyco 47.3 1.1E+02 0.0024 30.7 8.9 53 77-140 17-69 (386)
128 PRK14510 putative bifunctional 46.9 34 0.00073 39.7 5.7 65 75-139 183-268 (1221)
129 PRK00366 ispG 4-hydroxy-3-meth 46.4 1.1E+02 0.0024 30.5 8.4 87 69-170 82-169 (360)
130 PRK12331 oxaloacetate decarbox 46.2 81 0.0018 32.5 7.8 92 80-189 99-210 (448)
131 cd06591 GH31_xylosidase_XylS X 46.0 1.5E+02 0.0033 28.8 9.4 79 112-191 60-164 (319)
132 PRK07094 biotin synthase; Prov 45.9 69 0.0015 30.9 7.1 58 78-139 127-186 (323)
133 PRK14706 glycogen branching en 45.9 1.2E+02 0.0027 32.6 9.5 90 84-175 175-299 (639)
134 cd07940 DRE_TIM_IPMS 2-isoprop 45.8 70 0.0015 30.2 6.9 58 80-138 72-134 (268)
135 PRK12677 xylose isomerase; Pro 45.8 1.6E+02 0.0034 29.6 9.7 90 79-176 33-128 (384)
136 cd06600 GH31_MGAM-like This fa 45.7 1.5E+02 0.0033 28.7 9.4 104 83-190 30-164 (317)
137 TIGR01212 radical SAM protein, 44.1 1.3E+02 0.0028 29.0 8.6 73 117-202 162-234 (302)
138 cd02933 OYE_like_FMN Old yello 44.0 3.2E+02 0.007 26.8 16.6 197 103-317 63-314 (338)
139 TIGR02401 trehalose_TreY malto 43.8 37 0.0008 37.6 5.2 56 77-139 16-86 (825)
140 PRK08255 salicylyl-CoA 5-hydro 43.7 4.8E+02 0.01 28.7 16.3 167 86-267 440-647 (765)
141 PF01055 Glyco_hydro_31: Glyco 43.4 1.3E+02 0.0028 30.3 8.9 108 79-190 45-184 (441)
142 PRK01060 endonuclease IV; Prov 42.4 1.3E+02 0.0028 28.1 8.2 51 79-135 14-64 (281)
143 cd06545 GH18_3CO4_chitinase Th 42.3 91 0.002 29.0 7.0 73 96-175 26-99 (253)
144 COG0366 AmyA Glycosidases [Car 42.3 44 0.00095 33.9 5.3 51 81-138 33-97 (505)
145 PRK08208 coproporphyrinogen II 42.1 98 0.0021 31.4 7.7 93 79-189 140-236 (430)
146 cd06525 GH25_Lyc-like Lyc mura 41.4 2.1E+02 0.0046 25.1 9.0 50 82-144 13-62 (184)
147 PLN02960 alpha-amylase 41.0 47 0.001 37.0 5.4 95 74-175 413-549 (897)
148 PF03511 Fanconi_A: Fanconi an 40.2 20 0.00043 26.5 1.7 39 101-142 19-57 (64)
149 TIGR01108 oadA oxaloacetate de 39.7 1.1E+02 0.0024 32.6 7.9 93 80-190 94-206 (582)
150 PF04914 DltD_C: DltD C-termin 39.4 99 0.0021 26.2 6.1 57 117-177 35-91 (130)
151 PRK14507 putative bifunctional 38.6 95 0.0021 37.3 7.7 54 79-139 760-828 (1693)
152 cd02742 GH20_hexosaminidase Be 38.6 99 0.0021 29.8 6.8 62 79-147 18-98 (303)
153 PRK06582 coproporphyrinogen II 38.4 1.5E+02 0.0032 29.8 8.3 95 80-191 111-207 (390)
154 cd00019 AP2Ec AP endonuclease 38.2 1.7E+02 0.0036 27.4 8.2 54 77-136 10-64 (279)
155 TIGR02100 glgX_debranch glycog 37.8 60 0.0013 35.3 5.7 57 83-139 190-266 (688)
156 TIGR00538 hemN oxygen-independ 37.8 63 0.0014 33.0 5.6 61 79-144 150-213 (455)
157 PRK09249 coproporphyrinogen II 37.1 1.2E+02 0.0026 31.0 7.5 61 79-144 150-213 (453)
158 cd02874 GH18_CFLE_spore_hydrol 36.3 1.2E+02 0.0027 29.0 7.1 84 83-175 16-103 (313)
159 PRK13347 coproporphyrinogen II 36.3 71 0.0015 32.7 5.7 62 79-144 151-214 (453)
160 PF00682 HMGL-like: HMGL-like 36.2 1.2E+02 0.0025 27.7 6.7 79 80-173 66-149 (237)
161 cd07941 DRE_TIM_LeuA3 Desulfob 35.7 74 0.0016 30.2 5.4 61 80-141 81-142 (273)
162 TIGR02104 pulA_typeI pullulana 35.6 83 0.0018 33.5 6.2 59 117-175 228-312 (605)
163 cd07943 DRE_TIM_HOA 4-hydroxy- 35.5 1.7E+02 0.0037 27.4 7.8 46 80-139 88-133 (263)
164 PTZ00445 p36-lilke protein; Pr 35.3 81 0.0018 29.3 5.3 56 83-139 35-99 (219)
165 PLN02389 biotin synthase 35.0 1.2E+02 0.0025 30.5 6.9 59 77-139 175-234 (379)
166 TIGR03217 4OH_2_O_val_ald 4-hy 35.0 3E+02 0.0066 27.0 9.7 55 79-147 89-145 (333)
167 PRK05904 coproporphyrinogen II 34.9 2.1E+02 0.0046 28.2 8.7 93 80-190 103-199 (353)
168 TIGR02631 xylA_Arthro xylose i 34.6 3E+02 0.0065 27.6 9.7 93 77-177 32-130 (382)
169 TIGR01856 hisJ_fam histidinol 34.4 99 0.0021 28.9 5.9 61 118-180 15-78 (253)
170 smart00729 Elp3 Elongator prot 34.1 2.7E+02 0.006 23.7 8.5 57 78-138 98-157 (216)
171 PF10566 Glyco_hydro_97: Glyco 34.0 69 0.0015 30.7 4.8 60 80-151 109-168 (273)
172 PRK09057 coproporphyrinogen II 33.9 2E+02 0.0043 28.6 8.4 105 79-200 103-209 (380)
173 COG5520 O-Glycosyl hydrolase [ 32.9 1.4E+02 0.003 30.0 6.6 94 88-190 77-181 (433)
174 PRK08207 coproporphyrinogen II 32.6 1.1E+02 0.0024 31.8 6.5 93 80-189 269-364 (488)
175 PRK13209 L-xylulose 5-phosphat 32.0 4.2E+02 0.0091 24.6 9.9 53 79-136 23-75 (283)
176 cd07947 DRE_TIM_Re_CS Clostrid 32.0 92 0.002 29.9 5.3 62 76-138 73-135 (279)
177 COG5016 Pyruvate/oxaloacetate 31.9 2E+02 0.0044 29.3 7.7 57 74-144 90-151 (472)
178 PF01261 AP_endonuc_2: Xylose 31.6 56 0.0012 28.5 3.6 61 76-137 70-131 (213)
179 TIGR02026 BchE magnesium-proto 31.6 1.8E+02 0.0038 30.2 7.8 60 80-144 287-348 (497)
180 cd02929 TMADH_HD_FMN Trimethyl 31.1 5.4E+02 0.012 25.6 15.3 131 109-253 75-231 (370)
181 PLN02925 4-hydroxy-3-methylbut 31.0 1.6E+02 0.0035 32.0 7.3 51 120-171 212-262 (733)
182 COG3661 AguA Alpha-glucuronida 30.9 3E+02 0.0065 28.5 8.7 87 77-172 183-275 (684)
183 cd06565 GH20_GcnA-like Glycosy 30.4 1.8E+02 0.0039 28.1 7.1 61 79-147 19-86 (301)
184 PRK09856 fructoselysine 3-epim 30.4 74 0.0016 29.6 4.4 60 76-137 89-148 (275)
185 PRK11572 copper homeostasis pr 30.3 1.7E+02 0.0036 27.8 6.6 42 76-127 72-113 (248)
186 PRK09997 hydroxypyruvate isome 29.7 1.6E+02 0.0035 27.2 6.5 63 79-144 87-151 (258)
187 PRK10605 N-ethylmaleimide redu 29.5 5.7E+02 0.012 25.3 17.1 191 111-317 72-321 (362)
188 TIGR00542 hxl6Piso_put hexulos 29.5 95 0.002 29.1 5.0 61 76-138 93-153 (279)
189 COG3684 LacD Tagatose-1,6-bisp 29.5 96 0.0021 29.7 4.8 55 83-142 117-171 (306)
190 TIGR00542 hxl6Piso_put hexulos 29.4 4.5E+02 0.0097 24.5 9.6 53 78-135 17-69 (279)
191 PRK13523 NADPH dehydrogenase N 29.3 5.6E+02 0.012 25.2 12.0 140 111-267 74-236 (337)
192 TIGR00423 radical SAM domain p 28.6 3.1E+02 0.0068 26.3 8.5 58 79-144 106-170 (309)
193 COG3280 TreY Maltooligosyl tre 28.4 1.3E+02 0.0029 33.0 6.1 65 80-148 22-94 (889)
194 PRK13398 3-deoxy-7-phosphohept 28.2 2E+02 0.0043 27.4 6.9 72 72-148 36-108 (266)
195 PRK05474 xylose isomerase; Pro 28.1 6.8E+02 0.015 25.8 14.0 144 83-255 85-238 (437)
196 PF04028 DUF374: Domain of unk 28.1 2.2E+02 0.0047 21.7 5.8 40 84-138 27-66 (74)
197 PF02057 Glyco_hydro_59: Glyco 27.8 1.2E+02 0.0025 32.9 5.7 65 122-189 116-185 (669)
198 PRK08195 4-hyroxy-2-oxovalerat 27.3 1.4E+02 0.003 29.4 5.9 46 80-139 91-136 (337)
199 cd06568 GH20_SpHex_like A subg 27.1 2.4E+02 0.0052 27.6 7.4 63 78-147 19-101 (329)
200 PRK14566 triosephosphate isome 26.7 1.7E+02 0.0037 27.8 6.1 48 84-139 89-136 (260)
201 PRK09282 pyruvate carboxylase 26.7 2.5E+02 0.0054 30.0 8.0 93 79-189 98-210 (592)
202 cd06599 GH31_glycosidase_Aec37 26.2 2.4E+02 0.0052 27.3 7.2 110 80-190 32-172 (317)
203 PF14606 Lipase_GDSL_3: GDSL-l 25.9 1.6E+02 0.0034 26.4 5.4 94 80-186 49-146 (178)
204 COG0635 HemN Coproporphyrinoge 25.8 2.2E+02 0.0048 28.9 7.1 105 80-202 137-245 (416)
205 PF04055 Radical_SAM: Radical 25.8 1.1E+02 0.0024 25.0 4.3 51 80-134 90-143 (166)
206 TIGR00587 nfo apurinic endonuc 25.8 2.1E+02 0.0045 27.0 6.6 56 79-140 13-68 (274)
207 cd06570 GH20_chitobiase-like_1 25.5 2.5E+02 0.0055 27.3 7.2 62 79-146 20-93 (311)
208 PRK13210 putative L-xylulose 5 25.3 4.9E+02 0.011 24.0 9.1 53 79-136 18-70 (284)
209 PF04551 GcpE: GcpE protein; 25.1 1.3E+02 0.0029 30.0 5.1 51 118-169 118-168 (359)
210 PRK12330 oxaloacetate decarbox 25.1 2.8E+02 0.0061 29.0 7.8 97 80-190 100-214 (499)
211 PF02055 Glyco_hydro_30: O-Gly 25.0 1.9E+02 0.0042 30.1 6.7 102 87-190 110-236 (496)
212 PRK14042 pyruvate carboxylase 25.0 2.9E+02 0.0063 29.6 8.0 25 75-99 89-118 (596)
213 TIGR02159 PA_CoA_Oxy4 phenylac 25.0 95 0.0021 26.9 3.7 55 71-135 36-91 (146)
214 PRK06256 biotin synthase; Vali 24.7 1.3E+02 0.0029 29.1 5.2 57 78-138 150-207 (336)
215 PF07071 DUF1341: Protein of u 24.6 1.5E+02 0.0033 27.3 5.0 45 77-133 135-179 (218)
216 PRK09389 (R)-citramalate synth 24.1 3.2E+02 0.0069 28.4 8.0 109 77-190 73-200 (488)
217 PF03932 CutC: CutC family; I 24.1 1E+02 0.0023 28.1 4.0 42 77-128 72-113 (201)
218 cd06522 GH25_AtlA-like AtlA is 24.0 3.7E+02 0.0079 23.9 7.5 49 81-144 16-66 (192)
219 cd06413 GH25_muramidase_1 Unch 23.9 4.3E+02 0.0093 23.3 8.0 48 82-142 16-63 (191)
220 PF10107 Endonuc_Holl: Endonuc 23.9 45 0.00097 29.2 1.4 42 278-321 72-113 (156)
221 PF13812 PPR_3: Pentatricopept 23.8 74 0.0016 19.0 2.1 15 120-134 20-34 (34)
222 PRK13210 putative L-xylulose 5 23.7 1.3E+02 0.0028 28.0 4.7 58 78-138 95-153 (284)
223 cd06595 GH31_xylosidase_XylS-l 23.6 3E+02 0.0065 26.3 7.3 107 82-190 30-163 (292)
224 PF11790 Glyco_hydro_cc: Glyco 23.2 64 0.0014 30.0 2.5 24 165-189 54-77 (239)
225 PTZ00445 p36-lilke protein; Pr 23.0 1.1E+02 0.0023 28.5 3.8 52 118-172 29-89 (219)
226 TIGR02630 xylose_isom_A xylose 22.9 8.4E+02 0.018 25.1 14.0 144 83-255 84-237 (434)
227 smart00052 EAL Putative diguan 22.6 1.7E+02 0.0037 26.1 5.2 62 70-137 148-209 (241)
228 cd06419 GH25_muramidase_2 Unch 22.2 3.3E+02 0.0072 24.4 6.9 26 157-182 109-134 (190)
229 cd02930 DCR_FMN 2,4-dienoyl-Co 22.2 7.5E+02 0.016 24.2 12.5 145 111-268 70-234 (353)
230 TIGR02629 L_rham_iso_rhiz L-rh 21.7 3.4E+02 0.0073 27.7 7.3 88 80-182 73-171 (412)
231 TIGR03551 F420_cofH 7,8-dideme 21.6 3.4E+02 0.0073 26.5 7.4 90 79-185 140-234 (343)
232 KOG0470 1,4-alpha-glucan branc 21.5 1.1E+02 0.0025 33.2 4.2 64 76-140 253-333 (757)
233 PF01624 MutS_I: MutS domain I 21.4 1.1E+02 0.0025 24.7 3.4 60 73-138 24-84 (113)
234 COG2100 Predicted Fe-S oxidore 21.1 3.4E+02 0.0074 27.0 6.9 82 75-171 199-284 (414)
235 TIGR02102 pullulan_Gpos pullul 20.8 2.4E+02 0.0052 32.6 6.7 59 117-175 554-635 (1111)
236 cd00311 TIM Triosephosphate is 20.8 2.7E+02 0.0058 26.2 6.1 48 84-139 78-125 (242)
237 cd01335 Radical_SAM Radical SA 20.4 1.8E+02 0.0039 24.5 4.6 57 79-139 87-146 (204)
238 PRK13537 nodulation ABC transp 20.2 1.5E+02 0.0032 28.5 4.5 30 111-140 168-197 (306)
239 TIGR01235 pyruv_carbox pyruvat 20.1 3.7E+02 0.008 31.3 8.1 63 29-98 574-646 (1143)
240 TIGR00674 dapA dihydrodipicoli 20.1 4.7E+02 0.01 24.7 7.8 62 108-184 13-74 (285)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-96 Score=729.72 Aligned_cols=337 Identities=55% Similarity=1.018 Sum_probs=313.7
Q ss_pred CCCCCCCCCCeeeeeccccccccccCCCCCCCceeeeeccc-CCccccCCCCCccCccccccHHHHHHHHHcCCCeEEec
Q 018102 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHT-EGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFS 97 (360)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~s 97 (360)
+++..||++|+||+||||||+|||+++|||++|+||+|.+. ++++.+..++++|||+||||+|||+|||+||+++||||
T Consensus 32 ~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFS 111 (524)
T KOG0626|consen 32 FSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFS 111 (524)
T ss_pred ccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEE
Confidence 45778999999999999999999999999999999999984 44666778899999999999999999999999999999
Q ss_pred ccccccccCCC--CCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 018102 98 ISWSRIFPDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 98 i~W~ri~P~~~--g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
||||||+|.|. + .+|++||++|+++|++|+++||+|+|||+|||+|++|+++||||.|+++++.|.+||+.||++||
T Consensus 112 IsWSRIlP~G~~~~-gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 112 ISWSRILPNGRLTG-GVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred eehHhhCCCCCcCC-CcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999986 5 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecccccccccCccccccCCCC---------CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 018102 176 DRVKNWITINEPLQTAVNGYCTGIFAPGR---------HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (360)
Q Consensus 176 ~~V~~w~t~NEp~~~~~~gy~~g~~~p~~---------~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~ 246 (360)
|+||+|+|+|||++++..||..|..|||+ .+++.++.|.+.|||++|||+||++||+.++..|+|+||+++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999998 367889999999999999999999999998878999999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhcccCCCCCHhHHHHhcCCCcEEEEcccccccccc
Q 018102 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAH 326 (360)
Q Consensus 247 ~~~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~ed~e~ikg~~DFiGiNYYss~~V~~ 326 (360)
+..|+.|.+++++|.+||+|+..|..+|+++|++.|+||..|++.++.|||.||++|.++|||+.||||||||++.+|++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999988999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred CCCCC-CCCCCccccceeEeeeecCC-eecCCCC
Q 018102 327 ATKSP-EEGSFYEAQEMERLVEWEGG-EVIGEKV 358 (360)
Q Consensus 327 ~~~~~-~~~~~~~~~~~~~~~~~~~g-~~ig~~~ 358 (360)
.+.+. ...+++.+|..+.. ..+| .+||+++
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~ 382 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKA 382 (524)
T ss_pred cCCCCCCCCcccccccceee--eecccccccccc
Confidence 77533 23466777777776 4455 7777654
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=2.4e-91 Score=710.80 Aligned_cols=307 Identities=50% Similarity=0.945 Sum_probs=285.3
Q ss_pred CCCCCCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEecc
Q 018102 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (360)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si 98 (360)
+.+.+||++|+||+|||||||||+++++|||+|+||.+.+ ++. ....++++||||||||+|||+|||+||+++|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 5566799999999999999999999999999999999987 442 22247788999999999999999999999999999
Q ss_pred cccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 018102 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (360)
Q Consensus 99 ~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V 178 (360)
+||||+|++.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 104 sWsRI~P~G~g-~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 104 SWSRLLPSGRG-PINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred cHHhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 99999999878 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccccccCccccccCCCCCC----------CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecC
Q 018102 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (360)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~g~~~p~~~~----------~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~ 248 (360)
++|+|+|||++++..||..|.+|||... ++.++.++++||+++|||+||+++|+.++..++++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 9999999999999999999999998521 123457999999999999999999997544568999999999
Q ss_pred cccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhcccCCCCCHhHHHHhcCCCcEEEEccccccccccCC
Q 018102 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHAT 328 (360)
Q Consensus 249 ~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~ed~e~ikg~~DFiGiNYYss~~V~~~~ 328 (360)
.++||.+++|+|++||++++++.++||+||+++|+||+.+++.+++++|.||++|+++|++++||||||||+|.+|+..+
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~ 342 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNS 342 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999998643
No 3
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-91 Score=688.08 Aligned_cols=303 Identities=43% Similarity=0.777 Sum_probs=284.6
Q ss_pred CCCCCCCeeeeeccccccccccCCCCCCCceeeeecc--cCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEeccc
Q 018102 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH--TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSIS 99 (360)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~--~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~ 99 (360)
.+||++|+||+||||+|+||++++||||+|+||.|.+ .++++..+..++.||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999998 46666677889999999999999999999999999999999
Q ss_pred ccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 018102 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVK 179 (360)
Q Consensus 100 W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V~ 179 (360)
||||+|++++..+|++||+||+++||+|+++||+|+|||+|||+|.||.++||||.|++++++|++||++|++||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998544799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCcccccCCCCHH
Q 018102 180 NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIE 259 (360)
Q Consensus 180 ~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~~~p~ 259 (360)
+|+||||||+++..||+.|.+||+.. +.+.++|++||+++|||+|++++|++.+ +.+|||+++..+.||.+++|+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~--~~~~~~qa~hh~~lA~A~avk~~~~~~~---~~kIG~~~~~~p~YP~s~~p~ 236 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIV--DPKAAYQVAHHMLLAHALAVKAIKKINP---KGKVGIILNLTPAYPLSDKPE 236 (460)
T ss_pred EEEEecchhhhhcccccccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHhhCC---cCceEEEeccCcCCCCCCCHH
Confidence 99999999999999999999999975 3788999999999999999999999864 449999999999999999999
Q ss_pred HHHHHHHHHhhhccccccceeccCCChHHHhhhccc--CCCCCHhHHHHhc-CCCcEEEEcccc-ccccccCCC
Q 018102 260 DKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVR-NSLDFVGLNHYT-SRFIAHATK 329 (360)
Q Consensus 260 D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~ed~e~ik-g~~DFiGiNYYs-s~~V~~~~~ 329 (360)
|+.||++++++.|++|+||+++|.||.++.+.+++. +|.++++|+++|+ +++||||||||+ +.+++..+.
T Consensus 237 dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~ 310 (460)
T COG2723 237 DVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPR 310 (460)
T ss_pred HHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCC
Confidence 999999999999999999999999999999999875 7999999999997 579999999999 666665553
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=8.2e-91 Score=707.76 Aligned_cols=307 Identities=47% Similarity=0.907 Sum_probs=286.1
Q ss_pred cCCCCCCCCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEE
Q 018102 16 PRNVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYR 95 (360)
Q Consensus 16 ~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R 95 (360)
+..+.+.+||++|+||+|||||||||+++++|||+|+||.+.+.++ +.++++||||||||+|||+|||+||+++||
T Consensus 22 ~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYR 97 (503)
T PLN02849 22 SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFR 97 (503)
T ss_pred cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEE
Confidence 3346667899999999999999999999999999999999987442 357888999999999999999999999999
Q ss_pred ecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 018102 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 96 ~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
|||+|+||+|++.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++||
T Consensus 98 fSIsWsRI~P~G~g-~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 98 FSISWSRLIPNGRG-SVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred EeccHHhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999878 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecccccccccCccccccCCCCCC---------CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 018102 176 DRVKNWITINEPLQTAVNGYCTGIFAPGRHQ---------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (360)
Q Consensus 176 ~~V~~w~t~NEp~~~~~~gy~~g~~~p~~~~---------~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~ 246 (360)
|+|++|+|+|||++++..||..|.+|||... ++.++.++++||+++|||+||+++|++++..++++||+++
T Consensus 177 DrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~ 256 (503)
T PLN02849 177 NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSL 256 (503)
T ss_pred CcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 9999999999999999999999999999631 1234689999999999999999999975334689999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhcccCCCCCHhHHHHhcCCCcEEEEcccccccccc
Q 018102 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAH 326 (360)
Q Consensus 247 ~~~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~ed~e~ikg~~DFiGiNYYss~~V~~ 326 (360)
+..++||.+++|+|+.||++++++.++||+||+++|+||+.|++.++.++|.++++|+++|++++||||||||+|.+|+.
T Consensus 257 ~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 257 FALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTN 336 (503)
T ss_pred ECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhccc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999986
Q ss_pred C
Q 018102 327 A 327 (360)
Q Consensus 327 ~ 327 (360)
.
T Consensus 337 ~ 337 (503)
T PLN02849 337 I 337 (503)
T ss_pred C
Confidence 4
No 5
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.9e-90 Score=705.19 Aligned_cols=304 Identities=45% Similarity=0.874 Sum_probs=282.3
Q ss_pred CCCCCCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEecc
Q 018102 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (360)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si 98 (360)
+.+.+||++|+||+||||||+||+++++|||+|+||.+.+. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 44567999999999999999999999999999999998762 22457889999999999999999999999999999
Q ss_pred cccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 018102 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (360)
Q Consensus 99 ~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V 178 (360)
+||||+|+++| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 99 sWsRI~P~G~g-~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrV 177 (504)
T PLN02814 99 SWSRLIPNGRG-LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDV 177 (504)
T ss_pred cHhhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcC
Confidence 99999999888 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccccccCccccccCCCCCC----------CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecC
Q 018102 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (360)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~g~~~p~~~~----------~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~ 248 (360)
++|+|+|||++++..||..|.. ||... ++.++.++++||+++|||+||+++|+.++..++++||++++.
T Consensus 178 k~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~ 256 (504)
T PLN02814 178 KLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFA 256 (504)
T ss_pred CEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeC
Confidence 9999999999999999998885 76421 122468999999999999999999997554578999999999
Q ss_pred cccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhcccCCCCCHhHHHHhcCCCcEEEEccccccccccCC
Q 018102 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHAT 328 (360)
Q Consensus 249 ~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~ed~e~ikg~~DFiGiNYYss~~V~~~~ 328 (360)
.++||.+++|+|+.||++++++.++||+||+++|+||+.|++.++.++|.||++|+++|++++||||||||+|.+|+..+
T Consensus 257 ~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~ 336 (504)
T PLN02814 257 FGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRP 336 (504)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999997543
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.5e-88 Score=685.40 Aligned_cols=301 Identities=32% Similarity=0.556 Sum_probs=273.1
Q ss_pred CCCCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccc--c----------C--CCCCccCccccccHHHHHHH
Q 018102 21 KTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII--D----------K--SNGDVAVDHYHRYKEDIDLI 86 (360)
Q Consensus 21 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~--~----------~--~~~~~a~~~~~~~~eDi~l~ 86 (360)
..+||++|+||+|||||||||++++||||+|+||+|.+.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 45699999999999999999999999999999999887544431 1 1 15788999999999999999
Q ss_pred HHcCCCeEEecccccccccCCC-CCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHH
Q 018102 87 AKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEI 165 (360)
Q Consensus 87 ~~lG~~~~R~si~W~ri~P~~~-g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ 165 (360)
|+||+++|||||+||||+|+|. | .+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~-~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~ 161 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDEL-EPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYER 161 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHH
Confidence 9999999999999999999974 5 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccEEEEecccccccccCcc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEE
Q 018102 166 YADTCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIG 243 (360)
Q Consensus 166 ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG 243 (360)
||+.|+++|||+|++|+||||||+++..||. .|. +|||.. +..+.++++||+++|||+||+++|+.. ++++||
T Consensus 162 YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~--~~~~~~~a~h~~llAHa~A~~~~~~~~---~~g~VG 236 (478)
T PRK09593 162 LCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN--KEQVKYQAAHHELVASAIATKIAHEVD---PENKVG 236 (478)
T ss_pred HHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc--hhhhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEE
Confidence 9999999999999999999999999988886 454 377642 345689999999999999999999964 589999
Q ss_pred EeecCcccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhcc--cCCCCCHhHHHHhc-CCCcEEEEcccc
Q 018102 244 LVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD--QLPKFMQKDKELVR-NSLDFVGLNHYT 320 (360)
Q Consensus 244 ~~~~~~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~--~~p~~t~ed~e~ik-g~~DFiGiNYYs 320 (360)
++++..++||.+++|+|++||++++ +.+++|+||+++|+||+.|++.++. ..|.||++|+++|+ +++||||||||+
T Consensus 237 i~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt 315 (478)
T PRK09593 237 CMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYS 315 (478)
T ss_pred EEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEeccc
Confidence 9999999999999999999999987 4578999999999999999999975 36889999999996 899999999999
Q ss_pred ccccccCC
Q 018102 321 SRFIAHAT 328 (360)
Q Consensus 321 s~~V~~~~ 328 (360)
|.+|+..+
T Consensus 316 ~~~v~~~~ 323 (478)
T PRK09593 316 SRVASGDP 323 (478)
T ss_pred CcccccCC
Confidence 99998643
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=6.7e-88 Score=682.88 Aligned_cols=294 Identities=31% Similarity=0.576 Sum_probs=273.5
Q ss_pred CCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEecccccc
Q 018102 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSR 102 (360)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~r 102 (360)
+||++|+||+|||||||||+++++|||+|+||.+.+.++. .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999998764443 367889999999999999999999999999999999
Q ss_pred cccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEE
Q 018102 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (360)
Q Consensus 103 i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~ 182 (360)
|+|++.| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||+ |++|+
T Consensus 79 I~P~g~~-~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTGYG-EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 9999878 8999999999999999999999999999999999999986 9999999999999999999999998 99999
Q ss_pred EecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCcccccCC-CCHHHH
Q 018102 183 TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIEDK 261 (360)
Q Consensus 183 t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~-~~p~D~ 261 (360)
||||||+++..||+.|.+|||.. ...++.++++||+++|||+||+++|++. ++++||++++..++||.+ ++|+|+
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~-~~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~ 231 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIK-YDLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADV 231 (467)
T ss_pred EecchhhhhhccchhcccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHH
Confidence 99999999999999999999953 1234789999999999999999999974 589999999999999998 899999
Q ss_pred HHHHHHHhhhccccccceeccCCChHHHhhhcc----c--CCCCCHhHHHHh---cCCCcEEEEccccccccccC
Q 018102 262 SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD----Q--LPKFMQKDKELV---RNSLDFVGLNHYTSRFIAHA 327 (360)
Q Consensus 262 ~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~----~--~p~~t~ed~e~i---kg~~DFiGiNYYss~~V~~~ 327 (360)
+||++++++.++||+||+++|+||+.|++.++. + .|.+|++|+++| ++++||||||||+|.+|+..
T Consensus 232 ~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~ 306 (467)
T TIGR01233 232 RAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAF 306 (467)
T ss_pred HHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccC
Confidence 999999999999999999999999999987753 2 377999999999 48999999999999999853
No 8
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=7.4e-88 Score=683.65 Aligned_cols=294 Identities=34% Similarity=0.607 Sum_probs=273.7
Q ss_pred CCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEecccccc
Q 018102 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSR 102 (360)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~r 102 (360)
+||++|+||+|||||||||++++||||+|+||++.+.+++ .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 4 ~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR 79 (469)
T PRK13511 4 TLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW----FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSR 79 (469)
T ss_pred CCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC----CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhh
Confidence 5999999999999999999999999999999999875554 368899999999999999999999999999999999
Q ss_pred cccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEE
Q 018102 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (360)
Q Consensus 103 i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~ 182 (360)
|+|+++| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+
T Consensus 80 I~P~G~g-~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 80 IFPDGYG-EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred cCcCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 9999878 8999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred EecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCcccccCC-CCHHHH
Q 018102 183 TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIEDK 261 (360)
Q Consensus 183 t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~-~~p~D~ 261 (360)
|||||++++..||..|.+|||... ..+..++++||+++|||+||+++|++. ++++||++++..+++|.+ ++|+|+
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d~ 232 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPEDV 232 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHHH
Confidence 999999999999999999999642 234689999999999999999999974 589999999999999999 999999
Q ss_pred HHHHHHHhhhccccccceeccCCChHHHhhhcc------cCCCCCHhHHHHhcC---CCcEEEEccccccccccC
Q 018102 262 SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD------QLPKFMQKDKELVRN---SLDFVGLNHYTSRFIAHA 327 (360)
Q Consensus 262 ~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~------~~p~~t~ed~e~ikg---~~DFiGiNYYss~~V~~~ 327 (360)
+||++++++.++||+||+++|+||+.|++.++. ..|.||++|+++|++ ++||||||||+|.+|+..
T Consensus 233 ~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~ 307 (469)
T PRK13511 233 RAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAY 307 (469)
T ss_pred HHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecC
Confidence 999999999999999999999999999987742 135899999999964 689999999999999863
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.7e-88 Score=687.62 Aligned_cols=303 Identities=54% Similarity=0.979 Sum_probs=279.0
Q ss_pred CCCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEeccccc
Q 018102 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (360)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~ 101 (360)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.+++.||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 46999999999999999999999999999999999998788878888999999999999999999999999999999999
Q ss_pred ccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccE
Q 018102 102 RIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKN 180 (360)
Q Consensus 102 ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~ 180 (360)
||+|+| .| .+|+++|++|+++|++|+++||+|+|||+|||+|+||++ +|||.|+++++.|++||+.|+++|||+|++
T Consensus 83 Ri~P~g~~g-~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 83 RIFPDGFEG-KVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHSTTSSSS-SS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred heeeccccc-ccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 999998 78 999999999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred EEEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCcccccCCCCHHH
Q 018102 181 WITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIED 260 (360)
Q Consensus 181 w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~~~p~D 260 (360)
|+|+|||++.+..||+.|.+|||.. +.++.++++||+++|||+|++++|++. ++++||++++..+++|.+++++|
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~--~~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d 235 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRD--SLKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPED 235 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSS--THHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHH
T ss_pred EEeccccceeecccccccccccccc--ccchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchh
Confidence 9999999999999999999999953 678899999999999999999999986 59999999999999999988877
Q ss_pred H-HHHHHHHhhhccccccceeccCCChHHHhhhccc--CCCCCHhHHHHhcCCCcEEEEccccccccccCCCCC
Q 018102 261 K-SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSP 331 (360)
Q Consensus 261 ~-~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~ed~e~ikg~~DFiGiNYYss~~V~~~~~~~ 331 (360)
+ .||++.+++.|+||+||+++|+||..|+..++++ +|.||++|+++|++++||||||||++.+|+..+...
T Consensus 236 ~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~ 309 (455)
T PF00232_consen 236 DVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPS 309 (455)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSST
T ss_pred hHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcccc
Confidence 6 8899999999999999999999999999999987 999999999999999999999999999999887544
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.2e-87 Score=678.94 Aligned_cols=298 Identities=32% Similarity=0.592 Sum_probs=267.8
Q ss_pred CCCCCCeeeeeccccccccccCCCCCCCceeeeec---c-cCCccc----cCC--CCCccCccccccHHHHHHHHHcCCC
Q 018102 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DKS--NGDVAVDHYHRYKEDIDLIAKLGFD 92 (360)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~~--~~~~a~~~~~~~~eDi~l~~~lG~~ 92 (360)
+||++|+||+|||||||||+++++|||+|+||.+. + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999988 3 233332 222 5688999999999999999999999
Q ss_pred eEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHH
Q 018102 93 AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (360)
Q Consensus 93 ~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~ 172 (360)
+|||||+||||+|+|.+..+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999743168999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccEEEEeccccccccc-----Ccc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEe
Q 018102 173 SFGDRVKNWITINEPLQTAVN-----GYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (360)
Q Consensus 173 ~~~~~V~~w~t~NEp~~~~~~-----gy~-~g~-~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~ 245 (360)
+|||+|++|+||||||+++.. ||. .|. +|||.. .....++++||+++|||+|++++|++. ++++||++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~--~~~~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~ 237 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED--REQIMYQAAHYELVASALAVKTGHEIN---PDFQIGCM 237 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEE
Confidence 999999999999999998766 555 454 367642 234579999999999999999999975 48899999
Q ss_pred ecCcccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhccc--CCCCCHhHHHHh-cCCCcEEEEcccccc
Q 018102 246 VDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELV-RNSLDFVGLNHYTSR 322 (360)
Q Consensus 246 ~~~~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~ed~e~i-kg~~DFiGiNYYss~ 322 (360)
++..++||.+++|+|++||++++. .+.||+||+++|+||+.|++.++++ .|.||++|+++| ++++||||||||+|.
T Consensus 238 ~~~~~~~P~~~~~~d~~aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~ 316 (476)
T PRK09589 238 IAMCPIYPLTCAPNDMMMATKAMH-RRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSF 316 (476)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHH-hccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCc
Confidence 999999999999999999999885 4679999999999999999999764 488999999999 589999999999999
Q ss_pred cccc
Q 018102 323 FIAH 326 (360)
Q Consensus 323 ~V~~ 326 (360)
+|+.
T Consensus 317 ~v~~ 320 (476)
T PRK09589 317 ATKF 320 (476)
T ss_pred cccc
Confidence 9975
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.2e-86 Score=674.48 Aligned_cols=303 Identities=31% Similarity=0.570 Sum_probs=270.3
Q ss_pred CCCCCCCCCCeeeeeccccccccccCCCCCCCceeeeec---c-cCCccc----cC--CCCCccCccccccHHHHHHHHH
Q 018102 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DK--SNGDVAVDHYHRYKEDIDLIAK 88 (360)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~--~~~~~a~~~~~~~~eDi~l~~~ 88 (360)
|++.+||++|+||+|||||||||++++||||+|+||++. + .++++. .+ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 456779999999999999999999999999999999988 3 233331 22 2668899999999999999999
Q ss_pred cCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHH
Q 018102 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (360)
Q Consensus 89 lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~ 168 (360)
||+++|||||+|+||+|++.+..+|++||++|+++|++|+++||+|+|||+|||+|+||.++||||.|+++++.|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 99999999999999999974316899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccEEEEecccccc-----cccCccc-ccc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCce
Q 018102 169 TCFASFGDRVKNWITINEPLQT-----AVNGYCT-GIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGN 241 (360)
Q Consensus 169 ~~~~~~~~~V~~w~t~NEp~~~-----~~~gy~~-g~~-~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~k 241 (360)
.|+++|||+|++|+|+||||++ +..||.. |.+ ||+. ....+.++++||+++|||+||+++|+.. ++++
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~--~~~~~~~~~~h~~llAHa~A~~~~~~~~---~~~~ 235 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHE--NPEETMYQVLHHQFVASALAVKAARRIN---PEMK 235 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCe
Confidence 9999999999999999999987 7778874 765 4542 2335689999999999999999999975 4899
Q ss_pred EEEeecCcccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhcccC--CCCCHhHHHHh-cCCCcEEEEcc
Q 018102 242 IGLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQL--PKFMQKDKELV-RNSLDFVGLNH 318 (360)
Q Consensus 242 VG~~~~~~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~--p~~t~ed~e~i-kg~~DFiGiNY 318 (360)
||++++..++||.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| ++++|||||||
T Consensus 236 IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNy 314 (477)
T PRK15014 236 VGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSY 314 (477)
T ss_pred EEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcc
Confidence 9999999999999999999999998773 22359999999999999999998753 78999999999 58999999999
Q ss_pred ccccccccC
Q 018102 319 YTSRFIAHA 327 (360)
Q Consensus 319 Yss~~V~~~ 327 (360)
|+|.+|+..
T Consensus 315 Yt~~~v~~~ 323 (477)
T PRK15014 315 YMTNAVKAE 323 (477)
T ss_pred eeCeeeccC
Confidence 999999853
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=9.2e-86 Score=667.00 Aligned_cols=299 Identities=34% Similarity=0.595 Sum_probs=273.4
Q ss_pred CCCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccc------------cCC--CCCccCccccccHHHHHHHHH
Q 018102 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII------------DKS--NGDVAVDHYHRYKEDIDLIAK 88 (360)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~------------~~~--~~~~a~~~~~~~~eDi~l~~~ 88 (360)
+||++|+||+|||||||||+++++|||+|+||++++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999987555432 111 567899999999999999999
Q ss_pred cCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHH
Q 018102 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (360)
Q Consensus 89 lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~ 168 (360)
||+++|||||+|+||+|++.+..+|+++|++|+++|++|+++||+|+|||+||++|+||.++||||.|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999974326899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccEEEEecccccccccCcc-ccc-cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 018102 169 TCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (360)
Q Consensus 169 ~~~~~~~~~V~~w~t~NEp~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~ 246 (360)
.|+++|||+|++|+||||||+++..||. .|. +||+.. .....++++||+++|||+||+++|++. ++++||+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~--~~~~~~~~~hn~llAHa~A~~~~~~~~---~~~~IGi~~ 237 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGEN--QDQVKYQAAHHELVASALATKIAHEVN---PQNQVGCML 237 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCC--chHhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEE
Confidence 9999999999999999999999999996 664 578742 335589999999999999999999975 488999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHhhhccccccceeccCCChHHHhhhccc--CCCCCHhHHHHhcCCCcEEEEcccccccc
Q 018102 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFI 324 (360)
Q Consensus 247 ~~~~~~P~~~~p~D~~aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~ed~e~ikg~~DFiGiNYYss~~V 324 (360)
+..++||.+++|+|++||++++ +.+++|+||+++|+||+.|++.++++ +|.|+++|+++|++++||||||||+|.+|
T Consensus 238 ~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v 316 (474)
T PRK09852 238 AGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCA 316 (474)
T ss_pred eCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeec
Confidence 9999999999999999999877 45889999999999999999999764 68999999999999999999999999999
Q ss_pred ccC
Q 018102 325 AHA 327 (360)
Q Consensus 325 ~~~ 327 (360)
+..
T Consensus 317 ~~~ 319 (474)
T PRK09852 317 SAE 319 (474)
T ss_pred ccC
Confidence 863
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=1.3e-84 Score=653.18 Aligned_cols=296 Identities=47% Similarity=0.886 Sum_probs=279.6
Q ss_pred CCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEeccccccc
Q 018102 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (360)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri 103 (360)
||++|+||+||||||+||+++++|||+|+||.+.+.++++.++.++++||||||+|+|||++|++||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999987666665556788999999999999999999999999999999999
Q ss_pred ccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEE
Q 018102 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWIT 183 (360)
Q Consensus 104 ~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t 183 (360)
+|+++| .+|+++|++|+++|++|+++||+|+|||+|||+|.||.++ |||.++++++.|++||+.|++|||++|++|+|
T Consensus 81 ~p~g~~-~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGTG-PVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCCC-CcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 999768 8999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCcccccCCCCHHHHHH
Q 018102 184 INEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSA 263 (360)
Q Consensus 184 ~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~~~p~D~~a 263 (360)
+||||+.+..||..|.+||+.. +....++++||+++|||+|++++|++. ++++||++++..++||.+++|+|+.|
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~--~~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~a 233 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLR--DLRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAA 233 (427)
T ss_pred ecCcceecccchhhccCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHH
Confidence 9999999999999999999853 234579999999999999999999975 48999999999999999999999999
Q ss_pred HHHHHhhhccccccceeccCCChHHHhhhcccCCCCCHhHHHHhcCCCcEEEEccccccccccC
Q 018102 264 AARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHA 327 (360)
Q Consensus 264 a~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~ed~e~ikg~~DFiGiNYYss~~V~~~ 327 (360)
|++++++.++||+||+++|+||..|++.++. +|.||++|+++|++++||||||||+|.+|+..
T Consensus 234 a~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 234 ARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred HHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 9999999999999999999999999999974 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.41 E-value=4.5e-13 Score=133.06 Aligned_cols=109 Identities=23% Similarity=0.444 Sum_probs=88.8
Q ss_pred cccHHHHHHHHHcCCCeEEe-cccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhc----
Q 018102 77 HRYKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---- 151 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~---- 151 (360)
..+++|+++|+++|+|++|+ .++|+++||++ | ++|+ ..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G-~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-G-QYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-T-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-C-eeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 46899999999999999996 57999999998 9 9998 7789999999999999999999999999998653
Q ss_pred -----------CC-----CCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecccccc
Q 018102 152 -----------GG-----WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQT 190 (360)
Q Consensus 152 -----------gg-----~~~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~~~ 190 (360)
|+ ..+|...+.+.++++.+++||++. |..|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 22 124677888899999999999985 8889999999874
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.37 E-value=2.3e-12 Score=121.33 Aligned_cols=110 Identities=22% Similarity=0.329 Sum_probs=91.5
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccc-cCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCC-
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIF-PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL- 155 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~-P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~- 155 (360)
..++|++.|+++|+|++|+.|.|..++ |.+.+ .++...++.++++|+.|.++||.++|+||+. |.|.... +++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~-~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY-NYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT-SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc-cccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 568999999999999999999998888 56545 6899999999999999999999999999974 7774332 2333
Q ss_pred ChHHHHHHHHHHHHHHHHhCC--CccEEEEeccccccc
Q 018102 156 NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQTA 191 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~~--~V~~w~t~NEp~~~~ 191 (360)
.....+.|.++++.+++||++ .|..|.++|||+...
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 355688899999999999955 588999999999753
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.81 E-value=1.5e-08 Score=95.61 Aligned_cols=84 Identities=18% Similarity=0.384 Sum_probs=72.2
Q ss_pred ccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeE--EEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 018102 98 ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP--YVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 98 i~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p--~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
..|++++|++ | .+|+ +..|.+++.|+++||++ -..+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~-G-~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR-G-QFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC-C-ccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999998 9 9998 66789999999999995 3356677899998742 2 56778999999999999999
Q ss_pred CCccEEEEecccccc
Q 018102 176 DRVKNWITINEPLQT 190 (360)
Q Consensus 176 ~~V~~w~t~NEp~~~ 190 (360)
++|..|.++|||...
T Consensus 72 g~i~~wdV~NE~~~~ 86 (254)
T smart00633 72 GKIYAWDVVNEALHD 86 (254)
T ss_pred CcceEEEEeeecccC
Confidence 999999999999864
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=4.6e-08 Score=102.86 Aligned_cols=118 Identities=20% Similarity=0.400 Sum_probs=93.6
Q ss_pred cHHHHHHHHHcCCCeEEe-cccccccccCCCCCcCChhhHHHHHHH-HHHHHHCCCeEEEEe-ccCCCchhhHhhc----
Q 018102 79 YKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNI-IDALLQKGIQPYVTL-YHWDLPLHLHESM---- 151 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~~n~~~l~~y~~~-i~~l~~~gi~p~vtL-~h~~~P~~l~~~~---- 151 (360)
+++|++.||++|+|++|. -++|++++|+. | ++|+. +.|.. ++.+.+.||.+++.. .....|.|+..+|
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G-~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE-G-KFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc-c-ccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 667899999999999999 55999999997 9 99985 67777 999999999999998 7789999998875
Q ss_pred -----------CCCCChH-HHHHHHHHHHH----HHHH-hCCC--ccEEEEeccccc-ccccCccccccC
Q 018102 152 -----------GGWLNKE-IVKYFEIYADT----CFAS-FGDR--VKNWITINEPLQ-TAVNGYCTGIFA 201 (360)
Q Consensus 152 -----------gg~~~~~-~~~~F~~ya~~----~~~~-~~~~--V~~w~t~NEp~~-~~~~gy~~g~~~ 201 (360)
|+|.+-. +-..|.+|++. +.+| |++. |-.|.+-||-.. .+++.|+...|+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 5664322 22246666665 8888 8875 778999999877 566666555544
No 18
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.37 E-value=1.5e-05 Score=78.09 Aligned_cols=142 Identities=14% Similarity=0.193 Sum_probs=88.8
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc---CCCchhhHhhcCCCCC
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH---WDLPLHLHESMGGWLN 156 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h---~~~P~~l~~~~gg~~~ 156 (360)
++=+++||+.|+|++|+-+ | +-|...| ..| ++.-..+..+++++||+++|++|. |.-|.--. .-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g-~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGG-YND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTT-TTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccc-cCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCCC
Confidence 3447899999999999988 5 4555325 555 577889999999999999999984 22231111 1256877
Q ss_pred ---hHHHHHHHHHHHHHHHHhCC---CccEEEEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 018102 157 ---KEIVKYFEIYADTCFASFGD---RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVY 230 (360)
Q Consensus 157 ---~~~~~~F~~ya~~~~~~~~~---~V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~ 230 (360)
.+..+.-.+|.+.+.+.+++ .++++.+-||.|.-.+ +|.|.. .-+.-+-.++.|-.+||
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~-----~~~~~~a~ll~ag~~AV--- 163 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP-----SNWDNLAKLLNAGIKAV--- 163 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT-----T-HHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc-----cCHHHHHHHHHHHHHHH---
Confidence 56777888888888887765 5889999999986432 344331 12333445566555554
Q ss_pred HHhhcCCCCceEEEeec
Q 018102 231 QRKYKDKQGGNIGLVVD 247 (360)
Q Consensus 231 k~~~~~~~~~kVG~~~~ 247 (360)
|+.. ++.||.+.+.
T Consensus 164 r~~~---p~~kV~lH~~ 177 (332)
T PF07745_consen 164 REVD---PNIKVMLHLA 177 (332)
T ss_dssp HTHS---STSEEEEEES
T ss_pred HhcC---CCCcEEEEEC
Confidence 4453 4788876664
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.29 E-value=3.1e-06 Score=87.23 Aligned_cols=141 Identities=22% Similarity=0.306 Sum_probs=79.7
Q ss_pred cHHHHHHH-HHcCCCeEEec--c--ccccccc-CCCCC-cCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhc
Q 018102 79 YKEDIDLI-AKLGFDAYRFS--I--SWSRIFP-DGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM 151 (360)
Q Consensus 79 ~~eDi~l~-~~lG~~~~R~s--i--~W~ri~P-~~~g~-~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 151 (360)
+++.+..+ +++||+.+||- + +..-..+ ++.|. .+|+ ...|.++|.|+++||+|+|.|-. +|.++....
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 45555544 59999999975 2 2222222 22231 2787 77899999999999999999974 777765321
Q ss_pred ------CCCC-ChHHHHHHHHHHHHHHHHhCC-----Ccc--EEEEecccccccccCccccccCCCCCCCCCchHHHHHH
Q 018102 152 ------GGWL-NKEIVKYFEIYADTCFASFGD-----RVK--NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAH 217 (360)
Q Consensus 152 ------gg~~-~~~~~~~F~~ya~~~~~~~~~-----~V~--~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~h 217 (360)
.|+. .|+..+.|.++++.+++|+.+ .|. +|++||||++..+. ..+ + ...| .
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~-------~~~----~-~~ey---~ 180 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFW-------WDG----T-PEEY---F 180 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTS-------GGG------HHHH---H
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCccccc-------CCC----C-HHHH---H
Confidence 2232 356788888888777766543 355 57999999985321 111 1 1111 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEe
Q 018102 218 HQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (360)
Q Consensus 218 n~l~Aha~Av~~~k~~~~~~~~~kVG~~ 245 (360)
.+ ...+++.+|++. |..|||-.
T Consensus 181 ~l---y~~~~~~iK~~~---p~~~vGGp 202 (486)
T PF01229_consen 181 EL---YDATARAIKAVD---PELKVGGP 202 (486)
T ss_dssp HH---HHHHHHHHHHH----TTSEEEEE
T ss_pred HH---HHHHHHHHHHhC---CCCcccCc
Confidence 23 234566677765 48899865
No 20
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=2.9e-06 Score=85.49 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=85.7
Q ss_pred Ccccccc-----HHHHHHHHHcCCCeEEecccccccccCC--CCCcCC-hhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 73 VDHYHRY-----KEDIDLIAKLGFDAYRFSISWSRIFPDG--LGTKIN-MEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 73 ~~~~~~~-----~eDi~l~~~lG~~~~R~si~W~ri~P~~--~g~~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
.-....| ++|+..||+.|||++|+.|.|..+.+.. .. .+. ...+...+++|+.++++||.+++.||+..-+
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p-~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNP-YLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred ccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCC-CeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 3344555 8999999999999999999855555432 11 333 4556699999999999999999999986633
Q ss_pred hhhHhhc---CCCC-ChHHHHHHHHHHHHHHHHhCCC--ccEEEEeccccc
Q 018102 145 LHLHESM---GGWL-NKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (360)
Q Consensus 145 ~~l~~~~---gg~~-~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~~ 189 (360)
.--.+.. +.+. ....++++.+-++.++.||++. |-...++|||+.
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 3222221 1122 2457799999999999999984 666889999996
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.97 E-value=7.1e-05 Score=73.15 Aligned_cols=123 Identities=23% Similarity=0.366 Sum_probs=87.3
Q ss_pred CCCCCeeeeeccccccccccCCCCCCCceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEe--ccccc
Q 018102 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRF--SISWS 101 (360)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~--si~W~ 101 (360)
...+|.+|+|.++.++++.. . | ..+-..-||.+-. ...|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~------------------~----------------~----~~~~~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP------------------R----------------Y----RELFAKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH------------------H----------------H----HHHHHHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH------------------H----------------H----HHHHHHhCCeeeeccccchh
Confidence 45788999999999887731 0 1 1111122444444 47899
Q ss_pred ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEE--EeccCCCchhhHhhcCCCCChH---HHHHHHHHHHHHHHHhCC
Q 018102 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV--TLYHWDLPLHLHESMGGWLNKE---IVKYFEIYADTCFASFGD 176 (360)
Q Consensus 102 ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~v--tL~h~~~P~~l~~~~gg~~~~~---~~~~F~~ya~~~~~~~~~ 176 (360)
.++|.+ | .+|+ +..|.+++-++++||++-. .+.|--.|.|+... ..+...+ ......+|.+.+++||++
T Consensus 48 ~~e~~~-g-~~~~---~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~ 121 (320)
T PF00331_consen 48 SIEPEP-G-RFNF---ESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKD 121 (320)
T ss_dssp HHESBT-T-BEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhcCCC-C-ccCc---cchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcc
Confidence 999997 8 9998 5679999999999999874 34466789999863 1233333 788889999999999994
Q ss_pred --CccEEEEecccccc
Q 018102 177 --RVKNWITINEPLQT 190 (360)
Q Consensus 177 --~V~~w~t~NEp~~~ 190 (360)
+|..|-+.|||-..
T Consensus 122 ~g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 122 KGRIYAWDVVNEAIDD 137 (320)
T ss_dssp TTTESEEEEEES-B-T
T ss_pred ccceEEEEEeeecccC
Confidence 89999999999764
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.93 E-value=5e-05 Score=74.19 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=76.9
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec--------cCCCchhhHh
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLHE 149 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--------h~~~P~~l~~ 149 (360)
.|++-++.||++|+|++-+-|.|.-.||.+ | ++|+++..=.+.+|+.|+++||-+++-.- ..++|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-G-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-T-B---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-C-cccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 466779999999999999999999999998 9 99999988899999999999999887542 2469999987
Q ss_pred hcCCC---CChHHHHHHHHHHHHHHHHhCC-------CccEEEEecccc
Q 018102 150 SMGGW---LNKEIVKYFEIYADTCFASFGD-------RVKNWITINEPL 188 (360)
Q Consensus 150 ~~gg~---~~~~~~~~F~~ya~~~~~~~~~-------~V~~w~t~NEp~ 188 (360)
+.+.. .++...+.-.+|.+.+++...+ -|...++=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 63332 2466777777777777777654 256677888854
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=97.29 E-value=0.0017 Score=70.17 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=90.1
Q ss_pred cCccccc-----cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-------
Q 018102 72 AVDHYHR-----YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY------- 139 (360)
Q Consensus 72 a~~~~~~-----~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~------- 139 (360)
+.-||-| |++=++.||++|+|++-.=|.|.--||++ | ++|++|..=..++|+.+.+.||-+|+-.-
T Consensus 49 G~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw 126 (840)
T PLN03059 49 GSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-G-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW 126 (840)
T ss_pred eCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCC-C-eeeccchHHHHHHHHHHHHcCCEEEecCCcceeeee
Confidence 3456754 55558999999999999999999999997 9 99999999999999999999999888643
Q ss_pred -cCCCchhhHhhcCCC----CChHHHHHHHHHHHHHHHHhC---------CCccEEEEecccc
Q 018102 140 -HWDLPLHLHESMGGW----LNKEIVKYFEIYADTCFASFG---------DRVKNWITINEPL 188 (360)
Q Consensus 140 -h~~~P~~l~~~~gg~----~~~~~~~~F~~ya~~~~~~~~---------~~V~~w~t~NEp~ 188 (360)
..++|.||... .|. .++.+.++-.+|.+.++...+ +-|-...+=||-.
T Consensus 127 ~~GGlP~WL~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 127 NFGGFPVWLKYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred cCCCCchhhhcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 46899999854 342 246677777777777777773 2366677888843
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.13 E-value=0.00056 Score=68.13 Aligned_cols=99 Identities=15% Similarity=0.340 Sum_probs=75.4
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-c-----------CCC
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~ 143 (360)
+.-.+..++.+|++|+..+-+.+=|.-+|+++++ ++|+ +.|+++++.+++.|++..+.|. | ..+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~-~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQ-QYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTT-B------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCC-ccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 3467889999999999999999999999999778 9998 6699999999999999888763 3 478
Q ss_pred chhhHhh-----------cCC--------CCChHHHHHHHHHHHHHHHHhCCCc
Q 018102 144 PLHLHES-----------MGG--------WLNKEIVKYFEIYADTCFASFGDRV 178 (360)
Q Consensus 144 P~~l~~~-----------~gg--------~~~~~~~~~F~~ya~~~~~~~~~~V 178 (360)
|.|+.+. .|. |....+++.|.+|-+.+.++|.+..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998753 122 3333348999999999999987754
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.07 E-value=0.0033 Score=60.62 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCCeEEecc--ccccc-c----cCC-----C-C----CcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC
Q 018102 81 EDIDLIAKLGFDAYRFSI--SWSRI-F----PDG-----L-G----TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL 143 (360)
Q Consensus 81 eDi~l~~~lG~~~~R~si--~W~ri-~----P~~-----~-g----~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~ 143 (360)
.-++..++.|||.+|+.+ .|... . |.. + + +.+|.+-+++.+++|+.|.++||++.+.+.| +.
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~ 112 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GC 112 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HH
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CC
Confidence 346788999999999998 44433 1 111 0 1 1378899999999999999999999988775 22
Q ss_pred chhhHhhcCCCCC---hHHHHHHHHHHHHHHHHhCCC-ccEEEEeccc
Q 018102 144 PLHLHESMGGWLN---KEIVKYFEIYADTCFASFGDR-VKNWITINEP 187 (360)
Q Consensus 144 P~~l~~~~gg~~~---~~~~~~F~~ya~~~~~~~~~~-V~~w~t~NEp 187 (360)
|. .+ +.|.. .-..+.-.+|.+.|++||+.. -..|++-||-
T Consensus 113 ~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 113 PY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred cc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 32 11 44432 234677788999999999998 4779999985
No 26
>PLN02803 beta-amylase
Probab=96.96 E-value=0.0024 Score=65.42 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=77.5
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-c-----------CCCc
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDLP 144 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~P 144 (360)
.-.+..++.+|++|+..+-+.+=|--+|+++++ ++|| ..|+++++.+++.|++..+.|. | ..+|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPM-KYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 446778999999999999999999999998778 9999 5599999999999999877765 3 3699
Q ss_pred hhhHhh--------c---CC----------------CCChHHHHHHHHHHHHHHHHhCCCc
Q 018102 145 LHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRV 178 (360)
Q Consensus 145 ~~l~~~--------~---gg----------------~~~~~~~~~F~~ya~~~~~~~~~~V 178 (360)
.|+.+. | .| +..+..++.|.+|-+-+.+.|.+..
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 243 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL 243 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 998753 1 11 1223346778888888888877654
No 27
>PLN02161 beta-amylase
Probab=96.90 E-value=0.004 Score=63.50 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=84.5
Q ss_pred CccccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-cC----------
Q 018102 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HW---------- 141 (360)
Q Consensus 73 ~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h~---------- 141 (360)
..+..-.+..++.+|.+|+..+-+.+=|--+|+++++ ++|| ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPL-EFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 4556667788999999999999999999999998878 9999 5599999999999999877765 32
Q ss_pred -CCchhhHhh--------c---CC----------------CCChHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 142 -DLPLHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 142 -~~P~~l~~~--------~---gg----------------~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
.+|.|+.+. | .| +..+..++.|.+|-+-+.++|.+... -|+.|..+
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 599998752 0 12 11233467888888888888877553 24444433
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.87 E-value=0.0027 Score=63.01 Aligned_cols=100 Identities=19% Similarity=0.315 Sum_probs=55.7
Q ss_pred HcCCCeEEecc---c------------ccccc--cCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhh
Q 018102 88 KLGFDAYRFSI---S------------WSRIF--PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (360)
Q Consensus 88 ~lG~~~~R~si---~------------W~ri~--P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 150 (360)
.+|++.+|+.| + |.|.+ +..+| .+|+.+=+-=+.++++++++|+.-++.. -+..|.|+..-
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg-~yDW~~D~gQrwfL~~Ak~rGV~~f~aF-SNSPP~~MT~N 135 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADG-SYDWDADAGQRWFLKAAKERGVNIFEAF-SNSPPWWMTKN 135 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS--B-TTSSHHHHHHHHHHHHTT---EEEE--SSS-GGGSSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCC-CcCCCCCHHHHHHHHHHHHcCCCeEEEe-ecCCCHHHhcC
Confidence 48999999877 3 33432 22346 7887544455668999999999988744 46777776542
Q ss_pred ---cCC-----CCChHHHHHHHHHHHHHHHHhCC---CccEEEEeccccc
Q 018102 151 ---MGG-----WLNKEIVKYFEIYADTCFASFGD---RVKNWITINEPLQ 189 (360)
Q Consensus 151 ---~gg-----~~~~~~~~~F~~ya~~~~~~~~~---~V~~w~t~NEp~~ 189 (360)
+|+ =+.++..+.|++|-..|+++|.. .+++-.++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 111 13477899999999999999944 4888999999994
No 29
>PLN00197 beta-amylase; Provisional
Probab=96.85 E-value=0.0046 Score=63.58 Aligned_cols=99 Identities=15% Similarity=0.284 Sum_probs=78.0
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-c-----------CCCc
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDLP 144 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~P 144 (360)
.-.+..++.+|++|+..+-+.+=|--+|+++++ ++|| ..|+++++.+++.|++..+.|. | ..+|
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~-~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPG-VYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 347788999999999999999999999998878 9999 5599999999999999887765 3 3699
Q ss_pred hhhHhh--------c---CC----------------CCChHHHHHHHHHHHHHHHHhCCCcc
Q 018102 145 LHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRVK 179 (360)
Q Consensus 145 ~~l~~~--------~---gg----------------~~~~~~~~~F~~ya~~~~~~~~~~V~ 179 (360)
.|+.+. | .| +..+-.++.|.+|-+-+.++|.+...
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~ 264 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG 264 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 998763 0 11 11222368888888888888777543
No 30
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.72 E-value=0.0087 Score=57.57 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=62.4
Q ss_pred cccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCC-
Q 018102 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG- 153 (360)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg- 153 (360)
....+..|+.+||++|+|++|++-- |. + .++++.|-+.||-++.-+.....-.|-. .+-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h~-----p~------~-------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~ 93 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHHY-----PP------S-------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNC 93 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETTS-------------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCT
T ss_pred CHHHHHHHHHHHHhcCcceEEcccc-----cC------c-------HHHHHHHhhcCCEEEEeccccccCcccc--CCcc
Confidence 3567899999999999999998431 21 1 3556678888999887765322111210 010
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhCCC--ccEEEEeccc
Q 018102 154 ---WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEP 187 (360)
Q Consensus 154 ---~~~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp 187 (360)
-.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135778888889999999999986 8889999998
No 31
>PLN02801 beta-amylase
Probab=96.64 E-value=0.01 Score=60.52 Aligned_cols=100 Identities=12% Similarity=0.308 Sum_probs=78.9
Q ss_pred cccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-c-----------CC
Q 018102 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WD 142 (360)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~ 142 (360)
+-.-.+..++.+|++|+..+-+.+=|--+|.++++ ++|| +.|+++++.+++.|++..+.|. | ..
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~-~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPK-QYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-ccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 34446788999999999999999999999998778 9999 5599999999999999877665 3 36
Q ss_pred CchhhHhh--------c---CC----------------CCChHHHHHHHHHHHHHHHHhCCCc
Q 018102 143 LPLHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRV 178 (360)
Q Consensus 143 ~P~~l~~~--------~---gg----------------~~~~~~~~~F~~ya~~~~~~~~~~V 178 (360)
+|.|+.+. | .| +..+..++.|.+|-+-+.++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99998752 0 12 1123357888888888888887754
No 32
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.0068 Score=58.64 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=75.1
Q ss_pred HHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEE-E-eccCCCchhhHhhcCCCCChHHHHHHH
Q 018102 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV-T-LYHWDLPLHLHESMGGWLNKEIVKYFE 164 (360)
Q Consensus 87 ~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~v-t-L~h~~~P~~l~~~~gg~~~~~~~~~F~ 164 (360)
++.+.=+-==-.-|.-|+|+. | .+|+++ =|.+.+-++++||..-- | +.|--.|.|+.. --+..+...+...
T Consensus 56 re~n~iTpenemKwe~i~p~~-G-~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e 128 (345)
T COG3693 56 RECNQITPENEMKWEAIEPER-G-RFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVE 128 (345)
T ss_pred hhhcccccccccccccccCCC-C-ccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHH
Confidence 444443444456799999986 9 999844 68999999999997543 2 235567889863 2366788999999
Q ss_pred HHHHHHHHHhCCCccEEEEeccccc
Q 018102 165 IYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 165 ~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
++...|+.||++.|..|=+.|||.-
T Consensus 129 ~hI~tV~~rYkg~~~sWDVVNE~vd 153 (345)
T COG3693 129 EHIKTVVGRYKGSVASWDVVNEAVD 153 (345)
T ss_pred HHHHHHHHhccCceeEEEecccccC
Confidence 9999999999999999999999976
No 33
>PLN02705 beta-amylase
Probab=96.42 E-value=0.013 Score=60.98 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=77.2
Q ss_pred cccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-c-----------CC
Q 018102 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WD 142 (360)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~ 142 (360)
+-.-.+..++.+|++|+..+-+.+=|--+|+++++ ++|| ..|+++++.+++.|++..+.|. | ..
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~-~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQ-KYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 33457778999999999999999999999998778 9999 5599999999999999777765 3 36
Q ss_pred CchhhHhh--------c---CC--------C--------CChHHHHHHHHHHHHHHHHhCCC
Q 018102 143 LPLHLHES--------M---GG--------W--------LNKEIVKYFEIYADTCFASFGDR 177 (360)
Q Consensus 143 ~P~~l~~~--------~---gg--------~--------~~~~~~~~F~~ya~~~~~~~~~~ 177 (360)
+|.|+.+. | .| | ..+..++.|.+|.+-+.+.|.+.
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99998752 0 11 1 12334688888888877777664
No 34
>PLN02905 beta-amylase
Probab=96.31 E-value=0.021 Score=59.65 Aligned_cols=101 Identities=13% Similarity=0.276 Sum_probs=78.7
Q ss_pred CccccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-c-----------
Q 018102 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H----------- 140 (360)
Q Consensus 73 ~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h----------- 140 (360)
.....-.+..++.+|.+|+..+-+.+=|--+|+++++ ++|| ..|+++++.+++.|++..+.|. |
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~-~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQ-EYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCC-cCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 3455567788999999999999999999999998878 9999 5599999999999999877765 3
Q ss_pred CCCchhhHhh--------c---CC--------C--------CChHHHHHHHHHHHHHHHHhCCC
Q 018102 141 WDLPLHLHES--------M---GG--------W--------LNKEIVKYFEIYADTCFASFGDR 177 (360)
Q Consensus 141 ~~~P~~l~~~--------~---gg--------~--------~~~~~~~~F~~ya~~~~~~~~~~ 177 (360)
..+|.|+.+. | .| | ..+..++.|.+|.+-+.++|.+.
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3699998752 1 11 1 12334678888888777777664
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.29 E-value=0.018 Score=60.97 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHh-------
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE------- 149 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~------- 149 (360)
..+..|+++||++|+|++|++- .|. + ..+++.|-+.||-++.-+.-+....|+..
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~------~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY------S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC------C-------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 3467899999999999999952 222 2 35678888999988765543322222210
Q ss_pred hcCCCC----ChHHHHHHHHHHHHHHHHhCCC--ccEEEEecccc
Q 018102 150 SMGGWL----NKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (360)
Q Consensus 150 ~~gg~~----~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~ 188 (360)
....|. +++..+.+.+-++.+++|++++ |-.|.+.||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001222 3567788899999999999987 77899999974
No 36
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.38 Score=46.39 Aligned_cols=144 Identities=14% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHH-HHHHHHcCCCeEEecccccccccC-CC---CCcCChhhHHHHHHHHHHHHHCCCeEEEEec---cCCCchhhHhhc
Q 018102 80 KED-IDLIAKLGFDAYRFSISWSRIFPD-GL---GTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESM 151 (360)
Q Consensus 80 ~eD-i~l~~~lG~~~~R~si~W~ri~P~-~~---g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---h~~~P~~l~~~~ 151 (360)
++| ++.+|..|+|.+|+-| |..=..+ +. | .-| .++---++-.+++.+||++++..| ||.=|..- .+-
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~ygg-Gnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kP 139 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGG-GNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKP 139 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCC-Ccc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCc
Confidence 444 6899999999999976 3221111 11 2 222 245567788889999999999998 45555431 122
Q ss_pred CCCCC---hHHHHHHHHHHHHHHHHhC---CCccEEEEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHH
Q 018102 152 GGWLN---KEIVKYFEIYADTCFASFG---DRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAA 225 (360)
Q Consensus 152 gg~~~---~~~~~~F~~ya~~~~~~~~---~~V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~ 225 (360)
..|.+ ...-.+--+|.+.+...+. -....-.+=||-|-- + .||-|... . +.-+-.++.+
T Consensus 140 kaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~g----f---lwp~Ge~~-~----f~k~a~L~n~--- 204 (403)
T COG3867 140 KAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGG----F---LWPDGEGR-N----FDKMAALLNA--- 204 (403)
T ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCc----e---eccCCCCc-C----hHHHHHHHHH---
Confidence 35654 2223333445555555554 457778899997742 2 25555431 1 2222234444
Q ss_pred HHHHHHHhhcCCCCceEEEee
Q 018102 226 AFSVYQRKYKDKQGGNIGLVV 246 (360)
Q Consensus 226 Av~~~k~~~~~~~~~kVG~~~ 246 (360)
+++++|+.. +..+|.+.+
T Consensus 205 g~~avrev~---p~ikv~lHl 222 (403)
T COG3867 205 GIRAVREVS---PTIKVALHL 222 (403)
T ss_pred HhhhhhhcC---CCceEEEEe
Confidence 445566654 366766554
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.99 E-value=0.048 Score=48.31 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=69.2
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCC-C-----cCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhh
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-T-----KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-~-----~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 150 (360)
.+|+++++.|+++|++++=+. |+...-...+ + .+.....+.++.+++++.+.||++++.|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 358999999999999997432 5444321100 0 122234478999999999999999999984 4556552
Q ss_pred cCCCCCh-HHHHHHHHHHHHHHHHhCCC--ccEEEEecccccc
Q 018102 151 MGGWLNK-EIVKYFEIYADTCFASFGDR--VKNWITINEPLQT 190 (360)
Q Consensus 151 ~gg~~~~-~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~~~ 190 (360)
.+. .-++.=..-++.+.++||.+ +..|-+-.|+.-.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~ 133 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY 133 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc
Confidence 121 12333345777888899885 5667777776543
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.075 Score=55.89 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=84.9
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec--------cCCCchhhHh
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLHE 149 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--------h~~~P~~l~~ 149 (360)
.|++=++.+|++|+|++-.=+.|.--||.+ | ++|++|.-=...+|..+.+.|+-+++-+- +-++|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-G-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-C-cccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 355668999999999999999999999998 8 99999987788899999999998777543 6789988887
Q ss_pred hcCC-C--CChHHHHHHHHHHHHHHHHhC-------CCccEEEEecccc
Q 018102 150 SMGG-W--LNKEIVKYFEIYADTCFASFG-------DRVKNWITINEPL 188 (360)
Q Consensus 150 ~~gg-~--~~~~~~~~F~~ya~~~~~~~~-------~~V~~w~t~NEp~ 188 (360)
.-|. + .|+.+..+..+|.+.++...+ .=|..-.+=||-.
T Consensus 128 ~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 VPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred CCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 5232 2 367788888999998887433 1245556666643
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.59 E-value=0.15 Score=57.49 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=63.8
Q ss_pred cccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec---cCCCchhhHhhc
Q 018102 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESM 151 (360)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---h~~~P~~l~~~~ 151 (360)
....++.||++||++|+|++|+|. .|. + .++.+.|=+.||-++--.. |.-.|. ..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~sH-----yP~------~-------p~fydlcDe~GilV~dE~~~e~hg~~~~---~~- 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCSH-----YPN------H-------PLWYELCDRYGLYVVDEANIETHGMVPM---NR- 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCC------C-------HHHHHHHHHcCCEEEEecCccccCCccc---cC-
Confidence 445678999999999999999952 232 1 2345778888998876542 211110 00
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecccc
Q 018102 152 GGWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (360)
Q Consensus 152 gg~~~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~ 188 (360)
...+++..+.+.+=++.+++|.+++ |-.|.+.||+.
T Consensus 427 -~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 -LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124667778888889999999987 88899999974
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.73 E-value=0.25 Score=55.67 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=63.1
Q ss_pred cccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec---c-CCCchhhHhh
Q 018102 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---H-WDLPLHLHES 150 (360)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---h-~~~P~~l~~~ 150 (360)
....++.|+++||++|+|++|++. .|.. ..+.+.|-+.||-++--.. | |.... .
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH-----yP~~-------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~ 410 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH-----YPND-------------PRFYELCDIYGLFVMAETDVESHGFANVG----D 410 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCCC-------------HHHHHHHHHCCCEEEECCcccccCccccc----c
Confidence 346788999999999999999962 3332 2456778889998776431 1 11100 0
Q ss_pred cCCC--CChHHHHHHHHHHHHHHHHhCCC--ccEEEEecccc
Q 018102 151 MGGW--LNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (360)
Q Consensus 151 ~gg~--~~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~ 188 (360)
+ .+ ..+...+.|.+=++.+++|.+++ |-.|.+-||..
T Consensus 411 ~-~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 411 I-SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred c-ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 0 11 23555677777789999999987 88899999973
No 41
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=93.05 E-value=0.16 Score=50.77 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=73.9
Q ss_pred HHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCC--hHHHHH
Q 018102 85 LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN--KEIVKY 162 (360)
Q Consensus 85 l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~--~~~~~~ 162 (360)
.-+|+||+-+|.---|.-++.+. -+++ .++++++|.+...|+.-+.+-.||..+.-....|.+-.. ....+.
T Consensus 13 ~~~Ei~v~yi~~~~v~h~~~q~~---~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 13 TDDEIQVNYIRRHGVWHVNAQKL---FYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhhceeeehhcceeeeeeccc---cCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 34789999999988888343332 4565 889999999999995555566677776554443333222 347899
Q ss_pred HHHHHHHHHHHhCCC-c--cEEEEeccccccc
Q 018102 163 FEIYADTCFASFGDR-V--KNWITINEPLQTA 191 (360)
Q Consensus 163 F~~ya~~~~~~~~~~-V--~~w~t~NEp~~~~ 191 (360)
++.++.-|+.+||-+ | -.+.++||||..+
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCccc
Confidence 999999999999964 3 3467999999874
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.60 E-value=0.55 Score=51.46 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=66.1
Q ss_pred CccccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcC
Q 018102 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (360)
Q Consensus 73 ~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~g 152 (360)
+..+..+..|+++||++|+|++|.| =.| +. ..+.+.|-+.||=++--..+.. ++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP-------~~------~~~ydLcDelGllV~~Ea~~~~--------~~ 370 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYP-------NS------EEFYDLCDELGLLVIDEAMIET--------HG 370 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCC-------CC------HHHHHHHHHhCcEEEEecchhh--------cC
Confidence 4455669999999999999999998 223 32 4456677788998886554311 13
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCC--ccEEEEeccccc
Q 018102 153 GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (360)
Q Consensus 153 g~~~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~~ 189 (360)
+...++..+...+=++.+++|-+++ |-.|..-||.+.
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 3345666667777788899998886 888999999663
No 43
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.57 E-value=0.098 Score=53.21 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=79.3
Q ss_pred cHHHHHHHHHcCCCeEEecccc-cccccCCCCCcCChhh-HHHHHHHHHHHHHCCCeEEEEec----cCCCchhhHhhcC
Q 018102 79 YKEDIDLIAKLGFDAYRFSISW-SRIFPDGLGTKINMEG-ITFYNNIIDALLQKGIQPYVTLY----HWDLPLHLHESMG 152 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~~n~~~-l~~y~~~i~~l~~~gi~p~vtL~----h~~~P~~l~~~~g 152 (360)
.+.|+..++.+|++..|++|.= ..+- +..| ..|.+. +.+.+.+++.+...+|++++||. |++--.|-..=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~-d~~G-~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCR-DKEG-YRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchh-hhhc-eecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 4578899999999999999642 3322 2237 677665 89999999999999999999986 3222222110001
Q ss_pred C------CCChHHHHHHHHHHHHHHHHhCCC--ccEEEEeccccc
Q 018102 153 G------WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (360)
Q Consensus 153 g------~~~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~~ 189 (360)
+ ...+.+...|.+|++.+++.|+.. +--|+.-|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 235678889999999999999876 556999999766
No 44
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=88.44 E-value=4.2 Score=39.46 Aligned_cols=90 Identities=21% Similarity=0.432 Sum_probs=61.7
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCC-
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW- 154 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~- 154 (360)
..||.+--+++++.|+|.+=+.= +--.+ - .+..+-|+.+.++-+.++.+||++.+++. |..|.-+ ||-
T Consensus 56 ~~R~~~YARllASiGINgvvlNN----VNa~~-~-~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----ggL~ 124 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNN----VNANP-K-LLTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GGLP 124 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-----SS--C-G-GGSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS-S
T ss_pred hhHHHHHHHHHhhcCCceEEecc----cccCh-h-hcCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CCcC
Confidence 46788888999999999865421 10000 1 23334567788999999999999999997 7888754 553
Q ss_pred ----CChHHHHHHHHHHHHHHHHhCC
Q 018102 155 ----LNKEIVKYFEIYADTCFASFGD 176 (360)
Q Consensus 155 ----~~~~~~~~F~~ya~~~~~~~~~ 176 (360)
.+++++..|.+=++.+.++.-|
T Consensus 125 TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 125 TADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5789999999999999998755
No 45
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=3.8 Score=42.14 Aligned_cols=136 Identities=17% Similarity=0.300 Sum_probs=84.1
Q ss_pred ccccHHHHHHHHHcCCCeEEec----ccccccccCC----------------------------CCCcCCh----hhHHH
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFS----ISWSRIFPDG----------------------------LGTKINM----EGITF 119 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~s----i~W~ri~P~~----------------------------~g~~~n~----~~l~~ 119 (360)
|.+|+..|+-|+-.|+|..=.. +-|.+|+-.- .| .+.. ..+-.
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgG-pLs~aw~~~ql~L 155 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGG-PLSPAWMLNQLLL 155 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCC-CCCHHHHHHHHHH
Confidence 5789999999999999965433 2355555331 02 2221 12334
Q ss_pred HHHHHHHHHHCCCeEEEEeccCCCchhhHhhc--------CCCC---------------ChHHHHHHHHHHHHHHHHhCC
Q 018102 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGWL---------------NKEIVKYFEIYADTCFASFGD 176 (360)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--------gg~~---------------~~~~~~~F~~ya~~~~~~~~~ 176 (360)
=.++|+++++.||+|++--+-.-.|..|..-+ +.|. .|-+.+-=..|-+...+.||+
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999888777888876532 2221 233444445566778888996
Q ss_pred CccEE--EEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 018102 177 RVKNW--ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKY 234 (360)
Q Consensus 177 ~V~~w--~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~ 234 (360)
--..+ -||||. .||-.. . ..+-.+.+.+|+.++++.
T Consensus 236 ~tniy~~DpFNE~------------~Pp~se-----p-----ey~~staaAiyesm~kvd 273 (666)
T KOG2233|consen 236 VTNIYSADPFNEI------------LPPESE-----P-----EYVKSTAAAIYESMKKVD 273 (666)
T ss_pred cccccccCccccc------------CCCCCC-----h-----HHHHHHHHHHHHHHhccC
Confidence 32223 388884 355321 1 123334566788888865
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=86.08 E-value=2 Score=37.98 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=45.0
Q ss_pred ccccccHHHHHHHHHcCCCeEEeccccccccc--CCCC------CcCCh--hhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFP--DGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 74 ~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P--~~~g------~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
..+....+-++.++++|++++-++--+..... ...| ..+++ -..+-++++|++|+++||++++.+.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555677788999999999988765544421 1001 01221 1346689999999999999999874
No 47
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=85.04 E-value=6.1 Score=38.54 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCch-hhHhhcCCCCC
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL-HLHESMGGWLN 156 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~-~l~~~~gg~~~ 156 (360)
..+.|+.+||+||+|++|+=- |-|. .| .|.....|.+.||-+++.|. .|. -+... .-|.+
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~----vdp~-----~n------Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~-~P~~s 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYS----VDPS-----KN------HDECMSAFADAGIYVILDLN---TPNGSINRS-DPAPS 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT-----S--------HHHHHHHHHTT-EEEEES----BTTBS--TT-S----
T ss_pred HHHHhHHHHHHcCCCEEEEEE----eCCC-----CC------HHHHHHHHHhCCCEEEEecC---CCCccccCC-CCcCC
Confidence 578999999999999999732 2232 23 57778889999999999996 342 12111 11111
Q ss_pred hHHHHHHHHHHHHHHHHhCC--CccEEEEeccc
Q 018102 157 KEIVKYFEIYADTCFASFGD--RVKNWITINEP 187 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~~~~~--~V~~w~t~NEp 187 (360)
=....|.+|... ++.|+. .+-.+..=||-
T Consensus 115 -w~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 115 -WNTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp ---HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred -CCHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 123455555443 455554 36667777774
No 48
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=83.87 E-value=6 Score=38.94 Aligned_cols=109 Identities=19% Similarity=0.399 Sum_probs=59.1
Q ss_pred ccccHHHHHHHHHcCCCeEEecc----cccccccCC----------------------------CCCcCC----hhhHHH
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSI----SWSRIFPDG----------------------------LGTKIN----MEGITF 119 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si----~W~ri~P~~----------------------------~g~~~n----~~~l~~ 119 (360)
|.||++.|+.|+--|||..=--+ -|.|+.-+- .| .+. .+.++.
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgG-PLp~~w~~~q~~L 96 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGG-PLPQSWIDQQAEL 96 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCC-CCCHHHHHHHHHH
Confidence 56888889999888888543211 133333221 02 221 234566
Q ss_pred HHHHHHHHHHCCCeEEEEeccCCCchhhHhhc--------CCC--------CChHHHHHHHHHHHHH----HHHhCCCcc
Q 018102 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGW--------LNKEIVKYFEIYADTC----FASFGDRVK 179 (360)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--------gg~--------~~~~~~~~F~~ya~~~----~~~~~~~V~ 179 (360)
=+++++++++.||+|++--+---.|..+.+++ |.| ..| .-+.|++.++.. .+.|| .-.
T Consensus 97 q~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~ 174 (333)
T PF05089_consen 97 QKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDH 174 (333)
T ss_dssp HHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----S
T ss_pred HHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCc
Confidence 78999999999999999988777898888776 223 222 235666666554 46687 344
Q ss_pred EEE--Eeccc
Q 018102 180 NWI--TINEP 187 (360)
Q Consensus 180 ~w~--t~NEp 187 (360)
+|. +|||-
T Consensus 175 ~Y~~D~FnE~ 184 (333)
T PF05089_consen 175 IYAADPFNEG 184 (333)
T ss_dssp EEE--TTTTS
T ss_pred eeCCCccCCC
Confidence 444 78884
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=81.29 E-value=9.9 Score=37.03 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=64.9
Q ss_pred cccHHHHHHHHHcCCCeEEecccc-------cccccCC---CCCcCChhhHHHHHHHHHHHHHCCCeEEEEe-cc-----
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISW-------SRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTL-YH----- 140 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W-------~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL-~h----- 140 (360)
...++-++.++++|+|++=+.+.+ |.++|.. .|......+.+.+..+|++++++||++..-+ ..
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345677899999999987655533 3344421 1101111256779999999999999987544 11
Q ss_pred -----CCCchhhHhh-------c----CC--CC---ChHHHHHHHHHHHHHHHHhC
Q 018102 141 -----WDLPLHLHES-------M----GG--WL---NKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 141 -----~~~P~~l~~~-------~----gg--~~---~~~~~~~F~~ya~~~~~~~~ 175 (360)
-..|.|+... + ++ |. +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246664411 1 22 44 47899999999999999996
No 50
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=80.95 E-value=5.4 Score=40.88 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=65.4
Q ss_pred cHHHHHHHHHcCCCeEEecc-cccccccCCCCCcCChhhHHHHHHHHHHHHHCC-CeEEEEeccCCCchhhHhhcCCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSI-SWSRIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWLN 156 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~g-i~p~vtL~h~~~P~~l~~~~gg~~~ 156 (360)
-+|.+++|+++|+|.+-+++ |-+.-.-+.-| ... ..+-..+.|+.+++.| +.+.++|. +++|. .
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg-R~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRAG-RKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC-CCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C-
Confidence 46779999999999888887 33221111112 221 1255677899999999 66777776 56763 1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCccccccC
Q 018102 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~~ 201 (360)
+.+.|.+=.+.+.+-=-+.|..+...-+|+......+..|.++
T Consensus 228 --T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 --TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2334444444444433367888888888887544334445554
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=76.87 E-value=13 Score=31.54 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCeEEeccc------c--cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 82 DIDLIAKLGFDAYRFSIS------W--SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 82 Di~l~~~lG~~~~R~si~------W--~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
=++.++++|+|++-+... | +++.+.-.+ +. -+.+.++|++|+++||++++-+.
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~--L~---~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPG--LK---RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCC--CC---cCHHHHHHHHHHHCCCEEEEEEe
Confidence 367999999999998332 1 333222112 22 37899999999999999998765
No 52
>PLN02361 alpha-amylase
Probab=76.53 E-value=5.7 Score=40.18 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=46.2
Q ss_pred ccccccHHHHHHHHHcCCCeEEecccccccccCCCC----CcCChh--hHHHHHHHHHHHHHCCCeEEEEe
Q 018102 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 74 ~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
.+|....+-++.+++||++++=++=...-.-+.|.. -.+|.. ..+-++++|++|+++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 488889999999999999999876654433333211 011111 23568999999999999999964
No 53
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=76.09 E-value=5.3 Score=37.31 Aligned_cols=58 Identities=21% Similarity=0.438 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC-CC------CcCCh--hhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g------~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.+-++.+|+|||+++-++=-+. .|.. .| ..+|. -..+=++++|++|.++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4557899999999999875444 1111 11 11222 1456789999999999999999875
No 54
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=75.99 E-value=6.4 Score=39.04 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=57.5
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC---CCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGW 154 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~ 154 (360)
-++.+++|+++|++.+-+++ .-+-++- -|...+ .+-..+.|+.+++.|+..+ +.|. +++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~g~~~v~~dli-~GlPg--------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIHT---FEEFLENYKLARKLGFNNINVDLM-FGLPN--------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------
Confidence 46779999999999555555 3333221 120122 4567889999999999743 5554 56663
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEeccccccc
Q 018102 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (360)
Q Consensus 155 ~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~ 191 (360)
++.+.|.+-.+.+.+.=-+.|..+...-+|+...
T Consensus 163 ---qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 163 ---QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 1345555666665543225666666556777543
No 55
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=75.56 E-value=16 Score=35.08 Aligned_cols=117 Identities=18% Similarity=0.247 Sum_probs=71.5
Q ss_pred CceeeeecccCCccccCCCCCccCccccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCCh---hhHHHHHHHHHH
Q 018102 50 ASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINM---EGITFYNNIIDA 126 (360)
Q Consensus 50 ~s~wd~~~~~~~~~~~~~~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~---~~l~~y~~~i~~ 126 (360)
.+.|+-|....+. ..+-.+.-.+..+++-|+..+++|+..+=+.--|+.-.+.. ..|. ..-....++++-
T Consensus 9 k~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~---~~d~~~~~~~~dl~elv~Y 81 (273)
T PF10566_consen 9 KAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDD---DFDFTKPIPDFDLPELVDY 81 (273)
T ss_dssp EEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TT---T--TT-B-TT--HHHHHHH
T ss_pred eEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccc---cccccccCCccCHHHHHHH
Confidence 4677766542221 12223556788899999999999999999999998733221 1110 111456899999
Q ss_pred HHHCCCeEEEEeccCC------CchhhHhh---c---C------CC---CChHHHHHHHHHHHHHHHH
Q 018102 127 LLQKGIQPYVTLYHWD------LPLHLHES---M---G------GW---LNKEIVKYFEIYADTCFAS 173 (360)
Q Consensus 127 l~~~gi~p~vtL~h~~------~P~~l~~~---~---g------g~---~~~~~~~~F~~ya~~~~~~ 173 (360)
.++.|+.++|-.+|-+ +=.-+.+. | | +| .+...+..+.+.++.++++
T Consensus 82 a~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 82 AKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999998754 11111111 1 1 22 3466788888888887765
No 56
>PLN00196 alpha-amylase; Provisional
Probab=75.38 E-value=5.2 Score=40.83 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=44.8
Q ss_pred cccccHHHHHHHHHcCCCeEEecccccccccCCCC----CcCCh---hhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINM---EGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~---~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
+|....+-+..+++||++++=++=......+.+.. -.+|. =..+=++++|++|.++||++|+.+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57778889999999999999887654433222211 01221 022458999999999999999974
No 57
>PRK12313 glycogen branching enzyme; Provisional
Probab=74.81 E-value=14 Score=39.60 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=59.4
Q ss_pred ccccHHH-HHHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 76 YHRYKED-IDLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 76 ~~~~~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
|.-..+. ++.+++||++++=+.=- | -.|.|.- | ..+=++++|++|.++||++|+.+.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-G------t~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-G------TPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3444556 48999999999875432 2 1122221 3 234589999999999999999854
Q ss_pred --cCCCch----hhH--------h---h-cCCC-------CChHHHHHHHHHHHHHHHHhC
Q 018102 140 --HWDLPL----HLH--------E---S-MGGW-------LNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 140 --h~~~P~----~l~--------~---~-~gg~-------~~~~~~~~F~~ya~~~~~~~~ 175 (360)
|..... ++. + . +.+| .++++.+.+.+-++.-+++|+
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 543111 110 0 0 0123 368888999998888888877
No 58
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=74.01 E-value=14 Score=35.05 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=46.2
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
-.+|++++.+.|++.+|+.++=|...-.. .+ .=-.+.++...+++..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHG-KSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47799999999999999988655433221 12 11245789999999999999999999885
No 59
>PRK05402 glycogen branching enzyme; Provisional
Probab=73.93 E-value=18 Score=39.54 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=58.1
Q ss_pred ccHHHH-HHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec--
Q 018102 78 RYKEDI-DLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-- 139 (360)
Q Consensus 78 ~~~eDi-~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-- 139 (360)
-..+.+ +.+++||++++=+.=- | -.|.|.- | ..+=++++|++|.++||++|+.+.
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-G------t~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-G------TPDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-C------CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 334453 7889999999865432 2 1122221 3 235589999999999999999854
Q ss_pred cCCCc-----------hhhHh-----hcCC-------CCChHHHHHHHHHHHHHHHHhC
Q 018102 140 HWDLP-----------LHLHE-----SMGG-------WLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 140 h~~~P-----------~~l~~-----~~gg-------~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
|+... .+... .+.. +.++++.+.+.+-++.-+++|+
T Consensus 339 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 339 HFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 54211 11010 0112 3468888999998888888876
No 60
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=73.60 E-value=18 Score=35.16 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCC-eEEeccc-cc-cccc-C-CCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCC
Q 018102 80 KEDIDLIAKLGFD-AYRFSIS-WS-RIFP-D-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (360)
Q Consensus 80 ~eDi~l~~~lG~~-~~R~si~-W~-ri~P-~-~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~ 154 (360)
++.+++|+++|++ .+=++++ -+ ++.- . +.| .+ ++-+.+.++.++++||.+.+.+. +++|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg--~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG--ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC--CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 6789999999998 4666662 21 2221 1 112 23 35688999999999999777765 34552 1
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCccccccCC
Q 018102 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAP 202 (360)
Q Consensus 155 ~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~~p 202 (360)
...++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223677778778887765 45778877766666654333455666655
No 61
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=72.54 E-value=13 Score=35.74 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCC
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~ 156 (360)
+-..+++++++.|++.+++.++=|...-.. -+ .--.+.++...++|+.+++.|+++.+++-+|+.|.
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~----------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM----------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------
Confidence 446799999999999999998655444332 12 22356889999999999999999999998877653
Q ss_pred hHHHHHHHHHHHHHHH
Q 018102 157 KEIVKYFEIYADTCFA 172 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~ 172 (360)
+..++.+.++++.+.+
T Consensus 143 r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 143 RDSPDYVFQLVDFLSD 158 (280)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 1124566666666544
No 62
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=72.22 E-value=1e+02 Score=30.13 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=31.8
Q ss_pred ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccC
Q 018102 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (360)
Q Consensus 102 ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 141 (360)
+..|...+ -++.+.+..++++.+.++++|-..++=|+|-
T Consensus 62 ~~~~~~~~-~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLG-LWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCcee-ecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 34444335 5678889999999999999999999999994
No 63
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=70.18 E-value=7.6 Score=30.27 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=13.9
Q ss_pred HHHHhCC--CccEEEEecc-cc
Q 018102 170 CFASFGD--RVKNWITINE-PL 188 (360)
Q Consensus 170 ~~~~~~~--~V~~w~t~NE-p~ 188 (360)
++++||+ +|-+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677775 6999999999 76
No 64
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=69.86 E-value=26 Score=35.93 Aligned_cols=95 Identities=22% Similarity=0.351 Sum_probs=58.6
Q ss_pred cHHH-HHHHHHcCCCeEEec-------ccccc-cccCCC--C--------CcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKED-IDLIAKLGFDAYRFS-------ISWSR-IFPDGL--G--------TKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~P~~~--g--------~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
++.| +.++|+|.+..+|+. ..|.. |-|... - .+-|.-| ..++++.|+..|.+|++++.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 5667 569999999999852 13432 111110 0 0111112 47899999999999999996
Q ss_pred cCCCchhhHhhcCCCCChHHHHHHHHHHHH--------HHHHhCC----CccEEEEecccc
Q 018102 140 HWDLPLHLHESMGGWLNKEIVKYFEIYADT--------CFASFGD----RVKNWITINEPL 188 (360)
Q Consensus 140 h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~--------~~~~~~~----~V~~w~t~NEp~ 188 (360)
= |. ...+....|.+||.. .-...|. .|++|.+=||-.
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 1 21 234556667777652 3333443 499999999974
No 65
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=69.60 E-value=23 Score=37.25 Aligned_cols=92 Identities=18% Similarity=0.298 Sum_probs=57.4
Q ss_pred ccccHHHHHHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY- 139 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~- 139 (360)
+.-..+-++.+++||++++-+.=- | -.+.|.- | ..+=++++|++|.++||++|+.+.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G------~~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G------GPDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C------CHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 444456689999999999875421 2 1111111 2 245689999999999999999854
Q ss_pred -cCC---------CchhhHhh-cCCC------CCh---HHHHHHHHHHHHHHHHhC
Q 018102 140 -HWD---------LPLHLHES-MGGW------LNK---EIVKYFEIYADTCFASFG 175 (360)
Q Consensus 140 -h~~---------~P~~l~~~-~gg~------~~~---~~~~~F~~ya~~~~~~~~ 175 (360)
|.. .| |+... ..+| .++ ++.+.+.+-++.-++.|+
T Consensus 183 NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 183 NHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 532 12 22211 1233 235 777777777777777665
No 66
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=68.15 E-value=8.6 Score=40.40 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=41.8
Q ss_pred ccccccHHHHHHHHHcCCCeEEecccccccccCCCC------CcCChh--hHHHHHHHHHHHHHCCCeEEEEec
Q 018102 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 74 ~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g------~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
..+.-..+-++.+++||++++=++=-...-.-. .| ..+|.. ..+-++++|++|+++||++|+.+.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445556677899999999998665432211000 01 011111 346689999999999999999854
No 67
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=67.82 E-value=27 Score=33.74 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=54.6
Q ss_pred HHHHHcCCCeEEeccc--ccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHH
Q 018102 84 DLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (360)
Q Consensus 84 ~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~ 161 (360)
+.+++.|++++-+++- -....|.-.| .............|..|++.|++++|.+-.+.-... -.++..++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g-~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGG-SYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCC-CCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHH
Confidence 5778899998887753 2222222111 111011245577899999999999999854332110 01456788
Q ss_pred HHHHHHHHHHHHhCC-CccE
Q 018102 162 YFEIYADTCFASFGD-RVKN 180 (360)
Q Consensus 162 ~F~~ya~~~~~~~~~-~V~~ 180 (360)
.|++....+.++|+= .|++
T Consensus 91 ~~~~a~~~~i~~y~~dgiDf 110 (294)
T cd06543 91 QLAAAYQKVIDAYGLTHLDF 110 (294)
T ss_pred HHHHHHHHHHHHhCCCeEEE
Confidence 888888888999973 3443
No 68
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.85 E-value=24 Score=33.21 Aligned_cols=59 Identities=25% Similarity=0.246 Sum_probs=46.1
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
-.+|++...+.|++.+|+.++.+.+.-.. -+ .=..+.++...++++.+++.|+++.+++
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999887664332 12 1224678889999999999999887655
No 69
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=65.85 E-value=9.7 Score=39.27 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=43.1
Q ss_pred ccccccHHHHHHHHHcCCCeEEeccccccccc---CCCC----C---------cCChh--hHHHHHHHHHHHHHCCCeEE
Q 018102 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFP---DGLG----T---------KINME--GITFYNNIIDALLQKGIQPY 135 (360)
Q Consensus 74 ~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P---~~~g----~---------~~n~~--~l~~y~~~i~~l~~~gi~p~ 135 (360)
+.|.-..+-++.+++||++++=++=...-... .+.. - .+|.. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 45555677789999999999877654332110 0100 0 12211 24558999999999999999
Q ss_pred EEec
Q 018102 136 VTLY 139 (360)
Q Consensus 136 vtL~ 139 (360)
+.+.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9753
No 70
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=65.54 E-value=27 Score=34.74 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC---CCCcCChhhHHHHHHHHHHHHHCCCe-EEEEeccCCCchhhHhhcCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGW 154 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~ 154 (360)
-++.++.|+++|++.+-+++. -+-++- -|...+ .+-..+.|+.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGvQ--S~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGVQ--TFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEccc--cCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 367799999999996666652 122211 120122 34567789999999997 456665 56662
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccEEEEecccccc
Q 018102 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (360)
Q Consensus 155 ~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~ 190 (360)
++.+.|.+-.+.+.+.=-+.|..+...-||+..
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 235566666666665333678888888888854
No 71
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=65.47 E-value=24 Score=36.52 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=42.7
Q ss_pred ccccccHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 74 DHYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 74 ~~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
=-|..|.+| +++.++.|++.+|..-. +|+ ++-....|+.+++.|....+++.+=+.|
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~------------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDA------------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEccc------------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 357788889 89999999999997643 332 3456777888888888887777765556
No 72
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=65.45 E-value=29 Score=34.92 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=63.8
Q ss_pred cHHHHHHHHHcCCCeEEecc-cc-cccccCCCCCcCChhhHHHHHHHHHHHHHCCCe-EEEEeccCCCchhhHhhcCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~ 155 (360)
-++.+++|+++|+|.+-+++ +- .++...- |...+ .+-..+.++.+++.|+. +-++|. +++|. .
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 46789999999999776666 22 1222111 21222 24567889999999998 557776 56763 1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCccccccC
Q 018102 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~~ 201 (360)
+.+.+.+=++.+.+-=-+.|..+...-||+......+..|.+.
T Consensus 180 ---t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~ 222 (400)
T PRK07379 180 ---TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAP 222 (400)
T ss_pred ---CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCC
Confidence 2334444444443322366888887888886554445555443
No 73
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=65.22 E-value=36 Score=33.40 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=49.1
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
.+.+|++|-+++.|=+-|. |+.+. .+|....++.+++.++|++.+|--++=+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~-~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPD-EINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5789999999999999886 55434 6899999999999999999999999887765543
No 74
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.00 E-value=22 Score=32.94 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 140 (360)
+++++++++.|++.+|++++-+.+.-.. .+ .=....++...+.++.+++.|+++.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLN-KSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 8999999999999999999876422111 01 111235677889999999999999999954
No 75
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=64.94 E-value=37 Score=33.40 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHH
Q 018102 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (360)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~ 161 (360)
+.+.+|++|-+++.|=+-|. |+.+- .+|....++.+++.++|++.+|--++=+..++.+. .+. .+++...
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d~----~~~eyak 181 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDE-EINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SDN----NSAAYAK 181 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--ccc----ccHHHHh
Confidence 46889999999999999886 55433 78988999999999999999999999887665432 111 2233332
Q ss_pred HHHHHHHHHHHHhCC---CccEEE
Q 018102 162 YFEIYADTCFASFGD---RVKNWI 182 (360)
Q Consensus 162 ~F~~ya~~~~~~~~~---~V~~w~ 182 (360)
..-+.+-..++.|++ .|+.|=
T Consensus 182 ~kP~~V~~amkefs~~~~gvDVlK 205 (329)
T PRK04161 182 LKPHKVNGAMKVFSDKRFGVDVLK 205 (329)
T ss_pred hChHHHHHHHHHhccCCCCCcEEE
Confidence 223334455666765 355443
No 76
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=64.71 E-value=11 Score=39.69 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=43.0
Q ss_pred CccccccHHHHHHHHHcCCCeEEecccccccccCCC-C------CcCCh--hhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-G------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 73 ~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g------~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
..-+.-..+.++.+++||++++=++=-+.. |..+ | ..+|. -..+-++++|++|.++||++|+.+.
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344555668899999999999876543311 1110 1 01111 1345689999999999999999764
No 77
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=64.58 E-value=40 Score=36.01 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=58.5
Q ss_pred cHHHH-HHHHHcCCCeEEe-ccccccccc-CCCC----CcCCh--hhHHHHHHHHHHHHHCCCeEEEEec--cCCC----
Q 018102 79 YKEDI-DLIAKLGFDAYRF-SISWSRIFP-DGLG----TKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWDL---- 143 (360)
Q Consensus 79 ~~eDi-~l~~~lG~~~~R~-si~W~ri~P-~~~g----~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~--h~~~---- 143 (360)
..+.+ +.+++||++++=+ .|....-.- .|.. ..++. -..+=++++|++|.++||++|+.+. |...
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 34554 8899999999987 333221000 0000 00110 1234589999999999999999855 5321
Q ss_pred -------chhhHh-----hcCCC-------CChHHHHHHHHHHHHHHHHhC
Q 018102 144 -------PLHLHE-----SMGGW-------LNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 144 -------P~~l~~-----~~gg~-------~~~~~~~~F~~ya~~~~~~~~ 175 (360)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 00112 468899999999999999887
No 78
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.29 E-value=46 Score=32.10 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCC--CeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC---chhhH------
Q 018102 80 KEDIDLIAKLGF--DAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLH------ 148 (360)
Q Consensus 80 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l~------ 148 (360)
.+-++.+++.|+ +++=+.+.|..-. ++= .+|.+.+---..+|++|+++|+++++.+.=+-. +..-+
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f-~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--GDF-DFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--Ccc-ccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 445678888885 4777777785432 212 455555555789999999999999987653211 11111
Q ss_pred ---hhcC----------C------CCChHHHHHHHHHHHHHHHHhCCCccEEEEecccc
Q 018102 149 ---ESMG----------G------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (360)
Q Consensus 149 ---~~~g----------g------~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~ 188 (360)
+..| | +.||++.+.|.+..+.+...+|= --+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 67899999999988888877643 24588899997
No 79
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=63.43 E-value=27 Score=34.69 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc-CCCchhhHhhcCCCC
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~ 155 (360)
.-.+|++++.+.|++.+++.++=|...-.. -+ .=-.+.++.+.++|+.++++|+++.+++.. |+.|. .+-.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~ 194 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV 194 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC
Confidence 368999999999999999998766554432 12 223568899999999999999999877753 45442 2322
Q ss_pred ChHHHHHHHHHHHHHHH
Q 018102 156 NKEIVKYFEIYADTCFA 172 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~ 172 (360)
+ ++.+.++++.+.+
T Consensus 195 ~---~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 P---PSKVAYVAKELYD 208 (347)
T ss_pred C---HHHHHHHHHHHHH
Confidence 2 4455555555543
No 80
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.27 E-value=1.5e+02 Score=28.88 Aligned_cols=153 Identities=13% Similarity=0.081 Sum_probs=82.1
Q ss_pred ccccc---CCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC---chhh---------Hhh--c-CCCC-------
Q 018102 101 SRIFP---DGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL---------HES--M-GGWL------- 155 (360)
Q Consensus 101 ~ri~P---~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l---------~~~--~-gg~~------- 155 (360)
.+..| ...+ -++.+-+..++++.+.++++|-..++=|+|-+- +.+. ... . ..+.
T Consensus 63 ~~~~~~~~~~~~-~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~ 141 (338)
T cd04733 63 HLEEPGIIGNVV-LESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTE 141 (338)
T ss_pred cccCCCcCCCcc-cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCH
Confidence 45555 3235 678889999999999999999999999999322 1000 000 0 0011
Q ss_pred --ChHHHHHHHHHHHHHHHHhC-CCccEEEEecccccccccCccccccC-CCC-CCCCCchHHHHHHHHHHHHHHHHHHH
Q 018102 156 --NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFA-PGR-HQHSSTEPYLVAHHQILAHAAAFSVY 230 (360)
Q Consensus 156 --~~~~~~~F~~ya~~~~~~~~-~~V~~w~t~NEp~~~~~~gy~~g~~~-p~~-~~~~~~~~~~~~hn~l~Aha~Av~~~ 230 (360)
-.++++.|++=|+.+ ++.| |-|. +.+-.||+...|. |.. +..+.-.. .+-|-+.--...++.+
T Consensus 142 ~eI~~~i~~~~~aA~ra-~~aGfDgVe---------ih~a~gyLl~qFlsp~~N~R~D~yGG--slenR~rf~~EiI~aI 209 (338)
T cd04733 142 EEIEDVIDRFAHAARLA-QEAGFDGVQ---------IHAAHGYLLSQFLSPLTNKRTDEYGG--SLENRARLLLEIYDAI 209 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCEEE---------EchhhhhHHHHhcCCcCCCCCccCCC--CHHHHHHHHHHHHHHH
Confidence 133677777766654 3444 3232 2345677766553 321 00010001 1234444445566677
Q ss_pred HHhhcCCCCceEEEeecCcccccCCCCHHHH-HHHHHHH
Q 018102 231 QRKYKDKQGGNIGLVVDCEWAEANSDKIEDK-SAAARRL 268 (360)
Q Consensus 231 k~~~~~~~~~kVG~~~~~~~~~P~~~~p~D~-~aa~~~~ 268 (360)
|+.. .++..|++-++...+.+..-++++. ..++...
T Consensus 210 R~av--G~d~~v~vris~~~~~~~g~~~eea~~ia~~Le 246 (338)
T cd04733 210 RAAV--GPGFPVGIKLNSADFQRGGFTEEDALEVVEALE 246 (338)
T ss_pred HHHc--CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHH
Confidence 7653 2355788888765444443345543 3444433
No 81
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=62.89 E-value=27 Score=32.36 Aligned_cols=51 Identities=20% Similarity=0.539 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHcCCCeEEe----------------------cccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeE
Q 018102 77 HRYKEDIDLIAKLGFDAYRF----------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP 134 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p 134 (360)
-.-+.-++|+++||.+++.| ++ | +||.| | +|. +.+..++..|++.|++-
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG-G--Idl---~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG-G--IDL---DNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC-C--ccH---HhHHHHHHHHHHcCCCe
Confidence 44566789999999998875 33 4 68876 5 774 77899999999999987
Q ss_pred EE
Q 018102 135 YV 136 (360)
Q Consensus 135 ~v 136 (360)
++
T Consensus 206 vi 207 (236)
T TIGR03581 206 VI 207 (236)
T ss_pred ec
Confidence 63
No 82
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=62.49 E-value=31 Score=34.11 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=43.6
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
++.++++|.+++-+-+-|. |+.+. .+|...+++..++.++|++.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~-~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDD-AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcch-HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999999886 54312 4688889999999999999999988864
No 83
>PRK14705 glycogen branching enzyme; Provisional
Probab=62.16 E-value=42 Score=38.84 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=55.5
Q ss_pred HHHHHHcCCCeEEecc--------cccccccCCCCCcCC--hhhHHHHHHHHHHHHHCCCeEEEEec--cCCCchhhHhh
Q 018102 83 IDLIAKLGFDAYRFSI--------SWSRIFPDGLGTKIN--MEGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHLHES 150 (360)
Q Consensus 83 i~l~~~lG~~~~R~si--------~W~ri~P~~~g~~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~~P~~l~~~ 150 (360)
++.+|+||++++=+.= +|- -.|...- .++ .-..+=++.+|++|.++||.+|+.+. |+..=.|....
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~-ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~ 849 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYF-APTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQ 849 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccC-CcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhh
Confidence 6889999999986432 231 1111100 011 01234589999999999999999854 54211121100
Q ss_pred c----------------CC-------CCChHHHHHHHHHHHHHHHHhC
Q 018102 151 M----------------GG-------WLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 151 ~----------------gg-------~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
+ .. +.++++.+.+.+=+..-+++|+
T Consensus 850 fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 850 FDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 0 11 3457888888888998888887
No 84
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=62.12 E-value=19 Score=39.11 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=39.5
Q ss_pred HHHHHHcCCCeEEe----cccccccccCCCC--------------------CcCC-hhhHHHHHHHHHHHHHCCCeEEEE
Q 018102 83 IDLIAKLGFDAYRF----SISWSRIFPDGLG--------------------TKIN-MEGITFYNNIIDALLQKGIQPYVT 137 (360)
Q Consensus 83 i~l~~~lG~~~~R~----si~W~ri~P~~~g--------------------~~~n-~~~l~~y~~~i~~l~~~gi~p~vt 137 (360)
|+-+|+||++++.+ ++.+.+...+. | +..+ ...+.=+++||++|.++||++|+.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~-gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKS-GLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEecccccccc-ccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999983 44444443321 1 1111 124778999999999999999997
Q ss_pred ec
Q 018102 138 LY 139 (360)
Q Consensus 138 L~ 139 (360)
+-
T Consensus 285 VV 286 (697)
T COG1523 285 VV 286 (697)
T ss_pred Ee
Confidence 54
No 85
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=62.12 E-value=35 Score=32.79 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc-CCCchhhHhhcCCCC
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~ 155 (360)
+-.+|+++..+.|++.+|+.++=|...-.. -+ .=-.+.++...++|+.++++|+++..++.. |+.|. .|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~-~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNIN-CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC
Confidence 468999999999999999998655443221 13 223457888999999999999999877763 45452 3333
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 018102 156 NKEIVKYFEIYADTCFAS 173 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~ 173 (360)
+ .+.+.++++.+.+.
T Consensus 153 ~---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 P---PEAVADVAERLFAL 167 (287)
T ss_pred C---HHHHHHHHHHHHHc
Confidence 3 56667777776543
No 86
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=61.73 E-value=30 Score=35.80 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=40.5
Q ss_pred cccccHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 75 ~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
.|..|.+| ++...+.|++.+|+..+-+.+ +-....|+.+++.|+.+..++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46678888 899999999999998865432 334666777788888777766543334
No 87
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=61.73 E-value=47 Score=32.93 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=61.0
Q ss_pred cHHHHHHHHHcCCCeEEecc-ccc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCe-EEEEeccCCCchhhHhhcCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~ 155 (360)
-++.+++|+++|++.+-+++ +-+ ++...- |... ..+...+.++.+++.|+. +.++|. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~---s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTH---TPGRAVAAAREARAAGFEHVNLDLI-YGTPG---------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC----------
Confidence 46789999999999777766 222 222111 2022 235677899999999998 666665 45552
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CCccEEEEecccccccccCcccccc
Q 018102 156 NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF 200 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~-~~V~~w~t~NEp~~~~~~gy~~g~~ 200 (360)
++.+.|.+=.+.+.+ ++ +.|..+...-+|+.....-+..|.+
T Consensus 172 --qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~ 214 (375)
T PRK05628 172 --ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTALARRVRRGEL 214 (375)
T ss_pred --CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHHHHhhcCCC
Confidence 134445554454443 44 5566666556776654333333444
No 88
>PLN02784 alpha-amylase
Probab=61.66 E-value=18 Score=40.06 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=46.4
Q ss_pred ccccccHHHHHHHHHcCCCeEEecccccccccCCCC----CcCChh--hHHHHHHHHHHHHHCCCeEEEEe
Q 018102 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 74 ~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g----~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
.+|....+.++.+++||++++=++=.-.-..+.|.. -.+|.. ..+=++.+|++|+++||++++.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 578888999999999999999776654433333311 011211 23568999999999999999974
No 89
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=61.39 E-value=39 Score=33.41 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHH
Q 018102 81 EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIV 160 (360)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~ 160 (360)
.-|++|.+.|++.+=.|+- .|++ -+...++.+.++++.+.+.|++++|++. |.-|.+ -||. ...+
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~----~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l 84 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLL----IPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHHcCccceeeecc----cCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHH
Confidence 3478999999998777763 3432 3345789999999999999999999995 887765 4553 3345
Q ss_pred HHHHHH
Q 018102 161 KYFEIY 166 (360)
Q Consensus 161 ~~F~~y 166 (360)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555555
No 90
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=61.29 E-value=19 Score=33.87 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEeccC--------------CCchh--hH--------------hhcCC---C-CChH-----
Q 018102 118 TFYNNIIDALLQKGIQPYVTLYHW--------------DLPLH--LH--------------ESMGG---W-LNKE----- 158 (360)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~h~--------------~~P~~--l~--------------~~~gg---~-~~~~----- 158 (360)
+.++.+|+.-++.|..+|+||.=- ..|.| -. .+.++ . .+|.
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 789999999999999999998621 11211 11 00011 1 1333
Q ss_pred -HHHHHHHHHHHHHHHhCCC-----ccEEEEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 018102 159 -IVKYFEIYADTCFASFGDR-----VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQR 232 (360)
Q Consensus 159 -~~~~F~~ya~~~~~~~~~~-----V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~ 232 (360)
..+. ++..+..+||.. |++|..=|||.+-.. .++-- +.....+.-+....++.|+|+|..
T Consensus 104 ~y~~e---wV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~------TH~dV---HP~~~t~~El~~r~i~~AkaiK~~-- 169 (239)
T PF12891_consen 104 VYMDE---WVNYLVNKYGNASTNGGVKYYSLDNEPDLWHS------THRDV---HPEPVTYDELRDRSIEYAKAIKAA-- 169 (239)
T ss_dssp EEHHH---HHHHHHHHH--TTSTTS--EEEESS-GGGHHH------HTTTT-----S---HHHHHHHHHHHHHHHHHH--
T ss_pred hHHHH---HHHHHHHHHhccccCCCceEEEecCchHhhcc------ccccc---CCCCCCHHHHHHHHHHHHHHHHhh--
Confidence 3444 567777777765 999999999997531 22111 111223556667777778775544
Q ss_pred hhcCCCCce-EEEee
Q 018102 233 KYKDKQGGN-IGLVV 246 (360)
Q Consensus 233 ~~~~~~~~k-VG~~~ 246 (360)
. |.++ +|.+.
T Consensus 170 -D---P~a~v~GP~~ 180 (239)
T PF12891_consen 170 -D---PDAKVFGPVE 180 (239)
T ss_dssp -----TTSEEEEEEE
T ss_pred -C---CCCeEeechh
Confidence 3 3665 45553
No 91
>PRK09505 malS alpha-amylase; Reviewed
Probab=60.54 E-value=15 Score=39.78 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCeEEecccccccc-----------cC-C-CC------CcCChh--hHHHHHHHHHHHHHCCCeEEEE
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIF-----------PD-G-LG------TKINME--GITFYNNIIDALLQKGIQPYVT 137 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------P~-~-~g------~~~n~~--~l~~y~~~i~~l~~~gi~p~vt 137 (360)
..+-++.+++||++++=++=-...+. |. . .| ..+|.. ..+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45568899999999998775443321 10 0 01 012221 3566899999999999999997
Q ss_pred ec
Q 018102 138 LY 139 (360)
Q Consensus 138 L~ 139 (360)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 92
>PRK12568 glycogen branching enzyme; Provisional
Probab=59.64 E-value=42 Score=36.71 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=58.2
Q ss_pred ccccHHH-HHHHHHcCCCeEEecc--------ccc-------ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 76 YHRYKED-IDLIAKLGFDAYRFSI--------SWS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 76 ~~~~~eD-i~l~~~lG~~~~R~si--------~W~-------ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
|.-..+. |+.+|+||++++=+.= +|- .+.|.- | ..+-++.+|++|.++||.+|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G------~~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-G------SPDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3334444 6889999999985432 341 111111 3 235589999999999999999864
Q ss_pred --cCCCc-----------hhhH-h-h---cCC-------CCChHHHHHHHHHHHHHHHHhC
Q 018102 140 --HWDLP-----------LHLH-E-S---MGG-------WLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 140 --h~~~P-----------~~l~-~-~---~gg-------~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
|+..- .+-. + . +.. +.++++.+.+.+=++.-+++|+
T Consensus 341 ~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 341 SAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43211 0100 0 0 112 3467888888888888888886
No 93
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=59.43 E-value=63 Score=33.97 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=67.5
Q ss_pred cHHHHHHHHHcCCCeEEeccc--ccccccC-CCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPD-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~-~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 155 (360)
-++.+++|+++|++.+=+++. -.++... +.| . .++-..+.++.+++.|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--h---t~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRG--H---TVRDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--C---CHHHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 367899999999997777773 2233221 112 2 235567888999999998777775 56662
Q ss_pred ChHHHHHHHHHHHHHHH--HhC-CCccEEEEecccccccccCccccccCCC
Q 018102 156 NKEIVKYFEIYADTCFA--SFG-DRVKNWITINEPLQTAVNGYCTGIFAPG 203 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~--~~~-~~V~~w~t~NEp~~~~~~gy~~g~~~p~ 203 (360)
++.+.+.+=++.+++ .++ |.|+.+-+.=.|+.....-|..|.|.|.
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 123455555555664 344 5677777666666554444666777664
No 94
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=58.65 E-value=14 Score=38.65 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=39.5
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccc-cCCCC----CcCChh--hHHHHHHHHHHHHHCCCeEEEEec
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIF-PDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~-P~~~g----~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
+.-..+-++-+++||++++=++=-.+.-. ..+.. ..+|.+ ..+=++++|++|.++||++|+.+.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34455668999999999986553211100 00000 012221 245689999999999999999753
No 95
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=58.56 E-value=36 Score=36.30 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=54.5
Q ss_pred cccccHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc----h
Q 018102 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----L 145 (360)
Q Consensus 75 ~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P----~ 145 (360)
-|.+|.+| +++.++.|++.+|++.+.+.+ +.....|+.+++.|....+++.+=+.| .
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~ 155 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQ 155 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHH
Confidence 46666666 899999999999999654332 234555666666666554444322223 1
Q ss_pred hhHhh----------------cCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecccccc
Q 018102 146 HLHES----------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (360)
Q Consensus 146 ~l~~~----------------~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~ 190 (360)
.+.+. -.|-..|. ...+.++.+-+++ +..-...+-|-..+.
T Consensus 156 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~---~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 156 TWVDLAKQLEDMGVDSLCIKDMAGLLKPY---AAYELVSRIKKRV-DVPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhc-CCeEEEEECCCCchH
Confidence 11110 13444543 4445566666666 332345677766543
No 96
>PRK09936 hypothetical protein; Provisional
Probab=58.35 E-value=1.1e+02 Score=29.79 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=45.4
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHh
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE 149 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 149 (360)
|++=++.++.+|+++ +=+.|++.--+.-| .-+ .+..+.++.+.+.||+++|.|+ +| |.|...
T Consensus 40 Wq~~~~~~~~~G~~t--LivQWt~yG~~~fg-~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDT--LVVQWTRYGDADFG-GQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcE--EEEEeeeccCCCcc-cch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 445578999999999 56789998211112 112 5789999999999999999998 56 655543
No 97
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=58.34 E-value=56 Score=31.11 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=37.9
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
-++|+++..+.|++.+|+++..+. ++.....++.+++.|+++.+++.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 478899999999999999775432 35578889999999999887663
No 98
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=57.93 E-value=69 Score=30.78 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=66.6
Q ss_pred cHHHHHHHHHcC--CCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccC---CCchhhHhh---
Q 018102 79 YKEDIDLIAKLG--FDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES--- 150 (360)
Q Consensus 79 ~~eDi~l~~~lG--~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~~~--- 150 (360)
..+-++.+++.| ++++=+.+.|.+-.-.++= .+|.+.+--...+|++|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f-~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDF-EFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceee-EECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 456678889999 5567777788753321112 4555555556899999999999998877532 223211100
Q ss_pred ----------c--------CC---CCChHHHHHHHHHHHHHHHHhCCCccE-EEEecccc
Q 018102 151 ----------M--------GG---WLNKEIVKYFEIYADTCFASFGDRVKN-WITINEPL 188 (360)
Q Consensus 151 ----------~--------gg---~~~~~~~~~F~~ya~~~~~~~~~~V~~-w~t~NEp~ 188 (360)
+ ++ +.||++.+.|.+..+.+.+ +| |++ |.=+||+.
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5788889888877776554 33 444 56688873
No 99
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.16 E-value=1e+02 Score=29.71 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=80.6
Q ss_pred cccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC---chhh----------HhhcCCC----C----ChHHHH
Q 018102 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHL----------HESMGGW----L----NKEIVK 161 (360)
Q Consensus 103 i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l----------~~~~gg~----~----~~~~~~ 161 (360)
..|...| -++.+.+..++++++.++++|-..++=|.|-+. |... ......- . -.++++
T Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~ 141 (327)
T cd02803 63 GYPGQLG-IYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIE 141 (327)
T ss_pred CCCCCcC-cCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 3444336 678889999999999999999999999998431 1000 0000000 0 145788
Q ss_pred HHHHHHHHHHHHhCCCccEEEEecccccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018102 162 YFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQ 238 (360)
Q Consensus 162 ~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~-~p~~--~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~ 238 (360)
.|++.|+.+.+.=-|-|. +.+..||+...| .|.. ..+..-.. +-|-+.--...++.+|+.. .+
T Consensus 142 ~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~yGgs---~enr~r~~~eii~avr~~~--g~ 207 (327)
T cd02803 142 DFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDEYGGS---LENRARFLLEIVAAVREAV--GP 207 (327)
T ss_pred HHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCcccCCC---HHHHHHHHHHHHHHHHHHc--CC
Confidence 888888877653213333 233456664433 2321 10000001 1133333345666666653 23
Q ss_pred CceEEEeecCcccccCCCCHHHH-HHHHHHH
Q 018102 239 GGNIGLVVDCEWAEANSDKIEDK-SAAARRL 268 (360)
Q Consensus 239 ~~kVG~~~~~~~~~P~~~~p~D~-~aa~~~~ 268 (360)
+..||+-++.....+...++++. ..++...
T Consensus 208 d~~i~vris~~~~~~~g~~~~e~~~la~~l~ 238 (327)
T cd02803 208 DFPVGVRLSADDFVPGGLTLEEAIEIAKALE 238 (327)
T ss_pred CceEEEEechhccCCCCCCHHHHHHHHHHHH
Confidence 56788888765554433345553 3344433
No 100
>PRK10785 maltodextrin glucosidase; Provisional
Probab=56.28 E-value=21 Score=38.06 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcCCCeEEeccc-------------ccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS-------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-------------W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
..+-++.+++|||+++=++=- +-+|-|.- | ..+=++++|++|.++||++|+.+.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G------t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G------GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345578999999999876532 22222221 2 235689999999999999999764
No 101
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=55.86 E-value=43 Score=33.26 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=46.2
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
-.+|++.+.+.|++.+|+.++-|.+.-.. -+ .=..+.++...+.|+.+++.|+++.+++-
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLR-KDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 48999999999999999999877654332 12 11245788899999999999999876654
No 102
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=55.46 E-value=60 Score=32.18 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=60.1
Q ss_pred cHHHHHHHHHcCCCeEEeccc--ccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 155 (360)
-++.+++|+++|++.+-+++. -.++...- |...+ .+-..+.|+.+++.|+..+ +.+. +++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 468899999999997777772 22333221 20223 3567889999999999743 4443 56663 2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCcccccc
Q 018102 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~ 200 (360)
+ .+.|.+=.+.+.+.=-+.|..+...-+|......-+..|..
T Consensus 165 t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~ 206 (377)
T PRK08599 165 T---IEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKL 206 (377)
T ss_pred C---HHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCC
Confidence 2 33444444444332224455555556776544333333433
No 103
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=54.98 E-value=49 Score=33.09 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
++|++.+.+.|++.+|++++-|.+.-.. -+ .--.+.++...+.|+.+++.|+++.++.-
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8899999999999999999877654332 12 22346788899999999999999888753
No 104
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=54.76 E-value=37 Score=32.19 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=39.8
Q ss_pred cHHHHHHHHHcCCCeEEeccccc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
-+|.++.|+++|++.+-++++-+ .+.+.-.+ .. .++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~-~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIIS-TH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccC-CC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 47889999999999999998821 12322111 22 34678889999999999865543
No 105
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=53.62 E-value=1.1e+02 Score=30.32 Aligned_cols=87 Identities=25% Similarity=0.258 Sum_probs=61.2
Q ss_pred CCccCccccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhH
Q 018102 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (360)
Q Consensus 69 ~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~ 148 (360)
+-+|-=||+ |+- .....+.|+..+|+ -| | .+-.+ +....+++.++++|+..=+...|-.+..-+.
T Consensus 76 PLVaDiHf~-~rl-a~~~~~~g~~k~RI-------NP---G-Nig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~ 140 (361)
T COG0821 76 PLVADIHFD-YRL-ALEAAECGVDKVRI-------NP---G-NIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLL 140 (361)
T ss_pred CEEEEeecc-HHH-HHHhhhcCcceEEE-------CC---c-ccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHH
Confidence 334555666 332 23446778888885 33 5 44321 4789999999999999999999999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHH
Q 018102 149 ESMGGWLNKEIVKYFEIYADTC 170 (360)
Q Consensus 149 ~~~gg~~~~~~~~~F~~ya~~~ 170 (360)
++|++-+.+..++--.++++.+
T Consensus 141 ~ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 141 EKYGGPTPEALVESALEHAELL 162 (361)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 9998765555566555555554
No 106
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=53.43 E-value=25 Score=34.99 Aligned_cols=62 Identities=21% Similarity=0.119 Sum_probs=48.1
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.-.++|++.+.+.|++.+|+.++-|.+.-+. -+ .-..+.++...+.|+.+++.|+++.+++-
T Consensus 71 r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 71 RALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred ccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 3458999999999999999988877664332 12 12235678899999999999999988875
No 107
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.10 E-value=53 Score=31.15 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 140 (360)
.+|++...+.|++.+|+++..+ .++...++++.+++.|+++.+++.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5789999999999999987432 2466789999999999999998864
No 108
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=53.08 E-value=25 Score=38.60 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCC------CcCC--hhhHHHHHHHHHHHHHCCCeEEEEecc--CCC--------
Q 018102 82 DIDLIAKLGFDAYRFSISWSRIFPDGLG------TKIN--MEGITFYNNIIDALLQKGIQPYVTLYH--WDL-------- 143 (360)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g------~~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~h--~~~-------- 143 (360)
-+..+|+||++++=+.=-...-.-..-| ..++ .-..+-++++|++|.++||.+|+.+.+ ..-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~ 335 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNG 335 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccc
Confidence 3899999999999765322211000000 0000 011345899999999999999998653 211
Q ss_pred -----chhhHhhcCC----C-------CChHHHHHHHHHHHHHHHHhC
Q 018102 144 -----PLHLHESMGG----W-------LNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 144 -----P~~l~~~~gg----~-------~~~~~~~~F~~ya~~~~~~~~ 175 (360)
+.|+.....| | .++++...+.+-++.-+++|+
T Consensus 336 fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 336 FDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211011 2 356788888888888888876
No 109
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.00 E-value=1e+02 Score=29.83 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=63.7
Q ss_pred HHHHHHHHcCC--CeEEecccccccccCC--CC-CcCChhhHHHHHHHHHHHHHCCCeEEEEeccC---CCchhhH--hh
Q 018102 81 EDIDLIAKLGF--DAYRFSISWSRIFPDG--LG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLH--ES 150 (360)
Q Consensus 81 eDi~l~~~lG~--~~~R~si~W~ri~P~~--~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~--~~ 150 (360)
+-++-+++.|+ +++=+++.|....... .| -.+|.+.+---..||++|+++|+++++.++-+ +.|..-+ ++
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~ 107 (317)
T cd06598 28 DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKA 107 (317)
T ss_pred HHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhC
Confidence 33556666665 4666666775432211 11 13344444445789999999999999988643 3333211 00
Q ss_pred -c-------------------C---CCCChHHHHHHHHHHHHHHHHhCCCcc-EEEEecccccc
Q 018102 151 -M-------------------G---GWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (360)
Q Consensus 151 -~-------------------g---g~~~~~~~~~F~~ya~~~~~~~~~~V~-~w~t~NEp~~~ 190 (360)
| + .|+||+..+.|.+..+.+ +..-|+ +|.=+|||...
T Consensus 108 g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 108 GALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 1 256899999888877665 222344 48889999754
No 110
>PRK03705 glycogen debranching enzyme; Provisional
Probab=52.95 E-value=32 Score=37.14 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=55.4
Q ss_pred HHHHHHcCCCeEEeccc-----------------c-------cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 83 IDLIAKLGFDAYRFSIS-----------------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~-----------------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
|+-+|+||++++=+.=- | -.+.|.- |+..+ ..++=+++||++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~-~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPE-TALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCc-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999999865321 1 1222221 21111 235679999999999999999975
Q ss_pred c--cCC-----Cch----------hh--Hh--hcC---C------CCChHHHHHHHHHHHHHHHHhC
Q 018102 139 Y--HWD-----LPL----------HL--HE--SMG---G------WLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 139 ~--h~~-----~P~----------~l--~~--~~g---g------~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
. |-. .|. +. .. .|. | +.++.+.+.+.+-++.-++.||
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4 421 121 10 10 011 1 2367788888888887777766
No 111
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=52.58 E-value=37 Score=33.51 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=55.5
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 155 (360)
-++.++.|+++|++.+-+++. -+ ++...- |...+ .+-+.+.|+.+++.|+.++ +.|. +++|. .
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDLM-YGLPL---------Q 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------C
Confidence 368899999999997777763 32 233221 30122 4667889999999999754 4444 56663 1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
+.+.|.+-.+.+.+.=-+.+..+...=||+.
T Consensus 165 ---t~~~~~~~l~~~~~l~~~~is~y~l~~~~gT 195 (360)
T TIGR00539 165 ---TLNSLKEELKLAKELPINHLSAYALSVEPNT 195 (360)
T ss_pred ---CHHHHHHHHHHHHccCCCEEEeecceEcCCC
Confidence 2444555555544322245555555555553
No 112
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=52.57 E-value=53 Score=33.68 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCeEEecc-cccc-cccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 80 KEDIDLIAKLGFDAYRFSI-SWSR-IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W~r-i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
+|.+++|+++|++.+-+++ +-+. +...- +...+ ++.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 5668999999999888888 3322 22111 10123 35678999999999999888775 3555
No 113
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=52.15 E-value=79 Score=31.11 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccC-CCchhhHh--hcCCCCChHHHHHHHHHH
Q 018102 91 FDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW-DLPLHLHE--SMGGWLNKEIVKYFEIYA 167 (360)
Q Consensus 91 ~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~-~~P~~l~~--~~gg~~~~~~~~~F~~ya 167 (360)
++++=++|.|..-. +.- .+|.+.+---+.|+++|++.|++.++.++-+ ..-..... .+-.|.+|++.+.|.+..
T Consensus 40 ~D~i~lDidy~~~~--~~F-t~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~ 116 (332)
T cd06601 40 LDGLHVDVDFQDNY--RTF-TTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQY 116 (332)
T ss_pred CceEEEcCchhcCC--Cce-eecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHH
Confidence 34555666654211 111 3343333334789999999999988766421 10000000 012367889888777765
Q ss_pred HHHHHHhCCCccEEEEecccccccc
Q 018102 168 DTCFASFGDRVKNWITINEPLQTAV 192 (360)
Q Consensus 168 ~~~~~~~~~~V~~w~t~NEp~~~~~ 192 (360)
+.+.+ .| -.-.|+=+|||.++..
T Consensus 117 ~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 117 KYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHh-CC-CceeecCCCCcccccC
Confidence 54433 22 2236999999998754
No 114
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=51.32 E-value=99 Score=30.29 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCeEEEEeccCCC-----chhhHhh-------------c-----------CCCCChHHHHHHHHHHHHH
Q 018102 120 YNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES-------------M-----------GGWLNKEIVKYFEIYADTC 170 (360)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~h~~~-----P~~l~~~-------------~-----------gg~~~~~~~~~F~~ya~~~ 170 (360)
-..||++|++.|+++++.++-+-. |..-+.+ | -.+.||++++.|.+..+.+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 477999999999999888764422 2221110 0 1267899999999888877
Q ss_pred HHHhC-CCccEEEEeccccccc
Q 018102 171 FASFG-DRVKNWITINEPLQTA 191 (360)
Q Consensus 171 ~~~~~-~~V~~w~t~NEp~~~~ 191 (360)
....+ +-+-.|+=+|||.++.
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hhcccCCCceEEeccCCccccC
Confidence 65433 2346789999998753
No 115
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=50.64 E-value=1e+02 Score=30.54 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=63.4
Q ss_pred CCCccCccccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhh
Q 018102 68 NGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (360)
Q Consensus 68 ~~~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 147 (360)
.+-+|.-||+ |+--+. ..+.|+..+|+. + | .+-. -+..+.+++.++++|+..=+...|-.++.-+
T Consensus 73 iPlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P-G-Nig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~ 137 (346)
T TIGR00612 73 VPLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P-G-NIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRL 137 (346)
T ss_pred CCEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C-C-CCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHH
Confidence 3455666776 343332 457799999863 3 5 4432 2678999999999999999999999999999
Q ss_pred HhhcCCCCChHHHHHHHHHHHHH
Q 018102 148 HESMGGWLNKEIVKYFEIYADTC 170 (360)
Q Consensus 148 ~~~~gg~~~~~~~~~F~~ya~~~ 170 (360)
.++||+-+....++.-.++++.|
T Consensus 138 ~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 138 LEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99987644445566666666654
No 116
>PRK05660 HemN family oxidoreductase; Provisional
Probab=50.49 E-value=65 Score=32.12 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=58.3
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 155 (360)
-++.++.|+++|++.+-++|. =+ ++...- | ... ..+-..+.|+.+++.|+.++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~-r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRL-G-RIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHh-C-CCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 358899999999997777762 22 122111 2 111 23556778999999999875 5564 56663
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
++.+.|.+-.+.+.+.=-++|..+...=||+.
T Consensus 171 --qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 --QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23445555555555533366777776667664
No 117
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=50.46 E-value=44 Score=36.80 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=63.7
Q ss_pred HcCCCeEEeccc-ccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc---CCCchhhH--hh-c---------
Q 018102 88 KLGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH---WDLPLHLH--ES-M--------- 151 (360)
Q Consensus 88 ~lG~~~~R~si~-W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h---~~~P~~l~--~~-~--------- 151 (360)
++-+.++++++. |.+ .-+.= .+|..-+---+.||+.|++.||+.++.+.. -+.|..-+ ++ |
T Consensus 293 ~IP~d~~~lD~~~~~~--~~~~F-~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~ 369 (772)
T COG1501 293 DIPLDVFVLDIDFWMD--NWGDF-TWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEI 369 (772)
T ss_pred cCcceEEEEeehhhhc--cccce-EECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCE
Confidence 356779999995 876 22212 455544445579999999999999998763 23332211 11 0
Q ss_pred ------------CCCCChHHHHHHHHHHHHHHHHhCCC--ccEEEEecccccccc
Q 018102 152 ------------GGWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQTAV 192 (360)
Q Consensus 152 ------------gg~~~~~~~~~F~~ya~~~~~~~~~~--V~~w~t~NEp~~~~~ 192 (360)
-.|.||+.++.|.+ ...+.+.+. .-+|.=+|||.+...
T Consensus 370 ~~~~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~ 421 (772)
T COG1501 370 YQADFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDG 421 (772)
T ss_pred eeecccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCccccc
Confidence 12678999999887 333333332 456889999998743
No 118
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=50.36 E-value=76 Score=30.23 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=59.5
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEec-cCCCchhhHhhcCCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY-HWDLPLHLHESMGGWLN 156 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h~~~P~~l~~~~gg~~~ 156 (360)
-.+|++...+.|++.+++.++=|...-.. -+ .=-.+.++...+.++.+++.|+++.+++. .|+.|. .+-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNIN-CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC-
Confidence 47899999999999999998765543221 12 12246788999999999999999998876 355552 3333
Q ss_pred hHHHHHHHHHHHHHHH
Q 018102 157 KEIVKYFEIYADTCFA 172 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~ 172 (360)
..+.+.++++.+.+
T Consensus 147 --~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 --PPERVAEVAERLLD 160 (274)
T ss_pred --CHHHHHHHHHHHHH
Confidence 35666777777654
No 119
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=49.68 E-value=27 Score=38.90 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHcCCCeEEecc---------------cccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSI---------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si---------------~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.-..+-+..+++||++++=+|= ++.+|.|+- | +.+-+++++++++++||.+|+.+-
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G------GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3456778899999999986544 344444443 3 235689999999999999999864
No 120
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=49.33 E-value=1e+02 Score=30.35 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=48.7
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
.+.+|++|-+++.|=+-|. |+.+- .+|....++.+++.++|++.+|--++=+..++.+
T Consensus 112 ~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYD---VDDAE-EINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred HHHHHHhCCCeEEEEEEeC---CCCCh-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 6889999999999988874 33323 7888899999999999999999999988776544
No 121
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=49.06 E-value=88 Score=30.79 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCeEEecc-ccc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCCCC
Q 018102 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~ 156 (360)
++.+++|+++|+|.+-++| +-+ .+...- |...+ .+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~~---~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIHS---QKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6889999999999777777 432 222221 31122 3567889999999999855 6665 56663
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
++.+.|.+-.+.+.+-=-+.|..+...=||+.
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 23445555555544422245666555556654
No 122
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=48.83 E-value=1.2e+02 Score=29.61 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCC--eEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccC-----CCchhhHhh---
Q 018102 81 EDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW-----DLPLHLHES--- 150 (360)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~-----~~P~~l~~~--- 150 (360)
+-++.+++.||. ++=+.+.|..-. +.= .+|.+.+---..||++|+++|++.++.++-+ +.|..-+..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~~--~~f-~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g 104 (339)
T cd06604 28 EIADEFRERDIPCDAIYLDIDYMDGY--RVF-TWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEND 104 (339)
T ss_pred HHHHHHHHhCCCcceEEECchhhCCC--Cce-eeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCC
Confidence 344555555543 444444554321 101 2333222224789999999999988755422 122221110
Q ss_pred ----------c--------C---CCCChHHHHHHHHHHHHHHHHhCCCcc-EEEEecccccc
Q 018102 151 ----------M--------G---GWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (360)
Q Consensus 151 ----------~--------g---g~~~~~~~~~F~~ya~~~~~~~~~~V~-~w~t~NEp~~~ 190 (360)
| + .|.||++++.|.+.-+.+. ..-|+ +|+=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 105 YFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred eEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh---hCCCceEeecCCCcccc
Confidence 0 1 3678999988877666554 22344 48889999865
No 123
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=48.80 E-value=68 Score=29.75 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhC
Q 018102 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 117 l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~ 175 (360)
++...+.|..|++.|+++++++.-+.....+ ....+++..+.|++-+..++++|+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3567889999999999999999754433211 012456667777777777777776
No 124
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.06 E-value=1e+02 Score=30.33 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCC--eEEecccccccccCCCCCcCChhhHHHH--HHHHHHHHHCCCeEEEEeccCCCc--------hhhH
Q 018102 81 EDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFY--NNIIDALLQKGIQPYVTLYHWDLP--------LHLH 148 (360)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y--~~~i~~l~~~gi~p~vtL~h~~~P--------~~l~ 148 (360)
+-++.+++.|+. ++=+.+.|..-. ++= .+|.+.+--- .+||++|+++|+++++.+.-+-.+ .+-+
T Consensus 28 ~~~~~~r~~~iP~d~i~lD~~~~~~~--~~f-~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 28 EVVENMRAAGIPLDVQWNDIDYMDRR--RDF-TLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHHHhCCCcceEEECcccccCc--cce-ecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 344555555554 444555554321 111 2333333334 899999999999999887644322 2211
Q ss_pred h---h----------c--------C---CCCChHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 149 E---S----------M--------G---GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 149 ~---~----------~--------g---g~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
. . | + .++||+.++.|.+..+.+...+|- --+|.=+|||..
T Consensus 105 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 105 GLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 0 0 0 1 267889888888777766655443 355888999964
No 125
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=47.98 E-value=94 Score=34.27 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=65.3
Q ss_pred HHHHHHcCCC--eEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec---cCCCc-----------hh
Q 018102 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLP-----------LH 146 (360)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---h~~~P-----------~~ 146 (360)
++.+.++|+. ..=..|+|-.-..+ = .+|....-...++++.|.++|++.++++. +-+.. .|
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~ykD--F-Tvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~ 393 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGYKD--F-TVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVL 393 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhcccc--e-eeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhcee
Confidence 5677888877 55555565433322 2 56666666689999999999999999987 22222 00
Q ss_pred ----------hHhhcCC------CCChHHHHHHHHHHHHHHHHhCCCcc---EEEEeccccccc
Q 018102 147 ----------LHESMGG------WLNKEIVKYFEIYADTCFASFGDRVK---NWITINEPLQTA 191 (360)
Q Consensus 147 ----------l~~~~gg------~~~~~~~~~F~~ya~~~~~~~~~~V~---~w~t~NEp~~~~ 191 (360)
+.+-..| ++|+++++ ++...+++|.+.|. +|+-+|||.-+.
T Consensus 394 I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~----Ww~~~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 394 IKNREGSPKMLGEVWPGSTAFPDFTNPAVVE----WWLDELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred eecccCchhhhcccCCCcccccccCCchHHH----HHHHHHHhhcccCCccceEEECCCcccCC
Confidence 1110112 56665555 44455668888876 599999997654
No 126
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=47.60 E-value=56 Score=30.13 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=41.8
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCCCC-CcCChhhHHHHHHHHHHHHHCCCeEEEEe-ccCCCc
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTL-YHWDLP 144 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL-~h~~~P 144 (360)
-+.+++-+++++++|.+.+|+...+. |.... .+.....++..+++.+.+.+.||...+=. .+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 34566778899999999998654321 11100 01223345678888889999999877743 444444
No 127
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=47.31 E-value=1.1e+02 Score=30.74 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 140 (360)
..|++||++++++||+.|=+.|- .. . ..+. +....+++.+.+.|.+.++++.-
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d-~~~~---~~l~~a~~AA~~~gFKlf~SfD~ 69 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-D-SWQP---DQLADAYQAAEAVGFKLFFSFDM 69 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-C-cccH---HHHHHHHHHHHhcCCEEEEEecc
Confidence 35899999999999999877775 11 2 3443 66788999999999999888753
No 128
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=46.89 E-value=34 Score=39.71 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=40.0
Q ss_pred cccccH--HHHHHHHHcCCCeEEecccccccc-----cC------CCC----CcCCh----hhHHHHHHHHHHHHHCCCe
Q 018102 75 HYHRYK--EDIDLIAKLGFDAYRFSISWSRIF-----PD------GLG----TKINM----EGITFYNNIIDALLQKGIQ 133 (360)
Q Consensus 75 ~~~~~~--eDi~l~~~lG~~~~R~si~W~ri~-----P~------~~g----~~~n~----~~l~~y~~~i~~l~~~gi~ 133 (360)
.|.... +.|+-+|+||++++=+.=-..... +. |.. ..++. ...+=+++||++|.++||+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~ 262 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIA 262 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCE
Confidence 344444 568899999999986543221110 00 000 01111 1456789999999999999
Q ss_pred EEEEec
Q 018102 134 PYVTLY 139 (360)
Q Consensus 134 p~vtL~ 139 (360)
+|+.+.
T Consensus 263 VILDvV 268 (1221)
T PRK14510 263 VILDVV 268 (1221)
T ss_pred EEEEEc
Confidence 999754
No 129
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=46.35 E-value=1.1e+02 Score=30.49 Aligned_cols=87 Identities=24% Similarity=0.189 Sum_probs=60.5
Q ss_pred CCccCccccccHHHHH-HHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhh
Q 018102 69 GDVAVDHYHRYKEDID-LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (360)
Q Consensus 69 ~~~a~~~~~~~~eDi~-l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 147 (360)
+-+|.-||+. -++ ...+.|++.+| |-| | .+-.. -+..+.+++.++++|+..=+...|-.++.-+
T Consensus 82 PlvADIHFd~---~lAl~a~~~G~~~iR-------INP---G-Nig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~ 146 (360)
T PRK00366 82 PLVADIHFDY---RLALAAAEAGADALR-------INP---G-NIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDL 146 (360)
T ss_pred CEEEecCCCH---HHHHHHHHhCCCEEE-------ECC---C-CCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHH
Confidence 4445556543 122 23678999985 434 6 55210 2678999999999999999999999999999
Q ss_pred HhhcCCCCChHHHHHHHHHHHHH
Q 018102 148 HESMGGWLNKEIVKYFEIYADTC 170 (360)
Q Consensus 148 ~~~~gg~~~~~~~~~F~~ya~~~ 170 (360)
.++||+-.....++.-.++++.+
T Consensus 147 ~~~yg~~t~eamveSAl~~~~~l 169 (360)
T PRK00366 147 LEKYGEPTPEALVESALRHAKIL 169 (360)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99986534445566666666654
No 130
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.18 E-value=81 Score=32.46 Aligned_cols=92 Identities=12% Similarity=0.003 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCch----hhHh---h--
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL----HLHE---S-- 150 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~----~l~~---~-- 150 (360)
++|++.+.+.|++.+|+.++-+.+ ......|+.+++.|+.+.+++..-+.|. .+.+ +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 556799999999999999865433 1245678888999988877776544452 1111 1
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 151 -----------~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
-.|...|. ...+.++.+-++++ ..-.+.+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 165 EMGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred HcCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 14555654 34455666666664 3234556665554
No 131
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.96 E-value=1.5e+02 Score=28.76 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=47.9
Q ss_pred CChhhHHHHHHHHHHHHHCCCeEEEEeccC---CCchhhHhh---c--------------------CCCCChHHHHHHHH
Q 018102 112 INMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES---M--------------------GGWLNKEIVKYFEI 165 (360)
Q Consensus 112 ~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~~~---~--------------------gg~~~~~~~~~F~~ 165 (360)
+|.+.+---..||++|+++|+++++.++-+ +.+.+-+-+ | -.|+||++.+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 454444456899999999999998876422 122111100 0 12568888887766
Q ss_pred HHHHHHHHhCCCccEEEEeccccccc
Q 018102 166 YADTCFASFGDRVKNWITINEPLQTA 191 (360)
Q Consensus 166 ya~~~~~~~~~~V~~w~t~NEp~~~~ 191 (360)
..+..+...|= --+|+=+|||....
T Consensus 140 ~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcCCC-cEEEecCCCCCccC
Confidence 55543333322 34588999998653
No 132
>PRK07094 biotin synthase; Provisional
Probab=45.94 E-value=69 Score=30.91 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHcCCCeEEeccc-c-cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 78 RYKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.-+|.++.|+++|++.+-++++ - .++...-.. ..+ .+-+.+.++.+++.||.+..++.
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s---~~~~~~~i~~l~~~Gi~v~~~~i 186 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMS---FENRIACLKDLKELGYEVGSGFM 186 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCC---HHHHHHHHHHHHHcCCeecceEE
Confidence 4578999999999999988884 2 233333211 222 36688899999999998665543
No 133
>PRK14706 glycogen branching enzyme; Provisional
Probab=45.89 E-value=1.2e+02 Score=32.59 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=53.3
Q ss_pred HHHHHcCCCeEEecccccccccCC-C-C------CcCCh--hhHHHHHHHHHHHHHCCCeEEEEec--cCC---------
Q 018102 84 DLIAKLGFDAYRFSISWSRIFPDG-L-G------TKINM--EGITFYNNIIDALLQKGIQPYVTLY--HWD--------- 142 (360)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~-~-g------~~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~--h~~--------- 142 (360)
+.+|+||++++-+.=-= -.|.. . | ..++. -..+=++.+|++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~--e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVM--EHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchh--cCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 56899999997654210 01110 0 1 00111 1234589999999999999999754 432
Q ss_pred --Cchh-hHhhcC----CC-------CChHHHHHHHHHHHHHHHHhC
Q 018102 143 --LPLH-LHESMG----GW-------LNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 143 --~P~~-l~~~~g----g~-------~~~~~~~~F~~ya~~~~~~~~ 175 (360)
.|.+ ..+... .| .++++.+.+.+=++.-++.|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 000001 12 267888888899999998887
No 134
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=45.80 E-value=70 Score=30.17 Aligned_cols=58 Identities=22% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHcC----CCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 80 KEDIDLIAKLG----FDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 80 ~eDi~l~~~lG----~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
.+|+++..+.| ++.+|+.++.|.+.-.. -+ .=..+.++...++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK-KTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 78999999999 99999987665553221 12 1123467888899999999999877554
No 135
>PRK12677 xylose isomerase; Provisional
Probab=45.76 E-value=1.6e+02 Score=29.64 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=53.0
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCCCCh
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~~ 157 (360)
..|-++.++++|++.+=+.. ..+.|-. - ..... -+..+++-+.+.++||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~-~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-A-TDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-C-Chhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 57889999999999985532 2344432 1 11111 1357788888999999976 45554555543 23788773
Q ss_pred --HHHHHHHHHHHH---HHHHhCC
Q 018102 158 --EIVKYFEIYADT---CFASFGD 176 (360)
Q Consensus 158 --~~~~~F~~ya~~---~~~~~~~ 176 (360)
...+.-.++.+. ++..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333332444443 3455654
No 136
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=45.67 E-value=1.5e+02 Score=28.72 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=60.6
Q ss_pred HHHHHHcCCC--eEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC-----chhhHhh-----
Q 018102 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES----- 150 (360)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~-----P~~l~~~----- 150 (360)
++.+++.++. ++=+++.|..- .+.= .+|.+.+--..+||+.|+++|++.++.++-+-. |...+..
T Consensus 30 ~~~~~~~~iP~d~i~lD~~~~~~--~~~f-~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~ 106 (317)
T cd06600 30 VDIMQKEGFPYDVVFLDIHYMDS--YRLF-TWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKF 106 (317)
T ss_pred HHHHHHcCCCcceEEEChhhhCC--CCce-eechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEE
Confidence 4455555543 44455555431 1111 344444444578999999999998877653311 2221110
Q ss_pred -------------------cCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecccccc
Q 018102 151 -------------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (360)
Q Consensus 151 -------------------~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~ 190 (360)
+-.|.||+.++.|.+..+.+....|- .-+|+=+|||..+
T Consensus 107 v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 107 CEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred EECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 01267899999998887776554432 3468889999643
No 137
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=44.05 E-value=1.3e+02 Score=28.98 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCcc
Q 018102 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYC 196 (360)
Q Consensus 117 l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~ 196 (360)
++-+.+.++.++++||++.+.+. +++|. ++.+.+.+-++.+.+.=-+.|+.....-.|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 35678899999999999887765 45552 234556666666554333668888888888876555555
Q ss_pred ccccCC
Q 018102 197 TGIFAP 202 (360)
Q Consensus 197 ~g~~~p 202 (360)
.|.+.+
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666654
No 138
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=44.00 E-value=3.2e+02 Score=26.79 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=99.8
Q ss_pred cccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc---hh------------hHhhcC---------CCC---
Q 018102 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP---LH------------LHESMG---------GWL--- 155 (360)
Q Consensus 103 i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P---~~------------l~~~~g---------g~~--- 155 (360)
..|...+ -++.+.+..++++.+.++++|-..++=|.|.+.- .+ .... + +..
T Consensus 63 ~~~~~~~-l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~-~~~~~~~~~~~~~~p~ 140 (338)
T cd02933 63 GYPNTPG-IYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAE-GKVFTPAGKVPYPTPR 140 (338)
T ss_pred CCCCCCc-cCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCC-cccccccccCCCCCCC
Confidence 3443334 5677889999999999999999999999994421 10 0000 0 111
Q ss_pred ------ChHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCcccccc-CCCC-CCCCCchHHHHHHHHHHHHHHHH
Q 018102 156 ------NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGR-HQHSSTEPYLVAHHQILAHAAAF 227 (360)
Q Consensus 156 ------~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~-~p~~-~~~~~~~~~~~~hn~l~Aha~Av 227 (360)
-.++++.|++=|+.+.+-==|-|. +.+-.||+...| .|-. +..+.-.. .+-|-+.-..+.+
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVe---------ih~ahGyLl~qFlSp~~N~R~D~yGG--slenR~rf~~eii 209 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVE---------IHGANGYLIDQFLRDGSNKRTDEYGG--SIENRARFLLEVV 209 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEE---------EccccchhHHHhcCCccCCCCCcCCC--cHHHhhhHHHHHH
Confidence 135778888766665553223333 234557776554 2311 10010001 1234444445666
Q ss_pred HHHHHhhcCCCCceEEEeecCcccccC---CCCHHHH-HHHHHHHhhhccccccceeccCCC-------hHHHhhhccc-
Q 018102 228 SVYQRKYKDKQGGNIGLVVDCEWAEAN---SDKIEDK-SAAARRLDFQIGWYLHPIYYGDYP-------EVMRNNLGDQ- 295 (360)
Q Consensus 228 ~~~k~~~~~~~~~kVG~~~~~~~~~P~---~~~p~D~-~aa~~~~~~~~~~flD~~~~G~YP-------~~~~~~l~~~- 295 (360)
+.+|+..+ .+ .||+-++...+.+- ..+.+|. ..++..... .--+++. ..|.+. ..+.+.+++.
T Consensus 210 ~air~~vg--~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~-g~d~i~v-s~g~~~~~~~~~~~~~~~~ik~~~ 284 (338)
T cd02933 210 DAVAEAIG--AD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKR-GLAYLHL-VEPRVAGNPEDQPPDFLDFLRKAF 284 (338)
T ss_pred HHHHHHhC--CC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHc-CCcEEEE-ecCCCCCcccccchHHHHHHHHHc
Confidence 77776432 23 58888876544322 2345553 334433322 1112332 124332 1222222221
Q ss_pred -CC-----CCCHhHHHHh-c-CCCcEEEEc
Q 018102 296 -LP-----KFMQKDKELV-R-NSLDFVGLN 317 (360)
Q Consensus 296 -~p-----~~t~ed~e~i-k-g~~DFiGiN 317 (360)
.| .+++++.+.+ . +.+|++++.
T Consensus 285 ~ipvi~~G~i~~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 285 KGPLIAAGGYDAESAEAALADGKADLVAFG 314 (338)
T ss_pred CCCEEEECCCCHHHHHHHHHcCCCCEEEeC
Confidence 22 3456666654 3 679999984
No 139
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=43.80 E-value=37 Score=37.59 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHcCCCeEEeccccc---------------ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
....+-++.+++||++++=+|=-+. +|.|+- | +.+-+++++++|+++||.+|+.+.
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G------GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 3467778999999999986654332 333332 2 346689999999999999999863
No 140
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=43.70 E-value=4.8e+02 Score=28.67 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=90.5
Q ss_pred HHHcCCCeEEec---c-cccccccCCCCCcCChhhHHHHHHHHHHHHHC-CCeEEEEeccCCC-----chhhHh----hc
Q 018102 86 IAKLGFDAYRFS---I-SWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYVTLYHWDL-----PLHLHE----SM 151 (360)
Q Consensus 86 ~~~lG~~~~R~s---i-~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~-gi~p~vtL~h~~~-----P~~l~~----~~ 151 (360)
.++-|+-.+=.. + .-.++.|...| -++.+.+..++++++.+.++ |-..++=|.|-+- +.|... ..
T Consensus 440 rA~gG~glii~e~~~v~~~g~~~~~~~~-~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~ 518 (765)
T PRK08255 440 RALGGAGLVMTEMTCVSPEGRITPGCPG-LYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEE 518 (765)
T ss_pred HHcCCCcEEEECCeEECCCcCCCCCCCc-cCCHHHHHHHHHHHHHHHhcCCceEEEEccCCccccccccccccccccccc
Confidence 454555554222 1 23455555446 77888999999999999999 6899999998321 111100 00
Q ss_pred CCCC-----------------------ChHHHHHHHHHHHHHHHHhC-CCccEEEEecccccccccCcccccc-CCCCCC
Q 018102 152 GGWL-----------------------NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGRHQ 206 (360)
Q Consensus 152 gg~~-----------------------~~~~~~~F~~ya~~~~~~~~-~~V~~w~t~NEp~~~~~~gy~~g~~-~p~~~~ 206 (360)
++|. -.++++.|++=|+.+.+ -| |-|. +.+-.||+...| .|-..
T Consensus 519 ~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N- 587 (765)
T PRK08255 519 GNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTN- 587 (765)
T ss_pred CCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCC-
Confidence 2220 12367788877766544 33 3332 234567776544 23210
Q ss_pred CCCchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCcccccCCCCHHHH-HHHHHH
Q 018102 207 HSSTEPY-LVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDK-SAAARR 267 (360)
Q Consensus 207 ~~~~~~~-~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~~~~~P~~~~p~D~-~aa~~~ 267 (360)
..+..| -.+-|-+.--.++++.+|+..+ .+-.||+-++..-+.+...+++|. ..++..
T Consensus 588 -~RtD~yGGslenR~r~~~eiv~~ir~~~~--~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l 647 (765)
T PRK08255 588 -QRTDEYGGSLENRLRYPLEVFRAVRAVWP--AEKPMSVRISAHDWVEGGNTPDDAVEIARAF 647 (765)
T ss_pred -CCCCCCCCCHHHHhHHHHHHHHHHHHhcC--CCCeeEEEEccccccCCCCCHHHHHHHHHHH
Confidence 001001 1223445555567788887642 355788888765444433455553 444443
No 141
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=43.43 E-value=1.3e+02 Score=30.34 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=64.6
Q ss_pred cHHHHHHHHHcCCC--eEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccC---CCc---hhhHhh
Q 018102 79 YKEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLP---LHLHES 150 (360)
Q Consensus 79 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P---~~l~~~ 150 (360)
..+-++.+++.|+. ++=++..|..-... - .+|.+.+.-.+++++.|+++|++.++.++-+ +.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~--f-~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYGD--F-TWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTBT--T--B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHcCCCccceeccccccccccc--c-ccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 45556777777766 44455556553321 2 5666555567999999999999988876521 222 111100
Q ss_pred ---c-----CC----------------CCChHHHHHHHHHHHHHHHHhCCCccEEEEecccccc
Q 018102 151 ---M-----GG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (360)
Q Consensus 151 ---~-----gg----------------~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~ 190 (360)
+ .| |.+++..+.|.+..+.+++.+|= --+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 0 11 77899899888877776666542 2458899999974
No 142
>PRK01060 endonuclease IV; Provisional
Probab=42.37 E-value=1.3e+02 Score=28.05 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=36.9
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~ 135 (360)
+++-++.++++|++.+=+.+.-++.... + .++. +..+.+-+.+.++||++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~-~~~~---~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--K-PLEE---LNIEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--C-CCCH---HHHHHHHHHHHHcCCCCC
Confidence 6788999999999999988765554432 2 4555 345666677889999853
No 143
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=42.33 E-value=91 Score=29.01 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=45.9
Q ss_pred ecccccccccCCCCCcCChh-hHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 018102 96 FSISWSRIFPDGLGTKINME-GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASF 174 (360)
Q Consensus 96 ~si~W~ri~P~~~g~~~n~~-~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~ 174 (360)
+.+.|..+-++| .+... .......+++.++++|+++++.+..+....... -..++...+.|++=+-..+++|
T Consensus 26 v~~~f~~i~~~G---~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 26 INLAFANPDANG---TLNANPVRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEEECCCC---eEEecCcHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 444566665544 22211 124567889999999999999997655432111 1246777778877777777776
Q ss_pred C
Q 018102 175 G 175 (360)
Q Consensus 175 ~ 175 (360)
+
T Consensus 99 ~ 99 (253)
T cd06545 99 N 99 (253)
T ss_pred C
Confidence 5
No 144
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=42.32 E-value=44 Score=33.86 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCeEEecc--------------cccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 81 EDIDLIAKLGFDAYRFSI--------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 81 eDi~l~~~lG~~~~R~si--------------~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
+-++.+++||++++=++= .+.+|-|. .-.++-.+++|+++.++||++++.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~-------~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH-------FGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc-------cCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 667899999999984332 12222222 1245778999999999999999987
No 145
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=42.05 E-value=98 Score=31.44 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=55.1
Q ss_pred cHHHHHHHHHcCCCeEEecc-cc-cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 155 (360)
-++.+++|+++|++.+-+++ += .++...- |...+ .+-..+.|+.|++.|+..+ ++|. +++|. .
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~---------q 205 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQK---RADVHQALEWIRAAGFPILNIDLI-YGIPG---------Q 205 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 46779999999999777777 33 1222221 21223 3567889999999999864 5554 56663 2
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CCccEEEEeccccc
Q 018102 156 NKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQ 189 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~-~~V~~w~t~NEp~~ 189 (360)
+.+.|.+=.+.+.+ ++ +.|..+...-+|+.
T Consensus 206 ---t~e~~~~~l~~~~~-l~~~~is~y~L~~~~~T 236 (430)
T PRK08208 206 ---THASWMESLDQALV-YRPEELFLYPLYVRPLT 236 (430)
T ss_pred ---CHHHHHHHHHHHHh-CCCCEEEEccccccCCC
Confidence 24445454554443 33 45555554445543
No 146
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=41.38 E-value=2.1e+02 Score=25.15 Aligned_cols=50 Identities=14% Similarity=0.398 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
|.+.+|+.|++.+=+=+. +|.+ ..| ..|..-++.++++|| .+..+||..|
T Consensus 13 d~~~~k~~gi~fviiKat------eG~~-y~D----~~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGTT-FVD----SYFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCCc-ccC----HhHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 566777777664322221 2322 456 467778888888887 3577776654
No 147
>PLN02960 alpha-amylase
Probab=41.02 E-value=47 Score=37.01 Aligned_cols=95 Identities=11% Similarity=0.227 Sum_probs=59.5
Q ss_pred ccccccHHH-HHHHHHcCCCeEEeccc--------c-------cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEE
Q 018102 74 DHYHRYKED-IDLIAKLGFDAYRFSIS--------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (360)
Q Consensus 74 ~~~~~~~eD-i~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (360)
..|.-..+. ++.+++||++++=+.=- | -.+.|.- | ..+=++.+|++|.++||.+|+.
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-G------tp~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-G------TPDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-C------CHHHHHHHHHHHHHCCCEEEEE
Confidence 345555444 89999999999875421 1 1111111 2 2345899999999999999998
Q ss_pred ec--cCCC--c--h---------hhHh--h--cCCC-------CChHHHHHHHHHHHHHHHHhC
Q 018102 138 LY--HWDL--P--L---------HLHE--S--MGGW-------LNKEIVKYFEIYADTCFASFG 175 (360)
Q Consensus 138 L~--h~~~--P--~---------~l~~--~--~gg~-------~~~~~~~~F~~ya~~~~~~~~ 175 (360)
+. |+.. + . ++.. . +..| .++++.+.+.+=++.-+++|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 74 4321 1 0 1110 0 0112 357888889999999898887
No 148
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=40.21 E-value=20 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=31.3
Q ss_pred cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCC
Q 018102 101 SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (360)
Q Consensus 101 ~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 142 (360)
+++.|+. + .=-.++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~-~-~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-G-ADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-c-cccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5778875 4 3446789999999999999999 888887643
No 149
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.72 E-value=1.1e+02 Score=32.57 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc----hhhHhh-----
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----LHLHES----- 150 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P----~~l~~~----- 150 (360)
++|++++.+.|++.+|+..+.+.+ +-....|+.++++|+.+.+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 445899999999999998765433 235667788888888888777655455 111110
Q ss_pred -----------cCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecccccc
Q 018102 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (360)
Q Consensus 151 -----------~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~ 190 (360)
-.|...|. ...+.++.+.++++ ..-.+.+-|-..+.
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 14555554 34455666666765 22346677766543
No 150
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=39.45 E-value=99 Score=26.23 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCC
Q 018102 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDR 177 (360)
Q Consensus 117 l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~ 177 (360)
.+=+.-+++.|++.|++|++.+.= -.+.|.. |-|. +++..+.|.+=.+..++++|=.
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 344688999999999999999851 1123432 4563 5677888888888888888764
No 151
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=38.65 E-value=95 Score=37.30 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=39.9
Q ss_pred cHHHHHHHHHcCCCeEEeccccc---------------ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
..+-++.+++||++++=+|=-+. +|.|+- | +.+-+++++++|+++||.+|+.+.
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G------GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEec
Confidence 44568899999999986654443 333332 3 345689999999999999999864
No 152
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=38.62 E-value=99 Score=29.80 Aligned_cols=62 Identities=24% Similarity=0.517 Sum_probs=44.2
Q ss_pred cHHHHHHHHHcCCCeEEeccc----ccc---cccC------------CCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS----WSR---IFPD------------GLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~----W~r---i~P~------------~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.| .+.. +=++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~-~yT~---~di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGG-FYTY---AQLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCC-eECH---HHHHHHHHHHHHcCCEEEEec-
Confidence 566789999999999877775 521 1121 113 5565 447999999999999999877
Q ss_pred cCCCchhh
Q 018102 140 HWDLPLHL 147 (360)
Q Consensus 140 h~~~P~~l 147 (360)
|+|...
T Consensus 93 --D~PGH~ 98 (303)
T cd02742 93 --DMPGHS 98 (303)
T ss_pred --cchHHH
Confidence 466543
No 153
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=38.39 E-value=1.5e+02 Score=29.77 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCCeEEecc-cc-cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCCh
Q 018102 80 KEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 157 (360)
++.++.|+++|+|.+-+++ |- .++...- | ... ..+-..+.++.+++.++.+-++|. +++|.-
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l-g-R~h--~~~~~~~ai~~~~~~~~~v~~DlI-~GlPgq----------- 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKL-G-RTH--DCMQAIKTIEAANTIFPRVSFDLI-YARSGQ----------- 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHHc-C-CCC--CHHHHHHHHHHHHHhCCcEEEEee-cCCCCC-----------
Confidence 5889999999999777777 32 2222221 3 221 134456677888888888888887 677731
Q ss_pred HHHHHHHHHHHHHHHHhCCCccEEEEeccccccc
Q 018102 158 EIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (360)
Q Consensus 158 ~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~ 191 (360)
+.+.+.+=++.+++-=-++|..+...=||+...
T Consensus 175 -t~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l 207 (390)
T PRK06582 175 -TLKDWQEELKQAMQLATSHISLYQLTIEKGTPF 207 (390)
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEecCEEccCChH
Confidence 233444445554443235677777777776543
No 154
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=38.17 E-value=1.7e+02 Score=27.38 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=37.5
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHC-CCeEEE
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYV 136 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~-gi~p~v 136 (360)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5678999999999999998888665443332 2233 4567777777777 666544
No 155
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=37.83 E-value=60 Score=35.27 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHHHcCCCeEEeccccccccc-----------CCCC----CcCCh-----hhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFP-----------DGLG----TKINM-----EGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P-----------~~~g----~~~n~-----~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
|+-+|+||++++=+.=-=.-... .|.. ..++. -.++=+++||++|.++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 78999999999875431110000 0100 01111 1245689999999999999999854
No 156
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=37.75 E-value=63 Score=33.04 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=38.9
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCe-EEEEeccCCCc
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLP 144 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P 144 (360)
-++.+++|+++|++.+-+++. =+ ++...- +...+ .+.+.+.++.|++.|++ +-+.|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l-~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAV-NRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-CCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 367899999999997666662 22 122111 20222 35678999999999997 445553 4555
No 157
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=37.11 E-value=1.2e+02 Score=30.97 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=39.3
Q ss_pred cHHHHHHHHHcCCCeEEeccc-cc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCC-eEEEEeccCCCc
Q 018102 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLP 144 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi-~p~vtL~h~~~P 144 (360)
-+|.+++|+++|++.+.+++. =+ ++...- +... ..+-..+.++.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l-~r~~---~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV-NRIQ---PFEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh-CCCC---CHHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 468899999999997777773 22 111111 2022 23567788999999999 4555554 5566
No 158
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=36.34 E-value=1.2e+02 Score=28.98 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=55.6
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC----chhhHhhcCCCCChH
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL----PLHLHESMGGWLNKE 158 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~----P~~l~~~~gg~~~~~ 158 (360)
.+.+++.+-+.=-++..|-.|-|++ .+.. ....++++.++++|+++++++..++- +.-+.. -..++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~ 86 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPE 86 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHH
Confidence 5666666666666888999997764 4432 23468999999999999999986541 111110 123566
Q ss_pred HHHHHHHHHHHHHHHhC
Q 018102 159 IVKYFEIYADTCFASFG 175 (360)
Q Consensus 159 ~~~~F~~ya~~~~~~~~ 175 (360)
..+.|++=+..++++|+
T Consensus 87 ~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 87 ARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 67777777777777775
No 159
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=36.25 E-value=71 Score=32.68 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=38.7
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCCh-hhHHHHHHHHHHHHHCCCe-EEEEeccCCCc
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINM-EGITFYNNIIDALLQKGIQ-PYVTLYHWDLP 144 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~-~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P 144 (360)
-++.+++|+++|++.+-+++. -.-|+--. .++. ...+-..+.|+.+++.|+. +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGvQ--S~~~~vl~-~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGVQ--DFDPQVQK-AINRIQPEEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCC--CCCHHHHH-HhCCCCCHHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 468899999999996666662 22221100 1111 1245678899999999997 445554 4566
No 160
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=36.21 E-value=1.2e+02 Score=27.74 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHHHHH----HHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCC
Q 018102 80 KEDIDL----IAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (360)
Q Consensus 80 ~eDi~l----~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~ 154 (360)
.+|++. +++.|++.+|+.++=+...... -+ .--.+.++...++++.+++.|+++.+++-+.+ .
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~ 133 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLN-KSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------R 133 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTC-SHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------G
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhc-CCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------c
Confidence 455554 4569999999998765544332 12 22245788899999999999999988775421 1
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 018102 155 LNKEIVKYFEIYADTCFAS 173 (360)
Q Consensus 155 ~~~~~~~~F~~ya~~~~~~ 173 (360)
.+ .+.+.++++.+.+.
T Consensus 134 ~~---~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 134 TD---PEELLELAEALAEA 149 (237)
T ss_dssp SS---HHHHHHHHHHHHHH
T ss_pred cc---HHHHHHHHHHHHHc
Confidence 22 45666777776655
No 161
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=35.70 E-value=74 Score=30.19 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccC
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 141 (360)
..+++++++.|++.+|+.++=|...-.. .| .-..+.++...+.++.+++.|+++.++.-+|
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALG-TTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 3678999999999999988655443221 12 2224678899999999999999998876554
No 162
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.56 E-value=83 Score=33.53 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEec--cCC----------CchhhHh--h------cCCC------CChHHHHHHHHHHHHH
Q 018102 117 ITFYNNIIDALLQKGIQPYVTLY--HWD----------LPLHLHE--S------MGGW------LNKEIVKYFEIYADTC 170 (360)
Q Consensus 117 l~~y~~~i~~l~~~gi~p~vtL~--h~~----------~P~~l~~--~------~gg~------~~~~~~~~F~~ya~~~ 170 (360)
++=+++||++|.++||++|+.+. |.. .|.|... . +.|+ .++.+.+.+.+-++.-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W 307 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYW 307 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHH
Confidence 45689999999999999999754 532 1222210 0 0122 2567777777777777
Q ss_pred HHHhC
Q 018102 171 FASFG 175 (360)
Q Consensus 171 ~~~~~ 175 (360)
+++|+
T Consensus 308 ~~e~~ 312 (605)
T TIGR02104 308 VKEYN 312 (605)
T ss_pred HHHcC
Confidence 77765
No 163
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.50 E-value=1.7e+02 Score=27.45 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.+|++...+.|++.+|+.++.+.+ .-..++++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998765533 2357789999999999999885
No 164
>PTZ00445 p36-lilke protein; Provisional
Probab=35.34 E-value=81 Score=29.25 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=40.2
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChh---------hHHHHHHHHHHHHHCCCeEEEEec
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINME---------GITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~---------~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
++++++.|++++=+.++=+-|.-...| -.++. +-.-...++.+|++.||.++|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG-~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGG-YIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhccc-ccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 688999999999888876655422213 22222 234578899999999999998886
No 165
>PLN02389 biotin synthase
Probab=35.00 E-value=1.2e+02 Score=30.52 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHcCCCeEEecccccc-cccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSR-IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~r-i~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
..-+|.++.||++|++.|-.+++=++ ++|+-.. .- .++..-+.++.+++.||++..++.
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 35689999999999999998885222 4444211 12 346788999999999999877654
No 166
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.99 E-value=3e+02 Score=27.01 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=40.9
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec--cCCCchhh
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHL 147 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~~P~~l 147 (360)
..+|++.+.+.|++.+|+....+.. +...+.|+.+++.|+++.+.+. |...|..+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 3689999999999999988753322 2357889999999999887773 44444443
No 167
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=34.92 E-value=2.1e+02 Score=28.22 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCeEEecc-ccc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCe-EEEEeccCCCchhhHhhcCCCCC
Q 018102 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWLN 156 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~~ 156 (360)
+|.+++|+++|++.+-+++ +=+ ++...- |...+ .+-+.+.++.+++.|+. +-++|. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6889999999999766666 221 222221 21223 35578899999999997 445654 56662
Q ss_pred hHHHHHHHHHHHHHHHHhC-CCccEEEEecccccc
Q 018102 157 KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQT 190 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~~~~-~~V~~w~t~NEp~~~ 190 (360)
++.+.|.+=.+.+.+ ++ +.|..+...=||+..
T Consensus 167 -qt~e~~~~tl~~~~~-l~p~~is~y~L~~~~gT~ 199 (353)
T PRK05904 167 -LKLKDLDEVFNFILK-HKINHISFYSLEIKEGSI 199 (353)
T ss_pred -CCHHHHHHHHHHHHh-cCCCEEEEEeeEecCCCh
Confidence 234455555554433 33 556666655566643
No 168
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=34.61 E-value=3e+02 Score=27.62 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=53.3
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc-CCCchhhHhhcCCCC
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~ 155 (360)
-...+-++.++++|++.+= +....+.|-. - ...... ...+++=+.|.++||++...... +..|.+ +.|++.
T Consensus 32 ~~~~e~i~~la~~GfdgVE--~~~~dl~P~~-~-~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~la 103 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVT--FHDDDLIPFG-A-PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFT 103 (382)
T ss_pred cCHHHHHHHHHHhCCCEEE--ecccccCCCC-C-ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCC
Confidence 3567889999999999974 3444555543 1 111111 34677888899999997654332 223333 126777
Q ss_pred Ch--HHHHHHHHHHH---HHHHHhCCC
Q 018102 156 NK--EIVKYFEIYAD---TCFASFGDR 177 (360)
Q Consensus 156 ~~--~~~~~F~~ya~---~~~~~~~~~ 177 (360)
++ ++.+.=.++.+ .+++.+|-.
T Consensus 104 s~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 104 SNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 64 33333223333 246667664
No 169
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=34.42 E-value=99 Score=28.85 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCC---CChHHHHHHHHHHHHHHHHhCCCccE
Q 018102 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW---LNKEIVKYFEIYADTCFASFGDRVKN 180 (360)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~---~~~~~~~~F~~ya~~~~~~~~~~V~~ 180 (360)
...+++++++.++|++-+.-.-|..+|..+.. ..| .+.+..+.|.+-++.+-++|+++|+.
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I 78 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKI 78 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 44789999999999999999999765432211 112 12233555555566677889876553
No 170
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=34.10 E-value=2.7e+02 Score=23.71 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHcCCCeEEeccc-ccccccC-CCCCcCChhhHHHHHHHHHHHHHCC-CeEEEEe
Q 018102 78 RYKEDIDLIAKLGFDAYRFSIS-WSRIFPD-GLGTKINMEGITFYNNIIDALLQKG-IQPYVTL 138 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~-W~ri~P~-~~g~~~n~~~l~~y~~~i~~l~~~g-i~p~vtL 138 (360)
.-++.++.|++.|++.+.+|+. ++.-.-+ -.. ..+ .+.+.+.|+.+++.| +.+-+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~-~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR-GHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 3467799999999999999995 5432111 101 122 377899999999999 6655444
No 171
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.99 E-value=69 Score=30.73 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhc
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM 151 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 151 (360)
++-+++++++|++.+.+..- + .=++..+++|+++++.+.+++| +|.+|--..|.=+...|
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~---------~-~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM---------D-RDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-----------S-STSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHcCCCEEeeCcC---------C-CCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 56689999999999998873 2 2467789999999999999987 56666545555444433
No 172
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=33.93 E-value=2e+02 Score=28.61 Aligned_cols=105 Identities=9% Similarity=-0.037 Sum_probs=61.7
Q ss_pred cHHHHHHHHHcCCCeEEecc-ccc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~ 156 (360)
-.+.++.|+++|+|.+-+++ |=+ ++...- |...+ .+-..+.++.+++.++.+.+.|. +++|..
T Consensus 103 ~~e~L~~l~~~GvnrislGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~~~~~~~~v~~dli-~GlPgq---------- 167 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSLGVQALNDADLRFL-GRLHS---VAEALAAIDLAREIFPRVSFDLI-YARPGQ---------- 167 (380)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHhCccEEEEee-cCCCCC----------
Confidence 34899999999999877777 322 222221 20122 24456778888888888888886 566631
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCcccccc
Q 018102 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~ 200 (360)
+.+.+.+=.+.+.+.=-++|..+...-||+.....-+..|.+
T Consensus 168 --t~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~ 209 (380)
T PRK09057 168 --TLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKL 209 (380)
T ss_pred --CHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCC
Confidence 233333334444432125688888878887644333333433
No 173
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=32.86 E-value=1.4e+02 Score=30.04 Aligned_cols=94 Identities=19% Similarity=0.370 Sum_probs=56.7
Q ss_pred HcCCCeEEecccccccccCCCCCcCChhhHHHHHHHH--HHHHHCCCeEEEEeccCCCchhhHhhc---CC---CCChHH
Q 018102 88 KLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNII--DALLQKGIQPYVTLYHWDLPLHLHESM---GG---WLNKEI 159 (360)
Q Consensus 88 ~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i--~~l~~~gi~p~vtL~h~~~P~~l~~~~---gg---~~~~~~ 159 (360)
++|+...|+.|.=.+.--. | ..|. +|+++= ...+..|+.++.+- |..|.|+-... || -+.++-
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g-~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~ 147 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--G-SADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEK 147 (433)
T ss_pred ccCceEEEEEecccccccC--C-Ccch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhH
Confidence 4899999998865554322 4 5552 333332 22567888888776 78999976531 33 344443
Q ss_pred HHHHHHHHHHHHHHhCC---CccEEEEecccccc
Q 018102 160 VKYFEIYADTCFASFGD---RVKNWITINEPLQT 190 (360)
Q Consensus 160 ~~~F~~ya~~~~~~~~~---~V~~w~t~NEp~~~ 190 (360)
-..|+.|-...+..+++ -+.+-.+=|||...
T Consensus 148 Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 148 YADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 34444444444455554 35667789999865
No 174
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=32.63 E-value=1.1e+02 Score=31.77 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCCeEEecc-ccc-ccccCCCCCcCChhhHHHHHHHHHHHHHCCC-eEEEEeccCCCchhhHhhcCCCCC
Q 018102 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGI-QPYVTLYHWDLPLHLHESMGGWLN 156 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi-~p~vtL~h~~~P~~l~~~~gg~~~ 156 (360)
++-++.|+++|++.+-+++ +-+ ++...- | .- -..+-..+.++.+++.|+ .+-+.|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i-g-R~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg----------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKAI-G-RH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG----------- 332 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHHh-C-CC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC-----------
Confidence 6778999999999444444 222 122111 2 11 134667889999999999 4556665 56663
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
++.+.|.+-.+.+.+.=-+.|......=+|..
T Consensus 333 -Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT 364 (488)
T PRK08207 333 -EGLEEVKHTLEEIEKLNPESLTVHTLAIKRAS 364 (488)
T ss_pred -CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCC
Confidence 23445555555544332245555554444443
No 175
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.01 E-value=4.2e+02 Score=24.60 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=35.1
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEE
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~v 136 (360)
+.+-+++++++|++.+=+++.=....+.. . .++. ...+.+-+.++++||++..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~-~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR-L-DWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc-c-CCCH---HHHHHHHHHHHHcCCceeE
Confidence 67889999999999987754311111111 1 1233 4567888889999999753
No 176
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=31.95 E-value=92 Score=29.87 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=48.3
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
-.--.+|++...++|++.+-+.++=|...-.. -+ .=-++.++.+.++++.++++|+++-+++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK-MTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-cCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34458999999999999999888665554432 13 2234688999999999999999999888
No 177
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=31.88 E-value=2e+02 Score=29.34 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=41.2
Q ss_pred ccccccHHH-----HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 74 DHYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 74 ~~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
--|.+|.+| +++..+-|++.||.. . ..|. +.-...-|+..++.|.....++..=..|
T Consensus 90 vGYrhyaDDvVe~Fv~ka~~nGidvfRiF-----------D-AlND--~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 90 VGYRHYADDVVEKFVEKAAENGIDVFRIF-----------D-ALND--VRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred ccccCCchHHHHHHHHHHHhcCCcEEEec-----------h-hccc--hhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 357788888 477899999999953 2 3332 3456778888999999888888743344
No 178
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.62 E-value=56 Score=28.46 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=40.6
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCCC-CCcCChhhHHHHHHHHHHHHHCCCeEEEE
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVT 137 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (360)
....++-+++++.+|++.+++...+-...+... ...+ ....+.++.+++.+.++|+++.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceEEEe
Confidence 456778899999999999999976411111110 0011 235678888888899999876654
No 179
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.59 E-value=1.8e+02 Score=30.20 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCeEEeccc--ccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 80 KEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
++-+++|+++|++.+-++++ =.++...-.. ..+ ++-..+.|+.|+++||.+.+.+. +++|
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K-~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRK-GTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 45578999999998888873 1222221111 233 35578899999999999887654 3555
No 180
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=31.07 E-value=5.4e+02 Score=25.56 Aligned_cols=131 Identities=16% Similarity=0.116 Sum_probs=73.9
Q ss_pred CCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC-------------chhhHhhc--CC------CC---ChHHHHHHH
Q 018102 109 GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-------------PLHLHESM--GG------WL---NKEIVKYFE 164 (360)
Q Consensus 109 g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~-------------P~~l~~~~--gg------~~---~~~~~~~F~ 164 (360)
| -++.+.+.-++++++.++++|-..++=|+|-+. |.-+.... +. -+ -.++++.|+
T Consensus 75 ~-l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (370)
T cd02929 75 R-LWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYV 153 (370)
T ss_pred C-cCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHH
Confidence 6 678889999999999999999999999998532 00000000 00 00 124778888
Q ss_pred HHHHHHHHHhCCCccEEEEecccccccccCcccccc-CCCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHhhcCCCCceE
Q 018102 165 IYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (360)
Q Consensus 165 ~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~-~~~hn~l~Aha~Av~~~k~~~~~~~~~kV 242 (360)
+=|+.+.+-=-|-|. +.+-.||+...| .|.. +..+..| -.+-|-+.--...++.+|+.. .++-.|
T Consensus 154 ~AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~--N~RtD~yGGslenR~Rf~~eii~aIr~~v--g~~~~v 220 (370)
T cd02929 154 DAALRARDAGFDIVY---------VYAAHGYLPLQFLLPRY--NKRTDEYGGSLENRARFWRETLEDTKDAV--GDDCAV 220 (370)
T ss_pred HHHHHHHHcCCCEEE---------EcccccchHHHhhCccc--cCCccccCCChHhhhHHHHHHHHHHHHHc--CCCceE
Confidence 877665553113332 234557776544 2321 0000001 012344444456777788753 245578
Q ss_pred EEeecCccccc
Q 018102 243 GLVVDCEWAEA 253 (360)
Q Consensus 243 G~~~~~~~~~P 253 (360)
|+-++.....|
T Consensus 221 ~vRls~~~~~~ 231 (370)
T cd02929 221 ATRFSVDELIG 231 (370)
T ss_pred EEEecHHHhcC
Confidence 88887655444
No 181
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=30.96 E-value=1.6e+02 Score=32.04 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHH
Q 018102 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCF 171 (360)
Q Consensus 120 y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~ 171 (360)
...+|+.|+++|+..=+...|..++.-+..+||. +....++.-.+|++.|-
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e 262 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICR 262 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999875 43445555556665543
No 182
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=30.87 E-value=3e+02 Score=28.51 Aligned_cols=87 Identities=17% Similarity=0.310 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCC-CcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCC
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 155 (360)
.|.++-.++++++|+|..-+.= +--.... --++..-|+....+-|..+.+||++++++. |..|..| ||..
T Consensus 183 qR~kDYAR~laSiGINg~v~NN----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~ 253 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNN----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLK 253 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecc----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcC
Confidence 5566667799999999876532 1111001 024444567778888999999999999996 7889765 6643
Q ss_pred -----ChHHHHHHHHHHHHHHH
Q 018102 156 -----NKEIVKYFEIYADTCFA 172 (360)
Q Consensus 156 -----~~~~~~~F~~ya~~~~~ 172 (360)
.+.+...+.+=|+.+.+
T Consensus 254 TADPLDe~VrawWkeka~~IY~ 275 (684)
T COG3661 254 TADPLDEAVRAWWKEKADEIYK 275 (684)
T ss_pred cCCcccHHHHHHHHHHHHHHHH
Confidence 34445545544444443
No 183
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.43 E-value=1.8e+02 Score=28.06 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=43.1
Q ss_pred cHHHHHHHHHcCCCeEEecc----cccccccCC---CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhh
Q 018102 79 YKEDIDLIAKLGFDAYRFSI----SWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHL 147 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si----~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 147 (360)
.++-|++|+.+|+|.+-+=+ .++. .|+- .| .+.. +=++++++.++++||++|..+- +|..+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~-~yT~---~ei~ei~~yA~~~gI~vIPeid---~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRG-AYTK---EEIREIDDYAAELGIEVIPLIQ---TLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCC-CcCH---HHHHHHHHHHHHcCCEEEecCC---CHHHH
Confidence 67778999999999887644 2221 1221 25 6666 4479999999999999998774 55443
No 184
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.35 E-value=74 Score=29.63 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=39.2
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEE
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (360)
...++.-+++++.+|.+++++........+.. . ..-...++.++.+.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-N-VIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-H-HHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 44556667899999999999864322111111 1 111345678889999999999976553
No 185
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=30.31 E-value=1.7e+02 Score=27.77 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHH
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDAL 127 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l 127 (360)
.....+||++++++|++-+=|++. +++| .+|.+. ..++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L------~~dg-~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL------DVDG-HVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE------CCCC-CcCHHH---HHHHHHHh
Confidence 345678999999999999999985 3347 899744 56666666
No 186
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.69 E-value=1.6e+02 Score=27.23 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=38.0
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCC-CcCChhhHHHHHHHHHHHHHCCCeEEEE-eccCCCc
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVT-LYHWDLP 144 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vt-L~h~~~P 144 (360)
.++=+++++++|.+.+++...+ . |.+.. .+.-....+..+++.+.+.++||+..+= +.|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 4566789999999999874332 1 21100 0111223466677788888999987663 3454444
No 187
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=29.53 E-value=5.7e+02 Score=25.35 Aligned_cols=191 Identities=16% Similarity=0.116 Sum_probs=102.0
Q ss_pred cCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCch-----------hhH----hh--------------cCCC----C--
Q 018102 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL-----------HLH----ES--------------MGGW----L-- 155 (360)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~-----------~l~----~~--------------~gg~----~-- 155 (360)
-+|.+.+.-++++.+.++++|-..++=|+|-+--. +-- .. ..+- .
T Consensus 72 l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~ 151 (362)
T PRK10605 72 LHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALEL 151 (362)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCH
Confidence 56888899999999999999999999999943210 000 00 0000 0
Q ss_pred --ChHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCcccccc-CCCCCCCCCchHH-HHHHHHHHHHHHHHHHHH
Q 018102 156 --NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAHAAAFSVYQ 231 (360)
Q Consensus 156 --~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~-~~~hn~l~Aha~Av~~~k 231 (360)
-.++++.|++=|+.+.+-==|-|. +.+-.||+...| .|.. +..+..| -.+-|-+.---.+++.+|
T Consensus 152 ~eI~~ii~~f~~AA~rA~~AGfDGVE---------Ih~ahGyLl~qFLSp~~--N~RtDeYGGslENR~Rf~~Eiv~aVr 220 (362)
T PRK10605 152 EEIPGIVNDFRQAIANAREAGFDLVE---------LHSAHGYLLHQFLSPSS--NQRTDQYGGSVENRARLVLEVVDAGI 220 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEE---------EcccccchHHHhcCCcC--CCCCCcCCCcHHHHHHHHHHHHHHHH
Confidence 045788888877665553224343 345668886655 3332 1111111 122344555556777788
Q ss_pred HhhcCCCCceEEEeecCccc---ccCCCCHHH--HHHHHHHHhhhccccccceecc------CCChHHHhhhccc--CC-
Q 018102 232 RKYKDKQGGNIGLVVDCEWA---EANSDKIED--KSAAARRLDFQIGWYLHPIYYG------DYPEVMRNNLGDQ--LP- 297 (360)
Q Consensus 232 ~~~~~~~~~kVG~~~~~~~~---~P~~~~p~D--~~aa~~~~~~~~~~flD~~~~G------~YP~~~~~~l~~~--~p- 297 (360)
+... ++ .||+-++..-. .+...+++| +..++..... .--+++.- .| .|+..+.+.+++. .|
T Consensus 221 ~~vg--~~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~-giD~i~vs-~~~~~~~~~~~~~~~~~ik~~~~~pv 295 (362)
T PRK10605 221 AEWG--AD-RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKR-GIAYLHMS-EPDWAGGEPYSDAFREKVRARFHGVI 295 (362)
T ss_pred HHcC--CC-eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHc-CCCEEEec-cccccCCccccHHHHHHHHHHCCCCE
Confidence 7642 23 58988875431 122234444 4444443321 11233332 12 2333333333322 12
Q ss_pred ----CCCHhHHHHh--cCCCcEEEEc
Q 018102 298 ----KFMQKDKELV--RNSLDFVGLN 317 (360)
Q Consensus 298 ----~~t~ed~e~i--kg~~DFiGiN 317 (360)
.+++++.+.+ .|.+|++|+-
T Consensus 296 ~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 296 IGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred EEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 3577777755 4789999985
No 188
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.50 E-value=95 Score=29.12 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=39.3
Q ss_pred ccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 76 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
-.+++.-+++++++|.+.+++.-. +..+.....+.-...++.++++++.+.++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345667789999999999998531 1111110001112356778888999999999877743
No 189
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=29.48 E-value=96 Score=29.71 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCC
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 142 (360)
.+.+|+.|-+++.|-+-|.-=+ . ++|+.-+++.+++..+|.+.+|--++-...++
T Consensus 117 a~riK~~G~~avK~Lvy~~~D~----~-e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSDE----D-EINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred HHHHHHhcccceEEEEEEcCCc----h-HHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 4789999999999999984322 2 68999999999999999999998888776544
No 190
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.45 E-value=4.5e+02 Score=24.48 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~ 135 (360)
.+.+-+++++++|++.+=+++......+.. - .++. .....+-+.+.++||++.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~-~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSR-L-DWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhc-c-CCCH---HHHHHHHHHHHHcCCCce
Confidence 478889999999999998876543322222 1 1222 456788889999999875
No 191
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=29.34 E-value=5.6e+02 Score=25.16 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=77.5
Q ss_pred cCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchh----------hHhhcCC-----CC---ChHHHHHHHHHHHHHHH
Q 018102 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH----------LHESMGG-----WL---NKEIVKYFEIYADTCFA 172 (360)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~----------l~~~~gg-----~~---~~~~~~~F~~ya~~~~~ 172 (360)
-++.+.+..++++.+.++++|-..++=|.|.+.-.. ......+ .+ -.++++.|++=|+.+.+
T Consensus 74 ~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~ 153 (337)
T PRK13523 74 IWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE 153 (337)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999543110 0000000 11 13578888887766655
Q ss_pred HhC-CCccEEEEecccccccccCcccccc-CCCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecC
Q 018102 173 SFG-DRVKNWITINEPLQTAVNGYCTGIF-APGR--HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (360)
Q Consensus 173 ~~~-~~V~~w~t~NEp~~~~~~gy~~g~~-~p~~--~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~ 248 (360)
- | |-|. +.+-.||+...| .|.. ..+..- -.+-|-+.--...++.+|+.. +..||+-++.
T Consensus 154 a-GfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~yG---GslenR~Rf~~eii~~ir~~~----~~~v~vRis~ 216 (337)
T PRK13523 154 A-GFDVIE---------IHGAHGYLINEFLSPLSNKRTDEYG---GSPENRYRFLREIIDAVKEVW----DGPLFVRISA 216 (337)
T ss_pred c-CCCEEE---------EccccchHHHHhcCCccCCcCCCCC---CCHHHHHHHHHHHHHHHHHhc----CCCeEEEecc
Confidence 3 3 3332 234567776654 3321 111000 013344444445566666642 4568887776
Q ss_pred cccccCCCCHHHH-HHHHHH
Q 018102 249 EWAEANSDKIEDK-SAAARR 267 (360)
Q Consensus 249 ~~~~P~~~~p~D~-~aa~~~ 267 (360)
..+.+-..+++|. ..++..
T Consensus 217 ~d~~~~G~~~~e~~~i~~~l 236 (337)
T PRK13523 217 SDYHPGGLTVQDYVQYAKWM 236 (337)
T ss_pred cccCCCCCCHHHHHHHHHHH
Confidence 5444433355554 334443
No 192
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=28.61 E-value=3.1e+02 Score=26.29 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=39.3
Q ss_pred cHHHHHHHHHcCCCeEE-eccc-c-----cccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 79 YKEDIDLIAKLGFDAYR-FSIS-W-----SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
.+|.++.||++|++.+- .+.+ - .++.|. ..+. +.+.+.++.+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~----~~t~---~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN----KLSS---DEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC----CCCH---HHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 36789999999999885 2321 1 122232 2332 5567999999999999998765 3444
No 193
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=28.39 E-value=1.3e+02 Score=32.97 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCC------CcCChh--hHHHHHHHHHHHHHCCCeEEEEeccCCCchhhH
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g------~~~n~~--~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~ 148 (360)
.+-+..++++||.++=.|=-|.-.==...| +++|++ |.+-+.+++.+++++||-.|+.+. |..+.
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIV----PNHMa 94 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIV----PNHMA 94 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEec----ccchh
Confidence 555788899999998877555322100001 344443 567789999999999999999984 65544
No 194
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.17 E-value=2e+02 Score=27.38 Aligned_cols=72 Identities=11% Similarity=0.011 Sum_probs=51.3
Q ss_pred cCccccccHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhH
Q 018102 72 AVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (360)
Q Consensus 72 a~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~ 148 (360)
+++..+...+-.+.+|++|++.+|.+..=+|--|.. .| +-. +.+..+-+.+++.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G--~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG--LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC--cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 345566667777899999999999997556666643 22 233 5566677778999999999998755555544
No 195
>PRK05474 xylose isomerase; Provisional
Probab=28.13 E-value=6.8e+02 Score=25.77 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=78.5
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHH----HHHHCCCeEEE-EeccCCCchhhHhhcCCCCCh
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQPYV-TLYHWDLPLHLHESMGGWLNK 157 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~----~l~~~gi~p~v-tL~h~~~P~~l~~~~gg~~~~ 157 (360)
+..+.+||+..|-| -=..|.|++ . .+.+ ..+.++.+++ .+.+.||+.+. |..-|..|.... |+++||
T Consensus 85 fe~~~kLg~~~~~F--HD~D~~peg-~-s~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tnp 156 (437)
T PRK05474 85 FEFFTKLGVPYYCF--HDVDVAPEG-A-SLKE-YNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATNP 156 (437)
T ss_pred HHHHHHhCCCeecc--CccccCCCC-C-CHHH-HHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCCC
Confidence 55799999998655 345688876 2 3332 2234455544 45678998654 666688897753 889886
Q ss_pred H--HHHHHHHHHHH---HHHHhCCCccEEEEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 018102 158 E--IVKYFEIYADT---CFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQR 232 (360)
Q Consensus 158 ~--~~~~F~~ya~~---~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~ 232 (360)
+ +...-++-++. +.+++|.. .++ .|.|. -|.-.+ ..+..-+..-|+..+-..++...++
T Consensus 157 d~~Vra~A~~qvk~alD~~~eLGge--~yV--------~WgGR-EGye~~-----~ntD~~~e~d~~~~~l~~v~dYa~~ 220 (437)
T PRK05474 157 DPDVFAYAAAQVKTALDATKRLGGE--NYV--------FWGGR-EGYETL-----LNTDLKREREQLARFLQMVVDYKHK 220 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC--eEE--------ECCCc-ccccch-----hhcCHHHHHHHHHHHHHHHHHHhhh
Confidence 4 33333333332 45667753 111 12221 111111 1122344455666666667776666
Q ss_pred hhcCCCCceEEEeecCcccccCC
Q 018102 233 KYKDKQGGNIGLVVDCEWAEANS 255 (360)
Q Consensus 233 ~~~~~~~~kVG~~~~~~~~~P~~ 255 (360)
+ ..+++| .+-.-|.+|..
T Consensus 221 i---Gf~~~f--~IEPKP~EPr~ 238 (437)
T PRK05474 221 I---GFKGTF--LIEPKPQEPTK 238 (437)
T ss_pred c---CCCceE--EeccCCCCCCC
Confidence 4 234454 45566777765
No 196
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=28.11 E-value=2.2e+02 Score=21.69 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=31.8
Q ss_pred HHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
++++.+|+.++|-| ... | +.+-+.+++..|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~r-g------g~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SSR-G------GARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CCC-c------HHHHHHHHHHHHH-CCCeEEEeC
Confidence 58899999999999 222 4 4577899999998 788777776
No 197
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=27.84 E-value=1.2e+02 Score=32.87 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=36.7
Q ss_pred HHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCC----h-HHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 122 NIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN----K-EIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 122 ~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~----~-~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
.++.++++++=..-+....|..|.|+.. ||.. + .++....++..-+.+.+|=.++|--+|||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~---g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGN---GWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGT---TSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccC---CCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 4788899988877778888999999974 4432 2 23344456666677888888888889999754
No 198
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.31 E-value=1.4e+02 Score=29.39 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|+++.+++.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 589999999999999998754332 2258889999999999998876
No 199
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=27.10 E-value=2.4e+02 Score=27.62 Aligned_cols=63 Identities=22% Similarity=0.391 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHcCCCeEEeccc----c-------cccccCC---------CCCcCChhhHHHHHHHHHHHHHCCCeEEEE
Q 018102 78 RYKEDIDLIAKLGFDAYRFSIS----W-------SRIFPDG---------LGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~---------~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (360)
..++-|+.|+..++|.+-+-++ | +++-..+ .| .+.. +=++++++-++++||++|.-
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~-~YT~---~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGG-YYTQ---EDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCC-cCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 3567789999999998776552 3 3332211 02 3444 44799999999999999987
Q ss_pred eccCCCchhh
Q 018102 138 LYHWDLPLHL 147 (360)
Q Consensus 138 L~h~~~P~~l 147 (360)
+ |+|...
T Consensus 95 i---D~PGH~ 101 (329)
T cd06568 95 I---DMPGHT 101 (329)
T ss_pred c---CCcHHH
Confidence 7 567654
No 200
>PRK14566 triosephosphate isomerase; Provisional
Probab=26.72 E-value=1.7e+02 Score=27.83 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=36.6
Q ss_pred HHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.+++++|++.+=++=|=.|..= + +-| +....-+..++++||+|++++-
T Consensus 89 ~mL~d~G~~~viiGHSERR~~f---~-Etd----~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 89 QMLKDAGCRYVIIGHSERRRMY---G-ETS----NIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHcCCCEEEECcccccCCC---C-cCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 7899999999888877444321 2 223 4567788999999999999994
No 201
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=26.72 E-value=2.5e+02 Score=30.02 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=53.6
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchh----hHhh----
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH----LHES---- 150 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~----l~~~---- 150 (360)
.++|+++.++.|++.+|+..+-+.+ +-....++.++++|....+++..-..|.+ +.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 3456789999999999998765443 22355556667777766666543222411 1100
Q ss_pred ------------cCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEeccccc
Q 018102 151 ------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 151 ------------~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
-.|-..|. ...+.++.+-++++ ..-...+-|-..+
T Consensus 164 ~~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HHcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 03445544 44566666667774 3334566666654
No 202
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.19 E-value=2.4e+02 Score=27.32 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCC--eEEecccccccccCCCC-CcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCC---chhhHhh---
Q 018102 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLHES--- 150 (360)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l~~~--- 150 (360)
.+-++.+++.|+. ++=+.+.|....-.... -.+|.+.+---..||++|++.|++.++.++-+-. |..-+.+
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 3345566666654 44444445433100000 1233333333579999999999999987764322 2211100
Q ss_pred c----------------C------CCCChHHHHHHHHHHHHHHHHhCCCccEEEEecccccc
Q 018102 151 M----------------G------GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (360)
Q Consensus 151 ~----------------g------g~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~ 190 (360)
| + .++||+..+.|.+..+......|= .-+|+=+|||.+.
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 172 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEIW 172 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCccC
Confidence 0 0 146888888887766554444432 2458889999743
No 203
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=25.90 E-value=1.6e+02 Score=26.42 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCC-CeEEEEeccCCCchhhHhhcCCCCChH
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWLNKE 158 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~g-i~p~vtL~h~~~P~~l~~~~gg~~~~~ 158 (360)
++=.++|+++--+.+=+.+.-. ++. . .+ .+....+|+.+++.. -+|||.+-|...|....+. ....
T Consensus 49 ~~~a~~ia~~~a~~~~ld~~~N---~~~-~-~~----~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~----~~~~ 115 (178)
T PF14606_consen 49 PEVADLIAEIDADLIVLDCGPN---MSP-E-EF----RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN----SRGE 115 (178)
T ss_dssp HHHHHHHHHS--SEEEEEESHH---CCT-T-TH----HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS------TTS-
T ss_pred HHHHHHHhcCCCCEEEEEeecC---CCH-H-HH----HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc----hHHH
Confidence 3445688888777777666544 222 2 33 367899999999988 8999999887776543221 1245
Q ss_pred HHHHHHHHHHHHHHHh---CCCccEEEEecc
Q 018102 159 IVKYFEIYADTCFASF---GDRVKNWITINE 186 (360)
Q Consensus 159 ~~~~F~~ya~~~~~~~---~~~V~~w~t~NE 186 (360)
..+.+.+-.+.+++++ |++--|++.-.|
T Consensus 116 ~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 116 TVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 6888888888888888 776666665555
No 204
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=25.82 E-value=2.2e+02 Score=28.89 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC---CCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchhhHhhcCCCC
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 155 (360)
.+=++.++++|+| |+|+-=.-+-++- -| .... -+--...++.+++.|+.-+ ++|. |++|.
T Consensus 137 ~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lg-R~h~--~~~~~~a~~~~~~~g~~~in~DLI-yglP~---------- 200 (416)
T COG0635 137 AEKFKALKEAGVN--RISLGVQSFNDEVLKALG-RIHD--EEEAKEAVELARKAGFTSINIDLI-YGLPG---------- 200 (416)
T ss_pred HHHHHHHHHcCCC--EEEeccccCCHHHHHHhc-CCCC--HHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 5668999999999 7777421121111 03 2211 1345678888999998754 4555 46662
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccEEEEecccccccccCccccccCC
Q 018102 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAP 202 (360)
Q Consensus 156 ~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~~p 202 (360)
++.+.|.+=.+.+++-=-++|..+-..-||+.....-...|...|
T Consensus 201 --QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP 245 (416)
T COG0635 201 --QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALP 245 (416)
T ss_pred --CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCc
Confidence 235555555566555556889999999999987665555555334
No 205
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.77 E-value=1.1e+02 Score=25.01 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCeEEeccc-cccc-ccCCCCCcC-ChhhHHHHHHHHHHHHHCCCeE
Q 018102 80 KEDIDLIAKLGFDAYRFSIS-WSRI-FPDGLGTKI-NMEGITFYNNIIDALLQKGIQP 134 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~g~~~-n~~~l~~y~~~i~~l~~~gi~p 134 (360)
.+.++.+++.|++.+++|+. -+.- ..+ .+ ....++..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLR----IINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHH----HHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhh----hhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 88899999999999999994 3221 111 11 1124577789999999999985
No 206
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.75 E-value=2.1e+02 Score=26.97 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=38.5
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEecc
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 140 (360)
..+-++.++++|++++-+.+..+|.-..+ .++... -+.+-+.+.++++.......|
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~---~~~~~~~~~~~~~~~~~i~~H 68 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEV---IDWFKAALETNKNLSQIVLVH 68 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHH---HHHHHHHHHHcCCCCcceecc
Confidence 45668999999999999999888876543 455433 344445578888874434445
No 207
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.54 E-value=2.5e+02 Score=27.29 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=43.3
Q ss_pred cHHHHHHHHHcCCCeEEecc----cccc---cccCC--CC---CcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchh
Q 018102 79 YKEDIDLIAKLGFDAYRFSI----SWSR---IFPDG--LG---TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH 146 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si----~W~r---i~P~~--~g---~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~ 146 (360)
.++-|+.|+..++|.+-+-+ +|.- -.|+- .| ..+.. +=++++++-++++||++|.-+ |+|..
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCccc
Confidence 45668999999999887765 5632 23331 01 14555 457999999999999999877 46643
No 208
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.35 E-value=4.9e+02 Score=24.02 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=36.1
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEE
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV 136 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~v 136 (360)
+++-++.++++|++.+=+++.=.+..+.. . .++. .....+-+.|.++||+...
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~-~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR-L-DWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc-c-cCCH---HHHHHHHHHHHHcCCCceE
Confidence 57889999999999998875411111111 1 2333 4467888899999999764
No 209
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=25.13 E-value=1.3e+02 Score=29.97 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHH
Q 018102 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT 169 (360)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~ 169 (360)
+..+.+++.++++|+..=+...|-.++.-+.++| |-.....++.-.++++.
T Consensus 118 ~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky-~~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 118 EKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKY-GPTPEAMVESALEHVRI 168 (359)
T ss_dssp HHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEecccccCcHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999888 33334455555566664
No 210
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=25.12 E-value=2.8e+02 Score=29.05 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCeEEecccccccccCC--------CCC----cC----C-hhhHHHHHHHHHHHHHCCCeEEEEeccCC
Q 018102 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG--------LGT----KI----N-MEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~P~~--------~g~----~~----n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 142 (360)
+.|++..++.|++.+|++...+.+.--. .|. .+ + ...+++|.++.+++.+.|..-+ ++-
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I-~Ik--- 175 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSI-CIK--- 175 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEE-EeC---
Confidence 3468899999999999987655441000 000 00 0 0123444444444444444322 221
Q ss_pred CchhhHhhcCCCCChHHHHHHHHHHHHHHHHhC-CCccEEEEecccccc
Q 018102 143 LPLHLHESMGGWLNKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQT 190 (360)
Q Consensus 143 ~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~-~~V~~w~t~NEp~~~ 190 (360)
+ -.|-..|. ...+.++.+-++++ +..-.+.+-|-..+.
T Consensus 176 ------D-taGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 176 ------D-MAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred ------C-CccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 1 14555554 45566777777886 333346677766543
No 211
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=25.03 E-value=1.9e+02 Score=30.11 Aligned_cols=102 Identities=19% Similarity=0.335 Sum_probs=51.3
Q ss_pred HHcCCCeEEecccccccccCC------CC----CcCCh--hhHHHHHHHHHHHHHC--CCeEEEEeccCCCchhhHhh--
Q 018102 87 AKLGFDAYRFSISWSRIFPDG------LG----TKINM--EGITFYNNIIDALLQK--GIQPYVTLYHWDLPLHLHES-- 150 (360)
Q Consensus 87 ~~lG~~~~R~si~W~ri~P~~------~g----~~~n~--~~l~~y~~~i~~l~~~--gi~p~vtL~h~~~P~~l~~~-- 150 (360)
..+|++..|..|-=+..-... .+ +.|+. +..++--.+|.++++. +|+.+.+- |..|.|+-..
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCc
Confidence 348999999888333322111 01 12221 1222223567766654 46666665 8999998542
Q ss_pred c--CCCCC----hHHHHHHHHHHHHHHHHhCCC-ccE--EEEecccccc
Q 018102 151 M--GGWLN----KEIVKYFEIYADTCFASFGDR-VKN--WITINEPLQT 190 (360)
Q Consensus 151 ~--gg~~~----~~~~~~F~~ya~~~~~~~~~~-V~~--w~t~NEp~~~ 190 (360)
+ +|... ++..+.||+|-...++.|+.. |.. -.+-|||...
T Consensus 188 ~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 188 MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 1 24443 356677888888888888764 444 5589999864
No 212
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.01 E-value=2.9e+02 Score=29.58 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=19.0
Q ss_pred cccccHH-----HHHHHHHcCCCeEEeccc
Q 018102 75 HYHRYKE-----DIDLIAKLGFDAYRFSIS 99 (360)
Q Consensus 75 ~~~~~~e-----Di~l~~~lG~~~~R~si~ 99 (360)
-|..|.+ .++++++.|++.+|..-+
T Consensus 89 Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~ 118 (596)
T PRK14042 89 GYRNYADDVVRAFVKLAVNNGVDVFRVFDA 118 (596)
T ss_pred ccccCChHHHHHHHHHHHHcCCCEEEEccc
Confidence 4555665 578999999999997644
No 213
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=24.96 E-value=95 Score=26.86 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=37.6
Q ss_pred ccCccccccHHHHH-HHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE
Q 018102 71 VAVDHYHRYKEDID-LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (360)
Q Consensus 71 ~a~~~~~~~~eDi~-l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~ 135 (360)
.+|......++|+. .++.+|+..+++.+.|+--= ... -+. ++--..|+++||.|=
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~W--t~d-~it-------~~gr~~l~~~giapp 91 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPW--TTD-WIT-------EDAREKLREYGIAPP 91 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCC--ChH-HCC-------HHHHHHHHhcCccCC
Confidence 46777788888886 57778999998888774221 112 333 344567899999874
No 214
>PRK06256 biotin synthase; Validated
Probab=24.74 E-value=1.3e+02 Score=29.09 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHcCCCeEEecc-cccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 78 RYKEDIDLIAKLGFDAYRFSI-SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
.-+|.++.|+++|++.+-+++ +=.++.+.-.. .- .++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~-~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVT-TH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCC-CC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 457889999999999988876 32233333211 12 24667789999999999865543
No 215
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=24.62 E-value=1.5e+02 Score=27.26 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCe
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ 133 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~ 133 (360)
-.-+.-++|+++||.+++.| +|-+ | .. -++-|..+-+.|.++|+.
T Consensus 135 V~vetAiaml~dmG~~SiKf-------fPm~-G--l~--~leE~~avAkA~a~~g~~ 179 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKF-------FPMG-G--LK--HLEELKAVAKACARNGFT 179 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE----------T-T--TT--THHHHHHHHHHHHHCT-E
T ss_pred ccHHHHHHHHHHcCCCeeeE-------eecC-C--cc--cHHHHHHHHHHHHHcCce
Confidence 34566789999999999986 6776 5 22 356688888888888873
No 216
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.09 E-value=3.2e+02 Score=28.43 Aligned_cols=109 Identities=14% Similarity=-0.046 Sum_probs=69.8
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCC-CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCC--CchhhHhh---
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD--LPLHLHES--- 150 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~--~P~~l~~~--- 150 (360)
..-++|++.+.+.|++.+++.++-|.+.-+. -+ .--.+.++...+.+..+++.|+++.+++-... -|..+.+-
T Consensus 73 r~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~-~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~ 151 (488)
T PRK09389 73 RAVKVDIDAALECDVDSVHLVVPTSDLHIEYKLK-KTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKA 151 (488)
T ss_pred ccCHHHHHHHHhCCcCEEEEEEccCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHH
Confidence 3348999999999999999999877664332 12 22245788889999999999999888876432 23333211
Q ss_pred ---c----------CCCCChHHHHHHHHHHHHHHHHhCCCccEEEEecccccc
Q 018102 151 ---M----------GGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (360)
Q Consensus 151 ---~----------gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~NEp~~~ 190 (360)
. .|... +..+.++.+.+.++++ ..--+..-|-..+.
T Consensus 152 ~~~~Ga~~i~l~DTvG~~~---P~~~~~lv~~l~~~~~-v~l~~H~HND~GlA 200 (488)
T PRK09389 152 GIEAGADRICFCDTVGILT---PEKTYELFKRLSELVK-GPVSIHCHNDFGLA 200 (488)
T ss_pred HHhCCCCEEEEecCCCCcC---HHHHHHHHHHHHhhcC-CeEEEEecCCccHH
Confidence 1 23334 3455566666666664 22235566766653
No 217
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=24.08 E-value=1e+02 Score=28.11 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=28.7
Q ss_pred cccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHH
Q 018102 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALL 128 (360)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~ 128 (360)
....+||+.++++|.+.+=|+.- +.+| .+|. +..+++++.+.
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L------~~dg-~iD~---~~~~~Li~~a~ 113 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGAL------TEDG-EIDE---EALEELIEAAG 113 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--B------ETTS-SB-H---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeeEEEeE------CCCC-CcCH---HHHHHHHHhcC
Confidence 34668999999999999999874 2347 8997 55677777765
No 218
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=24.03 E-value=3.7e+02 Score=23.88 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCC--eEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCc
Q 018102 81 EDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (360)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 144 (360)
.|...+|..|++ .+|.+ +|.+ ..| ..+..-++.++++||. +..+||..|
T Consensus 16 ~dw~~vk~~Gi~faiikat--------eG~~-~~D----~~~~~n~~~A~~aGl~--vG~Yhf~~~ 66 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT--------EGTT-YRN----PYAASQIANAKAAGLK--VSAYHYAHY 66 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc--------CCCC-ccC----hHHHHHHHHHHHCCCe--eEEEEEEec
Confidence 478899999998 34442 3434 566 4678999999999993 689998765
No 219
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.87 E-value=4.3e+02 Score=23.33 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCC
Q 018102 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (360)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 142 (360)
|.+.+|+.|++.+=+=+. ++.+ .+| ..+..-+..++++||. +..+||-
T Consensus 16 d~~~vk~~gi~fviiKat------eG~~-~~D----~~~~~~~~~a~~~Gl~--vG~Yhy~ 63 (191)
T cd06413 16 DWARVRAQGVSFAYIKAT------EGGD-HVD----KRFAENWRGARAAGLP--RGAYHFF 63 (191)
T ss_pred CHHHHHhCCCcEEEEEEc------CCCC-ccC----HHHHHHHHHHHHcCCc--eEEEEEE
Confidence 566777777764322221 2323 455 4667777888888873 3677763
No 220
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=23.86 E-value=45 Score=29.21 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=30.6
Q ss_pred ceeccCCChHHHhhhcccCCCCCHhHHHHhcCCCcEEEEccccc
Q 018102 278 PIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTS 321 (360)
Q Consensus 278 ~~~~G~YP~~~~~~l~~~~p~~t~ed~e~ikg~~DFiGiNYYss 321 (360)
+++.|...+-+..++- -.++.|.|...|..++|||.|+=++.
T Consensus 72 avl~Gkv~EqlaP~lp--~F~ynP~D~RFlG~PVD~IvF~Gls~ 113 (156)
T PF10107_consen 72 AVLKGKVSEQLAPFLP--EFPYNPKDARFLGSPVDFIVFDGLSD 113 (156)
T ss_pred HHHcchhHHHhhhccC--CCCCChhhheecCCCceEEEEcCCCC
Confidence 4456776555544431 13468999999999999999999976
No 221
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.77 E-value=74 Score=18.96 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=12.3
Q ss_pred HHHHHHHHHHCCCeE
Q 018102 120 YNNIIDALLQKGIQP 134 (360)
Q Consensus 120 y~~~i~~l~~~gi~p 134 (360)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467888888899987
No 222
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.68 E-value=1.3e+02 Score=28.03 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHcCCCeEEeccccccc-ccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 78 RYKEDIDLIAKLGFDAYRFSISWSRI-FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri-~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
..+.-++.++.+|++.+|+. ..... .|.. . ..-...++.++.+++.+.++||+..+=.
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 95 IMKKAIRLAQDLGIRTIQLA-GYDVYYEEKS-E-ETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEC-Cccccccccc-H-HHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 34556788999999999974 11111 1111 1 1112356778889999999999877643
No 223
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.62 E-value=3e+02 Score=26.29 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=57.0
Q ss_pred HHHHHHHcCC--CeEEecccccccc-----cCCCC-CcCChhhHHHHHHHHHHHHHCCCeEEEEeccC-CC-c---hh--
Q 018102 82 DIDLIAKLGF--DAYRFSISWSRIF-----PDGLG-TKINMEGITFYNNIIDALLQKGIQPYVTLYHW-DL-P---LH-- 146 (360)
Q Consensus 82 Di~l~~~lG~--~~~R~si~W~ri~-----P~~~g-~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~-~~-P---~~-- 146 (360)
=++.+++.|| +++=+.+.|..-- .++-+ -.+|.+.+--...||++|++.|++.++.++-. .. | ..
T Consensus 30 v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~ 109 (292)
T cd06595 30 LMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPE 109 (292)
T ss_pred HHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHH
Confidence 3455555554 4666666774311 01101 13444444456899999999999999877532 11 1 11
Q ss_pred hHhhc-----------CCCCChHHHHHHHHHHHHHHHHhCCCcc-EEEEecccccc
Q 018102 147 LHESM-----------GGWLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPLQT 190 (360)
Q Consensus 147 l~~~~-----------gg~~~~~~~~~F~~ya~~~~~~~~~~V~-~w~t~NEp~~~ 190 (360)
+.... ..+.+|+..+.|-+-....+... -|+ .|.=+|||...
T Consensus 110 ~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~--Gidg~W~D~~E~~~~ 163 (292)
T cd06595 110 MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQ--GVDFWWLDWQQGNRT 163 (292)
T ss_pred HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhc--CCcEEEecCCCCccc
Confidence 11111 12567776665433333222223 244 58888999764
No 224
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=23.21 E-value=64 Score=30.00 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCccEEEEeccccc
Q 018102 165 IYADTCFASFGDRVKNWITINEPLQ 189 (360)
Q Consensus 165 ~ya~~~~~~~~~~V~~w~t~NEp~~ 189 (360)
...+.+.+. +..+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 225
>PTZ00445 p36-lilke protein; Provisional
Probab=22.98 E-value=1.1e+02 Score=28.47 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChH---------HHHHHHHHHHHHHH
Q 018102 118 TFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE---------IVKYFEIYADTCFA 172 (360)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~---------~~~~F~~ya~~~~~ 172 (360)
+.-+.+++.|++.||+.+++=+--++ .-. .-|||.++. ....|..+...+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTl-I~~--HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTM-ITK--HSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhh-hhh--hcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 45688899999999999986432121 111 138998886 45556665555443
No 226
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=22.87 E-value=8.4e+02 Score=25.05 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=78.7
Q ss_pred HHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHH----HHHHCCCeEEE-EeccCCCchhhHhhcCCCCCh
Q 018102 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQPYV-TLYHWDLPLHLHESMGGWLNK 157 (360)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~----~l~~~gi~p~v-tL~h~~~P~~l~~~~gg~~~~ 157 (360)
+..|.+||+..|-| -=..|.|++ . .+.+ ..+.++++++ .+.+.||+++. |..-|..|.+.. |+++||
T Consensus 84 Fef~~kLg~~~~~F--HD~D~~peg-~-~~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 84 FEFFEKLGVPYYCF--HDRDIAPEG-A-SLRE-TNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHhCCCeecc--CccccCCCC-C-CHHH-HHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 45689999998654 345688886 2 3332 2233444444 45678998655 566688898753 889886
Q ss_pred H--HHHHHHHHHHH---HHHHhCCCccEEEEecccccccccCccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 018102 158 E--IVKYFEIYADT---CFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQR 232 (360)
Q Consensus 158 ~--~~~~F~~ya~~---~~~~~~~~V~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~hn~l~Aha~Av~~~k~ 232 (360)
+ +...-+.-++. +.+++|.. .++ .|.|. -|.-.+ ..+..-+..-|+..+-..++...++
T Consensus 156 d~~Vra~A~~qvk~alD~~~eLGge--nyV--------~WgGR-EGye~~-----lntD~~~e~d~~~~~l~~~~dYa~~ 219 (434)
T TIGR02630 156 DADVFAYAAAQVKKALEVTKKLGGE--NYV--------FWGGR-EGYETL-----LNTDMKRELDHLARFLHMAVDYAKK 219 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCC--eEE--------ECCCc-cccccc-----cccCHHHHHHHHHHHHHHHHHHhhh
Confidence 4 33322233332 45667653 111 12221 111111 1223345556777777777776666
Q ss_pred hhcCCCCceEEEeecCcccccCC
Q 018102 233 KYKDKQGGNIGLVVDCEWAEANS 255 (360)
Q Consensus 233 ~~~~~~~~kVG~~~~~~~~~P~~ 255 (360)
+ ..+++| .+-.-|.+|..
T Consensus 220 i---Gf~~~f--~IEPKP~EPr~ 237 (434)
T TIGR02630 220 I---GFKGQF--LIEPKPKEPTK 237 (434)
T ss_pred c---CCCceE--EeccCCCCccc
Confidence 5 234454 45556666764
No 227
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=22.60 E-value=1.7e+02 Score=26.06 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=43.9
Q ss_pred CccCccccccHHHHHHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEE
Q 018102 70 DVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (360)
Q Consensus 70 ~~a~~~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vt 137 (360)
..+.|.+..-...+..+..+.++.++++.++-+-.... .......+.++..++..|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~------~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTD------PEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccC------hhHHHHHHHHHHHHHHCCCeEEEe
Confidence 34566666556777888888888888887765443321 123367889999999999998876
No 228
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.17 E-value=3.3e+02 Score=24.38 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccEEE
Q 018102 157 KEIVKYFEIYADTCFASFGDRVKNWI 182 (360)
Q Consensus 157 ~~~~~~F~~ya~~~~~~~~~~V~~w~ 182 (360)
.+..+...+|++.|-+++|.++-.+.
T Consensus 109 ~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 109 KKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 44566777777777777776654443
No 229
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.16 E-value=7.5e+02 Score=24.21 Aligned_cols=145 Identities=11% Similarity=-0.009 Sum_probs=77.5
Q ss_pred cCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCch---------hhHhhcCC-----CCC---hHHHHHHHHHHHHHHHH
Q 018102 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL---------HLHESMGG-----WLN---KEIVKYFEIYADTCFAS 173 (360)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~---------~l~~~~gg-----~~~---~~~~~~F~~ya~~~~~~ 173 (360)
-.+.+.+..++++++.++++|-..++=|.|.+.-. -......+ .+. .++++.|++=|+.+.+.
T Consensus 70 ~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 70 LNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREA 149 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 56778899999999999999999999999954311 00000000 111 34677777777665543
Q ss_pred hCCCccEEEEecccccccccCccccccC-CCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCccc
Q 018102 174 FGDRVKNWITINEPLQTAVNGYCTGIFA-PGR-HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWA 251 (360)
Q Consensus 174 ~~~~V~~w~t~NEp~~~~~~gy~~g~~~-p~~-~~~~~~~~~~~~hn~l~Aha~Av~~~k~~~~~~~~~kVG~~~~~~~~ 251 (360)
=-|-|. +..-.||+...|- |.. +..+.-.. .+-|-+.--...++.+|+.. ..+..|++-++..-+
T Consensus 150 GfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~yGG--slenR~r~~~eiv~aIR~~v--G~d~~v~iRi~~~D~ 216 (353)
T cd02930 150 GYDGVE---------IMGSEGYLINQFLAPRTNKRTDEWGG--SFENRMRFPVEIVRAVRAAV--GEDFIIIYRLSMLDL 216 (353)
T ss_pred CCCEEE---------EecccchHHHHhcCCccCCCcCccCC--CHHHHhHHHHHHHHHHHHHc--CCCceEEEEeccccc
Confidence 223343 2344577765542 321 00000000 12344444456677777753 235568877765443
Q ss_pred ccCCCCHHH-HHHHHHHH
Q 018102 252 EANSDKIED-KSAAARRL 268 (360)
Q Consensus 252 ~P~~~~p~D-~~aa~~~~ 268 (360)
.+-..++++ +..++...
T Consensus 217 ~~~g~~~~e~~~i~~~Le 234 (353)
T cd02930 217 VEGGSTWEEVVALAKALE 234 (353)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 332234444 34444433
No 230
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=21.69 E-value=3.4e+02 Score=27.70 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCeEEecc--cccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEE-EEeccCCCchh--hHhhcCCC
Q 018102 80 KEDIDLIAKLGFDAYRFSI--SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLH--LHESMGGW 154 (360)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si--~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~--l~~~~gg~ 154 (360)
.+|+..+.++.--..|+++ .|. .+|.+.|+ +.++++||..- ++..-|..|.- -.=++|..
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd---------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSL 137 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD---------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSL 137 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC---------cCCHHHHH------HHHHHcCCccceeccccccCccccccccccccc
Confidence 5778888777766666666 771 24655554 88999999988 76666766632 11134667
Q ss_pred CC--hHHHHHHHHHHHHH---HHHhCCC-ccEEE
Q 018102 155 LN--KEIVKYFEIYADTC---FASFGDR-VKNWI 182 (360)
Q Consensus 155 ~~--~~~~~~F~~ya~~~---~~~~~~~-V~~w~ 182 (360)
.| +++.+...+-+..| .+..|.. |..|+
T Consensus 138 tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 138 SHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 76 45677777766654 4566654 54444
No 231
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.61 E-value=3.4e+02 Score=26.54 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=53.7
Q ss_pred cHHHHHHHHHcCCCeEEecccccccccC-----CCCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCC
Q 018102 79 YKEDIDLIAKLGFDAYRFSISWSRIFPD-----GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG 153 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~P~-----~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 153 (360)
.+|.++.||++|++++= +.+..-+-|+ ..+ ... .+-..+.|+.+++.||++..++. +++|
T Consensus 140 ~~e~l~~LkeAGl~~i~-~~~~E~~~~~v~~~i~~~-~~~---~~~~~~~i~~a~~~Gi~v~s~~i-~G~~--------- 204 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMP-GTAAEILDDEVRKVICPD-KLS---TAEWIEIIKTAHKLGIPTTATIM-YGHV--------- 204 (343)
T ss_pred HHHHHHHHHHhCccccc-CcchhhcCHHHHHhcCCC-CCC---HHHHHHHHHHHHHcCCcccceEE-EecC---------
Confidence 46779999999999874 2222211110 012 222 24457899999999998876654 2333
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccEEEEec
Q 018102 154 WLNKEIVKYFEIYADTCFASFGDRVKNWITIN 185 (360)
Q Consensus 154 ~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~N 185 (360)
.+.+-+.....+.+.+-..++ .+.-.+++|
T Consensus 205 -Et~ed~~~~l~~lr~l~~~~~-~~~~~iP~~ 234 (343)
T TIGR03551 205 -ETPEHWVDHLLILREIQEETG-GFTEFVPLP 234 (343)
T ss_pred -CCHHHHHHHHHHHHHhhHHhC-CeeEEEecc
Confidence 234445556666666666664 345566666
No 232
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=21.52 E-value=1.1e+02 Score=33.23 Aligned_cols=64 Identities=20% Similarity=0.400 Sum_probs=42.9
Q ss_pred ccccHHH-HHHHHHcCCCeEEecc--cc-ccc-----------ccCC-CCCcCC-hhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 76 YHRYKED-IDLIAKLGFDAYRFSI--SW-SRI-----------FPDG-LGTKIN-MEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 76 ~~~~~eD-i~l~~~lG~~~~R~si--~W-~ri-----------~P~~-~g~~~n-~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
|..+.|+ +.-+|+||.|++-+-- +- +.. -|.. .| ..+ ..-+.=.+.||+++.+.||++++.+
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYg-t~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYG-TPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccccccc-CCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 8878787 9999999999987321 11 111 1221 12 222 1114458999999999999999987
Q ss_pred cc
Q 018102 139 YH 140 (360)
Q Consensus 139 ~h 140 (360)
.|
T Consensus 332 V~ 333 (757)
T KOG0470|consen 332 VH 333 (757)
T ss_pred hh
Confidence 75
No 233
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=21.37 E-value=1.1e+02 Score=24.69 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=41.6
Q ss_pred CccccccHHHHHHH-HHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEe
Q 018102 73 VDHYHRYKEDIDLI-AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (360)
Q Consensus 73 ~~~~~~~~eDi~l~-~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL 138 (360)
.+||+-|.+|-..+ +.+|++..........-.|.- | +.. ..++..+..|.++|.++.+.=
T Consensus 24 G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~-g--fp~---~~l~~~l~~Ll~~G~~V~i~~ 84 (113)
T PF01624_consen 24 GDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMA-G--FPK---SQLDKYLKKLLEAGYRVAIYE 84 (113)
T ss_dssp TTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEE-E--EEG---GGHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEEccCHHHHHHhccceeeeccccccccccEe-c--ccH---HHHHHHHHHHHHcCCEEEEEE
Confidence 57999999997755 558998876654443323443 4 444 457888899999999988764
No 234
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.06 E-value=3.4e+02 Score=27.05 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=56.9
Q ss_pred cccccHHHHHHHHHcCCCeEEecccccccccCC----CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhh
Q 018102 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG----LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (360)
Q Consensus 75 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~----~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 150 (360)
-+-.-++=++.+.++|++-+-+||+ -+-|.. .| ..+=.+++-.++.+.+.+.||-++++ |.|+-
T Consensus 199 g~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G--~~dYdv~kvle~aE~i~~a~idvlIa------Pv~lP-- 266 (414)
T COG2100 199 GVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAG--RKDYDVKKVLEVAEYIANAGIDVLIA------PVWLP-- 266 (414)
T ss_pred ceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcC--ccccCHHHHHHHHHHHHhCCCCEEEe------eeecC--
Confidence 3344556688999999998888884 233321 13 23334688889999999999999876 56763
Q ss_pred cCCCCChHHHHHHHHHHHHHH
Q 018102 151 MGGWLNKEIVKYFEIYADTCF 171 (360)
Q Consensus 151 ~gg~~~~~~~~~F~~ya~~~~ 171 (360)
| .|.+-...+.+||+.+-
T Consensus 267 --G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 267 --G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred --C-cChHHHHHHHHHHHHhC
Confidence 3 35555777888888764
No 235
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=20.77 E-value=2.4e+02 Score=32.62 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEec--cCC--------CchhhHh---------hcCC----CCChHHHHHHHHHHHHHHHH
Q 018102 117 ITFYNNIIDALLQKGIQPYVTLY--HWD--------LPLHLHE---------SMGG----WLNKEIVKYFEIYADTCFAS 173 (360)
Q Consensus 117 l~~y~~~i~~l~~~gi~p~vtL~--h~~--------~P~~l~~---------~~gg----~~~~~~~~~F~~ya~~~~~~ 173 (360)
++=+++||++|.++||++|+.+. |.. .|.|... .++| ..++.+...+.+-++.-+++
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999854 321 1322210 0011 13466677777777777777
Q ss_pred hC
Q 018102 174 FG 175 (360)
Q Consensus 174 ~~ 175 (360)
|+
T Consensus 634 y~ 635 (1111)
T TIGR02102 634 FK 635 (1111)
T ss_pred cC
Confidence 75
No 236
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.76 E-value=2.7e+02 Score=26.16 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=36.8
Q ss_pred HHHHHcCCCeEEecccccccccCCCCCcCChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~P~~~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
.+++++|++.+=++=|=.|-. +++ .-+....-+..++++||+|++++-
T Consensus 78 ~mL~d~G~~~viiGHSERR~~-------f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQY-------FGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHcCCCEEEeCcccccCc-------CCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 799999999988887644332 222 126678889999999999999994
No 237
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.40 E-value=1.8e+02 Score=24.47 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=39.4
Q ss_pred cHHHHHHHHHcCCCeEEecccc-cccccCCCCCcC--ChhhHHHHHHHHHHHHHCCCeEEEEec
Q 018102 79 YKEDIDLIAKLGFDAYRFSISW-SRIFPDGLGTKI--NMEGITFYNNIIDALLQKGIQPYVTLY 139 (360)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~~--n~~~l~~y~~~i~~l~~~gi~p~vtL~ 139 (360)
-+++++.|+++|+..+.+|++- +...-. .+ ....++.+-+.|+.+.+.|+...+.+.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVAD----KIRGSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHH----HHhcCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 4788999999999999999953 222111 11 112346678888889988888776664
No 238
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=20.23 E-value=1.5e+02 Score=28.53 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=27.0
Q ss_pred cCChhhHHHHHHHHHHHHHCCCeEEEEecc
Q 018102 111 KINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (360)
Q Consensus 111 ~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 140 (360)
.+|..+.....++|.++++.|++++++.|+
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~ 197 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHF 197 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 588988899999999999899999999985
No 239
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=20.10 E-value=3.7e+02 Score=31.25 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=35.1
Q ss_pred eeeeeccccccccccCCCCCCCceeeeecccCCcccc-----CCCCCccCccccccHHH-----HHHHHHcCCCeEEecc
Q 018102 29 VFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIID-----KSNGDVAVDHYHRYKED-----IDLIAKLGFDAYRFSI 98 (360)
Q Consensus 29 lwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~-----~~~~~~a~~~~~~~~eD-----i~l~~~lG~~~~R~si 98 (360)
+||+|| |++-=-+ -..+=|+........+++ ...|..+. -|..|.+| ++..++.|++.+|..=
T Consensus 574 ~wggAt--fd~~~rf----l~EdPwerl~~~r~~~pn~~~qml~Rg~n~v-gy~~ypd~vv~~f~~~~~~~GidifrifD 646 (1143)
T TIGR01235 574 CWGGAT--FDVAMRF----LHEDPWERLEDLRKGVPNILFQMLLRGANGV-GYTNYPDNVVKYFVKQAAQGGIDIFRVFD 646 (1143)
T ss_pred eeCCcc--HHHHHHH----hcCCHHHHHHHHHHhCCCCceeeeecccccc-CccCCCHHHHHHHHHHHHHcCCCEEEECc
Confidence 699888 5554332 123456654321111110 11232233 38888888 4677999999999743
No 240
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.05 E-value=4.7e+02 Score=24.70 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=43.4
Q ss_pred CCCcCChhhHHHHHHHHHHHHHCCCeEEEEeccCCCchhhHhhcCCCCChHHHHHHHHHHHHHHHHhCCCccEEEEe
Q 018102 108 LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITI 184 (360)
Q Consensus 108 ~g~~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~F~~ya~~~~~~~~~~V~~w~t~ 184 (360)
+| .+|+++ ++++|+.+.+.|+.-++.+-+- |-+ ..-+.+...+..+.+.+.-++++..+.-.
T Consensus 13 ~g-~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv 74 (285)
T TIGR00674 13 DG-SVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAGT 74 (285)
T ss_pred CC-CcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 47 899844 7999999999999999887531 111 11235566777788888888887765443
Done!